Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650480 | AES89938.1 | 90.110 | 273 | 27 | 0 | 1 | 273 | 1 | 273 | 1.14e-170 | 482 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650480 | sp|Q9FXA3|BH095_ARATH | 31.474 | 251 | 108 | 6 | 73 | 267 | 59 | 301 | 2.34e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650480 | G7JG89 | 90.110 | 273 | 27 | 0 | 1 | 273 | 1 | 273 | 5.42e-171 | 482 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0650480 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650480 | MtrunA17_Chr4g0042511 | 89.300 | 243 | 26 | 0 | 1 | 243 | 1 | 243 | 3.11e-151 | 423 |
| Msa0650480 | MtrunA17_Chr4g0044621 | 46.429 | 308 | 116 | 9 | 1 | 267 | 1 | 300 | 1.52e-61 | 196 |
| Msa0650480 | MtrunA17_Chr4g0044611 | 47.312 | 279 | 110 | 8 | 1 | 243 | 1 | 278 | 1.76e-59 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0650480 | AT1G49770.1 | 31.474 | 251 | 108 | 6 | 73 | 267 | 59 | 301 | 2.38e-25 | 102 |
Find 40 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCCATTTCTACATTT+TGG | 0.093907 | 4_3:+57495860 | None:intergenic |
| CCTCCACTGAAATTGCATTT+TGG | 0.191221 | 4_3:+57493613 | None:intergenic |
| TGACTTTAGATGATGATAAA+TGG | 0.249362 | 4_3:-57495981 | Msa0650480:CDS |
| AGCTAGCAGCAGGAGAAATT+AGG | 0.262683 | 4_3:-57493581 | Msa0650480:CDS |
| TTCATCTCCGCAAATGTTAA+AGG | 0.277405 | 4_3:+57494711 | None:intergenic |
| AATGGTTCTTTGTTCTCATT+TGG | 0.286563 | 4_3:+57495901 | None:intergenic |
| GCTAGCAGCAGGAGAAATTA+GGG | 0.304341 | 4_3:-57493580 | Msa0650480:CDS |
| CTCATTGATTCAATGTCTAA+TGG | 0.319505 | 4_3:+57495883 | None:intergenic |
| AACATCTTGTGCAATGATAA+TGG | 0.343823 | 4_3:-57494595 | Msa0650480:CDS |
| CACATTGCTTCTTATTCACT+AGG | 0.390758 | 4_3:+57495833 | None:intergenic |
| ATTTGAAACTTACATGGGCT+TGG | 0.392532 | 4_3:+57494557 | None:intergenic |
| AATGAGCCAAAATGTAGAAA+TGG | 0.410797 | 4_3:-57495866 | Msa0650480:CDS |
| AATGTTACCTTTAACATTTG+CGG | 0.450475 | 4_3:-57494718 | Msa0650480:CDS |
| GATTCCTCATCTTACTTACA+AGG | 0.453723 | 4_3:-57495656 | Msa0650480:intron |
| AAAACAAACTCTTGAAAAGC+TGG | 0.453918 | 4_3:-57494869 | Msa0650480:CDS |
| GATGAGGAATCAAATCTTGA+AGG | 0.457081 | 4_3:+57495668 | None:intergenic |
| ATTTGGTTTATCAGAAATGA+AGG | 0.457704 | 4_3:+57495918 | None:intergenic |
| AAAATTGTTGTCAACAAGCC+TGG | 0.495164 | 4_3:+57494658 | None:intergenic |
| ATGTGTGAAAATCAATCATC+GGG | 0.496092 | 4_3:-57495943 | Msa0650480:CDS |
| TAAGAAGCAATGTGAGGGAG+GGG | 0.496799 | 4_3:-57495824 | Msa0650480:CDS |
| ATTATCATTGCACAAGATGT+TGG | 0.497659 | 4_3:+57494597 | None:intergenic |
| ATGCACGTGCTGAGAGAGAA+AGG | 0.501549 | 4_3:-57495720 | Msa0650480:CDS |
| GAAAGTTACAAGCTAGCAGC+AGG | 0.519236 | 4_3:-57493591 | Msa0650480:CDS |
| AATAAGAAGCAATGTGAGGG+AGG | 0.525488 | 4_3:-57495826 | Msa0650480:CDS |
| ACATTGCTTCTTATTCACTA+GGG | 0.529713 | 4_3:+57495834 | None:intergenic |
| TTTGGTTTATCAGAAATGAA+GGG | 0.532763 | 4_3:+57495919 | None:intergenic |
| CATGTGTGAAAATCAATCAT+CGG | 0.538236 | 4_3:-57495944 | Msa0650480:CDS |
| CTTCACTGCTTCCTCCACAA+TGG | 0.569321 | 4_3:+57494906 | None:intergenic |
| TTTATCATCATCTAAAGTCA+TGG | 0.573233 | 4_3:+57495984 | None:intergenic |
| ATAAGAAGCAATGTGAGGGA+GGG | 0.586200 | 4_3:-57495825 | Msa0650480:CDS |
| TTGGTTTATCAGAAATGAAG+GGG | 0.597449 | 4_3:+57495920 | None:intergenic |
| TTTACCTTGTAAGTAAGATG+AGG | 0.598129 | 4_3:+57495652 | None:intergenic |
| GTGAATAAGAAGCAATGTGA+GGG | 0.611245 | 4_3:-57495829 | Msa0650480:CDS |
| CCAAAATGCAATTTCAGTGG+AGG | 0.613831 | 4_3:-57493613 | Msa0650480:CDS |
| AAGCCAAAATGCAATTTCAG+TGG | 0.614102 | 4_3:-57493616 | Msa0650480:CDS |
