Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645850 | XP_003606841.1 | 88.384 | 198 | 23 | 0 | 1 | 198 | 1 | 198 | 8.69e-122 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645850 | sp|Q9FK61|Y5809_ARATH | 30.070 | 143 | 95 | 4 | 4 | 144 | 11 | 150 | 3.27e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0645850 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645850 | MtrunA17_Chr4g0033951 | 88.384 | 198 | 23 | 0 | 1 | 198 | 1 | 198 | 7.99e-126 | 352 |
| Msa0645850 | MtrunA17_Chr4g0033941 | 53.846 | 156 | 51 | 6 | 44 | 180 | 1 | 154 | 5.54e-37 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0645850 | AT5G18090.1 | 30.070 | 143 | 95 | 4 | 4 | 144 | 11 | 150 | 3.32e-14 | 70.1 |
| Msa0645850 | AT3G17010.1 | 27.976 | 168 | 110 | 6 | 4 | 164 | 14 | 177 | 1.09e-11 | 62.8 |
| Msa0645850 | AT5G18000.1 | 31.193 | 109 | 68 | 4 | 4 | 108 | 13 | 118 | 2.28e-11 | 62.0 |
Find 36 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTCTCTTGGCCACAAT+TGG | 0.131130 | 4_3:-51272385 | None:intergenic |
| ATGTTCAAGGTGGAAATTTA+TGG | 0.176554 | 4_3:+51272307 | Msa0645850:CDS |
| TTCTTTGATGATAGAGAAAA+AGG | 0.238400 | 4_3:-51271583 | None:intergenic |
| GAAGAAAGCATCAATTATTC+TGG | 0.262336 | 4_3:+51272138 | Msa0645850:CDS |
| TGGATATGGGTGAAGAGTTT+TGG | 0.266007 | 4_3:+51272116 | Msa0645850:CDS |
| ATTATTCTGGTATGCTCTTC+TGG | 0.267481 | 4_3:+51272151 | Msa0645850:CDS |
| AGTTGGACTTGAAGAGTTCT+TGG | 0.296108 | 4_3:+51272261 | Msa0645850:CDS |
| ACTGAAGATTGTTATGGATA+TGG | 0.300118 | 4_3:+51272102 | Msa0645850:CDS |
| TTTCCAACGCATACTCTCTT+TGG | 0.308501 | 4_3:-51272505 | None:intergenic |
| TCTTTCTCTTGGCCACAATT+GGG | 0.346000 | 4_3:-51272384 | None:intergenic |
| GTGGAAATTTATGGTAAGAA+TGG | 0.371009 | 4_3:+51272316 | Msa0645850:CDS |
| TTTGTCTTAGCCACAATTGT+TGG | 0.398096 | 4_3:-51272463 | None:intergenic |
| TGGTCTACCCCTCTTTCTCT+TGG | 0.402146 | 4_3:-51272395 | None:intergenic |
| TTTATCTGCGAAACTTTGAT+TGG | 0.404846 | 4_3:+51272215 | Msa0645850:CDS |
| TGGAAATTTATGGTAAGAAT+GGG | 0.420098 | 4_3:+51272317 | Msa0645850:CDS |
| CTTTCTCTTGGCCACAATTG+GGG | 0.448018 | 4_3:-51272383 | None:intergenic |
| AGTACCACTGAAGATTGTTA+TGG | 0.454780 | 4_3:+51272096 | Msa0645850:CDS |
| TCTACTAAAATAACAGAAAG+AGG | 0.490912 | 4_3:-51272592 | None:intergenic |
| TTTCTGAAAGACAACTCAGT+TGG | 0.508167 | 4_3:+51272244 | Msa0645850:CDS |
| CTGAAGATTGTTATGGATAT+GGG | 0.516066 | 4_3:+51272103 | Msa0645850:CDS |
