AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649070 MtrunA17_Chr4g0040681 95.842 505 15 2 1 500 1 504 0.0 1002
Msa0649070 MtrunA17_Chr4g0046291 47.853 489 190 11 13 497 11 438 2.73e-141 415
Msa0649070 MtrunA17_Chr2g0283011 43.284 67 37 1 14 79 10 76 4.45e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649070 AT1G28520.4 47.205 483 168 11 13 476 12 426 5.62e-135 399
Msa0649070 AT1G28520.1 47.205 483 168 11 13 476 12 426 5.62e-135 399
Msa0649070 AT1G28520.2 47.205 483 168 11 13 476 12 426 5.62e-135 399
Msa0649070 AT1G28520.5 47.205 483 168 11 13 476 12 426 5.62e-135 399
Msa0649070 AT1G28520.3 45.417 480 165 10 13 476 12 410 2.55e-127 379
Msa0649070 AT2G42400.1 44.223 502 196 16 13 489 8 450 9.46e-118 354

Find 152 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAATTACACCACAAATTT+TGG 0.120500 4_3:+55650919 Msa0649070:CDS
GTGTCTCTCCTTCTCTTTCA+TGG 0.160134 4_3:-55648975 None:intergenic
GTGCACTGTGGGACTGTTTC+AGG 0.229105 4_3:+55651010 Msa0649070:CDS
CGGATATTTGGAAGAATATT+AGG 0.243736 4_3:-55650955 None:intergenic
AATTGAAAGACATACATTTA+AGG 0.245998 4_3:-55649140 None:intergenic
CCAGAGTCAAATGCCCTTCT+AGG 0.246541 4_3:-55651530 None:intergenic
CAGTCCCACAGTGCACATTT+TGG 0.247458 4_3:-55651003 None:intergenic
GAAGGTGGAGGGCGGATATT+TGG 0.256860 4_3:-55650967 None:intergenic
CGTCGACTTGTAGATATTTC+AGG 0.259494 4_3:+55652019 Msa0649070:three_prime_UTR
ATGCCACCAGGTCGCAAAAT+TGG 0.260053 4_3:-55651117 None:intergenic
GCCATGCCTGAGCTATTTAA+AGG 0.279844 4_3:-55650718 None:intergenic
TTTGACGCAACTACTTCTTC+TGG 0.288517 4_3:-55648564 None:intergenic
GGGAGCCTTGGGTCGTTTCC+CGG 0.307766 4_3:+55649267 Msa0649070:CDS
ATTCGGTTTGAATCAAGATA+TGG 0.326854 4_3:+55650759 Msa0649070:CDS
GGAGCCTTGGGTCGTTTCCC+GGG 0.338311 4_3:+55649268 Msa0649070:CDS
GCAACTACTTCTTCTGGAAT+TGG 0.351512 4_3:-55648558 None:intergenic
TTCTTGAGCGTGAAACTGTT+AGG 0.354570 4_3:+55651486 Msa0649070:CDS
TAGTAGTAATCACGAGCTTT+TGG 0.358062 4_3:+55651068 Msa0649070:CDS
TGTTCTTTGACCAGCCTAGA+AGG 0.366077 4_3:+55651516 Msa0649070:CDS
CAACCACGCCCACAATAATC+AGG 0.369577 4_3:-55651575 None:intergenic
AAAGCCCCTTGGAATGCTTC+AGG 0.372413 4_3:+55651234 Msa0649070:CDS
ATTCTATAGGATGGGAGCCT+TGG 0.372943 4_3:+55649255 Msa0649070:intron
CTTTCTTGCAGACTGAAGAT+TGG 0.379338 4_3:-55649026 None:intergenic
TTCTATAGGATGGGAGCCTT+GGG 0.379881 4_3:+55649256 Msa0649070:intron
CGGTTGGAGGAAGGTTGTTC+CGG 0.396856 4_3:-55648644 None:intergenic
GAGGCCAAGTCTCAGAATAT+TGG 0.400679 4_3:+55651941 Msa0649070:CDS
CCAACTGTTGCAAGGATTTG+AGG 0.409048 4_3:+55649299 Msa0649070:CDS
CAGCTCTGATTTAATTTGTC+GGG 0.416431 4_3:+55650801 Msa0649070:CDS
TTTCTGGTAAGCAACCTTCA+TGG 0.419867 4_3:-55651715 None:intergenic
CAATCTTCAGTCTGCAAGAA+AGG 0.425162 4_3:+55649027 Msa0649070:CDS
CAACAGTTGGGCTAATTCCC+CGG 0.428013 4_3:-55649286 None:intergenic
CCTCAAATCCTTGCAACAGT+TGG 0.442007 4_3:-55649299 None:intergenic
GACTGTTTCAGGCCTGCTCA+AGG 0.443030 4_3:+55651021 Msa0649070:CDS
GCTGCTCCGTCGCCAGATGA+TGG 0.448458 4_3:+55651896 Msa0649070:CDS
GCTCAATTTAATCTTGAAGA+AGG 0.449693 4_3:+55650868 Msa0649070:CDS
CAAGTCGACGACCAGTCATT+TGG 0.451245 4_3:-55652006 None:intergenic
ATCAGTCCTCTGACTAAACC+TGG 0.453669 4_3:+55649336 Msa0649070:CDS
CCTAGAAGGGCATTTGACTC+TGG 0.453832 4_3:+55651530 Msa0649070:CDS
TAGCTCAGGCATGGCTCAGT+TGG 0.463141 4_3:+55650726 Msa0649070:CDS
TGCTGATTTACAAAACAAGA+TGG 0.465472 4_3:+55651859 Msa0649070:CDS
TGAAGCAGCACCTTCACACT+TGG 0.468496 4_3:-55651208 None:intergenic
GCTAGGAAAGCAGAAGGTGG+AGG 0.468704 4_3:-55650979 None:intergenic
TGCCACTCAACATAATCAAC+AGG 0.470016 4_3:-55651668 None:intergenic
CTCAAATCCTTGCAACAGTT+GGG 0.481803 4_3:-55649298 None:intergenic
AGCAGTCCTTTAAATAGCTC+AGG 0.483033 4_3:+55650712 Msa0649070:CDS
TCTTGAGCGTGAAACTGTTA+GGG 0.483389 4_3:+55651487 Msa0649070:CDS
CAGGCCAATATTCTGAGACT+TGG 0.484185 4_3:-55651945 None:intergenic
CTGATTATTGTGGGCGTGGT+TGG 0.485513 4_3:+55651576 Msa0649070:CDS
CTTGTAGATATTTCAGGATG+GGG 0.493360 4_3:+55652025 Msa0649070:three_prime_UTR
TCCTAAAGGAAAAGTGACTA+AGG 0.496242 4_3:+55651829 Msa0649070:CDS
AGAATATACCTTGAGGCGGT+TGG 0.496846 4_3:-55648660 None:intergenic
CACATGGTGAATAAGATTCA+AGG 0.499116 4_3:+55648995 Msa0649070:CDS
CTGCTTCAACGAAAGCCCCT+TGG 0.502920 4_3:+55651223 Msa0649070:CDS
ACTTGTAGATATTTCAGGAT+GGG 0.503384 4_3:+55652024 Msa0649070:three_prime_UTR
ACAAATCGCCGCCGAGGGTA+GGG 0.503631 4_3:+55648610 Msa0649070:five_prime_UTR
AACAGTTGGGCTAATTCCCC+GGG 0.504414 4_3:-55649285 None:intergenic
CACTGCTCTAACCCTTGAGC+AGG 0.504462 4_3:-55651033 None:intergenic
CATACATTTAAGGAGGTAGC+TGG 0.508452 4_3:-55649130 None:intergenic
TCAGGATGGGGTTCAGATTG+TGG 0.509656 4_3:+55652037 Msa0649070:three_prime_UTR