| ATATACACAACTAAGAAGCC+AGG | 0.619168 | 4_3:-57494676 | Msa0650480:CDS |
| GGTAGATTCTGTAACCATTG+TGG | 0.628284 | 4_3:-57494920 | Msa0650480:CDS |
| CTAGCAGCAGGAGAAATTAG+GGG | 0.636230 | 4_3:-57493579 | Msa0650480:CDS |
| AGATTCTGTAACCATTGTGG+AGG | 0.646571 | 4_3:-57494917 | Msa0650480:CDS |
| AGTGAATAAGAAGCAATGTG+AGG | 0.680971 | 4_3:-57495830 | Msa0650480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAATGTTAAAAATGATA+AGG | - | chr4_3:57493769-57493788 | Msa0650480:intron | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | - | chr4_3:57493770-57493789 | Msa0650480:intron | 10.0% |
| !! | ACAAAAAAAAAAAAAAAAGT+TGG | + | chr4_3:57495698-57495717 | None:intergenic | 10.0% |
| !! | TTTAAATGTTAAAAATGATA+AGG | - | chr4_3:57493769-57493788 | Msa0650480:intron | 10.0% |
| !! | TTAAATGTTAAAAATGATAA+GGG | - | chr4_3:57493770-57493789 | Msa0650480:intron | 10.0% |
| !! | ACAAAAAAAAAAAAAAAAGT+TGG | + | chr4_3:57495698-57495717 | None:intergenic | 10.0% |
| !! | TAAATGTTAAAAATGATAAG+GGG | - | chr4_3:57493771-57493790 | Msa0650480:intron | 15.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | - | chr4_3:57493925-57493944 | Msa0650480:intron | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | + | chr4_3:57493970-57493989 | None:intergenic | 15.0% |
| !! | AAAATTGAAAGGATAAAATT+AGG | + | chr4_3:57494049-57494068 | None:intergenic | 15.0% |
| !! | CTTTAACTAAATTCAAATAT+GGG | - | chr4_3:57494327-57494346 | Msa0650480:intron | 15.0% |
| !!! | TAGTAATTTAAAATTTAGAC+TGG | + | chr4_3:57494393-57494412 | None:intergenic | 15.0% |
| !!! | GTCTAAATTTTAAATTACTA+AGG | - | chr4_3:57494393-57494412 | Msa0650480:intron | 15.0% |
| !! | TAATACAACAAAAAAAAGTT+TGG | - | chr4_3:57494442-57494461 | Msa0650480:intron | 15.0% |
| !! | AATACAACAAAAAAAAGTTT+GGG | - | chr4_3:57494443-57494462 | Msa0650480:intron | 15.0% |
| !!! | GAGTTTTTCATTTTTTTTTT+TGG | + | chr4_3:57495800-57495819 | None:intergenic | 15.0% |
| !! | TAAATGTTAAAAATGATAAG+GGG | - | chr4_3:57493771-57493790 | Msa0650480:intron | 15.0% |
| !!! | ATTACATTCATTTTTAAGAT+TGG | - | chr4_3:57493925-57493944 | Msa0650480:intron | 15.0% |
| !!! | ACAAAATTTTCATTGAAAAA+TGG | + | chr4_3:57493970-57493989 | None:intergenic | 15.0% |
| !! | AAAATTGAAAGGATAAAATT+AGG | + | chr4_3:57494049-57494068 | None:intergenic | 15.0% |
| !! | CTTTAACTAAATTCAAATAT+GGG | - | chr4_3:57494327-57494346 | Msa0650480:intron | 15.0% |
| !!! | TAGTAATTTAAAATTTAGAC+TGG | + | chr4_3:57494393-57494412 | None:intergenic | 15.0% |
| !!! | GTCTAAATTTTAAATTACTA+AGG | - | chr4_3:57494393-57494412 | Msa0650480:intron | 15.0% |
| !! | TAATACAACAAAAAAAAGTT+TGG | - | chr4_3:57494442-57494461 | Msa0650480:intron | 15.0% |
| !! | AATACAACAAAAAAAAGTTT+GGG | - | chr4_3:57494443-57494462 | Msa0650480:intron | 15.0% |
| !!! | GAGTTTTTCATTTTTTTTTT+TGG | + | chr4_3:57495800-57495819 | None:intergenic | 15.0% |
| !!! | ATTTTTTATTCTTTGTACCA+TGG | - | chr4_3:57494150-57494169 | Msa0650480:intron | 20.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | - | chr4_3:57494326-57494345 | Msa0650480:intron | 20.0% |
| !!! | TAATTTAAAATTTAGACTGG+AGG | + | chr4_3:57494390-57494409 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTATTAATTCGT+TGG | + | chr4_3:57494436-57494455 | None:intergenic | 20.0% |
| !!! | TGCTTTGTATTTAATTTCTT+TGG | - | chr4_3:57494606-57494625 | Msa0650480:CDS | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | + | chr4_3:57495002-57495021 | None:intergenic | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | + | chr4_3:57495003-57495022 | None:intergenic | 20.0% |
