AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0649340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649340 MtrunA17_Chr4g0041151 92.857 308 13 2 1 305 1 302 0.0 511
Msa0649340 MtrunA17_Chr2g0283871 52.090 311 119 7 19 306 11 314 9.43e-87 263
Msa0649340 MtrunA17_Chr8g0344681 38.567 293 144 7 27 300 64 339 3.07e-45 157
Msa0649340 MtrunA17_Chr2g0325841 33.924 395 159 11 8 308 23 409 1.35e-39 148
Msa0649340 MtrunA17_Chr2g0331931 30.345 290 144 7 14 296 255 493 2.49e-26 108
Msa0649340 MtrunA17_Chr1g0179531 37.255 102 57 3 31 131 133 228 1.53e-16 80.1
Msa0649340 MtrunA17_Chr6g0485241 38.947 95 52 2 31 124 130 219 1.87e-16 79.0
Msa0649340 MtrunA17_Chr3g0082261 25.524 286 177 9 26 294 33 299 7.96e-15 73.9
Msa0649340 MtrunA17_Chr4g0066271 35.922 103 63 2 30 131 116 216 2.15e-14 73.2
Msa0649340 MtrunA17_Chr1g0164461 33.333 102 60 2 26 127 33 126 4.20e-12 63.9
Msa0649340 MtrunA17_Chr7g0250201 41.429 70 40 1 30 99 45 113 3.95e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0649340 AT3G58630.2 47.239 326 123 9 1 302 1 301 6.67e-74 230
Msa0649340 AT3G58630.1 47.239 326 123 9 1 302 1 301 1.07e-73 230
Msa0649340 AT3G11100.1 40.614 293 120 7 13 305 9 247 3.79e-49 164
Msa0649340 AT5G05550.3 40.143 279 113 6 27 305 20 244 3.42e-48 162
Msa0649340 AT5G05550.1 40.143 279 113 6 27 305 20 244 4.14e-48 162
Msa0649340 AT5G05550.2 40.288 278 112 6 27 304 20 243 5.02e-48 161
Msa0649340 AT3G14180.1 59.615 104 38 2 27 130 80 179 2.78e-34 130
Msa0649340 AT1G54060.1 51.485 101 44 2 27 127 90 185 8.38e-22 95.1
Msa0649340 AT3G24490.1 27.925 265 139 6 31 295 90 302 1.01e-21 94.0
Msa0649340 AT3G10030.2 39.669 121 66 3 16 134 144 259 1.54e-20 92.4
Msa0649340 AT3G10030.1 39.669 121 66 3 16 134 144 259 1.70e-20 92.4
Msa0649340 AT3G54390.1 28.082 292 170 9 19 302 23 282 1.07e-16 79.3
Msa0649340 AT3G54390.2 28.082 292 170 9 19 302 39 298 1.24e-16 79.3
Msa0649340 AT2G44730.1 34.737 95 59 2 30 123 63 155 5.87e-12 66.2

Find 110 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGAAACCAAACTCCTTA+TGG 0.211114 4_3:+55960215 None:intergenic
TGAAACGCGGTTGTTGAGTT+TGG 0.293921 4_3:+55960929 None:intergenic
GGCTGCTGCGGCGGCGGCTG+AGG 0.328447 4_3:-55960296 Msa0649340:CDS
ACAGAGACAAATGGTGGAAT+TGG 0.329589 4_3:-55960134 Msa0649340:CDS
GATGCAGTTTGTGAAGGATT+TGG 0.330097 4_3:-55960101 Msa0649340:CDS
CTTCCACCCTCATCGACGCC+TGG 0.342555 4_3:-55960801 Msa0649340:CDS
AACTCAACAACCGCGTTTCA+TGG 0.344366 4_3:-55960926 Msa0649340:exon
ACGTCGCGCTTTCTTGTTAC+CGG 0.348904 4_3:+55960690 None:intergenic
GACGAAGGTTACCGCGGTTA+AGG 0.349488 4_3:+55960761 None:intergenic
TCCCCGTCCGCGAAGACTGC+TGG 0.376207 4_3:-55960837 Msa0649340:CDS
GGTGGAGACGGTGGAGATTG+AGG 0.380464 4_3:+55960457 None:intergenic
CGCGGCGGCTGCTGCGGCGG+CGG 0.380481 4_3:-55960302 Msa0649340:CDS
GATGGGACCCATAAGGAGTT+TGG 0.382677 4_3:-55960223 Msa0649340:CDS
TCTGAAACCAAACTCCTTAT+GGG 0.394233 4_3:+55960216 None:intergenic
GTAACCTTCGTCAGAAAACT+TGG 0.396096 4_3:-55960750 Msa0649340:CDS
CTGGTAACCGCCGTCGGATT+CGG 0.403172 4_3:+55960597 None:intergenic
ATCGTTCCGGCGGAATTTCT+CGG 0.404517 4_3:-55960329 Msa0649340:CDS
GAGGGTGGAAGTTGCGTCTT+CGG 0.412190 4_3:+55960813 None:intergenic
TCTTCTTTAACGTGTCGATT+CGG 0.420026 4_3:+55960647 None:intergenic
AGTACAAGATCGAGAAAGCT+AGG 0.431421 4_3:-55960624 Msa0649340:CDS
TTCCACCCTCATCGACGCCT+GGG 0.432995 4_3:-55960800 Msa0649340:CDS
AAACGCACTAAACGTGCTTC+TGG 0.443118 4_3:-55960025 Msa0649340:CDS
GTGTGGAGTCAGAGGAATGG+AGG 0.449241 4_3:-55960267 Msa0649340:CDS
GTCCAGCAGTCTTCGCGGAC+GGG 0.450561 4_3:+55960835 None:intergenic
ACTAAACGTGCTTCTGGTTC+CGG 0.451057 4_3:-55960019 Msa0649340:intron
GGCGGCGTGGACGTCGTTGA+CGG 0.453788 4_3:+55960711 None:intergenic
CATCCGGTCGGTCCCCGATC+CGG 0.459199 4_3:-55960391 Msa0649340:CDS
AAAGAGACGAAGCATCGTTC+CGG 0.461522 4_3:-55960342 Msa0649340:CDS
TGGTTGCTTGCAGCAGAAGT+TGG 0.477729 4_3:-55959868 Msa0649340:intron
TGTGGAGTCAGAGGAATGGA+GGG 0.481728 4_3:-55960266 Msa0649340:CDS
GACGGTGGAGATTGAGGAGG+TGG 0.483700 4_3:+55960463 None:intergenic
GGTTGCTTGCAGCAGAAGTT+GGG 0.485653 4_3:-55959867 Msa0649340:intron
GTTCGCGGCGGCTGCTGCGG+CGG 0.489343 4_3:-55960305 Msa0649340:CDS
GGCGTTCGCGGCGGCTGCTG+CGG 0.494203 4_3:-55960308 Msa0649340:CDS