GATTACTACTACAGTAATCC+TGG 0.514174 4_3:-55651056 None:intergenic
ATCAAGGAAGCAGGTGATGA+AGG 0.514451 4_3:+55651604 Msa0649070:CDS
ATTTGTCGGGACCACAGCCT+CGG 0.516229 4_3:+55650814 Msa0649070:CDS
AGTCAAATGCCCTTCTAGGC+TGG 0.516631 4_3:-55651526 None:intergenic
TGCTGTTCTTGCAAAGACAC+TGG 0.517048 4_3:+55651167 Msa0649070:CDS
AAAGTTGTCTCCAAAATTTG+TGG 0.522041 4_3:-55650929 None:intergenic
ACAGCTCTGATTTAATTTGT+CGG 0.522169 4_3:+55650800 Msa0649070:CDS
GAGCCTTGGGTCGTTTCCCG+GGG 0.527121 4_3:+55649269 Msa0649070:CDS
TTGTTGATAAGCAACGATCA+TGG 0.529822 4_3:-55651745 None:intergenic
TTTGTCGGGACCACAGCCTC+GGG 0.529845 4_3:+55650815 Msa0649070:CDS
ATCCCTGATTATTGTGGGCG+TGG 0.530254 4_3:+55651572 Msa0649070:CDS
GGGCATTTGACTCTGGAACT+AGG 0.533243 4_3:+55651537 Msa0649070:CDS
AAGCAGGTGATGAAGGAACA+TGG 0.536829 4_3:+55651611 Msa0649070:CDS
AGATCCATCCCTGATTATTG+TGG 0.539369 4_3:+55651566 Msa0649070:CDS
GATCCATCCCTGATTATTGT+GGG 0.542160 4_3:+55651567 Msa0649070:CDS
GAAGCAGCACCTTCACACTT+GGG 0.543360 4_3:-55651207 None:intergenic
ATATACCTTGAGGCGGTTGG+AGG 0.544794 4_3:-55648657 None:intergenic
ACTGTTTCAGGCCTGCTCAA+GGG 0.545418 4_3:+55651022 Msa0649070:CDS
TCAGAAATCCATGAAAGAGA+AGG 0.547366 4_3:+55648967 Msa0649070:CDS
CTGCGTTGTACCCGAGGCTG+TGG 0.548854 4_3:-55650825 None:intergenic
TACTAACCTGAAGCATTCCA+AGG 0.549098 4_3:-55651240 None:intergenic
TCAACATAATCAACAGGCTG+TGG 0.549517 4_3:-55651662 None:intergenic
GCTGATTTACAAAACAAGAT+GGG 0.550937 4_3:+55651860 Msa0649070:CDS
TATGAAATCAATAACCATGA+AGG 0.551452 4_3:+55651701 Msa0649070:CDS
CGAAAGTATGACCTAGTGAC+TGG 0.552272 4_3:-55650666 None:intergenic
TTACTTCTGCGTTGTACCCG+AGG 0.555658 4_3:-55650831 None:intergenic
AGCCCCAAAATGTGCACTGT+GGG 0.556411 4_3:+55650999 Msa0649070:CDS
AGGTTTAGTCAGAGGACTGA+TGG 0.559286 4_3:-55649334 None:intergenic
GTTCTTTGACCAGCCTAGAA+GGG 0.561727 4_3:+55651517 Msa0649070:CDS
CTAGGAAAGCAGAAGGTGGA+GGG 0.562417 4_3:-55650978 None:intergenic
CTTCAACAAATCGCCGCCGA+GGG 0.562779 4_3:+55648605 Msa0649070:five_prime_UTR
AACAAATCGCCGCCGAGGGT+AGG 0.562847 4_3:+55648609 Msa0649070:five_prime_UTR
TCAGTTGCTTCGAGAGTGGA+AGG 0.563881 4_3:+55649093 Msa0649070:CDS
ACCTTGAGGCGGTTGGAGGA+AGG 0.566975 4_3:-55648653 None:intergenic
AAAGACACTGGGAAAAGAAG+TGG 0.569750 4_3:+55651179 Msa0649070:CDS
TAATCAGTGTTAAACAGCCC+AGG 0.573081 4_3:-55649354 None:intergenic
TTGGCATGAATCAAGGAAGC+AGG 0.575003 4_3:+55651595 Msa0649070:CDS
TCCTTTAAATAGCTCAGGCA+TGG 0.578059 4_3:+55650717 Msa0649070:CDS
TGCATCAGTTGCTTCGAGAG+TGG 0.578160 4_3:+55649089 Msa0649070:CDS
TACTGATATTCTCATCATTG+AGG 0.580303 4_3:+55649060 Msa0649070:CDS
GGCGTGGTTGGCATGAATCA+AGG 0.581508 4_3:+55651588 Msa0649070:CDS
GAATTAGCCCAACTGTTGCA+AGG 0.582018 4_3:+55649291 Msa0649070:CDS
AAGCAGCACCTTCACACTTG+GGG 0.584353 4_3:-55651206 None:intergenic
TTGGAGGAAGGTTGTTCCGG+TGG 0.584750 4_3:-55648641 None:intergenic
AGCAGGTGATGAAGGAACAT+GGG 0.587152 4_3:+55651612 Msa0649070:CDS
AGATGATGGAAAATCTGTCA+AGG 0.589213 4_3:+55651910 Msa0649070:CDS
TCAAGGGTTAGAGCAGTGCC+AGG 0.589320 4_3:+55651038 Msa0649070:CDS
GACTTGTAGATATTTCAGGA+TGG 0.589529 4_3:+55652023 Msa0649070:three_prime_UTR
GCTGTTCTTGCAAAGACACT+GGG 0.597625 4_3:+55651168 Msa0649070:CDS
GGGTAGGGTTCTCATTCCAC+CGG 0.600797 4_3:+55648625 Msa0649070:five_prime_UTR
GATATGGATCACAACGCTGT+AGG 0.601822 4_3:+55650775 Msa0649070:CDS
TGACTGATTATTGTGGTGGT+AGG 0.602008 4_3:+55652089 Msa0649070:three_prime_UTR
AACAGCCCAGGTTTAGTCAG+AGG 0.603193 4_3:-55649342 None:intergenic
ACAAAAGAGATCATATTACA+TGG 0.603201 4_3:+55651637 Msa0649070:CDS
GTGGGCATCCCCAAGTGTGA+AGG 0.608412 4_3:+55651198 Msa0649070:CDS
ACCTTCCTCCAACCGCCTCA+AGG 0.610581 4_3:+55648652 Msa0649070:five_prime_UTR
GTATGATGAAAGAAAACTCA+GGG 0.611743 4_3:+55648921 Msa0649070:exon
TGAAAGACATACATTTAAGG+AGG 0.614720 4_3:-55649137 None:intergenic
AATATTCTGAGACTTGGCCT+CGG 0.616309 4_3:-55651939 None:intergenic
GGTATGATGAAAGAAAACTC+AGG 0.617008 4_3:+55648920 Msa0649070:exon
ACATGGTGAATAAGATTCAA+GGG 0.617617 4_3:+55648996 Msa0649070:CDS
TCACTAGGTCATACTTTCGA+AGG 0.619681 4_3:+55650670 Msa0649070:CDS
AAGACACTGGGAAAAGAAGT+GGG 0.621213 4_3:+55651180 Msa0649070:CDS
ACGCCCACAATAATCAGGGA+TGG 0.621905 4_3:-55651570 None:intergenic
AGCGTGAAACTGTTAGGGAG+TGG 0.622146 4_3:+55651492 Msa0649070:CDS
GGGGCTAGGAAAGCAGAAGG+TGG 0.622810 4_3:-55650982 None:intergenic
ACTAACCTGAAGCATTCCAA+GGG 0.625065 4_3:-55651239 None:intergenic
TTTGATAATAACCAGTCACT+AGG 0.626203 4_3:+55650655 Msa0649070:CDS
TTTGGGGCTAGGAAAGCAGA+AGG 0.630230 4_3:-55650985 None:intergenic
TGGAATGAGAACCCTACCCT+CGG 0.631803 4_3:-55648621 None:intergenic
