AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651450 MtrunA17_Chr3g0134451 37.175 269 133 5 1 245 1 257 5.22e-46 158
Msa0651450 MtrunA17_Chr4g0044071 100.000 62 0 0 1 62 1 62 3.20e-37 129
Msa0651450 MtrunA17_Chr5g0425191 93.548 62 4 0 1 62 1 62 8.37e-36 125
Msa0651450 MtrunA17_Chr5g0425181 52.555 137 15 3 128 214 15 151 4.05e-34 123
Msa0651450 MtrunA17_Chr5g0425171 73.418 79 16 3 251 324 1 79 1.69e-25 97.4
Msa0651450 MtrunA17_Chr4g0060841 35.393 178 100 5 1 177 1 164 8.76e-24 100
Msa0651450 MtrunA17_Chr7g0246381 67.241 58 19 0 1 58 1 58 6.52e-23 90.5
Msa0651450 MtrunA17_Chr3g0077501 34.254 181 80 2 1 181 1 142 7.74e-23 94.7
Msa0651450 MtrunA17_Chr3g0097101 34.021 194 88 4 1 194 16 169 9.44e-23 95.1
Msa0651450 MtrunA17_Chr5g0417661 66.129 62 21 0 1 62 56 117 5.03e-22 89.7
Msa0651450 MtrunA17_Chr7g0220111 57.143 70 30 0 1 70 1 70 8.01e-22 92.4
Msa0651450 MtrunA17_Chr2g0284911 58.571 70 28 1 1 70 16 84 1.15e-21 92.4
Msa0651450 MtrunA17_Chr5g0420091 55.714 70 31 0 1 70 1 70 1.34e-21 91.3
Msa0651450 MtrunA17_Chr3g0122251 57.143 70 30 0 1 70 1 70 2.35e-21 91.3
Msa0651450 MtrunA17_Chr4g0061671 57.143 70 30 0 1 70 1 70 2.79e-21 89.4
Msa0651450 MtrunA17_Chr8g0377561 64.912 57 20 0 1 57 1 57 3.88e-21 86.7
Msa0651450 MtrunA17_Chr6g0455511 57.143 70 30 0 1 70 1 70 4.65e-21 90.5
Msa0651450 MtrunA17_Chr4g0061691 35.429 175 98 5 1 172 1 163 5.09e-21 90.1
Msa0651450 MtrunA17_Chr8g0380021 67.241 58 19 0 1 58 17 74 7.31e-21 89.7
Msa0651450 MtrunA17_Chr2g0279821 32.683 205 109 6 1 178 1 203 7.74e-21 89.7
Msa0651450 MtrunA17_Chr8g0351051 66.667 57 19 0 1 57 1 57 9.02e-21 89.7
Msa0651450 MtrunA17_Chr7g0246431 33.702 181 81 4 1 181 1 142 1.37e-20 88.2
Msa0651450 MtrunA17_Chr7g0220121 31.492 181 84 2 1 181 1 141 1.55e-20 89.4
Msa0651450 MtrunA17_Chr1g0173161 62.295 61 23 0 1 61 1 61 1.64e-20 84.3
Msa0651450 MtrunA17_Chr8g0351041 57.576 66 28 0 1 66 1 66 2.56e-20 86.3
Msa0651450 MtrunA17_Chr8g0351031 57.576 66 28 0 1 66 1 66 4.37e-20 87.4
Msa0651450 MtrunA17_Chr8g0366231 50.000 78 39 0 1 78 1 78 9.80e-20 86.7
Msa0651450 MtrunA17_Chr5g0412461 31.274 259 130 9 1 258 1 212 1.02e-19 86.3
Msa0651450 MtrunA17_Chr5g0420081 30.928 194 95 3 1 194 1 155 1.79e-19 85.9
Msa0651450 MtrunA17_Chr4g0020221 51.163 86 37 2 1 84 1 83 1.83e-19 86.3
Msa0651450 MtrunA17_Chr3g0125241 54.930 71 31 1 1 70 26 96 3.19e-19 84.3