ACCGTCTCCACCGTCGCCTC+CGG 0.494561 4_3:-55960428 Msa0649340:CDS
TCCAGCAGTCTTCGCGGACG+GGG 0.495685 4_3:+55960836 None:intergenic
TGGAGTCAGAGGAATGGAGG+GGG 0.503575 4_3:-55960264 Msa0649340:CDS
ACTCGTCTTGACGTTCTCAT+CGG 0.505614 4_3:-55960556 Msa0649340:CDS
CAGTCTTCGCGGACGGGGAA+CGG 0.508470 4_3:+55960841 None:intergenic
GCGGAATTTCTCGGCGTTCG+CGG 0.513561 4_3:-55960320 Msa0649340:CDS
GTTGATAGGTGACGGAGCTC+CGG 0.518538 4_3:+55960894 None:intergenic
CGCGGCGGAACGGAGTTGAT+AGG 0.521754 4_3:+55960880 None:intergenic
TCTCCCCGCCGGTGAATGTA+CGG 0.525928 4_3:-55960510 Msa0649340:CDS
AGAAAACGATGGGACCCATA+AGG 0.527107 4_3:-55960230 Msa0649340:CDS
GGTCCAGCAGTCTTCGCGGA+CGG 0.531762 4_3:+55960834 None:intergenic
GACGGTGGAGACGGTGGAGA+AGG 0.533943 4_3:+55960436 None:intergenic
GCCGGAGGCGACGGTGGAGA+CGG 0.537471 4_3:+55960427 None:intergenic
GGAGTAGACCGTACATTCAC+CGG 0.542070 4_3:+55960502 None:intergenic
TCAGAGAATGCAGTTATACA+TGG 0.544592 4_3:-55960074 Msa0649340:CDS
GGCAGAAAGTGTGGAGTCAG+AGG 0.545717 4_3:-55960275 Msa0649340:CDS
GTTCCGGATCGGGGACCGAC+CGG 0.547076 4_3:+55960388 None:intergenic
ATTATCCACGCCGGAGGCGA+CGG 0.547703 4_3:+55960418 None:intergenic
GTGGACGTCGTTGACGGCGT+CGG 0.549602 4_3:+55960717 None:intergenic
GCAGAGGATGCAGTTTGTGA+AGG 0.549708 4_3:-55960107 Msa0649340:CDS
GGCGATGACGACGGAAGACG+CGG 0.549924 4_3:+55960862 None:intergenic
CTTCGGTCCAGCAGTCTTCG+CGG 0.552125 4_3:+55960830 None:intergenic
GTCGAGGTAGCGTTCACCCC+AGG 0.553968 4_3:+55960783 None:intergenic
ACGGCGGTTACCAGAGTCCC+TGG 0.554940 4_3:-55960588 Msa0649340:CDS
GGTGGAGACGGTGGAGAAGG+TGG 0.555662 4_3:+55960439 None:intergenic
TGGTTTCAGAGAGCTCGCTC+AGG 0.555951 4_3:-55960203 Msa0649340:CDS
AAAGTGTGGAGTCAGAGGAA+TGG 0.557513 4_3:-55960270 Msa0649340:CDS
AGCTTCAAAACAGAGACAAA+TGG 0.558007 4_3:-55960143 Msa0649340:CDS
CGACGGAAGACGCGGCGGAA+CGG 0.559377 4_3:+55960870 None:intergenic
GTCAACGACGTCCACGCCGC+CGG 0.559754 4_3:-55960709 Msa0649340:CDS
GACGGTGGAGAAGGTGGAGA+CGG 0.562074 4_3:+55960445 None:intergenic
GGCGTGGATAATCTCTCATC+CGG 0.563671 4_3:-55960407 Msa0649340:CDS
TTCACCCCAGGCGTCGATGA+GGG 0.566151 4_3:+55960795 None:intergenic
GGTGGACGTTTGACGACGGT+TGG 0.571165 4_3:+55960481 None:intergenic
GGTTACCGCGGTTAAGGTCG+AGG 0.573221 4_3:+55960767 None:intergenic
ACCCCAGGCGTCGATGAGGG+TGG 0.576167 4_3:+55960798 None:intergenic
CTCCACCGTCGCCTCCGGCG+TGG 0.577896 4_3:-55960423 Msa0649340:CDS
GTACAAGATCGAGAAAGCTA+GGG 0.590074 4_3:-55960623 Msa0649340:CDS
ACGGGGAACGGCGATGACGA+CGG 0.590204 4_3:+55960853 None:intergenic
GGCGGACGGAGGCTAACTGA+TGG 0.596962 4_3:+55960981 None:intergenic
GAGACGAAGCATCGTTCCGG+CGG 0.597085 4_3:-55960339 Msa0649340:CDS
TGGATAATCTCTCATCCGGT+CGG 0.599124 4_3:-55960403 Msa0649340:CDS
CGTTTCATGGACATCATCGC+CGG 0.603278 4_3:-55960913 Msa0649340:exon
ATCCACGCCGGAGGCGACGG+TGG 0.604964 4_3:+55960421 None:intergenic
TGTTGAGTTTGGAAAATCGA+CGG 0.605500 4_3:+55960940 None:intergenic
AGAAAGGAAGAGAAAACGAT+GGG 0.606592 4_3:-55960240 Msa0649340:CDS
CTTTCTTGTTACCGGCGGCG+TGG 0.607096 4_3:+55960698 None:intergenic
TCGTCAGAAAACTTGGCAAG+AGG 0.608905 4_3:-55960743 Msa0649340:CDS
GTGGAGTCAGAGGAATGGAG+GGG 0.611126 4_3:-55960265 Msa0649340:CDS
TAGACCGTACATTCACCGGC+GGG 0.615042 4_3:+55960506 None:intergenic
GTTCACCCCAGGCGTCGATG+AGG 0.617071 4_3:+55960794 None:intergenic
GGAGGCGACGGTGGAGACGG+TGG 0.619172 4_3:+55960430 None:intergenic
TGGTGGAATTGGAGAAGCAG+AGG 0.620275 4_3:-55960123 Msa0649340:CDS
GGCGGCTGAGGCAGAAAGTG+TGG 0.620535 4_3:-55960284 Msa0649340:CDS
TCCACCCTCATCGACGCCTG+GGG 0.621538 4_3:-55960799 Msa0649340:CDS
GGAACGGAGTTGATAGGTGA+CGG 0.622230 4_3:+55960886 None:intergenic
GGGACTCTGGTAACCGCCGT+CGG 0.624801 4_3:+55960591 None:intergenic
GAATTTCTCGGCGTTCGCGG+CGG 0.637732 4_3:-55960317 Msa0649340:CDS
GGTGGAGAAGGTGGAGACGG+TGG 0.638582 4_3:+55960448 None:intergenic
AAGAAAGGAAGAGAAAACGA+TGG 0.648071 4_3:-55960241 Msa0649340:CDS
AGGAGGTGGACGTTTGACGA+CGG 0.650309 4_3:+55960477 None:intergenic
GGAGACGGTGGAGATTGAGG+AGG 0.652907 4_3:+55960460 None:intergenic
CGAACGCCGAGAAATTCCGC+CGG 0.653177 4_3:+55960323 None:intergenic
GCAGTTATACATGGAAACGC+AGG 0.653381 4_3:-55960065 Msa0649340:CDS
TGAGAGATTATCCACGCCGG+AGG 0.660526 4_3:+55960412 None:intergenic
