AlfalfaGEDB | Msa0647120

M. sativa cultivar zhongmu-4 / Msa0647120

KEGG: -
GO: -
PFAM: PF00643.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647120	XP_003607012.1	95.536	224	9	1	7	229	1	224	1.76e-146	419

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647120	sp\|Q0IGM7\|BBX20_ARATH	53.000	200	70	4	7	182	1	200	2.15e-57	186

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647120	G7JIM6	95.536	224	9	1	7	229	1	224	8.38e-147	419

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa0647120	TF	DBB

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647120	MtrunA17_Chr4g0035651	95.536	224	9	1	7	229	1	224	1.61e-150	419
Msa0647120	MtrunA17_Chr3g0145061	59.624	213	69	6	7	204	1	211	1.66e-76	231
Msa0647120	MtrunA17_Chr1g0155811	47.926	217	99	4	7	214	1	212	4.08e-57	184
Msa0647120	MtrunA17_Chr3g0142221	47.191	178	58	3	7	183	1	143	1.15e-50	166
Msa0647120	MtrunA17_Chr2g0314671	51.587	126	57	3	7	132	1	122	3.50e-37	132
Msa0647120	MtrunA17_Chr4g0033641	50.000	110	54	1	7	116	1	109	4.88e-34	123
Msa0647120	MtrunA17_Chr2g0329511	48.182	110	56	1	7	116	1	109	1.11e-31	117
Msa0647120	MtrunA17_Chr5g0405151	37.324	142	78	4	7	141	1	138	1.13e-22	92.0
Msa0647120	MtrunA17_Chr1g0150471	42.268	97	46	1	11	107	6	92	4.62e-19	85.1
Msa0647120	MtrunA17_Chr4g0072871	40.860	93	45	1	11	103	22	104	2.40e-16	77.8

Showing 1 to 10 of 15 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647120	AT4G39070.1	53.000	200	70	4	7	182	1	200	2.18e-58	186
Msa0647120	AT1G75540.1	45.411	207	92	4	7	193	1	206	1.18e-53	177
Msa0647120	AT1G78600.1	52.586	116	54	1	7	122	1	115	1.37e-37	134
Msa0647120	AT1G78600.2	43.103	174	90	3	7	179	1	166	2.03e-37	134
Msa0647120	AT1G06040.2	46.715	137	66	2	7	143	1	130	1.54e-36	128
Msa0647120	AT1G06040.1	46.715	137	66	2	7	143	1	130	1.65e-35	127
Msa0647120	AT2G31380.1	51.327	113	54	1	7	119	1	112	3.70e-33	121
Msa0647120	AT4G10240.1	44.138	145	67	4	7	141	1	141	2.17e-30	112
Msa0647120	AT4G38960.1	43.810	105	55	2	7	111	1	101	3.87e-23	93.6
Msa0647120	AT4G38960.6	43.810	105	55	2	7	111	1	101	3.87e-23	93.6

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 82 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAATAGGTCTCGTAA+TGG	0.547529	4_3:+53080917	Msa0647120:five_prime_UTR
AACAATTCCTGGTTACTGCA+TGG	0.545989	4_3:+53082039	Msa0647120:CDS
AACTTACCAAGCAACACAAC+AGG	0.456566	4_3:+53081816	Msa0647120:CDS
AAGAAACCTGTTGTGTTGCT+TGG	0.533532	4_3:-53081822	None:intergenic
AAGAATGGAGGACTAATTGA+AGG	0.493324	4_3:-53082410	None:intergenic
AAGACAGAGCAATACTTTGC+AGG	0.405273	4_3:+53081762	Msa0647120:CDS
AAGTTATAAACATGTCTGAC+TGG	0.451524	4_3:+53082267	Msa0647120:CDS
AAGTTCTTTCAAAGAAAACA+TGG	0.562402	4_3:+53081970	Msa0647120:CDS
AATTGTTTCAATCAAGTATT+CGG	0.312961	4_3:-53082023	None:intergenic
ACCTCTCTGTGATATCTGCA+AGG	0.620933	4_3:+53081418	Msa0647120:CDS

Showing 1 to 10 of 82 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCTCTTTCTATGAGTAAAGA+GGG	-	chr4_3:53080876-53080895	None:intergenic	30.0%
TTCTCTTTCTATGAGTAAAG+AGG	-	chr4_3:53080877-53080896	None:intergenic	30.0%
GAGAGAGTCAGAAAATAAAT+AGG	+	chr4_3:53080906-53080925	Msa0647120:five_prime_UTR	30.0%
CATTTGGATCTGATGAATTA+TGG	-	chr4_3:53081050-53081069	None:intergenic	30.0%
GATGTGGACAAAAGAATTAT+GGG	-	chr4_3:53081179-53081198	None:intergenic	30.0%
TGTTGAAAATCAGTCAAAGA+AGG	-	chr4_3:53081564-53081583	None:intergenic	30.0%
TACTTGATTGAAACAATTCC+TGG	+	chr4_3:53082028-53082047	Msa0647120:CDS	30.0%
ACCTTACAGAAAACGTTATT+AGG	-	chr4_3:53082091-53082110	None:intergenic	30.0%
TAGATGAAAAATAGCTAGCT+AGG	-	chr4_3:53082172-53082191	None:intergenic	30.0%
AAGTTATAAACATGTCTGAC+TGG	+	chr4_3:53082267-53082286	Msa0647120:CDS	30.0%