| TAATGGAGAAAACATGTTCA+AGG | 0.519688 | 4_3:+51272294 | Msa0645850:CDS |
| CAATTGTGGCCAAGAGAAAG+AGG | 0.520539 | 4_3:+51272386 | Msa0645850:CDS |
| AAAATAACAGAAAGAGGAGC+AGG | 0.548640 | 4_3:-51272586 | None:intergenic |
| AGTTGTTGCAGCCCCAATTG+TGG | 0.571592 | 4_3:+51272372 | Msa0645850:CDS |
| AATTGTGGCTAAGACAAAGA+TGG | 0.585870 | 4_3:+51272468 | Msa0645850:CDS |
| AGAATCTGCACCAACAATTG+TGG | 0.587568 | 4_3:+51272453 | Msa0645850:CDS |
| ATGCTCTTCTGGTGAGAAGT+GGG | 0.591020 | 4_3:+51272162 | Msa0645850:CDS |
| CAAATGAATTACCATGCACT+TGG | 0.596053 | 4_3:-51271616 | None:intergenic |
| AGGTTTCAACACCAAGTGCA+TGG | 0.605306 | 4_3:+51271605 | Msa0645850:CDS |
| AATCCAAAGAGAGTATGCGT+TGG | 0.611249 | 4_3:+51272502 | Msa0645850:CDS |
| AATTGTGGCCAAGAGAAAGA+GGG | 0.618437 | 4_3:+51272387 | Msa0645850:CDS |
| TATGCTCTTCTGGTGAGAAG+TGG | 0.619565 | 4_3:+51272161 | Msa0645850:CDS |
| TGGAGAAAACATGTTCAAGG+TGG | 0.671580 | 4_3:+51272297 | Msa0645850:CDS |
| CGTTGGAAAACAAAACGCAG+AGG | 0.680803 | 4_3:+51272519 | Msa0645850:CDS |
| ATATCCATAACAATCTTCAG+TGG | 0.686786 | 4_3:-51272100 | None:intergenic |
| ATTGTGGCCAAGAGAAAGAG+GGG | 0.688040 | 4_3:+51272388 | Msa0645850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAAAATATGTTTACTTTT+TGG | + | chr4_3:51271916-51271935 | Msa0645850:intron | 15.0% |
| !!! | ATCAAAATATGTTTACTTTT+TGG | + | chr4_3:51271916-51271935 | Msa0645850:intron | 15.0% |
| !! | TAGAAAAATGTTATTAAGCT+AGG | + | chr4_3:51271747-51271766 | Msa0645850:intron | 20.0% |
| !! | TATATATGTATAATCTCAGT+TGG | - | chr4_3:51271825-51271844 | None:intergenic | 20.0% |
| !! | ATTATACATATATACGAATC+CGG | + | chr4_3:51271831-51271850 | Msa0645850:intron | 20.0% |
| !! | AGATTATGACATAAAAAACA+TGG | - | chr4_3:51272070-51272089 | None:intergenic | 20.0% |
| !! | TAGAAAAATGTTATTAAGCT+AGG | + | chr4_3:51271747-51271766 | Msa0645850:intron | 20.0% |
| !! | TATATATGTATAATCTCAGT+TGG | - | chr4_3:51271825-51271844 | None:intergenic | 20.0% |
| !! | ATTATACATATATACGAATC+CGG | + | chr4_3:51271831-51271850 | Msa0645850:intron | 20.0% |
| !! | AGATTATGACATAAAAAACA+TGG | - | chr4_3:51272070-51272089 | None:intergenic | 20.0% |
| !! | TTCTTTGATGATAGAGAAAA+AGG | - | chr4_3:51271586-51271605 | None:intergenic | 25.0% |
| !! | TTTTTCTCTATCATCAAAGA+AGG | + | chr4_3:51271585-51271604 | Msa0645850:CDS | 25.0% |
| ! | AAATTATTGAGTTTGTCATC+AGG | - | chr4_3:51271881-51271900 | None:intergenic | 25.0% |