GAGTTTGGAAAATCGACGGA+CGG 0.661497 4_3:+55960944 None:intergenic
TTCAAAACAGAGACAAATGG+TGG 0.662111 4_3:-55960140 Msa0649340:CDS
GCTAGGGTTTCCGAATCCGA+CGG 0.665069 4_3:-55960607 Msa0649340:CDS
TCGCGCTTTCTTGTTACCGG+CGG 0.665856 4_3:+55960693 None:intergenic
AGGGTTTCCGAATCCGACGG+CGG 0.672515 4_3:-55960604 Msa0649340:CDS
GATGACGACGGAAGACGCGG+CGG 0.700874 4_3:+55960865 None:intergenic
AGACCGTACATTCACCGGCG+GGG 0.706976 4_3:+55960507 None:intergenic
CGCTACCTCGACCTTAACCG+CGG 0.709531 4_3:-55960772 Msa0649340:CDS
GCGATGATGTCCATGAAACG+CGG 0.716790 4_3:+55960916 None:intergenic
GTAGACCGTACATTCACCGG+CGG 0.721299 4_3:+55960505 None:intergenic
GGATGAGAGATTATCCACGC+CGG 0.738065 4_3:+55960409 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATGATCATAAATTTGAAAC+AGG + chr4_3:55960889-55960908 None:intergenic 20.0%
!! CTTATGCTTAATGATTATTA+GGG - chr4_3:55960944-55960963 Msa0649340:five_prime_UTR 20.0%
!! TTATGCTTAATGATTATTAG+GGG - chr4_3:55960945-55960964 Msa0649340:five_prime_UTR 20.0%
!! ATCACATTAATGTGTAAATT+TGG - chr4_3:55960975-55960994 Msa0649340:five_prime_UTR 20.0%
!!! TGTGTAAATTTGGTTTTATA+TGG - chr4_3:55960985-55961004 Msa0649340:five_prime_UTR 20.0%
!!! TATTTTGTTACTTGTGATAA+TGG - chr4_3:55961029-55961048 Msa0649340:five_prime_UTR 20.0%
!!! AATGATCATAAATTTGAAAC+AGG + chr4_3:55960889-55960908 None:intergenic 20.0%
!! CTTATGCTTAATGATTATTA+GGG - chr4_3:55960944-55960963 Msa0649340:five_prime_UTR 20.0%
!! TTATGCTTAATGATTATTAG+GGG - chr4_3:55960945-55960964 Msa0649340:five_prime_UTR 20.0%
!! ATCACATTAATGTGTAAATT+TGG - chr4_3:55960975-55960994 Msa0649340:five_prime_UTR 20.0%
!!! TGTGTAAATTTGGTTTTATA+TGG - chr4_3:55960985-55961004 Msa0649340:five_prime_UTR 20.0%
!!! TATTTTGTTACTTGTGATAA+TGG - chr4_3:55961029-55961048 Msa0649340:five_prime_UTR 20.0%
! GCTTATGCTTAATGATTATT+AGG - chr4_3:55960943-55960962 Msa0649340:five_prime_UTR 25.0%
! GCTTATGCTTAATGATTATT+AGG - chr4_3:55960943-55960962 Msa0649340:five_prime_UTR 25.0%
TGTTGAGTTTGGAAAATCGA+CGG + chr4_3:55959936-55959955 None:intergenic 35.0%
!! TCTTCTTTAACGTGTCGATT+CGG + chr4_3:55960229-55960248 None:intergenic 35.0%
AAGAAAGGAAGAGAAAACGA+TGG - chr4_3:55960632-55960651 Msa0649340:CDS 35.0%
AGAAAGGAAGAGAAAACGAT+GGG - chr4_3:55960633-55960652 Msa0649340:CDS 35.0%
! TCTGAAACCAAACTCCTTAT+GGG + chr4_3:55960660-55960679 None:intergenic 35.0%
AGCTTCAAAACAGAGACAAA+TGG - chr4_3:55960730-55960749 Msa0649340:CDS 35.0%
TTCAAAACAGAGACAAATGG+TGG - chr4_3:55960733-55960752 Msa0649340:CDS 35.0%
TCAGAGAATGCAGTTATACA+TGG - chr4_3:55960799-55960818 Msa0649340:CDS 35.0%
TGTTGAGTTTGGAAAATCGA+CGG + chr4_3:55959936-55959955 None:intergenic 35.0%
!! TCTTCTTTAACGTGTCGATT+CGG + chr4_3:55960229-55960248 None:intergenic 35.0%
AAGAAAGGAAGAGAAAACGA+TGG - chr4_3:55960632-55960651 Msa0649340:CDS 35.0%
AGAAAGGAAGAGAAAACGAT+GGG - chr4_3:55960633-55960652 Msa0649340:CDS 35.0%
! TCTGAAACCAAACTCCTTAT+GGG + chr4_3:55960660-55960679 None:intergenic 35.0%
AGCTTCAAAACAGAGACAAA+TGG - chr4_3:55960730-55960749 Msa0649340:CDS 35.0%
TTCAAAACAGAGACAAATGG+TGG - chr4_3:55960733-55960752 Msa0649340:CDS 35.0%
TCAGAGAATGCAGTTATACA+TGG - chr4_3:55960799-55960818 Msa0649340:CDS 35.0%
GTAACCTTCGTCAGAAAACT+TGG - chr4_3:55960123-55960142 Msa0649340:CDS 40.0%
AGTACAAGATCGAGAAAGCT+AGG - chr4_3:55960249-55960268 Msa0649340:CDS 40.0%
GTACAAGATCGAGAAAGCTA+GGG - chr4_3:55960250-55960269 Msa0649340:CDS 40.0%
ACGTCAAGACGAGTGAAAAA+CGG + chr4_3:55960311-55960330 None:intergenic 40.0%
!! CTCTGAAACCAAACTCCTTA+TGG + chr4_3:55960661-55960680 None:intergenic 40.0%
! ACAGAGACAAATGGTGGAAT+TGG - chr4_3:55960739-55960758 Msa0649340:CDS 40.0%
GATGCAGTTTGTGAAGGATT+TGG - chr4_3:55960772-55960791 Msa0649340:CDS 40.0%
TTGAAACAGGTTAAGCTCAC+CGG + chr4_3:55960876-55960895 None:intergenic 40.0%
GTAACCTTCGTCAGAAAACT+TGG - chr4_3:55960123-55960142 Msa0649340:CDS 40.0%
AGTACAAGATCGAGAAAGCT+AGG - chr4_3:55960249-55960268 Msa0649340:CDS 40.0%
GTACAAGATCGAGAAAGCTA+GGG - chr4_3:55960250-55960269 Msa0649340:CDS 40.0%
ACGTCAAGACGAGTGAAAAA+CGG + chr4_3:55960311-55960330 None:intergenic 40.0%
!! CTCTGAAACCAAACTCCTTA+TGG + chr4_3:55960661-55960680 None:intergenic 40.0%
! ACAGAGACAAATGGTGGAAT+TGG - chr4_3:55960739-55960758 Msa0649340:CDS 40.0%