Showing 1 to 10 of 220 entries

Previous1 2 3 4 5…22Next

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	53080873	53082627	53080873	ID=Msa0647120;Name=Msa0647120
chr4_3	mRNA	53080873	53082627	53080873	ID=Msa0647120-mRNA-1;Parent=Msa0647120;Name=Msa0647120-mRNA-1;_AED=0.05;_eAED=0.05;_QI=363\|1\|1\|1\|1\|1\|3\|170\|265
chr4_3	exon	53080873	53081439	53080873	ID=Msa0647120-mRNA-1:exon:13108;Parent=Msa0647120-mRNA-1
chr4_3	exon	53081734	53082108	53081734	ID=Msa0647120-mRNA-1:exon:13109;Parent=Msa0647120-mRNA-1
chr4_3	exon	53082239	53082627	53082239	ID=Msa0647120-mRNA-1:exon:13110;Parent=Msa0647120-mRNA-1
chr4_3	five_prime_UTR	53080873	53081235	53080873	ID=Msa0647120-mRNA-1:five_prime_utr;Parent=Msa0647120-mRNA-1
chr4_3	CDS	53081236	53081439	53081236	ID=Msa0647120-mRNA-1:cds;Parent=Msa0647120-mRNA-1
chr4_3	CDS	53081734	53082108	53081734	ID=Msa0647120-mRNA-1:cds;Parent=Msa0647120-mRNA-1
chr4_3	CDS	53082239	53082457	53082239	ID=Msa0647120-mRNA-1:cds;Parent=Msa0647120-mRNA-1
chr4_3	three_prime_UTR	53082458	53082627	53082458	ID=Msa0647120-mRNA-1:three_prime_utr;Parent=Msa0647120-mRNA-1

Gene Sequence

>Msa0647120

ATGCTCAAAAATAAAGAGATGAAGATCCAGTGTGATGCATGTCACAAACAAGAGGCCTCCTTGTTTTGCCCTGCAGATGAAGCAGCTCTCTGCAATCAATGTGATCGCAATATCCACTATGCCAACAAGGTCTCTGCTAAACACAAACGCTTCCCTCTTCACCACCCCACTTCCAAAGACACACCTCTCTGTGATATCTGCAAGGAGAGGCGTGCATATCTATTTTGCAAAGAAGACAGAGCAATACTTTGCAGGGAATGTGACATTCCTATCCACGAAGTCAACAAACTTACCAAGCAACACAACAGGTTTCTTCTCACCGGCGTAAAGATCGGTGCTTCTTCTTCTTATTCAAACCCAACAACTTCCAATGGCTCAGAACTAAGAACCTCAAGTCCAAGACCAAGTTCATTTTCAAGTGAAAATAATAGTTGTTCTCAAAGTTCTTTCAAAGAAAACATGGCTTGTGACACAGTTTCAACCAGTAGCATTTCCGAATACTTGATTGAAACAATTCCTGGTTACTGCATGGAAGACCTTTTTGATGCTTCTTTTACACCTAATAACGTTTTCTGTAAGGATTATCATGAACAGAACCAAGATCTTCAAGTTATAAACATGTCTGACTGGGTACCACAATCTCAAGTTAGATTCCGTCAGCTTAGTGCTAATTCGAATGTTCCCCACATTGATTCTTTAGACGGGGTTATGAAAATGCAACATACTAAAGCTGTTGAAGGATACAAAGTTCCTTCAATTAGTCCTCCATTCTTCAAACAATGTAGAGGCACTCGTTAA

Protein sequence

>Msa0647120

MLKNKEMKIQCDACHKQEASLFCPADEAALCNQCDRNIHYANKVSAKHKRFPLHHPTSKDTPLCDICKERRAYLFCKEDRAILCRECDIPIHEVNKLTKQHNRFLLTGVKIGASSSYSNPTTSNGSELRTSSPRPSSFSSENNSCSQSSFKENMACDTVSTSSISEYLIETIPGYCMEDLFDASFTPNNVFCKDYHEQNQDLQVINMSDWVPQSQVRFRQLSANSNVPHIDSLDGVMKMQHTKAVEGYKVPSISPPFFKQCRGTR*