| ! | AAATATGTATGTATATGCAC+CGG | - | chr4_3:51272015-51272034 | None:intergenic | 25.0% |
| !!! | TTCTTGGTTTTCACTTATAA+TGG | + | chr4_3:51272277-51272296 | Msa0645850:CDS | 25.0% |
| ! | TGGAAATTTATGGTAAGAAT+GGG | + | chr4_3:51272317-51272336 | Msa0645850:CDS | 25.0% |
| ! | TCTACTAAAATAACAGAAAG+AGG | - | chr4_3:51272595-51272614 | None:intergenic | 25.0% |
| !! | TTCTTTGATGATAGAGAAAA+AGG | - | chr4_3:51271586-51271605 | None:intergenic | 25.0% |
| !! | TTTTTCTCTATCATCAAAGA+AGG | + | chr4_3:51271585-51271604 | Msa0645850:CDS | 25.0% |
| ! | AAATTATTGAGTTTGTCATC+AGG | - | chr4_3:51271881-51271900 | None:intergenic | 25.0% |
| ! | AAATATGTATGTATATGCAC+CGG | - | chr4_3:51272015-51272034 | None:intergenic | 25.0% |
| !!! | TTCTTGGTTTTCACTTATAA+TGG | + | chr4_3:51272277-51272296 | Msa0645850:CDS | 25.0% |
| ! | TGGAAATTTATGGTAAGAAT+GGG | + | chr4_3:51272317-51272336 | Msa0645850:CDS | 25.0% |
| ! | TCTACTAAAATAACAGAAAG+AGG | - | chr4_3:51272595-51272614 | None:intergenic | 25.0% |
| ! | TTGATGATAGAGAAAAAGGA+TGG | - | chr4_3:51271582-51271601 | None:intergenic | 30.0% |
| ! | GGAAATCTGAGATTTAAACT+TGG | - | chr4_3:51271783-51271802 | None:intergenic | 30.0% |
| !!! | GGTGAATGAGTTTTTTAATC+AGG | - | chr4_3:51271804-51271823 | None:intergenic | 30.0% |
| ATATCCATAACAATCTTCAG+TGG | - | chr4_3:51272103-51272122 | None:intergenic | 30.0% | |
| ACTGAAGATTGTTATGGATA+TGG | + | chr4_3:51272102-51272121 | Msa0645850:CDS | 30.0% | |
| CTGAAGATTGTTATGGATAT+GGG | + | chr4_3:51272103-51272122 | Msa0645850:CDS | 30.0% | |
| !! | GAAGAAAGCATCAATTATTC+TGG | + | chr4_3:51272138-51272157 | Msa0645850:CDS | 30.0% |
| TTTATCTGCGAAACTTTGAT+TGG | + | chr4_3:51272215-51272234 | Msa0645850:CDS | 30.0% | |
| TAATGGAGAAAACATGTTCA+AGG | + | chr4_3:51272294-51272313 | Msa0645850:CDS | 30.0% | |
| ATGTTCAAGGTGGAAATTTA+TGG | + | chr4_3:51272307-51272326 | Msa0645850:CDS | 30.0% | |
| GTGGAAATTTATGGTAAGAA+TGG | + | chr4_3:51272316-51272335 | Msa0645850:CDS | 30.0% | |
| ACCAACAATTGTGACAAAAA+AGG | + | chr4_3:51272546-51272565 | Msa0645850:CDS | 30.0% | |
| CCAACAATTGTGACAAAAAA+GGG | + | chr4_3:51272547-51272566 | Msa0645850:CDS | 30.0% | |
| ! | TTGATGATAGAGAAAAAGGA+TGG | - | chr4_3:51271582-51271601 | None:intergenic | 30.0% |
| ! | GGAAATCTGAGATTTAAACT+TGG | - | chr4_3:51271783-51271802 | None:intergenic | 30.0% |
| !!! | GGTGAATGAGTTTTTTAATC+AGG | - | chr4_3:51271804-51271823 | None:intergenic | 30.0% |
| ATATCCATAACAATCTTCAG+TGG | - | chr4_3:51272103-51272122 | None:intergenic | 30.0% | |