GATGCAGTTTGTGAAGGATT+TGG - chr4_3:55960772-55960791 Msa0649340:CDS 40.0%
TTGAAACAGGTTAAGCTCAC+CGG + chr4_3:55960876-55960895 None:intergenic 40.0%
GAGTTTGGAAAATCGACGGA+CGG + chr4_3:55959932-55959951 None:intergenic 45.0%
TGAAACGCGGTTGTTGAGTT+TGG + chr4_3:55959947-55959966 None:intergenic 45.0%
AACTCAACAACCGCGTTTCA+TGG - chr4_3:55959947-55959966 Msa0649340:intron 45.0%
! TTTTCTGACGAAGGTTACCG+CGG + chr4_3:55960121-55960140 None:intergenic 45.0%
! CTTGCCAAGTTTTCTGACGA+AGG + chr4_3:55960130-55960149 None:intergenic 45.0%
TCGTCAGAAAACTTGGCAAG+AGG - chr4_3:55960130-55960149 Msa0649340:CDS 45.0%
! TCGGTTTTTGCACTGAACGT+CGG + chr4_3:55960210-55960229 None:intergenic 45.0%
ACTCGTCTTGACGTTCTCAT+CGG - chr4_3:55960317-55960336 Msa0649340:CDS 45.0%
! TCTCATCGGCGATACTTTTC+CGG - chr4_3:55960331-55960350 Msa0649340:CDS 45.0%
TGGATAATCTCTCATCCGGT+CGG - chr4_3:55960470-55960489 Msa0649340:CDS 45.0%
! ACGTTTTTGTGTTCCGGATC+GGG + chr4_3:55960498-55960517 None:intergenic 45.0%
! GACGTTTTTGTGTTCCGGAT+CGG + chr4_3:55960499-55960518 None:intergenic 45.0%
ATCCGGAACACAAAAACGTC+CGG - chr4_3:55960499-55960518 Msa0649340:CDS 45.0%
AACACAAAAACGTCCGGCAA+TGG - chr4_3:55960505-55960524 Msa0649340:CDS 45.0%
!! AAAGAGACGAAGCATCGTTC+CGG - chr4_3:55960531-55960550 Msa0649340:CDS 45.0%
AAAGTGTGGAGTCAGAGGAA+TGG - chr4_3:55960603-55960622 Msa0649340:CDS 45.0%
AGAAAACGATGGGACCCATA+AGG - chr4_3:55960643-55960662 Msa0649340:CDS 45.0%
GCAGTTATACATGGAAACGC+AGG - chr4_3:55960808-55960827 Msa0649340:CDS 45.0%
AAACGCACTAAACGTGCTTC+TGG - chr4_3:55960848-55960867 Msa0649340:CDS 45.0%
!! ACTAAACGTGCTTCTGGTTC+CGG - chr4_3:55960854-55960873 Msa0649340:CDS 45.0%
GAGTTTGGAAAATCGACGGA+CGG + chr4_3:55959932-55959951 None:intergenic 45.0%
TGAAACGCGGTTGTTGAGTT+TGG + chr4_3:55959947-55959966 None:intergenic 45.0%
AACTCAACAACCGCGTTTCA+TGG - chr4_3:55959947-55959966 Msa0649340:intron 45.0%
! TTTTCTGACGAAGGTTACCG+CGG + chr4_3:55960121-55960140 None:intergenic 45.0%
! CTTGCCAAGTTTTCTGACGA+AGG + chr4_3:55960130-55960149 None:intergenic 45.0%
TCGTCAGAAAACTTGGCAAG+AGG - chr4_3:55960130-55960149 Msa0649340:CDS 45.0%
! TCGGTTTTTGCACTGAACGT+CGG + chr4_3:55960210-55960229 None:intergenic 45.0%
ACTCGTCTTGACGTTCTCAT+CGG - chr4_3:55960317-55960336 Msa0649340:CDS 45.0%
! TCTCATCGGCGATACTTTTC+CGG - chr4_3:55960331-55960350 Msa0649340:CDS 45.0%
TGGATAATCTCTCATCCGGT+CGG - chr4_3:55960470-55960489 Msa0649340:CDS 45.0%
! ACGTTTTTGTGTTCCGGATC+GGG + chr4_3:55960498-55960517 None:intergenic 45.0%
! GACGTTTTTGTGTTCCGGAT+CGG + chr4_3:55960499-55960518 None:intergenic 45.0%
ATCCGGAACACAAAAACGTC+CGG - chr4_3:55960499-55960518 Msa0649340:CDS 45.0%
AACACAAAAACGTCCGGCAA+TGG - chr4_3:55960505-55960524 Msa0649340:CDS 45.0%
!! AAAGAGACGAAGCATCGTTC+CGG - chr4_3:55960531-55960550 Msa0649340:CDS 45.0%
AAAGTGTGGAGTCAGAGGAA+TGG - chr4_3:55960603-55960622 Msa0649340:CDS 45.0%
AGAAAACGATGGGACCCATA+AGG - chr4_3:55960643-55960662 Msa0649340:CDS 45.0%
GCAGTTATACATGGAAACGC+AGG - chr4_3:55960808-55960827 Msa0649340:CDS 45.0%
AAACGCACTAAACGTGCTTC+TGG - chr4_3:55960848-55960867 Msa0649340:CDS 45.0%
!! ACTAAACGTGCTTCTGGTTC+CGG - chr4_3:55960854-55960873 Msa0649340:CDS 45.0%
!! ACGAGAGTCGTTTTACCGTG+CGG + chr4_3:55959859-55959878 None:intergenic 50.0%
!!! TTGAGTTTTTGGTCGGCGGA+CGG + chr4_3:55959909-55959928 None:intergenic 50.0%
!!! ACGGTTGAGTTTTTGGTCGG+CGG + chr4_3:55959913-55959932 None:intergenic 50.0%
!!! CGGACGGTTGAGTTTTTGGT+CGG + chr4_3:55959916-55959935 None:intergenic 50.0%
! TCGACGGACGGTTGAGTTTT+TGG + chr4_3:55959920-55959939 None:intergenic 50.0%
GCGATGATGTCCATGAAACG+CGG + chr4_3:55959960-55959979 None:intergenic 50.0%
CGTTTCATGGACATCATCGC+CGG - chr4_3:55959960-55959979 Msa0649340:intron 50.0%
!! GGAACGGAGTTGATAGGTGA+CGG + chr4_3:55959990-55960009 None:intergenic 50.0%
ACGTCGCGCTTTCTTGTTAC+CGG + chr4_3:55960186-55960205 None:intergenic 50.0%
AGACGAGTGAAAAACGGCCA+GGG + chr4_3:55960305-55960324 None:intergenic 50.0%
AAGACGAGTGAAAAACGGCC+AGG + chr4_3:55960306-55960325 None:intergenic 50.0%
GGAGTAGACCGTACATTCAC+CGG + chr4_3:55960374-55960393 None:intergenic 50.0%
GGATGAGAGATTATCCACGC+CGG + chr4_3:55960467-55960486 None:intergenic 50.0%
GGCGTGGATAATCTCTCATC+CGG - chr4_3:55960466-55960485 Msa0649340:CDS 50.0%