GATGATGGAAAATCTGTCAA+GGG 0.632198 4_3:+55651911 Msa0649070:CDS
GCAAGAACAGCAGCAAACAA+AGG 0.637682 4_3:-55651156 None:intergenic
GTCTGTATAATGCACAACCA+TGG 0.640803 4_3:-55651775 None:intergenic
AACCACGCCCACAATAATCA+GGG 0.641167 4_3:-55651574 None:intergenic
GCAGGTGATGAAGGAACATG+GGG 0.643689 4_3:+55651613 Msa0649070:CDS
ACTTCAACAAATCGCCGCCG+AGG 0.645399 4_3:+55648604 Msa0649070:five_prime_UTR
ATTCCCCGGGAAACGACCCA+AGG 0.645718 4_3:-55649272 None:intergenic
AGCCTGTTGATTATGTTGAG+TGG 0.648782 4_3:+55651666 Msa0649070:CDS
TCAGTCCTCTGACTAAACCT+GGG 0.653984 4_3:+55649337 Msa0649070:CDS
TCTTTCACATCAATGCCACC+AGG 0.663784 4_3:-55651129 None:intergenic
GGAAAGCAGAAGGTGGAGGG+CGG 0.666552 4_3:-55650975 None:intergenic
GTAATGACTGATTATTGTGG+TGG 0.676509 4_3:+55652085 Msa0649070:three_prime_UTR
CAACATAATCAACAGGCTGT+GGG 0.679528 4_3:-55651661 None:intergenic
AGTAAGAATATACCTTGAGG+CGG 0.683868 4_3:-55648664 None:intergenic
ATGATGAAAGAAAACTCAGG+GGG 0.696312 4_3:+55648923 Msa0649070:CDS
GAAAGAGAAGGAGAGACACA+TGG 0.697093 4_3:+55648979 Msa0649070:CDS
TAGCCCCAAAATGTGCACTG+TGG 0.701568 4_3:+55650998 Msa0649070:CDS
GGTGGCATTGATGTGAAAGA+CGG 0.715531 4_3:+55651132 Msa0649070:CDS
AATGAGAACCCTACCCTCGG+CGG 0.726593 4_3:-55648618 None:intergenic
CTAACCTGAAGCATTCCAAG+GGG 0.741948 4_3:-55651238 None:intergenic
AAGGTAATGACTGATTATTG+TGG 0.742590 4_3:+55652082 Msa0649070:three_prime_UTR
TATGATGAAAGAAAACTCAG+GGG 0.752762 4_3:+55648922 Msa0649070:exon
CAGGTGATGAAGGAACATGG+GGG 0.853574 4_3:+55651614 Msa0649070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG - chr4_3:55649598-55649617 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr4_3:55649599-55649618 None:intergenic 0.0%
!! CAAAAAAAAAAAAAAAAAAG+AGG - chr4_3:55650501-55650520 None:intergenic 10.0%
!!! ATTGTTGATTTTTTTTTTGA+AGG + chr4_3:55648895-55648914 Msa0649070:intron 15.0%
!! ATGTATTTATATGTATATGT+TGG + chr4_3:55649231-55649250 Msa0649070:intron 15.0%
!! ATTAGAAAAGAAAACAATTA+GGG - chr4_3:55649680-55649699 None:intergenic 15.0%
!!! TAGATTAGTTTATTAAACTA+TGG - chr4_3:55649838-55649857 None:intergenic 15.0%
!!! ATGTTAAATATTTCCATTTT+AGG - chr4_3:55650211-55650230 None:intergenic 15.0%
!!! GAAGTATTTTTTTAATATTC+AGG - chr4_3:55651971-55651990 None:intergenic 15.0%
!!! TTGATTTTTTTTTTGAAGGA+AGG + chr4_3:55648899-55648918 Msa0649070:intron 20.0%
!! AATTGAAAGACATACATTTA+AGG - chr4_3:55649143-55649162 None:intergenic 20.0%
!!! TATCAGTAATGTTATTTTGA+TGG - chr4_3:55649380-55649399 None:intergenic 20.0%
!! ATATATATATAGGGGTTATA+CGG - chr4_3:55649589-55649608 None:intergenic 20.0%
!! CATTAGAAAAGAAAACAATT+AGG - chr4_3:55649681-55649700 None:intergenic 20.0%
!! CATAATTTAGAAAAGGAAAT+CGG - chr4_3:55649750-55649769 None:intergenic 20.0%
!! TTTGTGACATAATTTAGAAA+AGG - chr4_3:55649757-55649776 None:intergenic 20.0%
!!! TTTTTTAACCTTCTTGTTTA+CGG + chr4_3:55649918-55649937 Msa0649070:intron 20.0%
!! AAATATTTAACATAGAACCT+AGG + chr4_3:55650218-55650237 Msa0649070:intron 20.0%
!! AATATTTAACATAGAACCTA+GGG + chr4_3:55650219-55650238 Msa0649070:intron 20.0%
!! ACAGTTATATATATAAGCTA+TGG - chr4_3:55650245-55650264 None:intergenic 20.0%
!!! ATTCAGTATTTTCAGAAATA+TGG + chr4_3:55650335-55650354 Msa0649070:intron 20.0%
!! ATTAAATGTGATATAGAAGA+AGG + chr4_3:55651338-55651357 Msa0649070:intron 20.0%
!! TTATCAACAAAAATTAACCA+TGG + chr4_3:55651758-55651777 Msa0649070:CDS 20.0%
!!! TATTTTTTTAATATTCAGGC+AGG - chr4_3:55651967-55651986 None:intergenic 20.0%
!!! TGGAAATTTTTAACATTTCT+TGG + chr4_3:55652057-55652076 Msa0649070:three_prime_UTR 20.0%
!!! AAATTGCTTTTTGTATGTTT+GGG + chr4_3:55652190-55652209 Msa0649070:three_prime_UTR 20.0%
! TTGAATTTATAGTGATCGAT+CGG - chr4_3:55648696-55648715 None:intergenic 25.0%
! AACACAGATACAGATATTAT+TGG - chr4_3:55649179-55649198 None:intergenic 25.0%
! TATATTTCATATCTCTTTGC+AGG - chr4_3:55649212-55649231 None:intergenic 25.0%
!!! TAGCAATTATGAGTTTTATC+AGG + chr4_3:55649398-55649417 Msa0649070:CDS 25.0%
! GAGAATCTTCTATATATCTT+TGG + chr4_3:55649446-55649465 Msa0649070:intron 25.0%
! AAAAGAAAACAATTAGGGTA+AGG - chr4_3:55649675-55649694 None:intergenic 25.0%
! TTCTAAATTATGTCACAAAC+TGG + chr4_3:55649758-55649777 Msa0649070:intron 25.0%
!!! TTTTTAACCTTCTTGTTTAC+GGG + chr4_3:55649919-55649938 Msa0649070:intron 25.0%
! ACAAATGAATTTCAACAAGT+TGG - chr4_3:55650060-55650079 None:intergenic 25.0%
!! TTGTTGAAATTCATTTGTTG+AGG + chr4_3:55650062-55650081 Msa0649070:intron 25.0%
!! TTTCTTTAAGAGATAACAAC+TGG + chr4_3:55650609-55650628 Msa0649070:intron 25.0%
!! GATAATTACACCACAAATTT+TGG + chr4_3:55650919-55650938 Msa0649070:CDS 25.0%
! ACAAAAGAGATCATATTACA+TGG + chr4_3:55651637-55651656 Msa0649070:CDS 25.0%