| !! | TCAATATATATGCTATGTTA+CGG | + | chr4_3:57495176-57495195 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | + | chr4_3:57495626-57495645 | None:intergenic | 20.0% |
| !!! | ATTTTTTATTCTTTGTACCA+TGG | - | chr4_3:57494150-57494169 | Msa0650480:intron | 20.0% |
| !! | GCTTTAACTAAATTCAAATA+TGG | - | chr4_3:57494326-57494345 | Msa0650480:intron | 20.0% |
| !!! | TAATTTAAAATTTAGACTGG+AGG | + | chr4_3:57494390-57494409 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTATTAATTCGT+TGG | + | chr4_3:57494436-57494455 | None:intergenic | 20.0% |
| !!! | TGCTTTGTATTTAATTTCTT+TGG | - | chr4_3:57494606-57494625 | Msa0650480:CDS | 20.0% |
| !!! | ATTGAATTTGAAACTTACAT+GGG | + | chr4_3:57495002-57495021 | None:intergenic | 20.0% |
| !!! | AATTGAATTTGAAACTTACA+TGG | + | chr4_3:57495003-57495022 | None:intergenic | 20.0% |
| !! | TCAATATATATGCTATGTTA+CGG | + | chr4_3:57495176-57495195 | None:intergenic | 20.0% |
| !!! | ATAAACTTTAGGTTTGTTTA+CGG | + | chr4_3:57495626-57495645 | None:intergenic | 20.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | + | chr4_3:57493570-57493589 | None:intergenic | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | - | chr4_3:57493570-57493589 | Msa0650480:CDS | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | + | chr4_3:57493635-57493654 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | + | chr4_3:57493636-57493655 | None:intergenic | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | + | chr4_3:57494295-57494314 | None:intergenic | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | - | chr4_3:57494294-57494313 | Msa0650480:intron | 25.0% |
| !!! | ATGAATAATCGGTTTGAAAT+AGG | + | chr4_3:57494507-57494526 | None:intergenic | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | + | chr4_3:57494578-57494597 | None:intergenic | 25.0% |
| !! | TTGTATTTAATTTCTTTGGC+AGG | - | chr4_3:57494610-57494629 | Msa0650480:CDS | 25.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | - | chr4_3:57494833-57494852 | Msa0650480:CDS | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | - | chr4_3:57495267-57495286 | Msa0650480:intron | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | - | chr4_3:57495456-57495475 | Msa0650480:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | - | chr4_3:57495483-57495502 | Msa0650480:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | + | chr4_3:57495625-57495644 | None:intergenic | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | + | chr4_3:57495663-57495682 | None:intergenic | 25.0% |
| !! | TCTTTATTTCATTATCCATG+TGG | - | chr4_3:57495855-57495874 | Msa0650480:CDS | 25.0% |
| !! | TTTATCATCATCTAAAGTCA+TGG | + | chr4_3:57493570-57493589 | None:intergenic | 25.0% |
| ! | TGACTTTAGATGATGATAAA+TGG | - | chr4_3:57493570-57493589 | Msa0650480:CDS | 25.0% |
| !! | TTTGGTTTATCAGAAATGAA+GGG | + | chr4_3:57493635-57493654 | None:intergenic | 25.0% |
| !! | ATTTGGTTTATCAGAAATGA+AGG | + | chr4_3:57493636-57493655 | None:intergenic | 25.0% |
| !! | ATCAAAATTGAATCGATTCA+TGG | + | chr4_3:57494295-57494314 | None:intergenic | 25.0% |
| !!! | ATGAATCGATTCAATTTTGA+TGG | - | chr4_3:57494294-57494313 | Msa0650480:intron | 25.0% |
| !!! | ATGAATAATCGGTTTGAAAT+AGG | + | chr4_3:57494507-57494526 | None:intergenic | 25.0% |
| ! | ATTAAATCAATGTTACACCT+AGG | + | chr4_3:57494578-57494597 | None:intergenic | 25.0% |
| !! | TTGTATTTAATTTCTTTGGC+AGG | - | chr4_3:57494610-57494629 | Msa0650480:CDS | 25.0% |
| ! | AATGTTACCTTTAACATTTG+CGG | - | chr4_3:57494833-57494852 | Msa0650480:CDS | 25.0% |
| !! | CATTTCTTTTGACAAAAAAG+AGG | - | chr4_3:57495267-57495286 | Msa0650480:intron | 25.0% |
