AlfalfaGEDB | Msa0648740

M. sativa cultivar zhongmu-4 / Msa0648740

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0648740	XP_024637264.1	87.736	106	13	0	1	106	60	165	9.19e-63	198

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
Msa0648740	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 42 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTCAGCAACGAAGAA+TGG	0.515537	4_3:+55228888	None:intergenic
AAGTTTACGGAATAAGTTTA+CGG	0.358796	4_3:+55228947	None:intergenic
AATCGTGATGTTTCACTCTA+AGG	0.341127	4_3:+55228447	None:intergenic
ACAGGAATTATATTGTCATA+AGG	0.502590	4_3:+55228407	None:intergenic
ACCTTTGAAGTTCCTATCGT+TGG	0.439777	4_3:-55228604	Msa0648740:CDS
AGGAATTTGCCAAAAGTATC+AGG	0.344083	4_3:+55228467	None:intergenic
ATCGATCCATATCCAACGAT+AGG	0.618850	4_3:+55228592	None:intergenic
ATCTACTTCCACCAAGGTAC+TGG	0.428620	4_3:+55228712	None:intergenic
ATGTGATGTTCGGAAAAGGT+TGG	0.606400	4_3:-55228352	Msa0648740:CDS
ATTATTGCTTTCCAGTACCT+TGG	0.503165	4_3:-55228723	Msa0648740:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTAGGCAGAAAAAGTTTA+CGG	+	chr4_3:55228338-55228357	None:intergenic	30.0%
AAATATTCAGCAACGAAGAA+TGG	+	chr4_3:55228384-55228403	None:intergenic	30.0%
AGTTAGGCAGAAAAAGTTTA+CGG	+	chr4_3:55228338-55228357	None:intergenic	30.0%
AAATATTCAGCAACGAAGAA+TGG	+	chr4_3:55228384-55228403	None:intergenic	30.0%
ATTATTGCTTTCCAGTACCT+TGG	-	chr4_3:55228546-55228565	Msa0648740:intron	35.0%
AATCGTGATGTTTCACTCTA+AGG	+	chr4_3:55228825-55228844	None:intergenic	35.0%
TCTGTATATTTGAGTCTCAC+AGG	+	chr4_3:55228883-55228902	None:intergenic	35.0%
CACATACCAAATGTGATGTT+CGG	-	chr4_3:55228907-55228926	Msa0648740:five_prime_UTR	35.0%
ATTATTGCTTTCCAGTACCT+TGG	-	chr4_3:55228546-55228565	Msa0648740:intron	35.0%
AATCGTGATGTTTCACTCTA+AGG	+	chr4_3:55228825-55228844	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	55228250	55229041	55228250	ID=Msa0648740;Name=Msa0648740
chr4_3	mRNA	55228250	55229041	55228250	ID=Msa0648740-mRNA-1;Parent=Msa0648740;Name=Msa0648740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=388\|1\|0.5\|1\|1\|1\|2\|0\|106
chr4_3	exon	55228250	55228495	55228250	ID=Msa0648740-mRNA-1:exon:14084;Parent=Msa0648740-mRNA-1
chr4_3	exon	55228579	55229041	55228579	ID=Msa0648740-mRNA-1:exon:14083;Parent=Msa0648740-mRNA-1
chr4_3	five_prime_UTR	55228654	55229041	55228654	ID=Msa0648740-mRNA-1:five_prime_utr;Parent=Msa0648740-mRNA-1
chr4_3	CDS	55228579	55228653	55228579	ID=Msa0648740-mRNA-1:cds;Parent=Msa0648740-mRNA-1
chr4_3	CDS	55228250	55228495	55228250	ID=Msa0648740-mRNA-1:cds;Parent=Msa0648740-mRNA-1

Gene Sequence	>Msa0648740 ATGAGTGCGGCAGCATCATGTTATTGTACCTTTGAAGTTCCTATCGTTGGATATGGATCGATGAAATCACCGAAGGAACTACCTGATACTTTTGGCAAATTCCTTAGAGTGAAACATCACGATTACGTCATGTTGTGCGGACCTTATGACAATATAATTCCTGTGAGACTCAAATATACAGACGACCACATACCAAATGTGATGTTCGGAAAAGGTTGGACGAGTTTTTGTGCTGCCAATGGTAATGAGGGCGGAGACGTGTTGATTTTCAAGTACAAGTGCGTCATGGACAAAAAATATGTTATCGTATCCAAGCGTTGA
Protein sequence	>Msa0648740 MSAAASCYCTFEVPIVGYGSMKSPKELPDTFGKFLRVKHHDYVMLCGPYDNIIPVRLKYTDDHIPNVMFGKGWTSFCAANGNEGGDVLIFKYKCVMDKKYVIVSKR*