| ACTGAAGATTGTTATGGATA+TGG | + | chr4_3:51272102-51272121 | Msa0645850:CDS | 30.0% | |
| CTGAAGATTGTTATGGATAT+GGG | + | chr4_3:51272103-51272122 | Msa0645850:CDS | 30.0% | |
| !! | GAAGAAAGCATCAATTATTC+TGG | + | chr4_3:51272138-51272157 | Msa0645850:CDS | 30.0% |
| TTTATCTGCGAAACTTTGAT+TGG | + | chr4_3:51272215-51272234 | Msa0645850:CDS | 30.0% | |
| TAATGGAGAAAACATGTTCA+AGG | + | chr4_3:51272294-51272313 | Msa0645850:CDS | 30.0% | |
| ATGTTCAAGGTGGAAATTTA+TGG | + | chr4_3:51272307-51272326 | Msa0645850:CDS | 30.0% | |
| GTGGAAATTTATGGTAAGAA+TGG | + | chr4_3:51272316-51272335 | Msa0645850:CDS | 30.0% | |
| ACCAACAATTGTGACAAAAA+AGG | + | chr4_3:51272546-51272565 | Msa0645850:CDS | 30.0% | |
| CCAACAATTGTGACAAAAAA+GGG | + | chr4_3:51272547-51272566 | Msa0645850:CDS | 30.0% | |
| CAAATGAATTACCATGCACT+TGG | - | chr4_3:51271619-51271638 | None:intergenic | 35.0% | |
| CTTGCTGATGAGAAAGTTAT+AGG | + | chr4_3:51271700-51271719 | Msa0645850:intron | 35.0% | |
| AGTACCACTGAAGATTGTTA+TGG | + | chr4_3:51272096-51272115 | Msa0645850:CDS | 35.0% | |
| ATTATTCTGGTATGCTCTTC+TGG | + | chr4_3:51272151-51272170 | Msa0645850:CDS | 35.0% | |
| ! | TTTCTGAAAGACAACTCAGT+TGG | + | chr4_3:51272244-51272263 | Msa0645850:CDS | 35.0% |
| !!! | TCTTGCTTTTTCTTGAAGCA+TGG | - | chr4_3:51272352-51272371 | None:intergenic | 35.0% |
| !!! | ACATCTGCAGGATTTTTTCT+TGG | - | chr4_3:51272418-51272437 | None:intergenic | 35.0% |
| AAAAAATCCTGCAGATGTCA+AGG | + | chr4_3:51272420-51272439 | Msa0645850:CDS | 35.0% | |
| TTTGTCTTAGCCACAATTGT+TGG | - | chr4_3:51272466-51272485 | None:intergenic | 35.0% | |
| AATTGTGGCTAAGACAAAGA+TGG | + | chr4_3:51272468-51272487 | Msa0645850:CDS | 35.0% | |
| !!! | CCCTTTTTTGTCACAATTGT+TGG | - | chr4_3:51272550-51272569 | None:intergenic | 35.0% |
| AAAATAACAGAAAGAGGAGC+AGG | - | chr4_3:51272589-51272608 | None:intergenic | 35.0% | |
| CAAATGAATTACCATGCACT+TGG | - | chr4_3:51271619-51271638 | None:intergenic | 35.0% | |
| CTTGCTGATGAGAAAGTTAT+AGG | + | chr4_3:51271700-51271719 | Msa0645850:intron | 35.0% | |
| AGTACCACTGAAGATTGTTA+TGG | + | chr4_3:51272096-51272115 | Msa0645850:CDS | 35.0% | |
| ATTATTCTGGTATGCTCTTC+TGG | + | chr4_3:51272151-51272170 | Msa0645850:CDS | 35.0% | |
| ! | TTTCTGAAAGACAACTCAGT+TGG | + | chr4_3:51272244-51272263 | Msa0645850:CDS | 35.0% |
| !!! | TCTTGCTTTTTCTTGAAGCA+TGG | - | chr4_3:51272352-51272371 | None:intergenic | 35.0% |