| !! | CATGGATCTTTATTTAAGAA+AGG | - | chr4_3:57495456-57495475 | Msa0650480:intron | 25.0% |
| !!! | TGTCATGAAAAGTTTTATTG+CGG | - | chr4_3:57495483-57495502 | Msa0650480:intron | 25.0% |
| !! | TAAACTTTAGGTTTGTTTAC+GGG | + | chr4_3:57495625-57495644 | None:intergenic | 25.0% |
| !! | TTAGCAAAATACTTTTCTTC+TGG | + | chr4_3:57495663-57495682 | None:intergenic | 25.0% |
| !! | TCTTTATTTCATTATCCATG+TGG | - | chr4_3:57495855-57495874 | Msa0650480:CDS | 25.0% |
| CATGTGTGAAAATCAATCAT+CGG | - | chr4_3:57493607-57493626 | Msa0650480:CDS | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | - | chr4_3:57493608-57493627 | Msa0650480:CDS | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | + | chr4_3:57493634-57493653 | None:intergenic | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | + | chr4_3:57493653-57493672 | None:intergenic | 30.0% | |
| !! | CTCATTGATTCAATGTCTAA+TGG | + | chr4_3:57493671-57493690 | None:intergenic | 30.0% |
| AATGAGCCAAAATGTAGAAA+TGG | - | chr4_3:57493685-57493704 | Msa0650480:intron | 30.0% | |
| ! | CTTCTTCCATTTCTACATTT+TGG | + | chr4_3:57493694-57493713 | None:intergenic | 30.0% |
| ACATTGCTTCTTATTCACTA+GGG | + | chr4_3:57493720-57493739 | None:intergenic | 30.0% | |
| GAGAAAGGAGAAAAAAAATG+AGG | - | chr4_3:57493846-57493865 | Msa0650480:intron | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | + | chr4_3:57493902-57493921 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGGATGATATCAG+CGG | + | chr4_3:57494220-57494239 | None:intergenic | 30.0% |
| ! | AATGACGTGCAAATTTTTCT+TGG | + | chr4_3:57494233-57494252 | None:intergenic | 30.0% |
| ! | AAAATTGAATCGATTCATGG+AGG | + | chr4_3:57494292-57494311 | None:intergenic | 30.0% |
| ACTAAATTCAAATATGGGCT+TGG | - | chr4_3:57494332-57494351 | Msa0650480:intron | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | - | chr4_3:57494558-57494577 | Msa0650480:intron | 30.0% | |
| AAAACAAACTCTTGAAAAGC+TGG | - | chr4_3:57494682-57494701 | Msa0650480:CDS | 30.0% | |
| ATTATCATTGCACAAGATGT+TGG | + | chr4_3:57494957-57494976 | None:intergenic | 30.0% | |
| AACATCTTGTGCAATGATAA+TGG | - | chr4_3:57494956-57494975 | Msa0650480:intron | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | - | chr4_3:57495059-57495078 | Msa0650480:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | + | chr4_3:57495106-57495125 | None:intergenic | 30.0% | |
| CGGATTTAAACTGTGAATAA+TGG | + | chr4_3:57495156-57495175 | None:intergenic | 30.0% | |
| !! | AGAACTTTTGTGATTTGTGT+CGG | - | chr4_3:57495300-57495319 | Msa0650480:intron | 30.0% |
| TGTGCTCAAAATTAGTGTTT+AGG | - | chr4_3:57495331-57495350 | Msa0650480:intron | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | - | chr4_3:57495332-57495351 | Msa0650480:intron | 30.0% | |
| TAAGTCTAAATGAGTGACTT+AGG | - | chr4_3:57495357-57495376 | Msa0650480:intron | 30.0% | |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | - | chr4_3:57495370-57495389 | Msa0650480:intron | 30.0% |
| ACTTTGATGTCAATGATCAT+CGG | - | chr4_3:57495421-57495440 | Msa0650480:intron | 30.0% | |
| !! | AAGATAGACGCTTTTTGTTT+AGG | - | chr4_3:57495534-57495553 | Msa0650480:intron | 30.0% |
| GTAGTCAAAGGATAAACTTT+AGG | + | chr4_3:57495637-57495656 | None:intergenic | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | - | chr4_3:57495637-57495656 | Msa0650480:intron | 30.0% | |
| TTGAGTTATTTACATCCACA+TGG | + | chr4_3:57495873-57495892 | None:intergenic | 30.0% | |
| !! | TTGATTTGTGTTAATGTTGC+AGG | - | chr4_3:57495893-57495912 | Msa0650480:CDS | 30.0% |
| CATGTGTGAAAATCAATCAT+CGG | - | chr4_3:57493607-57493626 | Msa0650480:CDS | 30.0% | |