! TATGAAATCAATAACCATGA+AGG + chr4_3:55651701-55651720 Msa0649070:CDS 25.0%
! GATAAAAAGAAAAGTCCTAA+AGG + chr4_3:55651815-55651834 Msa0649070:CDS 25.0%
!! TTTTTAACATTTCTTGGACA+AGG + chr4_3:55652063-55652082 Msa0649070:three_prime_UTR 25.0%
!!! CAAATTGCTTTTTGTATGTT+TGG + chr4_3:55652189-55652208 Msa0649070:three_prime_UTR 25.0%
!!! AATTGCTTTTTGTATGTTTG+GGG + chr4_3:55652191-55652210 Msa0649070:three_prime_UTR 25.0%
CAAAGTAAGAATATACCTTG+AGG - chr4_3:55648670-55648689 None:intergenic 30.0%
CATAACAAACTCATAGAAAG+TGG - chr4_3:55648865-55648884 None:intergenic 30.0%
GTATGATGAAAGAAAACTCA+GGG + chr4_3:55648921-55648940 Msa0649070:exon 30.0%
TATGATGAAAGAAAACTCAG+GGG + chr4_3:55648922-55648941 Msa0649070:exon 30.0%
ACATGGTGAATAAGATTCAA+GGG + chr4_3:55648996-55649015 Msa0649070:CDS 30.0%
TACTGATATTCTCATCATTG+AGG + chr4_3:55649060-55649079 Msa0649070:CDS 30.0%
TGAAAGACATACATTTAAGG+AGG - chr4_3:55649140-55649159 None:intergenic 30.0%
TGTATATGTTGGCATTCTAT+AGG + chr4_3:55649242-55649261 Msa0649070:intron 30.0%
!! CAATTATGAGTTTTATCAGG+AGG + chr4_3:55649401-55649420 Msa0649070:CDS 30.0%
TCACAATGTTAGTATTATGC+TGG + chr4_3:55649492-55649511 Msa0649070:intron 30.0%
CACAATGTTAGTATTATGCT+GGG + chr4_3:55649493-55649512 Msa0649070:intron 30.0%
CTAATCTAATTCCTATCATG+TGG + chr4_3:55649850-55649869 Msa0649070:intron 30.0%
TAAAAAATGTGTCAGCCAAT+AGG - chr4_3:55649905-55649924 None:intergenic 30.0%
!! TTTTAACCTTCTTGTTTACG+GGG + chr4_3:55649920-55649939 Msa0649070:intron 30.0%
TGAACTGAAAAATCAGAACA+AGG - chr4_3:55650029-55650048 None:intergenic 30.0%
!! GTTTTCTAAGAGTTCTCTTT+TGG - chr4_3:55650096-55650115 None:intergenic 30.0%
!! CTTAGAAAACATTTCTAGTC+AGG + chr4_3:55650106-55650125 Msa0649070:intron 30.0%
AAGTGGTTAATTAAGTGAAG+TGG - chr4_3:55650173-55650192 None:intergenic 30.0%
!! GATTATTAGCCTTTCATTTG+TGG + chr4_3:55650430-55650449 Msa0649070:intron 30.0%
TTAATCACACCACAAATGAA+AGG - chr4_3:55650442-55650461 None:intergenic 30.0%
GTTATCTCTTAAAGAAAAGC+AGG - chr4_3:55650606-55650625 None:intergenic 30.0%
! TTTGATAATAACCAGTCACT+AGG + chr4_3:55650655-55650674 Msa0649070:CDS 30.0%
! CAGTTGGATTTTCATTCATT+CGG + chr4_3:55650742-55650761 Msa0649070:CDS 30.0%
! ATTCGGTTTGAATCAAGATA+TGG + chr4_3:55650759-55650778 Msa0649070:CDS 30.0%
!! ACAGCTCTGATTTAATTTGT+CGG + chr4_3:55650800-55650819 Msa0649070:CDS 30.0%
GCTCAATTTAATCTTGAAGA+AGG + chr4_3:55650868-55650887 Msa0649070:CDS 30.0%
! GATGAGTATGATCAACTTTT+CGG + chr4_3:55650895-55650914 Msa0649070:CDS 30.0%
AAAGTTGTCTCCAAAATTTG+TGG - chr4_3:55650932-55650951 None:intergenic 30.0%
CGGATATTTGGAAGAATATT+AGG - chr4_3:55650958-55650977 None:intergenic 30.0%
ATCTTGCAAATTCTACAACT+AGG + chr4_3:55651309-55651328 Msa0649070:intron 30.0%
! ACTTGTTTCTTTCGTCTATT+TGG + chr4_3:55651402-55651421 Msa0649070:intron 30.0%
TTTCTTTCGTCTATTTGGTT+GGG + chr4_3:55651407-55651426 Msa0649070:intron 30.0%
!!! CGATCATGGTTATTTTTTTC+TGG - chr4_3:55651734-55651753 None:intergenic 30.0%
!! TGCTGATTTACAAAACAAGA+TGG + chr4_3:55651859-55651878 Msa0649070:CDS 30.0%
! GCTGATTTACAAAACAAGAT+GGG + chr4_3:55651860-55651879 Msa0649070:CDS 30.0%
ACTTGTAGATATTTCAGGAT+GGG + chr4_3:55652024-55652043 Msa0649070:three_prime_UTR 30.0%
AAGGTAATGACTGATTATTG+TGG + chr4_3:55652082-55652101 Msa0649070:three_prime_UTR 30.0%
AGTAAGAATATACCTTGAGG+CGG - chr4_3:55648667-55648686 None:intergenic 35.0%
AACCCTAGAATTTCTCAACT+AGG + chr4_3:55648729-55648748 Msa0649070:intron 35.0%
GACCTAGTTGAGAAATTCTA+GGG - chr4_3:55648734-55648753 None:intergenic 35.0%
AGACCTAGTTGAGAAATTCT+AGG - chr4_3:55648735-55648754 None:intergenic 35.0%
! AATGCCTATTTTGTGTGTCT+TGG + chr4_3:55648798-55648817 Msa0649070:intron 35.0%
GGTATGATGAAAGAAAACTC+AGG + chr4_3:55648920-55648939 Msa0649070:exon 35.0%
ATGATGAAAGAAAACTCAGG+GGG + chr4_3:55648923-55648942 Msa0649070:CDS 35.0%
TCAGAAATCCATGAAAGAGA+AGG + chr4_3:55648967-55648986 Msa0649070:CDS 35.0%
CACATGGTGAATAAGATTCA+AGG + chr4_3:55648995-55649014 Msa0649070:CDS 35.0%
TTCATATCTCTTTGCAGGAT+GGG - chr4_3:55649207-55649226 None:intergenic 35.0%
TTTCATATCTCTTTGCAGGA+TGG - chr4_3:55649208-55649227 None:intergenic 35.0%
TATGTTGGCATTCTATAGGA+TGG + chr4_3:55649246-55649265 Msa0649070:intron 35.0%
ATGTTGGCATTCTATAGGAT+GGG + chr4_3:55649247-55649266 Msa0649070:intron 35.0%
TGAGTTTCTTTCACTTGTTC+TGG + chr4_3:55649424-55649443 Msa0649070:intron 35.0%
TGTTAGTATTATGCTGGGAT+TGG + chr4_3:55649498-55649517 Msa0649070:intron 35.0%
ATATATAGGGGTTATACGGA+TGG - chr4_3:55649585-55649604 None:intergenic 35.0%
CGGAATAGTAGAACAATGTA+AGG - chr4_3:55649730-55649749 None:intergenic 35.0%
ATTAGACACAATCGTACAAC+CGG - chr4_3:55649787-55649806 None:intergenic 35.0%