| !!! | ACATCTGCAGGATTTTTTCT+TGG | - | chr4_3:51272418-51272437 | None:intergenic | 35.0% |
| AAAAAATCCTGCAGATGTCA+AGG | + | chr4_3:51272420-51272439 | Msa0645850:CDS | 35.0% | |
| TTTGTCTTAGCCACAATTGT+TGG | - | chr4_3:51272466-51272485 | None:intergenic | 35.0% | |
| AATTGTGGCTAAGACAAAGA+TGG | + | chr4_3:51272468-51272487 | Msa0645850:CDS | 35.0% | |
| !!! | CCCTTTTTTGTCACAATTGT+TGG | - | chr4_3:51272550-51272569 | None:intergenic | 35.0% |
| AAAATAACAGAAAGAGGAGC+AGG | - | chr4_3:51272589-51272608 | None:intergenic | 35.0% | |
| ATACATCCTGACTGAGTGAA+TGG | + | chr4_3:51271967-51271986 | Msa0645850:intron | 40.0% | |
| ! | TGGATATGGGTGAAGAGTTT+TGG | + | chr4_3:51272116-51272135 | Msa0645850:CDS | 40.0% |
| AGTTGGACTTGAAGAGTTCT+TGG | + | chr4_3:51272261-51272280 | Msa0645850:CDS | 40.0% | |
| TGGAGAAAACATGTTCAAGG+TGG | + | chr4_3:51272297-51272316 | Msa0645850:CDS | 40.0% | |
| TCTTTCTCTTGGCCACAATT+GGG | - | chr4_3:51272387-51272406 | None:intergenic | 40.0% | |
| AATTGTGGCCAAGAGAAAGA+GGG | + | chr4_3:51272387-51272406 | Msa0645850:CDS | 40.0% | |
| ! | TTTTCTTCCTTGACATCTGC+AGG | - | chr4_3:51272430-51272449 | None:intergenic | 40.0% |
| AGAATCTGCACCAACAATTG+TGG | + | chr4_3:51272453-51272472 | Msa0645850:CDS | 40.0% | |
| ! | AATCCAAAGAGAGTATGCGT+TGG | + | chr4_3:51272502-51272521 | Msa0645850:CDS | 40.0% |
| TTTCCAACGCATACTCTCTT+TGG | - | chr4_3:51272508-51272527 | None:intergenic | 40.0% | |
| ATACATCCTGACTGAGTGAA+TGG | + | chr4_3:51271967-51271986 | Msa0645850:intron | 40.0% | |
| ! | TGGATATGGGTGAAGAGTTT+TGG | + | chr4_3:51272116-51272135 | Msa0645850:CDS | 40.0% |
| AGTTGGACTTGAAGAGTTCT+TGG | + | chr4_3:51272261-51272280 | Msa0645850:CDS | 40.0% | |
| TGGAGAAAACATGTTCAAGG+TGG | + | chr4_3:51272297-51272316 | Msa0645850:CDS | 40.0% | |
| TCTTTCTCTTGGCCACAATT+GGG | - | chr4_3:51272387-51272406 | None:intergenic | 40.0% | |
| AATTGTGGCCAAGAGAAAGA+GGG | + | chr4_3:51272387-51272406 | Msa0645850:CDS | 40.0% | |
| ! | TTTTCTTCCTTGACATCTGC+AGG | - | chr4_3:51272430-51272449 | None:intergenic | 40.0% |
| AGAATCTGCACCAACAATTG+TGG | + | chr4_3:51272453-51272472 | Msa0645850:CDS | 40.0% | |
| ! | AATCCAAAGAGAGTATGCGT+TGG | + | chr4_3:51272502-51272521 | Msa0645850:CDS | 40.0% |
| TTTCCAACGCATACTCTCTT+TGG | - | chr4_3:51272508-51272527 | None:intergenic | 40.0% | |
| AGGTTTCAACACCAAGTGCA+TGG | + | chr4_3:51271605-51271624 | Msa0645850:CDS | 45.0% | |
| ! | GGATTTTCTGAACCCCTGTA+GGG | - | chr4_3:51271860-51271879 | None:intergenic | 45.0% |