! CGTTTTTGTGTTCCGGATCG+GGG + chr4_3:55960497-55960516 None:intergenic 50.0%
! TGCCGGACGTTTTTGTGTTC+CGG + chr4_3:55960504-55960523 None:intergenic 50.0%
! TCGTCTCTTTTCGCCATTGC+CGG + chr4_3:55960521-55960540 None:intergenic 50.0%
ATCGTTCCGGCGGAATTTCT+CGG - chr4_3:55960544-55960563 Msa0649340:CDS 50.0%
TGTGGAGTCAGAGGAATGGA+GGG - chr4_3:55960607-55960626 Msa0649340:CDS 50.0%
GATGGGACCCATAAGGAGTT+TGG - chr4_3:55960650-55960669 Msa0649340:CDS 50.0%
TGGTGGAATTGGAGAAGCAG+AGG - chr4_3:55960750-55960769 Msa0649340:CDS 50.0%
GCAGAGGATGCAGTTTGTGA+AGG - chr4_3:55960766-55960785 Msa0649340:CDS 50.0%
TGGTTGCTTGCAGCAGAAGT+TGG - chr4_3:55961005-55961024 Msa0649340:five_prime_UTR 50.0%
GGTTGCTTGCAGCAGAAGTT+GGG - chr4_3:55961006-55961025 Msa0649340:five_prime_UTR 50.0%
!! ACGAGAGTCGTTTTACCGTG+CGG + chr4_3:55959859-55959878 None:intergenic 50.0%
!!! TTGAGTTTTTGGTCGGCGGA+CGG + chr4_3:55959909-55959928 None:intergenic 50.0%
!!! ACGGTTGAGTTTTTGGTCGG+CGG + chr4_3:55959913-55959932 None:intergenic 50.0%
!!! CGGACGGTTGAGTTTTTGGT+CGG + chr4_3:55959916-55959935 None:intergenic 50.0%
! TCGACGGACGGTTGAGTTTT+TGG + chr4_3:55959920-55959939 None:intergenic 50.0%
GCGATGATGTCCATGAAACG+CGG + chr4_3:55959960-55959979 None:intergenic 50.0%
CGTTTCATGGACATCATCGC+CGG - chr4_3:55959960-55959979 Msa0649340:intron 50.0%
!! GGAACGGAGTTGATAGGTGA+CGG + chr4_3:55959990-55960009 None:intergenic 50.0%
ACGTCGCGCTTTCTTGTTAC+CGG + chr4_3:55960186-55960205 None:intergenic 50.0%
AGACGAGTGAAAAACGGCCA+GGG + chr4_3:55960305-55960324 None:intergenic 50.0%
AAGACGAGTGAAAAACGGCC+AGG + chr4_3:55960306-55960325 None:intergenic 50.0%
GGAGTAGACCGTACATTCAC+CGG + chr4_3:55960374-55960393 None:intergenic 50.0%
GGATGAGAGATTATCCACGC+CGG + chr4_3:55960467-55960486 None:intergenic 50.0%
GGCGTGGATAATCTCTCATC+CGG - chr4_3:55960466-55960485 Msa0649340:CDS 50.0%
! CGTTTTTGTGTTCCGGATCG+GGG + chr4_3:55960497-55960516 None:intergenic 50.0%
! TGCCGGACGTTTTTGTGTTC+CGG + chr4_3:55960504-55960523 None:intergenic 50.0%
! TCGTCTCTTTTCGCCATTGC+CGG + chr4_3:55960521-55960540 None:intergenic 50.0%
ATCGTTCCGGCGGAATTTCT+CGG - chr4_3:55960544-55960563 Msa0649340:CDS 50.0%
TGTGGAGTCAGAGGAATGGA+GGG - chr4_3:55960607-55960626 Msa0649340:CDS 50.0%
GATGGGACCCATAAGGAGTT+TGG - chr4_3:55960650-55960669 Msa0649340:CDS 50.0%
TGGTGGAATTGGAGAAGCAG+AGG - chr4_3:55960750-55960769 Msa0649340:CDS 50.0%
GCAGAGGATGCAGTTTGTGA+AGG - chr4_3:55960766-55960785 Msa0649340:CDS 50.0%
TGGTTGCTTGCAGCAGAAGT+TGG - chr4_3:55961005-55961024 Msa0649340:five_prime_UTR 50.0%
GGTTGCTTGCAGCAGAAGTT+GGG - chr4_3:55961006-55961025 Msa0649340:five_prime_UTR 50.0%
! CAATGTGTTTTCCCCCCGCA+CGG - chr4_3:55959841-55959860 Msa0649340:CDS 55.0%
!! AGAGTCGTTTTACCGTGCGG+GGG + chr4_3:55959856-55959875 None:intergenic 55.0%
!! GAGAGTCGTTTTACCGTGCG+GGG + chr4_3:55959857-55959876 None:intergenic 55.0%
!! CGAGAGTCGTTTTACCGTGC+GGG + chr4_3:55959858-55959877 None:intergenic 55.0%
!! GTTGATAGGTGACGGAGCTC+CGG + chr4_3:55959982-55960001 None:intergenic 55.0%
GAGGGTGGAAGTTGCGTCTT+CGG + chr4_3:55960063-55960082 None:intergenic 55.0%
GACGAAGGTTACCGCGGTTA+AGG + chr4_3:55960115-55960134 None:intergenic 55.0%
TCGCGCTTTCTTGTTACCGG+CGG + chr4_3:55960183-55960202 None:intergenic 55.0%
GCTAGGGTTTCCGAATCCGA+CGG - chr4_3:55960266-55960285 Msa0649340:CDS 55.0%
TGAAAAACGGCCAGGGACTC+TGG + chr4_3:55960298-55960317 None:intergenic 55.0%
!!! GGCGGGGAGAGTTTTTTGAC+CGG + chr4_3:55960353-55960372 None:intergenic 55.0%
GGTCAAAAAACTCTCCCCGC+CGG - chr4_3:55960352-55960371 Msa0649340:CDS 55.0%
TAGACCGTACATTCACCGGC+GGG + chr4_3:55960370-55960389 None:intergenic 55.0%
GTAGACCGTACATTCACCGG+CGG + chr4_3:55960371-55960390 None:intergenic 55.0%
AGGAGGTGGACGTTTGACGA+CGG + chr4_3:55960399-55960418 None:intergenic 55.0%
TGAGAGATTATCCACGCCGG+AGG + chr4_3:55960464-55960483 None:intergenic 55.0%
! GGCAGAAAGTGTGGAGTCAG+AGG - chr4_3:55960598-55960617 Msa0649340:CDS 55.0%
GTGTGGAGTCAGAGGAATGG+AGG - chr4_3:55960606-55960625 Msa0649340:CDS 55.0%
GTGGAGTCAGAGGAATGGAG+GGG - chr4_3:55960608-55960627 Msa0649340:CDS 55.0%
TGGAGTCAGAGGAATGGAGG+GGG - chr4_3:55960609-55960628 Msa0649340:CDS 55.0%
GAGGAATGGAGGGGGAAGAA+AGG - chr4_3:55960617-55960636 Msa0649340:CDS 55.0%