Msa0651450 MtrunA17_Chr6g0474371 51.429 70 34 0 1 70 1 70 3.46e-19 84.0
Msa0651450 MtrunA17_Chr4g0057151 57.143 70 29 1 1 70 1 69 3.83e-19 84.3
Msa0651450 MtrunA17_Chr2g0308251 47.945 73 38 0 1 73 1 73 5.34e-19 80.5
Msa0651450 MtrunA17_Chr5g0404951 64.912 57 20 0 1 57 1 57 1.02e-18 83.6
Msa0651450 MtrunA17_Chr5g0427921 54.098 61 28 0 1 61 1 61 1.10e-18 78.6
Msa0651450 MtrunA17_Chr5g0419601 36.957 138 70 4 1 138 8 128 1.49e-18 83.2
Msa0651450 MtrunA17_Chr3g0142191 63.158 57 21 0 1 57 1 57 1.96e-18 82.8
Msa0651450 MtrunA17_Chr5g0412271 32.323 198 94 5 1 198 1 158 4.55e-18 81.6
Msa0651450 MtrunA17_Chr5g0411691 40.458 131 73 3 1 127 1 130 5.48e-18 81.6
Msa0651450 MtrunA17_Chr4g0049541 29.384 211 109 2 1 211 1 171 1.41e-17 80.1
Msa0651450 MtrunA17_Chr1g0164791 50.704 71 34 1 1 70 1 71 1.88e-17 80.1
Msa0651450 MtrunA17_Chr2g0317481 33.708 178 93 5 2 178 9 162 3.94e-17 79.3
Msa0651450 MtrunA17_Chr2g0317451 33.708 178 93 5 2 178 9 162 3.94e-17 79.3
Msa0651450 MtrunA17_Chr5g0427401 48.571 70 35 1 1 70 1 69 4.31e-17 79.0
Msa0651450 MtrunA17_Chr1g0159661 50.704 71 34 1 1 70 1 71 5.48e-17 77.8
Msa0651450 MtrunA17_Chr8g0355091 40.000 105 62 1 2 106 9 112 6.03e-17 79.0
Msa0651450 MtrunA17_Chr8g0379021 50.704 71 34 1 2 72 12 81 6.03e-17 77.4
Msa0651450 MtrunA17_Chr4g0018421 42.169 83 48 0 1 83 1 83 6.43e-17 77.8
Msa0651450 MtrunA17_Chr1g0204111 58.621 58 24 0 1 58 17 74 1.06e-16 78.6
Msa0651450 MtrunA17_Chr1g0208581 43.529 85 47 1 2 86 9 92 2.26e-16 77.0
Msa0651450 MtrunA17_Chr3g0099421 51.316 76 35 2 2 76 34 108 2.66e-16 77.4
Msa0651450 MtrunA17_Chr2g0292791 38.136 118 71 2 2 118 9 125 4.09e-16 76.6
Msa0651450 MtrunA17_Chr8g0357771 49.296 71 35 1 1 71 1 70 4.32e-16 75.1
Msa0651450 MtrunA17_Chr1g0206701 47.368 76 38 2 2 76 9 83 4.84e-16 76.3
Msa0651450 MtrunA17_Chr4g0044081 100.000 34 0 0 148 181 8 41 5.14e-16 72.0
Msa0651450 MtrunA17_Chr1g0208561 48.611 72 36 1 2 73 9 79 7.26e-16 75.5
Msa0651450 MtrunA17_Chr1g0166611 52.941 68 29 1 13 77 17 84 9.99e-16 72.8
Msa0651450 MtrunA17_Chr3g0089141 48.611 72 36 1 2 73 9 79 1.02e-15 75.1
Msa0651450 MtrunA17_Chr3g0099411 47.368 76 38 2 2 76 9 83 1.09e-15 75.1
Msa0651450 MtrunA17_Chr1g0206721 47.368 76 38 2 2 76 9 83 1.43e-15 75.1
Msa0651450 MtrunA17_Chr1g0175611 46.575 73 38 1 1 73 1 72 1.61e-15 73.2