! TTTAACCTTCTTGTTTACGG+GGG + chr4_3:55649921-55649940 Msa0649070:intron 35.0%
! AGTGATACACTTTGGGAATT+GGG - chr4_3:55649962-55649981 None:intergenic 35.0%
CACTTAATTAACCACTTGAG+TGG + chr4_3:55650176-55650195 Msa0649070:intron 35.0%
! GTGGTTAGTTGTTCCTAAAA+TGG + chr4_3:55650195-55650214 Msa0649070:intron 35.0%
TATATATAAGCTATGGCCCT+AGG - chr4_3:55650238-55650257 None:intergenic 35.0%
CTAATAATCGTACTAGCTGA+TGG - chr4_3:55650419-55650438 None:intergenic 35.0%
TCAAAACATTTCTGCACGAA+TGG - chr4_3:55650640-55650659 None:intergenic 35.0%
!! CAGCTCTGATTTAATTTGTC+GGG + chr4_3:55650801-55650820 Msa0649070:CDS 35.0%
GATTACTACTACAGTAATCC+TGG - chr4_3:55651059-55651078 None:intergenic 35.0%
! TAGTAGTAATCACGAGCTTT+TGG + chr4_3:55651068-55651087 Msa0649070:CDS 35.0%
GTTTCTTTCGTCTATTTGGT+TGG + chr4_3:55651406-55651425 Msa0649070:intron 35.0%
! TTGTTGATAAGCAACGATCA+TGG - chr4_3:55651748-55651767 None:intergenic 35.0%
TCCTAAAGGAAAAGTGACTA+AGG + chr4_3:55651829-55651848 Msa0649070:CDS 35.0%
!!! TCCTTAGTCACTTTTCCTTT+AGG - chr4_3:55651833-55651852 None:intergenic 35.0%
! TTGACAGATTTTCCATCATC+TGG - chr4_3:55651911-55651930 None:intergenic 35.0%
!! AGATGATGGAAAATCTGTCA+AGG + chr4_3:55651910-55651929 Msa0649070:CDS 35.0%
!! GATGATGGAAAATCTGTCAA+GGG + chr4_3:55651911-55651930 Msa0649070:CDS 35.0%
! GATGATTTTTGCCAAATGAC+TGG + chr4_3:55651995-55652014 Msa0649070:three_prime_UTR 35.0%
GACTTGTAGATATTTCAGGA+TGG + chr4_3:55652023-55652042 Msa0649070:three_prime_UTR 35.0%
CTTGTAGATATTTCAGGATG+GGG + chr4_3:55652025-55652044 Msa0649070:three_prime_UTR 35.0%
GTAATGACTGATTATTGTGG+TGG + chr4_3:55652085-55652104 Msa0649070:three_prime_UTR 35.0%
!! GCAACTACTTCTTCTGGAAT+TGG - chr4_3:55648561-55648580 None:intergenic 40.0%
TTTGACGCAACTACTTCTTC+TGG - chr4_3:55648567-55648586 None:intergenic 40.0%
GGAACCAAGACACACAAAAT+AGG - chr4_3:55648805-55648824 None:intergenic 40.0%
! ATTTTGTGTGTCTTGGTTCC+CGG + chr4_3:55648805-55648824 Msa0649070:intron 40.0%
GAAAACTCAGGGGGAAAATA+TGG + chr4_3:55648932-55648951 Msa0649070:CDS 40.0%
CTTTCTTGCAGACTGAAGAT+TGG - chr4_3:55649029-55649048 None:intergenic 40.0%
CAATCTTCAGTCTGCAAGAA+AGG + chr4_3:55649027-55649046 Msa0649070:CDS 40.0%
CATACATTTAAGGAGGTAGC+TGG - chr4_3:55649133-55649152 None:intergenic 40.0%
TCATATCTCTTTGCAGGATG+GGG - chr4_3:55649206-55649225 None:intergenic 40.0%
CTCAAATCCTTGCAACAGTT+GGG - chr4_3:55649301-55649320 None:intergenic 40.0%
TAATCAGTGTTAAACAGCCC+AGG - chr4_3:55649357-55649376 None:intergenic 40.0%
TAAGGAGTGGAGTGATAAGA+AGG - chr4_3:55649539-55649558 None:intergenic 40.0%
!! GCGTGACATGTTAATTTGTC+TGG + chr4_3:55649630-55649649 Msa0649070:intron 40.0%
! TTATGTCACAAACTGGTCTC+CGG + chr4_3:55649765-55649784 Msa0649070:intron 40.0%
AATTCCTATCATGTGGTGTG+CGG + chr4_3:55649857-55649876 Msa0649070:intron 40.0%
!!! TGCGGTCTTTTAGTTCATTC+AGG + chr4_3:55649875-55649894 Msa0649070:intron 40.0%
GTTCATTCAGGCAAACCTAT+TGG + chr4_3:55649887-55649906 Msa0649070:intron 40.0%
! ATACACTTTGGGAATTGGGT+GGG - chr4_3:55649958-55649977 None:intergenic 40.0%
! GAGTGATACACTTTGGGAAT+TGG - chr4_3:55649963-55649982 None:intergenic 40.0%
CCTAAAGAGATCAGATGACT+TGG - chr4_3:55649995-55650014 None:intergenic 40.0%
CCAAGTCATCTGATCTCTTT+AGG + chr4_3:55649992-55650011 Msa0649070:intron 40.0%
!! AGTCAGGACTAGTTAACCAT+TGG + chr4_3:55650122-55650141 Msa0649070:intron 40.0%
TAATCGTACTAGCTGATGGA+TGG - chr4_3:55650415-55650434 None:intergenic 40.0%
TCACTAGGTCATACTTTCGA+AGG + chr4_3:55650670-55650689 Msa0649070:CDS 40.0%
AGCAGTCCTTTAAATAGCTC+AGG + chr4_3:55650712-55650731 Msa0649070:CDS 40.0%
TCCTTTAAATAGCTCAGGCA+TGG + chr4_3:55650717-55650736 Msa0649070:CDS 40.0%
TTTGGCAAAAAGTGAGGATG+AGG + chr4_3:55651086-55651105 Msa0649070:CDS 40.0%
TTGGCAAAAAGTGAGGATGA+GGG + chr4_3:55651087-55651106 Msa0649070:CDS 40.0%
AAAGACACTGGGAAAAGAAG+TGG + chr4_3:55651179-55651198 Msa0649070:CDS 40.0%
AAGACACTGGGAAAAGAAGT+GGG + chr4_3:55651180-55651199 Msa0649070:CDS 40.0%
! ACTAACCTGAAGCATTCCAA+GGG - chr4_3:55651242-55651261 None:intergenic 40.0%
! TACTAACCTGAAGCATTCCA+AGG - chr4_3:55651243-55651262 None:intergenic 40.0%
TTCTTGAGCGTGAAACTGTT+AGG + chr4_3:55651486-55651505 Msa0649070:CDS 40.0%
TCTTGAGCGTGAAACTGTTA+GGG + chr4_3:55651487-55651506 Msa0649070:CDS 40.0%
AGATCCATCCCTGATTATTG+TGG + chr4_3:55651566-55651585 Msa0649070:CDS 40.0%
GATCCATCCCTGATTATTGT+GGG + chr4_3:55651567-55651586 Msa0649070:CDS 40.0%
CAACATAATCAACAGGCTGT+GGG - chr4_3:55651664-55651683 None:intergenic 40.0%
TCAACATAATCAACAGGCTG+TGG - chr4_3:55651665-55651684 None:intergenic 40.0%
! AGCCTGTTGATTATGTTGAG+TGG + chr4_3:55651666-55651685 Msa0649070:CDS 40.0%