TGGTTTCAGAGAGCTCGCTC+AGG - chr4_3:55960670-55960689 Msa0649340:CDS 55.0%
! CAATGTGTTTTCCCCCCGCA+CGG - chr4_3:55959841-55959860 Msa0649340:CDS 55.0%
!! AGAGTCGTTTTACCGTGCGG+GGG + chr4_3:55959856-55959875 None:intergenic 55.0%
!! GAGAGTCGTTTTACCGTGCG+GGG + chr4_3:55959857-55959876 None:intergenic 55.0%
!! CGAGAGTCGTTTTACCGTGC+GGG + chr4_3:55959858-55959877 None:intergenic 55.0%
!! GTTGATAGGTGACGGAGCTC+CGG + chr4_3:55959982-55960001 None:intergenic 55.0%
GAGGGTGGAAGTTGCGTCTT+CGG + chr4_3:55960063-55960082 None:intergenic 55.0%
GACGAAGGTTACCGCGGTTA+AGG + chr4_3:55960115-55960134 None:intergenic 55.0%
TCGCGCTTTCTTGTTACCGG+CGG + chr4_3:55960183-55960202 None:intergenic 55.0%
GCTAGGGTTTCCGAATCCGA+CGG - chr4_3:55960266-55960285 Msa0649340:CDS 55.0%
TGAAAAACGGCCAGGGACTC+TGG + chr4_3:55960298-55960317 None:intergenic 55.0%
!!! GGCGGGGAGAGTTTTTTGAC+CGG + chr4_3:55960353-55960372 None:intergenic 55.0%
GGTCAAAAAACTCTCCCCGC+CGG - chr4_3:55960352-55960371 Msa0649340:CDS 55.0%
TAGACCGTACATTCACCGGC+GGG + chr4_3:55960370-55960389 None:intergenic 55.0%
GTAGACCGTACATTCACCGG+CGG + chr4_3:55960371-55960390 None:intergenic 55.0%
AGGAGGTGGACGTTTGACGA+CGG + chr4_3:55960399-55960418 None:intergenic 55.0%
TGAGAGATTATCCACGCCGG+AGG + chr4_3:55960464-55960483 None:intergenic 55.0%
! GGCAGAAAGTGTGGAGTCAG+AGG - chr4_3:55960598-55960617 Msa0649340:CDS 55.0%
GTGTGGAGTCAGAGGAATGG+AGG - chr4_3:55960606-55960625 Msa0649340:CDS 55.0%
GTGGAGTCAGAGGAATGGAG+GGG - chr4_3:55960608-55960627 Msa0649340:CDS 55.0%
TGGAGTCAGAGGAATGGAGG+GGG - chr4_3:55960609-55960628 Msa0649340:CDS 55.0%
GAGGAATGGAGGGGGAAGAA+AGG - chr4_3:55960617-55960636 Msa0649340:CDS 55.0%
TGGTTTCAGAGAGCTCGCTC+AGG - chr4_3:55960670-55960689 Msa0649340:CDS 55.0%
!! GAGTCGTTTTACCGTGCGGG+GGG + chr4_3:55959855-55959874 None:intergenic 60.0%
!!! AGTTTTTGGTCGGCGGACGG+AGG + chr4_3:55959906-55959925 None:intergenic 60.0%
CTTCGGTCCAGCAGTCTTCG+CGG + chr4_3:55960046-55960065 None:intergenic 60.0%
TTCCACCCTCATCGACGCCT+GGG - chr4_3:55960073-55960092 Msa0649340:CDS 60.0%
!! TTCACCCCAGGCGTCGATGA+GGG + chr4_3:55960081-55960100 None:intergenic 60.0%
CGCTACCTCGACCTTAACCG+CGG - chr4_3:55960101-55960120 Msa0649340:CDS 60.0%
GGTTACCGCGGTTAAGGTCG+AGG + chr4_3:55960109-55960128 None:intergenic 60.0%
CTTTCTTGTTACCGGCGGCG+TGG + chr4_3:55960178-55960197 None:intergenic 60.0%
AGGGTTTCCGAATCCGACGG+CGG - chr4_3:55960269-55960288 Msa0649340:CDS 60.0%
CTGGTAACCGCCGTCGGATT+CGG + chr4_3:55960279-55960298 None:intergenic 60.0%
TCTCCCCGCCGGTGAATGTA+CGG - chr4_3:55960363-55960382 Msa0649340:CDS 60.0%
AGACCGTACATTCACCGGCG+GGG + chr4_3:55960369-55960388 None:intergenic 60.0%
GGTGGACGTTTGACGACGGT+TGG + chr4_3:55960395-55960414 None:intergenic 60.0%
GACGGTGGAGATTGAGGAGG+TGG + chr4_3:55960413-55960432 None:intergenic 60.0%
GGAGACGGTGGAGATTGAGG+AGG + chr4_3:55960416-55960435 None:intergenic 60.0%
GGTGGAGACGGTGGAGATTG+AGG + chr4_3:55960419-55960438 None:intergenic 60.0%
GACGGTGGAGAAGGTGGAGA+CGG + chr4_3:55960431-55960450 None:intergenic 60.0%
ATTATCCACGCCGGAGGCGA+CGG + chr4_3:55960458-55960477 None:intergenic 60.0%
!! GAGACGAAGCATCGTTCCGG+CGG - chr4_3:55960534-55960553 Msa0649340:CDS 60.0%
CGAACGCCGAGAAATTCCGC+CGG + chr4_3:55960553-55960572 None:intergenic 60.0%
GCGGAATTTCTCGGCGTTCG+CGG - chr4_3:55960553-55960572 Msa0649340:CDS 60.0%
GAATTTCTCGGCGTTCGCGG+CGG - chr4_3:55960556-55960575 Msa0649340:CDS 60.0%
!! GAGTCGTTTTACCGTGCGGG+GGG + chr4_3:55959855-55959874 None:intergenic 60.0%
!!! AGTTTTTGGTCGGCGGACGG+AGG + chr4_3:55959906-55959925 None:intergenic 60.0%
CTTCGGTCCAGCAGTCTTCG+CGG + chr4_3:55960046-55960065 None:intergenic 60.0%
TTCCACCCTCATCGACGCCT+GGG - chr4_3:55960073-55960092 Msa0649340:CDS 60.0%
!! TTCACCCCAGGCGTCGATGA+GGG + chr4_3:55960081-55960100 None:intergenic 60.0%
CGCTACCTCGACCTTAACCG+CGG - chr4_3:55960101-55960120 Msa0649340:CDS 60.0%
GGTTACCGCGGTTAAGGTCG+AGG + chr4_3:55960109-55960128 None:intergenic 60.0%
CTTTCTTGTTACCGGCGGCG+TGG + chr4_3:55960178-55960197 None:intergenic 60.0%
AGGGTTTCCGAATCCGACGG+CGG - chr4_3:55960269-55960288 Msa0649340:CDS 60.0%
CTGGTAACCGCCGTCGGATT+CGG + chr4_3:55960279-55960298 None:intergenic 60.0%