| ATGTGTGAAAATCAATCATC+GGG | - | chr4_3:57493608-57493627 | Msa0650480:CDS | 30.0% | |
| TTGGTTTATCAGAAATGAAG+GGG | + | chr4_3:57493634-57493653 | None:intergenic | 30.0% | |
| AATGGTTCTTTGTTCTCATT+TGG | + | chr4_3:57493653-57493672 | None:intergenic | 30.0% | |
| !! | CTCATTGATTCAATGTCTAA+TGG | + | chr4_3:57493671-57493690 | None:intergenic | 30.0% |
| AATGAGCCAAAATGTAGAAA+TGG | - | chr4_3:57493685-57493704 | Msa0650480:intron | 30.0% | |
| ! | CTTCTTCCATTTCTACATTT+TGG | + | chr4_3:57493694-57493713 | None:intergenic | 30.0% |
| ACATTGCTTCTTATTCACTA+GGG | + | chr4_3:57493720-57493739 | None:intergenic | 30.0% | |
| GAGAAAGGAGAAAAAAAATG+AGG | - | chr4_3:57493846-57493865 | Msa0650480:intron | 30.0% | |
| TTTACCTTGTAAGTAAGATG+AGG | + | chr4_3:57493902-57493921 | None:intergenic | 30.0% | |
| ! | TTTTTCTTGGATGATATCAG+CGG | + | chr4_3:57494220-57494239 | None:intergenic | 30.0% |
| ! | AATGACGTGCAAATTTTTCT+TGG | + | chr4_3:57494233-57494252 | None:intergenic | 30.0% |
| ! | AAAATTGAATCGATTCATGG+AGG | + | chr4_3:57494292-57494311 | None:intergenic | 30.0% |
| ACTAAATTCAAATATGGGCT+TGG | - | chr4_3:57494332-57494351 | Msa0650480:intron | 30.0% | |
| ATGTATATATAGCAACACCT+AGG | - | chr4_3:57494558-57494577 | Msa0650480:intron | 30.0% | |
| AAAACAAACTCTTGAAAAGC+TGG | - | chr4_3:57494682-57494701 | Msa0650480:CDS | 30.0% | |
| ATTATCATTGCACAAGATGT+TGG | + | chr4_3:57494957-57494976 | None:intergenic | 30.0% | |
| AACATCTTGTGCAATGATAA+TGG | - | chr4_3:57494956-57494975 | Msa0650480:intron | 30.0% | |
| CTAGTACTTGTAGAGTAATT+TGG | - | chr4_3:57495059-57495078 | Msa0650480:intron | 30.0% | |
| TCTTACATACTCTCTTCTAT+TGG | + | chr4_3:57495106-57495125 | None:intergenic | 30.0% | |
| CGGATTTAAACTGTGAATAA+TGG | + | chr4_3:57495156-57495175 | None:intergenic | 30.0% | |
| !! | AGAACTTTTGTGATTTGTGT+CGG | - | chr4_3:57495300-57495319 | Msa0650480:intron | 30.0% |
| TGTGCTCAAAATTAGTGTTT+AGG | - | chr4_3:57495331-57495350 | Msa0650480:intron | 30.0% | |
| GTGCTCAAAATTAGTGTTTA+GGG | - | chr4_3:57495332-57495351 | Msa0650480:intron | 30.0% | |
| TAAGTCTAAATGAGTGACTT+AGG | - | chr4_3:57495357-57495376 | Msa0650480:intron | 30.0% | |
| ! | GTGACTTAGGTTTTCTTTTT+TGG | - | chr4_3:57495370-57495389 | Msa0650480:intron | 30.0% |
| ACTTTGATGTCAATGATCAT+CGG | - | chr4_3:57495421-57495440 | Msa0650480:intron | 30.0% | |
| !! | AAGATAGACGCTTTTTGTTT+AGG | - | chr4_3:57495534-57495553 | Msa0650480:intron | 30.0% |
| GTAGTCAAAGGATAAACTTT+AGG | + | chr4_3:57495637-57495656 | None:intergenic | 30.0% | |
| AAAGTTTATCCTTTGACTAC+TGG | - | chr4_3:57495637-57495656 | Msa0650480:intron | 30.0% | |
| TTGAGTTATTTACATCCACA+TGG | + | chr4_3:57495873-57495892 | None:intergenic | 30.0% | |
| !! | TTGATTTGTGTTAATGTTGC+AGG | - | chr4_3:57495893-57495912 | Msa0650480:CDS | 30.0% |
| CACATTGCTTCTTATTCACT+AGG | + | chr4_3:57493721-57493740 | None:intergenic | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | - | chr4_3:57493721-57493740 | Msa0650480:intron | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | - | chr4_3:57493722-57493741 | Msa0650480:intron | 35.0% | |
| GATGAGGAATCAAATCTTGA+AGG | + | chr4_3:57493886-57493905 | None:intergenic | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | - | chr4_3:57493895-57493914 | Msa0650480:intron | 35.0% | |
| !! | CTTGGTGCACATTTTATGAA+AGG | + | chr4_3:57494007-57494026 | None:intergenic | 35.0% |
| TTTATTCTTTGTACCATGGC+AGG | - | chr4_3:57494154-57494173 | Msa0650480:intron | 35.0% | |
| CAACAAAAAAAAGTTTGGGC+AGG | - | chr4_3:57494447-57494466 | Msa0650480:intron | 35.0% | |
| !! | TAATCGGTTTGAAATAGGAG+CGG | + | chr4_3:57494502-57494521 | None:intergenic | 35.0% |