TGCCACTCAACATAATCAAC+AGG - chr4_3:55651671-55651690 None:intergenic 40.0%
! TTTCTGGTAAGCAACCTTCA+TGG - chr4_3:55651718-55651737 None:intergenic 40.0%
GTCTGTATAATGCACAACCA+TGG - chr4_3:55651778-55651797 None:intergenic 40.0%
!! AATATTCTGAGACTTGGCCT+CGG - chr4_3:55651942-55651961 None:intergenic 40.0%
!! CGTCGACTTGTAGATATTTC+AGG + chr4_3:55652019-55652038 Msa0649070:three_prime_UTR 40.0%
TGACTGATTATTGTGGTGGT+AGG + chr4_3:55652089-55652108 Msa0649070:three_prime_UTR 40.0%
AGAATATACCTTGAGGCGGT+TGG - chr4_3:55648663-55648682 None:intergenic 45.0%
! CACTGTCATTTAACGAGTCC+GGG - chr4_3:55648826-55648845 None:intergenic 45.0%
! CCACTGTCATTTAACGAGTC+CGG - chr4_3:55648827-55648846 None:intergenic 45.0%
GTGTCTCTCCTTCTCTTTCA+TGG - chr4_3:55648978-55648997 None:intergenic 45.0%
GAAAGAGAAGGAGAGACACA+TGG + chr4_3:55648979-55648998 Msa0649070:CDS 45.0%
ATTCTATAGGATGGGAGCCT+TGG + chr4_3:55649255-55649274 Msa0649070:intron 45.0%
TTCTATAGGATGGGAGCCTT+GGG + chr4_3:55649256-55649275 Msa0649070:intron 45.0%
GAATTAGCCCAACTGTTGCA+AGG + chr4_3:55649291-55649310 Msa0649070:CDS 45.0%
CCTCAAATCCTTGCAACAGT+TGG - chr4_3:55649302-55649321 None:intergenic 45.0%
CCAACTGTTGCAAGGATTTG+AGG + chr4_3:55649299-55649318 Msa0649070:CDS 45.0%
AGGTTTAGTCAGAGGACTGA+TGG - chr4_3:55649337-55649356 None:intergenic 45.0%
ATCAGTCCTCTGACTAAACC+TGG + chr4_3:55649336-55649355 Msa0649070:CDS 45.0%
TCAGTCCTCTGACTAAACCT+GGG + chr4_3:55649337-55649356 Msa0649070:CDS 45.0%
GTGGAGTGATAAGAAGGTTG+AGG - chr4_3:55649533-55649552 None:intergenic 45.0%
GTAATCCCCCGTAAACAAGA+AGG - chr4_3:55649929-55649948 None:intergenic 45.0%
! TACACTTTGGGAATTGGGTG+GGG - chr4_3:55649957-55649976 None:intergenic 45.0%
! GATACACTTTGGGAATTGGG+TGG - chr4_3:55649959-55649978 None:intergenic 45.0%
GAGCTCGAGTGATACACTTT+GGG - chr4_3:55649969-55649988 None:intergenic 45.0%
AGAGCTCGAGTGATACACTT+TGG - chr4_3:55649970-55649989 None:intergenic 45.0%
AAAGTGTATCACTCGAGCTC+TGG + chr4_3:55649969-55649988 Msa0649070:intron 45.0%
GGAACAACTAACCACTCAAG+TGG - chr4_3:55650190-55650209 None:intergenic 45.0%
! CGAAAGTATGACCTAGTGAC+TGG - chr4_3:55650669-55650688 None:intergenic 45.0%
GCCATGCCTGAGCTATTTAA+AGG - chr4_3:55650721-55650740 None:intergenic 45.0%
GATATGGATCACAACGCTGT+AGG + chr4_3:55650775-55650794 Msa0649070:CDS 45.0%
! AGTCCCACAGTGCACATTTT+GGG - chr4_3:55651005-55651024 None:intergenic 45.0%
! CGAGCTTTTGGCAAAAAGTG+AGG + chr4_3:55651080-55651099 Msa0649070:CDS 45.0%
! AAGACTCCAATTTTGCGACC+TGG + chr4_3:55651111-55651130 Msa0649070:CDS 45.0%
TCTTTCACATCAATGCCACC+AGG - chr4_3:55651132-55651151 None:intergenic 45.0%
!! GGTGGCATTGATGTGAAAGA+CGG + chr4_3:55651132-55651151 Msa0649070:CDS 45.0%
GCAAGAACAGCAGCAAACAA+AGG - chr4_3:55651159-55651178 None:intergenic 45.0%
TGCTGTTCTTGCAAAGACAC+TGG + chr4_3:55651167-55651186 Msa0649070:CDS 45.0%
GCTGTTCTTGCAAAGACACT+GGG + chr4_3:55651168-55651187 Msa0649070:CDS 45.0%
! CTAACCTGAAGCATTCCAAG+GGG - chr4_3:55651241-55651260 None:intergenic 45.0%
TGTTCTTTGACCAGCCTAGA+AGG + chr4_3:55651516-55651535 Msa0649070:CDS 45.0%
GTTCTTTGACCAGCCTAGAA+GGG + chr4_3:55651517-55651536 Msa0649070:CDS 45.0%
AACCACGCCCACAATAATCA+GGG - chr4_3:55651577-55651596 None:intergenic 45.0%
TTGGCATGAATCAAGGAAGC+AGG + chr4_3:55651595-55651614 Msa0649070:CDS 45.0%
ATCAAGGAAGCAGGTGATGA+AGG + chr4_3:55651604-55651623 Msa0649070:CDS 45.0%
AAGCAGGTGATGAAGGAACA+TGG + chr4_3:55651611-55651630 Msa0649070:CDS 45.0%
AGCAGGTGATGAAGGAACAT+GGG + chr4_3:55651612-55651631 Msa0649070:CDS 45.0%
! GATTTTCCATCATCTGGCGA+CGG - chr4_3:55651905-55651924 None:intergenic 45.0%
ATCTGTCAAGGGAAAAACCG+AGG + chr4_3:55651922-55651941 Msa0649070:CDS 45.0%
GAGGCCAAGTCTCAGAATAT+TGG + chr4_3:55651941-55651960 Msa0649070:CDS 45.0%
!! CAGGCCAATATTCTGAGACT+TGG - chr4_3:55651948-55651967 None:intergenic 45.0%
!! ATATATATATATATATATAG+GGG - chr4_3:55649597-55649616 None:intergenic 5.0%
!! ATATATATATATATATATGT+CGG + chr4_3:55649601-55649620 Msa0649070:intron 5.0%
!! AAAAAAAAAAAAAAAAAAGA+GGG - chr4_3:55650500-55650519 None:intergenic 5.0%
TGGAATGAGAACCCTACCCT+CGG - chr4_3:55648624-55648643 None:intergenic 50.0%
ATATACCTTGAGGCGGTTGG+AGG - chr4_3:55648660-55648679 None:intergenic 50.0%
CCGGACTCGTTAAATGACAG+TGG + chr4_3:55648824-55648843 Msa0649070:intron 50.0%
TGCATCAGTTGCTTCGAGAG+TGG + chr4_3:55649089-55649108 Msa0649070:CDS 50.0%
TCAGTTGCTTCGAGAGTGGA+AGG + chr4_3:55649093-55649112 Msa0649070:CDS 50.0%
AACAGTTGGGCTAATTCCCC+GGG - chr4_3:55649288-55649307 None:intergenic 50.0%
CAACAGTTGGGCTAATTCCC+CGG - chr4_3:55649289-55649308 None:intergenic 50.0%
AACAGCCCAGGTTTAGTCAG+AGG - chr4_3:55649345-55649364 None:intergenic 50.0%