| ! | AGGATTTTCTGAACCCCTGT+AGG | - | chr4_3:51271861-51271880 | None:intergenic | 45.0% |
| TTTGGACCGTTCATCTCGAT+TGG | + | chr4_3:51271934-51271953 | Msa0645850:intron | 45.0% | |
| TATGCTCTTCTGGTGAGAAG+TGG | + | chr4_3:51272161-51272180 | Msa0645850:CDS | 45.0% | |
| ATGCTCTTCTGGTGAGAAGT+GGG | + | chr4_3:51272162-51272181 | Msa0645850:CDS | 45.0% | |
| CTTTCTCTTGGCCACAATTG+GGG | - | chr4_3:51272386-51272405 | None:intergenic | 45.0% | |
| CTCTTTCTCTTGGCCACAAT+TGG | - | chr4_3:51272388-51272407 | None:intergenic | 45.0% | |
| CAATTGTGGCCAAGAGAAAG+AGG | + | chr4_3:51272386-51272405 | Msa0645850:CDS | 45.0% | |
| ATTGTGGCCAAGAGAAAGAG+GGG | + | chr4_3:51272388-51272407 | Msa0645850:CDS | 45.0% | |
| CGTTGGAAAACAAAACGCAG+AGG | + | chr4_3:51272519-51272538 | Msa0645850:CDS | 45.0% | |
| AGGTTTCAACACCAAGTGCA+TGG | + | chr4_3:51271605-51271624 | Msa0645850:CDS | 45.0% | |
| ! | GGATTTTCTGAACCCCTGTA+GGG | - | chr4_3:51271860-51271879 | None:intergenic | 45.0% |
| ! | AGGATTTTCTGAACCCCTGT+AGG | - | chr4_3:51271861-51271880 | None:intergenic | 45.0% |
| TTTGGACCGTTCATCTCGAT+TGG | + | chr4_3:51271934-51271953 | Msa0645850:intron | 45.0% | |
| TATGCTCTTCTGGTGAGAAG+TGG | + | chr4_3:51272161-51272180 | Msa0645850:CDS | 45.0% | |
| ATGCTCTTCTGGTGAGAAGT+GGG | + | chr4_3:51272162-51272181 | Msa0645850:CDS | 45.0% | |
| CTTTCTCTTGGCCACAATTG+GGG | - | chr4_3:51272386-51272405 | None:intergenic | 45.0% | |
| CTCTTTCTCTTGGCCACAAT+TGG | - | chr4_3:51272388-51272407 | None:intergenic | 45.0% | |
| CAATTGTGGCCAAGAGAAAG+AGG | + | chr4_3:51272386-51272405 | Msa0645850:CDS | 45.0% | |
| ATTGTGGCCAAGAGAAAGAG+GGG | + | chr4_3:51272388-51272407 | Msa0645850:CDS | 45.0% | |
| CGTTGGAAAACAAAACGCAG+AGG | + | chr4_3:51272519-51272538 | Msa0645850:CDS | 45.0% | |
| TACGAATCCGGATTCCCTAC+AGG | + | chr4_3:51271843-51271862 | Msa0645850:intron | 50.0% | |
| ACGAATCCGGATTCCCTACA+GGG | + | chr4_3:51271844-51271863 | Msa0645850:intron | 50.0% | |
| GACCGTTCATCTCGATTGGA+CGG | + | chr4_3:51271938-51271957 | Msa0645850:intron | 50.0% | |
| GACCGTCCAATCGAGATGAA+CGG | - | chr4_3:51271943-51271962 | None:intergenic | 50.0% | |
| CTGCAACCATTCACTCAGTC+AGG | - | chr4_3:51271976-51271995 | None:intergenic | 50.0% | |
| AGTGAATGGTTGCAGTCTGC+AGG | + | chr4_3:51271981-51272000 | Msa0645850:intron | 50.0% | |
| GTGAATGGTTGCAGTCTGCA+GGG | + | chr4_3:51271982-51272001 | Msa0645850:intron | 50.0% | |