| !!! | TTTTAGTTTGAACTCGCAGA+TGG | - | chr4_3:57494766-57494785 | Msa0650480:CDS | 35.0% |
| TTCATCTCCGCAAATGTTAA+AGG | + | chr4_3:57494843-57494862 | None:intergenic | 35.0% | |
| ATATACACAACTAAGAAGCC+AGG | - | chr4_3:57494875-57494894 | Msa0650480:CDS | 35.0% | |
| AAAATTGTTGTCAACAAGCC+TGG | + | chr4_3:57494896-57494915 | None:intergenic | 35.0% | |
| ! | GACAACAATTTTTCATGCGA+TGG | - | chr4_3:57494904-57494923 | Msa0650480:CDS | 35.0% |
| ! | ATTTGAAACTTACATGGGCT+TGG | + | chr4_3:57494997-57495016 | None:intergenic | 35.0% |
| GTACTTGTAGAGTAATTTGG+AGG | - | chr4_3:57495062-57495081 | Msa0650480:intron | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | + | chr4_3:57495240-57495259 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | - | chr4_3:57495385-57495404 | Msa0650480:intron | 35.0% |
| CATCGGATTTATTTCAGTCA+TGG | - | chr4_3:57495438-57495457 | Msa0650480:intron | 35.0% | |
| TTCTTCCTTAGTCCTTTCTT+CGG | - | chr4_3:57495577-57495596 | Msa0650480:intron | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | + | chr4_3:57495592-57495611 | None:intergenic | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | - | chr4_3:57495592-57495611 | Msa0650480:intron | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | - | chr4_3:57495593-57495612 | Msa0650480:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | + | chr4_3:57495841-57495860 | None:intergenic | 35.0% | |
| AAGCCAAAATGCAATTTCAG+TGG | - | chr4_3:57495935-57495954 | Msa0650480:CDS | 35.0% | |
| CACATTGCTTCTTATTCACT+AGG | + | chr4_3:57493721-57493740 | None:intergenic | 35.0% | |
| AGTGAATAAGAAGCAATGTG+AGG | - | chr4_3:57493721-57493740 | Msa0650480:intron | 35.0% | |
| GTGAATAAGAAGCAATGTGA+GGG | - | chr4_3:57493722-57493741 | Msa0650480:intron | 35.0% | |
| GATGAGGAATCAAATCTTGA+AGG | + | chr4_3:57493886-57493905 | None:intergenic | 35.0% | |
| GATTCCTCATCTTACTTACA+AGG | - | chr4_3:57493895-57493914 | Msa0650480:intron | 35.0% | |
| !! | CTTGGTGCACATTTTATGAA+AGG | + | chr4_3:57494007-57494026 | None:intergenic | 35.0% |
| TTTATTCTTTGTACCATGGC+AGG | - | chr4_3:57494154-57494173 | Msa0650480:intron | 35.0% | |
| CAACAAAAAAAAGTTTGGGC+AGG | - | chr4_3:57494447-57494466 | Msa0650480:intron | 35.0% | |
| !! | TAATCGGTTTGAAATAGGAG+CGG | + | chr4_3:57494502-57494521 | None:intergenic | 35.0% |
| !!! | TTTTAGTTTGAACTCGCAGA+TGG | - | chr4_3:57494766-57494785 | Msa0650480:CDS | 35.0% |
| TTCATCTCCGCAAATGTTAA+AGG | + | chr4_3:57494843-57494862 | None:intergenic | 35.0% | |
| ATATACACAACTAAGAAGCC+AGG | - | chr4_3:57494875-57494894 | Msa0650480:CDS | 35.0% | |
| AAAATTGTTGTCAACAAGCC+TGG | + | chr4_3:57494896-57494915 | None:intergenic | 35.0% | |
| ! | GACAACAATTTTTCATGCGA+TGG | - | chr4_3:57494904-57494923 | Msa0650480:CDS | 35.0% |
| ! | ATTTGAAACTTACATGGGCT+TGG | + | chr4_3:57494997-57495016 | None:intergenic | 35.0% |
| GTACTTGTAGAGTAATTTGG+AGG | - | chr4_3:57495062-57495081 | Msa0650480:intron | 35.0% | |
| CTCAAGCGAAATCGTAAAAA+TGG | + | chr4_3:57495240-57495259 | None:intergenic | 35.0% | |
| !!! | TTTTTTGGTCTCGATGTTGA+CGG | - | chr4_3:57495385-57495404 | Msa0650480:intron | 35.0% |
| CATCGGATTTATTTCAGTCA+TGG | - | chr4_3:57495438-57495457 | Msa0650480:intron | 35.0% | |
| TTCTTCCTTAGTCCTTTCTT+CGG | - | chr4_3:57495577-57495596 | Msa0650480:intron | 35.0% | |
| CATTATTGTTCTCCGAAGAA+AGG | + | chr4_3:57495592-57495611 | None:intergenic | 35.0% | |
| TTCTTCGGAGAACAATAATG+TGG | - | chr4_3:57495592-57495611 | Msa0650480:intron | 35.0% | |
| TCTTCGGAGAACAATAATGT+GGG | - | chr4_3:57495593-57495612 | Msa0650480:intron | 35.0% | |