TAGGGGTTATACGGATGGCT+TGG - chr4_3:55649580-55649599 None:intergenic 50.0%
AAGACCGCACACCACATGAT+AGG - chr4_3:55649864-55649883 None:intergenic 50.0%
TTGGGAATTGGGTGGGGTTA+TGG - chr4_3:55649951-55649970 None:intergenic 50.0%
CACAACTCTCTGAGCACCAA+TGG - chr4_3:55650141-55650160 None:intergenic 50.0%
! CTGATGGATGGCTAGCTATG+GGG - chr4_3:55650403-55650422 None:intergenic 50.0%
! GCTGATGGATGGCTAGCTAT+GGG - chr4_3:55650404-55650423 None:intergenic 50.0%
! AGCTGATGGATGGCTAGCTA+TGG - chr4_3:55650405-55650424 None:intergenic 50.0%
TTACTTCTGCGTTGTACCCG+AGG - chr4_3:55650834-55650853 None:intergenic 50.0%
CTAGGAAAGCAGAAGGTGGA+GGG - chr4_3:55650981-55651000 None:intergenic 50.0%
! TTTGGGGCTAGGAAAGCAGA+AGG - chr4_3:55650988-55651007 None:intergenic 50.0%
!!! ACAGTGCACATTTTGGGGCT+AGG - chr4_3:55650999-55651018 None:intergenic 50.0%
TAGCCCCAAAATGTGCACTG+TGG + chr4_3:55650998-55651017 Msa0649070:CDS 50.0%
AGCCCCAAAATGTGCACTGT+GGG + chr4_3:55650999-55651018 Msa0649070:CDS 50.0%
! GTCCCACAGTGCACATTTTG+GGG - chr4_3:55651004-55651023 None:intergenic 50.0%
! CAGTCCCACAGTGCACATTT+TGG - chr4_3:55651006-55651025 None:intergenic 50.0%
ACTGTTTCAGGCCTGCTCAA+GGG + chr4_3:55651022-55651041 Msa0649070:CDS 50.0%
! ACTCCAATTTTGCGACCTGG+TGG + chr4_3:55651114-55651133 Msa0649070:CDS 50.0%
ATGCCACCAGGTCGCAAAAT+TGG - chr4_3:55651120-55651139 None:intergenic 50.0%
AAGCAGCACCTTCACACTTG+GGG - chr4_3:55651209-55651228 None:intergenic 50.0%
GAAGCAGCACCTTCACACTT+GGG - chr4_3:55651210-55651229 None:intergenic 50.0%
TGAAGCAGCACCTTCACACT+TGG - chr4_3:55651211-55651230 None:intergenic 50.0%
AAAGCCCCTTGGAATGCTTC+AGG + chr4_3:55651234-55651253 Msa0649070:CDS 50.0%
AGCGTGAAACTGTTAGGGAG+TGG + chr4_3:55651492-55651511 Msa0649070:CDS 50.0%
AGTCAAATGCCCTTCTAGGC+TGG - chr4_3:55651529-55651548 None:intergenic 50.0%
CCAGAGTCAAATGCCCTTCT+AGG - chr4_3:55651533-55651552 None:intergenic 50.0%
!! CCTAGAAGGGCATTTGACTC+TGG + chr4_3:55651530-55651549 Msa0649070:CDS 50.0%
!! GGGCATTTGACTCTGGAACT+AGG + chr4_3:55651537-55651556 Msa0649070:CDS 50.0%
ACGCCCACAATAATCAGGGA+TGG - chr4_3:55651573-55651592 None:intergenic 50.0%
ATCCCTGATTATTGTGGGCG+TGG + chr4_3:55651572-55651591 Msa0649070:CDS 50.0%
CAACCACGCCCACAATAATC+AGG - chr4_3:55651578-55651597 None:intergenic 50.0%
CTGATTATTGTGGGCGTGGT+TGG + chr4_3:55651576-55651595 Msa0649070:CDS 50.0%
GCAGGTGATGAAGGAACATG+GGG + chr4_3:55651613-55651632 Msa0649070:CDS 50.0%
CAGGTGATGAAGGAACATGG+GGG + chr4_3:55651614-55651633 Msa0649070:CDS 50.0%
CAAGTCGACGACCAGTCATT+TGG - chr4_3:55652009-55652028 None:intergenic 50.0%
TCAGGATGGGGTTCAGATTG+TGG + chr4_3:55652037-55652056 Msa0649070:three_prime_UTR 50.0%
ACTTCAACAAATCGCCGCCG+AGG + chr4_3:55648604-55648623 Msa0649070:five_prime_UTR 55.0%
CTTCAACAAATCGCCGCCGA+GGG + chr4_3:55648605-55648624 Msa0649070:five_prime_UTR 55.0%
AATGAGAACCCTACCCTCGG+CGG - chr4_3:55648621-55648640 None:intergenic 55.0%
GGGTAGGGTTCTCATTCCAC+CGG + chr4_3:55648625-55648644 Msa0649070:five_prime_UTR 55.0%
TTGGAGGAAGGTTGTTCCGG+TGG - chr4_3:55648644-55648663 None:intergenic 55.0%
CGGTTGGAGGAAGGTTGTTC+CGG - chr4_3:55648647-55648666 None:intergenic 55.0%
!! ATACGGATGGCTTGGTGGCT+GGG - chr4_3:55649572-55649591 None:intergenic 55.0%
!! TATACGGATGGCTTGGTGGC+TGG - chr4_3:55649573-55649592 None:intergenic 55.0%
! GGGTTATACGGATGGCTTGG+TGG - chr4_3:55649577-55649596 None:intergenic 55.0%
TAGCTCAGGCATGGCTCAGT+TGG + chr4_3:55650726-55650745 Msa0649070:CDS 55.0%
ATTTGTCGGGACCACAGCCT+CGG + chr4_3:55650814-55650833 Msa0649070:CDS 55.0%
GAAGGTGGAGGGCGGATATT+TGG - chr4_3:55650970-55650989 None:intergenic 55.0%
GCTAGGAAAGCAGAAGGTGG+AGG - chr4_3:55650982-55651001 None:intergenic 55.0%
GTGCACTGTGGGACTGTTTC+AGG + chr4_3:55651010-55651029 Msa0649070:CDS 55.0%
GACTGTTTCAGGCCTGCTCA+AGG + chr4_3:55651021-55651040 Msa0649070:CDS 55.0%
CACTGCTCTAACCCTTGAGC+AGG - chr4_3:55651036-55651055 None:intergenic 55.0%
TCAAGGGTTAGAGCAGTGCC+AGG + chr4_3:55651038-55651057 Msa0649070:CDS 55.0%
CTGCTTCAACGAAAGCCCCT+TGG + chr4_3:55651223-55651242 Msa0649070:CDS 55.0%
GGCGTGGTTGGCATGAATCA+AGG + chr4_3:55651588-55651607 Msa0649070:CDS 55.0%
AACAAATCGCCGCCGAGGGT+AGG + chr4_3:55648609-55648628 Msa0649070:five_prime_UTR 60.0%
ACAAATCGCCGCCGAGGGTA+GGG + chr4_3:55648610-55648629 Msa0649070:five_prime_UTR 60.0%
ACCTTCCTCCAACCGCCTCA+AGG + chr4_3:55648652-55648671 Msa0649070:five_prime_UTR 60.0%
ACCTTGAGGCGGTTGGAGGA+AGG - chr4_3:55648656-55648675 None:intergenic 60.0%
ATTCCCCGGGAAACGACCCA+AGG - chr4_3:55649275-55649294 None:intergenic 60.0%
!! TACGGATGGCTTGGTGGCTG+GGG - chr4_3:55649571-55649590 None:intergenic 60.0%
TTTGTCGGGACCACAGCCTC+GGG + chr4_3:55650815-55650834 Msa0649070:CDS 60.0%