TCTCCCCGCCGGTGAATGTA+CGG - chr4_3:55960363-55960382 Msa0649340:CDS 60.0%
AGACCGTACATTCACCGGCG+GGG + chr4_3:55960369-55960388 None:intergenic 60.0%
GGTGGACGTTTGACGACGGT+TGG + chr4_3:55960395-55960414 None:intergenic 60.0%
GACGGTGGAGATTGAGGAGG+TGG + chr4_3:55960413-55960432 None:intergenic 60.0%
GGAGACGGTGGAGATTGAGG+AGG + chr4_3:55960416-55960435 None:intergenic 60.0%
GGTGGAGACGGTGGAGATTG+AGG + chr4_3:55960419-55960438 None:intergenic 60.0%
GACGGTGGAGAAGGTGGAGA+CGG + chr4_3:55960431-55960450 None:intergenic 60.0%
ATTATCCACGCCGGAGGCGA+CGG + chr4_3:55960458-55960477 None:intergenic 60.0%
!! GAGACGAAGCATCGTTCCGG+CGG - chr4_3:55960534-55960553 Msa0649340:CDS 60.0%
CGAACGCCGAGAAATTCCGC+CGG + chr4_3:55960553-55960572 None:intergenic 60.0%
GCGGAATTTCTCGGCGTTCG+CGG - chr4_3:55960553-55960572 Msa0649340:CDS 60.0%
GAATTTCTCGGCGTTCGCGG+CGG - chr4_3:55960556-55960575 Msa0649340:CDS 60.0%
GGCGGACGGAGGCTAACTGA+TGG + chr4_3:55959895-55959914 None:intergenic 65.0%
! CGCGGCGGAACGGAGTTGAT+AGG + chr4_3:55959996-55960015 None:intergenic 65.0%
GATGACGACGGAAGACGCGG+CGG + chr4_3:55960011-55960030 None:intergenic 65.0%
GGCGATGACGACGGAAGACG+CGG + chr4_3:55960014-55960033 None:intergenic 65.0%
ACGGGGAACGGCGATGACGA+CGG + chr4_3:55960023-55960042 None:intergenic 65.0%
CAGTCTTCGCGGACGGGGAA+CGG + chr4_3:55960035-55960054 None:intergenic 65.0%
TCCAGCAGTCTTCGCGGACG+GGG + chr4_3:55960040-55960059 None:intergenic 65.0%
GTCCAGCAGTCTTCGCGGAC+GGG + chr4_3:55960041-55960060 None:intergenic 65.0%
GGTCCAGCAGTCTTCGCGGA+CGG + chr4_3:55960042-55960061 None:intergenic 65.0%
CTTCCACCCTCATCGACGCC+TGG - chr4_3:55960072-55960091 Msa0649340:CDS 65.0%
TCCACCCTCATCGACGCCTG+GGG - chr4_3:55960074-55960093 Msa0649340:CDS 65.0%
!! GTTCACCCCAGGCGTCGATG+AGG + chr4_3:55960082-55960101 None:intergenic 65.0%
GTCGAGGTAGCGTTCACCCC+AGG + chr4_3:55960093-55960112 None:intergenic 65.0%
GTGGACGTCGTTGACGGCGT+CGG + chr4_3:55960159-55960178 None:intergenic 65.0%
GGGACTCTGGTAACCGCCGT+CGG + chr4_3:55960285-55960304 None:intergenic 65.0%
ACGGCGGTTACCAGAGTCCC+TGG - chr4_3:55960285-55960304 Msa0649340:CDS 65.0%
GGTGGAGAAGGTGGAGACGG+TGG + chr4_3:55960428-55960447 None:intergenic 65.0%
GGTGGAGACGGTGGAGAAGG+TGG + chr4_3:55960437-55960456 None:intergenic 65.0%
GACGGTGGAGACGGTGGAGA+AGG + chr4_3:55960440-55960459 None:intergenic 65.0%
GGCGGCTGAGGCAGAAAGTG+TGG - chr4_3:55960589-55960608 Msa0649340:CDS 65.0%
GGCGGACGGAGGCTAACTGA+TGG + chr4_3:55959895-55959914 None:intergenic 65.0%
! CGCGGCGGAACGGAGTTGAT+AGG + chr4_3:55959996-55960015 None:intergenic 65.0%
GATGACGACGGAAGACGCGG+CGG + chr4_3:55960011-55960030 None:intergenic 65.0%
GGCGATGACGACGGAAGACG+CGG + chr4_3:55960014-55960033 None:intergenic 65.0%
ACGGGGAACGGCGATGACGA+CGG + chr4_3:55960023-55960042 None:intergenic 65.0%
CAGTCTTCGCGGACGGGGAA+CGG + chr4_3:55960035-55960054 None:intergenic 65.0%
TCCAGCAGTCTTCGCGGACG+GGG + chr4_3:55960040-55960059 None:intergenic 65.0%
GTCCAGCAGTCTTCGCGGAC+GGG + chr4_3:55960041-55960060 None:intergenic 65.0%
GGTCCAGCAGTCTTCGCGGA+CGG + chr4_3:55960042-55960061 None:intergenic 65.0%
CTTCCACCCTCATCGACGCC+TGG - chr4_3:55960072-55960091 Msa0649340:CDS 65.0%
TCCACCCTCATCGACGCCTG+GGG - chr4_3:55960074-55960093 Msa0649340:CDS 65.0%
!! GTTCACCCCAGGCGTCGATG+AGG + chr4_3:55960082-55960101 None:intergenic 65.0%
GTCGAGGTAGCGTTCACCCC+AGG + chr4_3:55960093-55960112 None:intergenic 65.0%
GTGGACGTCGTTGACGGCGT+CGG + chr4_3:55960159-55960178 None:intergenic 65.0%
GGGACTCTGGTAACCGCCGT+CGG + chr4_3:55960285-55960304 None:intergenic 65.0%
ACGGCGGTTACCAGAGTCCC+TGG - chr4_3:55960285-55960304 Msa0649340:CDS 65.0%
GGTGGAGAAGGTGGAGACGG+TGG + chr4_3:55960428-55960447 None:intergenic 65.0%
GGTGGAGACGGTGGAGAAGG+TGG + chr4_3:55960437-55960456 None:intergenic 65.0%
GACGGTGGAGACGGTGGAGA+AGG + chr4_3:55960440-55960459 None:intergenic 65.0%
GGCGGCTGAGGCAGAAAGTG+TGG - chr4_3:55960589-55960608 Msa0649340:CDS 65.0%
CGACGGAAGACGCGGCGGAA+CGG + chr4_3:55960006-55960025 None:intergenic 70.0%
TCCCCGTCCGCGAAGACTGC+TGG - chr4_3:55960036-55960055 Msa0649340:CDS 70.0%
!! ACCCCAGGCGTCGATGAGGG+TGG + chr4_3:55960078-55960097 None:intergenic 70.0%
GGCGGCGTGGACGTCGTTGA+CGG + chr4_3:55960165-55960184 None:intergenic 70.0%