| AGTTGTTGCAGCCCCAATTG+TGG | + | chr4_3:51272372-51272391 | Msa0645850:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_3:51272398-51272417 | None:intergenic | 50.0% | |
| TACGAATCCGGATTCCCTAC+AGG | + | chr4_3:51271843-51271862 | Msa0645850:intron | 50.0% | |
| ACGAATCCGGATTCCCTACA+GGG | + | chr4_3:51271844-51271863 | Msa0645850:intron | 50.0% | |
| GACCGTTCATCTCGATTGGA+CGG | + | chr4_3:51271938-51271957 | Msa0645850:intron | 50.0% | |
| GACCGTCCAATCGAGATGAA+CGG | - | chr4_3:51271943-51271962 | None:intergenic | 50.0% | |
| CTGCAACCATTCACTCAGTC+AGG | - | chr4_3:51271976-51271995 | None:intergenic | 50.0% | |
| AGTGAATGGTTGCAGTCTGC+AGG | + | chr4_3:51271981-51272000 | Msa0645850:intron | 50.0% | |
| GTGAATGGTTGCAGTCTGCA+GGG | + | chr4_3:51271982-51272001 | Msa0645850:intron | 50.0% | |
| AGTTGTTGCAGCCCCAATTG+TGG | + | chr4_3:51272372-51272391 | Msa0645850:CDS | 50.0% | |
| TGGTCTACCCCTCTTTCTCT+TGG | - | chr4_3:51272398-51272417 | None:intergenic | 50.0% | |
| CGAATCCGGATTCCCTACAG+GGG | + | chr4_3:51271845-51271864 | Msa0645850:intron | 55.0% | |
| CTGAACCCCTGTAGGGAATC+CGG | - | chr4_3:51271853-51271872 | None:intergenic | 55.0% | |
| GTTGCAGTCTGCAGGGAATC+TGG | + | chr4_3:51271989-51272008 | Msa0645850:intron | 55.0% | |
| CGAATCCGGATTCCCTACAG+GGG | + | chr4_3:51271845-51271864 | Msa0645850:intron | 55.0% | |
| CTGAACCCCTGTAGGGAATC+CGG | - | chr4_3:51271853-51271872 | None:intergenic | 55.0% | |
| GTTGCAGTCTGCAGGGAATC+TGG | + | chr4_3:51271989-51272008 | Msa0645850:intron | 55.0% | |
| CAGTCTGCAGGGAATCTGGC+CGG | + | chr4_3:51271993-51272012 | Msa0645850:intron | 60.0% | |
| CAGTCTGCAGGGAATCTGGC+CGG | + | chr4_3:51271993-51272012 | Msa0645850:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 51271555 | 51272618 | 51271555 | ID=Msa0645850;Name=Msa0645850 |
| chr4_3 | mRNA | 51271555 | 51272618 | 51271555 | ID=Msa0645850-mRNA-1;Parent=Msa0645850;Name=Msa0645850-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|198 |
| chr4_3 | exon | 51271555 | 51271626 | 51271555 | ID=Msa0645850-mRNA-1:exon:12392;Parent=Msa0645850-mRNA-1 |
| chr4_3 | exon | 51272094 | 51272618 | 51272094 | ID=Msa0645850-mRNA-1:exon:12393;Parent=Msa0645850-mRNA-1 |
| chr4_3 | CDS | 51271555 | 51271626 | 51271555 | ID=Msa0645850-mRNA-1:cds;Parent=Msa0645850-mRNA-1 |
| chr4_3 | CDS | 51272094 | 51272618 | 51272094 | ID=Msa0645850-mRNA-1:cds;Parent=Msa0645850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