| TAAAGATGCATGTGTACTCA+CGG | + | chr4_3:57495841-57495860 | None:intergenic | 35.0% | |
| AAGCCAAAATGCAATTTCAG+TGG | - | chr4_3:57495935-57495954 | Msa0650480:CDS | 35.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | - | chr4_3:57493725-57493744 | Msa0650480:intron | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | - | chr4_3:57493726-57493745 | Msa0650480:intron | 40.0% | |
| AAAGTAAACTTGTCCTGCCA+TGG | + | chr4_3:57494170-57494189 | None:intergenic | 40.0% | |
| ! | TGGGCTTGGATTTTTCTCAA+TGG | - | chr4_3:57494346-57494365 | Msa0650480:intron | 40.0% |
| CAAAAAAAAGTTTGGGCAGG+AGG | - | chr4_3:57494450-57494469 | Msa0650480:intron | 40.0% | |
| !! | AATCGGTTTGAAATAGGAGC+GGG | + | chr4_3:57494501-57494520 | None:intergenic | 40.0% |
| GGTAGATTCTGTAACCATTG+TGG | - | chr4_3:57494631-57494650 | Msa0650480:CDS | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | - | chr4_3:57494634-57494653 | Msa0650480:CDS | 40.0% | |
| ! | CACGAGCTTTTCAACAAATG+TGG | - | chr4_3:57494801-57494820 | Msa0650480:CDS | 40.0% |
| AAGAATGTGTGTGTTCGAGA+AGG | - | chr4_3:57495122-57495141 | Msa0650480:intron | 40.0% | |
| ! | CCTCCACTGAAATTGCATTT+TGG | + | chr4_3:57495941-57495960 | None:intergenic | 40.0% |
| CCAAAATGCAATTTCAGTGG+AGG | - | chr4_3:57495938-57495957 | Msa0650480:CDS | 40.0% | |
| AATAAGAAGCAATGTGAGGG+AGG | - | chr4_3:57493725-57493744 | Msa0650480:intron | 40.0% | |
| ATAAGAAGCAATGTGAGGGA+GGG | - | chr4_3:57493726-57493745 | Msa0650480:intron | 40.0% | |
| AAAGTAAACTTGTCCTGCCA+TGG | + | chr4_3:57494170-57494189 | None:intergenic | 40.0% | |
| ! | TGGGCTTGGATTTTTCTCAA+TGG | - | chr4_3:57494346-57494365 | Msa0650480:intron | 40.0% |
| CAAAAAAAAGTTTGGGCAGG+AGG | - | chr4_3:57494450-57494469 | Msa0650480:intron | 40.0% | |
| !! | AATCGGTTTGAAATAGGAGC+GGG | + | chr4_3:57494501-57494520 | None:intergenic | 40.0% |
| GGTAGATTCTGTAACCATTG+TGG | - | chr4_3:57494631-57494650 | Msa0650480:CDS | 40.0% | |
| AGATTCTGTAACCATTGTGG+AGG | - | chr4_3:57494634-57494653 | Msa0650480:CDS | 40.0% | |
| ! | CACGAGCTTTTCAACAAATG+TGG | - | chr4_3:57494801-57494820 | Msa0650480:CDS | 40.0% |
| AAGAATGTGTGTGTTCGAGA+AGG | - | chr4_3:57495122-57495141 | Msa0650480:intron | 40.0% | |
| ! | CCTCCACTGAAATTGCATTT+TGG | + | chr4_3:57495941-57495960 | None:intergenic | 40.0% |
| CCAAAATGCAATTTCAGTGG+AGG | - | chr4_3:57495938-57495957 | Msa0650480:CDS | 40.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | - | chr4_3:57493727-57493746 | Msa0650480:intron | 45.0% | |
| CAAAACACTCTTCGAGGACT+TGG | + | chr4_3:57494025-57494044 | None:intergenic | 45.0% | |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | - | chr4_3:57494023-57494042 | Msa0650480:intron | 45.0% |
| TTAGGCCAAAACACTCTTCG+AGG | + | chr4_3:57494031-57494050 | None:intergenic | 45.0% | |
| ATGACACATCCACGACACTA+CGG | + | chr4_3:57495511-57495530 | None:intergenic | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | + | chr4_3:57495585-57495604 | None:intergenic | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | + | chr4_3:57495649-57495668 | None:intergenic | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | - | chr4_3:57495960-57495979 | Msa0650480:CDS | 45.0% | |
| AGCTAGCAGCAGGAGAAATT+AGG | - | chr4_3:57495970-57495989 | Msa0650480:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | - | chr4_3:57495971-57495990 | Msa0650480:CDS | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | - | chr4_3:57495972-57495991 | Msa0650480:CDS | 45.0% | |
| TAAGAAGCAATGTGAGGGAG+GGG | - | chr4_3:57493727-57493746 | Msa0650480:intron | 45.0% | |
| CAAAACACTCTTCGAGGACT+TGG | + | chr4_3:57494025-57494044 | None:intergenic | 45.0% | |