GTCAACGACGTCCACGCCGC+CGG - chr4_3:55960164-55960183 Msa0649340:CDS 70.0%
ACCGTCTCCACCGTCGCCTC+CGG - chr4_3:55960445-55960464 Msa0649340:CDS 70.0%
CATCCGGTCGGTCCCCGATC+CGG - chr4_3:55960482-55960501 Msa0649340:CDS 70.0%
GTTCCGGATCGGGGACCGAC+CGG + chr4_3:55960488-55960507 None:intergenic 70.0%
CGACGGAAGACGCGGCGGAA+CGG + chr4_3:55960006-55960025 None:intergenic 70.0%
TCCCCGTCCGCGAAGACTGC+TGG - chr4_3:55960036-55960055 Msa0649340:CDS 70.0%
!! ACCCCAGGCGTCGATGAGGG+TGG + chr4_3:55960078-55960097 None:intergenic 70.0%
GGCGGCGTGGACGTCGTTGA+CGG + chr4_3:55960165-55960184 None:intergenic 70.0%
GTCAACGACGTCCACGCCGC+CGG - chr4_3:55960164-55960183 Msa0649340:CDS 70.0%
ACCGTCTCCACCGTCGCCTC+CGG - chr4_3:55960445-55960464 Msa0649340:CDS 70.0%
CATCCGGTCGGTCCCCGATC+CGG - chr4_3:55960482-55960501 Msa0649340:CDS 70.0%
GTTCCGGATCGGGGACCGAC+CGG + chr4_3:55960488-55960507 None:intergenic 70.0%
GGAGGCGACGGTGGAGACGG+TGG + chr4_3:55960446-55960465 None:intergenic 75.0%
GCCGGAGGCGACGGTGGAGA+CGG + chr4_3:55960449-55960468 None:intergenic 75.0%
ATCCACGCCGGAGGCGACGG+TGG + chr4_3:55960455-55960474 None:intergenic 75.0%
GGAGGCGACGGTGGAGACGG+TGG + chr4_3:55960446-55960465 None:intergenic 75.0%
GCCGGAGGCGACGGTGGAGA+CGG + chr4_3:55960449-55960468 None:intergenic 75.0%
ATCCACGCCGGAGGCGACGG+TGG + chr4_3:55960455-55960474 None:intergenic 75.0%
! CTCCACCGTCGCCTCCGGCG+TGG - chr4_3:55960450-55960469 Msa0649340:CDS 80.0%
! GGCGTTCGCGGCGGCTGCTG+CGG - chr4_3:55960565-55960584 Msa0649340:CDS 80.0%
! GTTCGCGGCGGCTGCTGCGG+CGG - chr4_3:55960568-55960587 Msa0649340:CDS 80.0%
! CTCCACCGTCGCCTCCGGCG+TGG - chr4_3:55960450-55960469 Msa0649340:CDS 80.0%
! GGCGTTCGCGGCGGCTGCTG+CGG - chr4_3:55960565-55960584 Msa0649340:CDS 80.0%
! GTTCGCGGCGGCTGCTGCGG+CGG - chr4_3:55960568-55960587 Msa0649340:CDS 80.0%
! GGCTGCTGCGGCGGCGGCTG+AGG - chr4_3:55960577-55960596 Msa0649340:CDS 85.0%
! GGCTGCTGCGGCGGCGGCTG+AGG - chr4_3:55960577-55960596 Msa0649340:CDS 85.0%
! CGCGGCGGCTGCTGCGGCGG+CGG - chr4_3:55960571-55960590 Msa0649340:CDS 90.0%
! CGCGGCGGCTGCTGCGGCGG+CGG - chr4_3:55960571-55960590 Msa0649340:CDS 90.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55959837 55961058 55959837 ID=Msa0649340;Name=Msa0649340
chr4_3 mRNA 55959837 55961058 55959837 ID=Msa0649340-mRNA-1;Parent=Msa0649340;Name=Msa0649340-mRNA-1;_AED=0.13;_eAED=0.13;_QI=129|0|0.5|0.5|1|1|2|0|316
chr4_3 exon 55959837 55959877 55959837 ID=Msa0649340-mRNA-1:exon:14446;Parent=Msa0649340-mRNA-1
chr4_3 exon 55960020 55961058 55960020 ID=Msa0649340-mRNA-1:exon:14445;Parent=Msa0649340-mRNA-1
chr4_3 five_prime_UTR 55960930 55961058 55960930 ID=Msa0649340-mRNA-1:five_prime_utr;Parent=Msa0649340-mRNA-1
chr4_3 CDS 55960020 55960929 55960020 ID=Msa0649340-mRNA-1:cds;Parent=Msa0649340-mRNA-1
chr4_3 CDS 55959837 55959877 55959837 ID=Msa0649340-mRNA-1:cds;Parent=Msa0649340-mRNA-1
Gene Sequence

>Msa0649340

ATGGACATCATCGCCGGAGCTCCGTCACCTATCAACTCCGTTCCGCCGCGTCTTCCGTCGTCATCGCCGTTCCCCGTCCGCGAAGACTGCTGGACCGAAGACGCAACTTCCACCCTCATCGACGCCTGGGGTGAACGCTACCTCGACCTTAACCGCGGTAACCTTCGTCAGAAAACTTGGCAAGAGGTTGCCGACGCCGTCAACGACGTCCACGCCGCCGGTAACAAGAAAGCGCGACGTACCGACGTTCAGTGCAAAAACCGAATCGACACGTTAAAGAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCCGAATCCGACGGCGGTTACCAGAGTCCCTGGCCGTTTTTCACTCGTCTTGACGTTCTCATCGGCGATACTTTTCCGGTCAAAAAACTCTCCCCGCCGGTGAATGTACGGTCTACTCCAACCGTCGTCAAACGTCCACCTCCTCAATCTCCACCGTCTCCACCTTCTCCACCGTCTCCACCGTCGCCTCCGGCGTGGATAATCTCTCATCCGGTCGGTCCCCGATCCGGAACACAAAAACGTCCGGCAATGGCGAAAAGAGACGAAGCATCGTTCCGGCGGAATTTCTCGGCGTTCGCGGCGGCTGCTGCGGCGGCGGCTGAGGCAGAAAGTGTGGAGTCAGAGGAATGGAGGGGGAAGAAAGGAAGAGAAAACGATGGGACCCATAAGGAGTTTGGTTTCAGAGAGCTCGCTCAGGCTATAGAGAGATTCAGTGAAGTATATGAAAGAGTTGAAGCTTCAAAACAGAGACAAATGGTGGAATTGGAGAAGCAGAGGATGCAGTTTGTGAAGGATTTGGAGTATCAGAGAATGCAGTTATACATGGAAACGCAGGTTCAGCTTCAGAAAATCAAACGCACTAAACGTGCTTCTGGTTCCGCAGAAGTTGGGTATTTTGTTACTTGTGATAATGGTAACTGA
Protein sequence

>Msa0649340

MDIIAGAPSPINSVPPRLPSSSPFPVREDCWTEDATSTLIDAWGERYLDLNRGNLRQKTWQEVADAVNDVHAAGNKKARRTDVQCKNRIDTLKKKYKIEKARVSESDGGYQSPWPFFTRLDVLIGDTFPVKKLSPPVNVRSTPTVVKRPPPQSPPSPPSPPSPPSPPAWIISHPVGPRSGTQKRPAMAKRDEASFRRNFSAFAAAAAAAAEAESVESEEWRGKKGRENDGTHKEFGFRELAQAIERFSEVYERVEASKQRQMVELEKQRMQFVKDLEYQRMQLYMETQVQLQKIKRTKRASGSAEVGYFVTCDNGN*