GGAAAGCAGAAGGTGGAGGG+CGG - chr4_3:55650978-55650997 None:intergenic 60.0%
GGGGCTAGGAAAGCAGAAGG+TGG - chr4_3:55650985-55651004 None:intergenic 60.0%
GTGGGCATCCCCAAGTGTGA+AGG + chr4_3:55651198-55651217 Msa0649070:CDS 60.0%
GGGAGCCTTGGGTCGTTTCC+CGG + chr4_3:55649267-55649286 Msa0649070:CDS 65.0%
GGAGCCTTGGGTCGTTTCCC+GGG + chr4_3:55649268-55649287 Msa0649070:CDS 65.0%
GAGCCTTGGGTCGTTTCCCG+GGG + chr4_3:55649269-55649288 Msa0649070:CDS 65.0%
GGGGTGGGGGAGTTAAGGAG+TGG - chr4_3:55649552-55649571 None:intergenic 65.0%
TGGCTGGGGTGGGGGAGTTA+AGG - chr4_3:55649557-55649576 None:intergenic 65.0%
!! ATGGCTTGGTGGCTGGGGTG+GGG - chr4_3:55649566-55649585 None:intergenic 65.0%
!! GATGGCTTGGTGGCTGGGGT+GGG - chr4_3:55649567-55649586 None:intergenic 65.0%
CTGCGTTGTACCCGAGGCTG+TGG - chr4_3:55650828-55650847 None:intergenic 65.0%
GCTGCTCCGTCGCCAGATGA+TGG + chr4_3:55651896-55651915 Msa0649070:CDS 65.0%
!! TGGCTTGGTGGCTGGGGTGG+GGG - chr4_3:55649565-55649584 None:intergenic 70.0%
!! GGATGGCTTGGTGGCTGGGG+TGG - chr4_3:55649568-55649587 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55648546 55652254 55648546 ID=Msa0649070;Name=Msa0649070
chr4_3 mRNA 55648546 55652254 55648546 ID=Msa0649070-mRNA-1;Parent=Msa0649070;Name=Msa0649070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=134|1|1|1|1|1|5|275|500
chr4_3 exon 55648546 55648673 55648546 ID=Msa0649070-mRNA-1:exon:14243;Parent=Msa0649070-mRNA-1
chr4_3 exon 55648917 55649147 55648917 ID=Msa0649070-mRNA-1:exon:14244;Parent=Msa0649070-mRNA-1
chr4_3 exon 55649264 55649422 55649264 ID=Msa0649070-mRNA-1:exon:14245;Parent=Msa0649070-mRNA-1
chr4_3 exon 55650649 55651255 55650649 ID=Msa0649070-mRNA-1:exon:14246;Parent=Msa0649070-mRNA-1
chr4_3 exon 55651468 55652254 55651468 ID=Msa0649070-mRNA-1:exon:14247;Parent=Msa0649070-mRNA-1
chr4_3 five_prime_UTR 55648546 55648673 55648546 ID=Msa0649070-mRNA-1:five_prime_utr;Parent=Msa0649070-mRNA-1
chr4_3 five_prime_UTR 55648917 55648922 55648917 ID=Msa0649070-mRNA-1:five_prime_utr;Parent=Msa0649070-mRNA-1
chr4_3 CDS 55648923 55649147 55648923 ID=Msa0649070-mRNA-1:cds;Parent=Msa0649070-mRNA-1
chr4_3 CDS 55649264 55649422 55649264 ID=Msa0649070-mRNA-1:cds;Parent=Msa0649070-mRNA-1
chr4_3 CDS 55650649 55651255 55650649 ID=Msa0649070-mRNA-1:cds;Parent=Msa0649070-mRNA-1
chr4_3 CDS 55651468 55651979 55651468 ID=Msa0649070-mRNA-1:cds;Parent=Msa0649070-mRNA-1
chr4_3 three_prime_UTR 55651980 55652254 55651980 ID=Msa0649070-mRNA-1:three_prime_utr;Parent=Msa0649070-mRNA-1
Gene Sequence

>Msa0649070

ATGATGAAAGAAAACTCAGGGGGAAAATATGGATCTTCTTCTTCTCAGAAATCCATGAAAGAGAAGGAGAGACACATGGTGAATAAGATTCAAGGGATTTTCACCAATCTTCAGTCTGCAAGAAAGGAAAGCAGAGCTACTGATATTCTCATCATTGAGGAGCAGATGCATCAGTTGCTTCGAGAGTGGAAGGCAGAACTCGAGTCTCCAGCTACCTCCTTAAATGATGGGAGCCTTGGGTCGTTTCCCGGGGAATTAGCCCAACTGTTGCAAGGATTTGAGGAGAAAGACGACGCCATCAGTCCTCTGACTAAACCTGGGCTGTTTAACACTGATTACCATCAAAATAACATTACTGATAGCAATTATGAGTTTTATCAGGAGAAATGTTTTGATAATAACCAGTCACTAGGTCATACTTTCGAAGGCTCTGCTTCAACTCTGTTCAGCAGTCCTTTAAATAGCTCAGGCATGGCTCAGTTGGATTTTCATTCATTCGGTTTGAATCAAGATATGGATCACAACGCTGTAGGTCACAGCTCTGATTTAATTTGTCGGGACCACAGCCTCGGGTACAACGCAGAAGTAAAAAACTCAGAATCAGCTCAATTTAATCTTGAAGAAGGCTTTGATGAGTATGATCAACTTTTCGGAGATAATTACACCACAAATTTTGGAGACAACTTTATACCTAATATTCTTCCAAATATCCGCCCTCCACCTTCTGCTTTCCTAGCCCCAAAATGTGCACTGTGGGACTGTTTCAGGCCTGCTCAAGGGTTAGAGCAGTGCCAGGATTACTGTAGTAGTAATCACGAGCTTTTGGCAAAAAGTGAGGATGAGGGCAAGACTCCAATTTTGCGACCTGGTGGCATTGATGTGAAAGACGGTCCTTTGTTTGCTGCTGTTCTTGCAAAGACACTGGGAAAAGAAGTGGGCATCCCCAAGTGTGAAGGTGCTGCTTCAACGAAAGCCCCTTGGAATGCTTCAGAGTTGTTTGACATTTCTCTTCTTGAGCGTGAAACTGTTAGGGAGTGGCTGTTCTTTGACCAGCCTAGAAGGGCATTTGACTCTGGAACTAGGAAACAGAGATCCATCCCTGATTATTGTGGGCGTGGTTGGCATGAATCAAGGAAGCAGGTGATGAAGGAACATGGGGGACAAAAGAGATCATATTACATGGACCCACAGCCTGTTGATTATGTTGAGTGGCATTTGTACGAGTATGAAATCAATAACCATGAAGGTTGCTTACCAGAAAAAAATAACCATGATCGTTGCTTATCAACAAAAATTAACCATGGTTGTGCATTATACAGACTAGAATTAAAGCGTGTAGATAAAAAGAAAAGTCCTAAAGGAAAAGTGACTAAGGAATCACTTGCTGATTTACAAAACAAGATGGGAAAGCTAACTGCTGCTGCTCCGTCGCCAGATGATGGAAAATCTGTCAAGGGAAAAACCGAGGCCAAGTCTCAGAATATTGGCCTGCCTGAATATTAA
Protein sequence

>Msa0649070

MMKENSGGKYGSSSSQKSMKEKERHMVNKIQGIFTNLQSARKESRATDILIIEEQMHQLLREWKAELESPATSLNDGSLGSFPGELAQLLQGFEEKDDAISPLTKPGLFNTDYHQNNITDSNYEFYQEKCFDNNQSLGHTFEGSASTLFSSPLNSSGMAQLDFHSFGLNQDMDHNAVGHSSDLICRDHSLGYNAEVKNSESAQFNLEEGFDEYDQLFGDNYTTNFGDNFIPNILPNIRPPPSAFLAPKCALWDCFRPAQGLEQCQDYCSSNHELLAKSEDEGKTPILRPGGIDVKDGPLFAAVLAKTLGKEVGIPKCEGAASTKAPWNASELFDISLLERETVREWLFFDQPRRAFDSGTRKQRSIPDYCGRGWHESRKQVMKEHGGQKRSYYMDPQPVDYVEWHLYEYEINNHEGCLPEKNNHDRCLSTKINHGCALYRLELKRVDKKKSPKGKVTKESLADLQNKMGKLTAAAPSPDDGKSVKGKTEAKSQNIGLPEY*