| !!! | CAAGTCCTCGAAGAGTGTTT+TGG | - | chr4_3:57494023-57494042 | Msa0650480:intron | 45.0% |
| TTAGGCCAAAACACTCTTCG+AGG | + | chr4_3:57494031-57494050 | None:intergenic | 45.0% | |
| ATGACACATCCACGACACTA+CGG | + | chr4_3:57495511-57495530 | None:intergenic | 45.0% | |
| GTTCTCCGAAGAAAGGACTA+AGG | + | chr4_3:57495585-57495604 | None:intergenic | 45.0% | |
| TTCTTCTGGCCAGTAGTCAA+AGG | + | chr4_3:57495649-57495668 | None:intergenic | 45.0% | |
| GAAAGTTACAAGCTAGCAGC+AGG | - | chr4_3:57495960-57495979 | Msa0650480:CDS | 45.0% | |
| AGCTAGCAGCAGGAGAAATT+AGG | - | chr4_3:57495970-57495989 | Msa0650480:CDS | 45.0% | |
| GCTAGCAGCAGGAGAAATTA+GGG | - | chr4_3:57495971-57495990 | Msa0650480:CDS | 45.0% | |
| CTAGCAGCAGGAGAAATTAG+GGG | - | chr4_3:57495972-57495991 | Msa0650480:CDS | 45.0% | |
| !! | AAAAAAAAAAAAAAATTGAA+AGG | + | chr4_3:57494060-57494079 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATATGAATAAT+CGG | + | chr4_3:57494518-57494537 | None:intergenic | 5.0% |
| !! | AAAAAAAAAAAAAAATTGAA+AGG | + | chr4_3:57494060-57494079 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATATGAATAAT+CGG | + | chr4_3:57494518-57494537 | None:intergenic | 5.0% |
| ATGCACGTGCTGAGAGAGAA+AGG | - | chr4_3:57493831-57493850 | Msa0650480:intron | 50.0% | |
| TGCACGTCATTCGACATGCA+TGG | - | chr4_3:57494242-57494261 | Msa0650480:intron | 50.0% | |
| TTGGGCAGGAGGTTGAGATT+AGG | - | chr4_3:57494461-57494480 | Msa0650480:intron | 50.0% | |
| TGGGCAGGAGGTTGAGATTA+GGG | - | chr4_3:57494462-57494481 | Msa0650480:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | + | chr4_3:57494648-57494667 | None:intergenic | 50.0% | |
| TGACACATCCACGACACTAC+GGG | + | chr4_3:57495510-57495529 | None:intergenic | 50.0% | |
| ATGCACGTGCTGAGAGAGAA+AGG | - | chr4_3:57493831-57493850 | Msa0650480:intron | 50.0% | |
| TGCACGTCATTCGACATGCA+TGG | - | chr4_3:57494242-57494261 | Msa0650480:intron | 50.0% | |
| TTGGGCAGGAGGTTGAGATT+AGG | - | chr4_3:57494461-57494480 | Msa0650480:intron | 50.0% | |
| TGGGCAGGAGGTTGAGATTA+GGG | - | chr4_3:57494462-57494481 | Msa0650480:intron | 50.0% | |
| CTTCACTGCTTCCTCCACAA+TGG | + | chr4_3:57494648-57494667 | None:intergenic | 50.0% | |
| TGACACATCCACGACACTAC+GGG | + | chr4_3:57495510-57495529 | None:intergenic | 50.0% | |
| GACACATCCACGACACTACG+GGG | + | chr4_3:57495509-57495528 | None:intergenic | 55.0% | |
| GACACATCCACGACACTACG+GGG | + | chr4_3:57495509-57495528 | None:intergenic | 55.0% | |
| ATTGCGGCCCCGTAGTGTCG+TGG | - | chr4_3:57495499-57495518 | Msa0650480:intron | 65.0% | |
| ATTGCGGCCCCGTAGTGTCG+TGG | - | chr4_3:57495499-57495518 | Msa0650480:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 57493563 | 57496010 | 57493563 | ID=Msa0650480;Name=Msa0650480 |
| chr4_3 | mRNA | 57493563 | 57496010 | 57493563 | ID=Msa0650480-mRNA-1;Parent=Msa0650480;Name=Msa0650480-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|273 |
| chr4_3 | exon | 57495657 | 57496010 | 57495657 | ID=Msa0650480-mRNA-1:exon:15103;Parent=Msa0650480-mRNA-1 |
| chr4_3 | exon | 57494570 | 57494941 | 57494570 | ID=Msa0650480-mRNA-1:exon:15102;Parent=Msa0650480-mRNA-1 |
| chr4_3 | exon | 57493563 | 57493658 | 57493563 | ID=Msa0650480-mRNA-1:exon:15101;Parent=Msa0650480-mRNA-1 |
| chr4_3 | CDS | 57495657 | 57496010 | 57495657 | ID=Msa0650480-mRNA-1:cds;Parent=Msa0650480-mRNA-1 |
| chr4_3 | CDS | 57494570 | 57494941 | 57494570 | ID=Msa0650480-mRNA-1:cds;Parent=Msa0650480-mRNA-1 |
| chr4_3 | CDS | 57493563 | 57493658 | 57493563 | ID=Msa0650480-mRNA-1:cds;Parent=Msa0650480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