Msa0651450 MtrunA17_Chr2g0333981 50.704 71 34 1 1 71 11 80 1.88e-15 73.2
Msa0651450 MtrunA17_Chr4g0049901 55.932 59 26 0 1 59 27 85 2.09e-15 74.7
Msa0651450 MtrunA17_Chr1g0188671 50.000 76 36 2 2 76 47 121 2.91e-15 74.7
Msa0651450 MtrunA17_Chr4g0074101 52.113 71 33 1 1 71 1 70 3.96e-15 72.8
Msa0651450 MtrunA17_Chr1g0206991 41.176 85 49 1 2 86 9 92 4.58e-15 72.4
Msa0651450 MtrunA17_Chr2g0325971 42.353 85 48 1 2 86 9 92 4.89e-15 73.2
Msa0651450 MtrunA17_Chr5g0422941 49.367 79 38 2 2 79 9 86 6.90e-15 73.2
Msa0651450 MtrunA17_Chr1g0187361 50.000 76 36 2 2 76 9 83 7.32e-15 72.8
Msa0651450 MtrunA17_Chr1g0149391 47.887 71 36 1 2 72 9 78 7.76e-15 72.8
Msa0651450 MtrunA17_Chr4g0018951 34.615 130 78 4 16 145 26 148 7.76e-15 71.2
Msa0651450 MtrunA17_Chr3g0089151 41.758 91 49 4 2 91 9 96 8.29e-15 70.5
Msa0651450 MtrunA17_Chr8g0376821 47.887 71 36 1 1 71 1 70 1.81e-14 70.5
Msa0651450 MtrunA17_Chr2g0300441 38.947 95 57 1 2 96 9 102 2.88e-14 71.2
Msa0651450 MtrunA17_Chr1g0180591 46.575 73 38 1 1 73 1 72 3.49e-14 69.7
Msa0651450 MtrunA17_Chr3g0119901 44.444 72 39 1 1 72 8 78 3.97e-14 70.1
Msa0651450 MtrunA17_Chr1g0169761 47.887 71 36 1 1 71 1 70 6.12e-14 68.9
Msa0651450 MtrunA17_Chr5g0422421 47.887 71 36 1 2 72 9 78 1.37e-13 69.3
Msa0651450 MtrunA17_Chr1g0175601 32.168 143 81 4 1 130 1 140 2.20e-13 67.4
Msa0651450 MtrunA17_Chr3g0085241 43.662 71 39 1 1 71 40 109 3.40e-13 68.6
Msa0651450 MtrunA17_Chr8g0356071 43.662 71 39 1 1 71 1 70 6.71e-13 65.9
Msa0651450 MtrunA17_Chr2g0300421 40.000 85 50 1 2 86 9 92 7.11e-13 65.9
Msa0651450 MtrunA17_Chr4g0071601 32.275 189 110 5 1 184 11 186 6.70e-12 63.5
Msa0651450 MtrunA17_Chr4g0052061 43.662 71 39 1 1 71 1 70 7.50e-12 62.8
Msa0651450 MtrunA17_Chr6g0457851 34.118 85 49 1 1 78 11 95 1.99e-11 64.3
Msa0651450 MtrunA17_Chr4g0052081 50.000 52 26 0 1 52 1 52 3.95e-11 61.2
Msa0651450 MtrunA17_Chr1g0206691 35.577 104 65 2 11 113 1 103 5.79e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651450 AT1G22130.1 51.084 323 124 7 1 298 1 314 1.49e-94 284
Msa0651450 AT1G77980.1 46.802 344 127 6 1 300 1 332 1.99e-90 273
Msa0651450 AT1G77950.3 59.563 183 72 1 1 181 1 183 2.70e-72 224
Msa0651450 AT1G77950.2 59.563 183 72 1 1 181 1 183 2.70e-72 224
Msa0651450 AT1G77950.1 59.563 183 72 1 1 181 1 183 2.70e-72 224
Msa0651450 AT1G77950.4 59.563 183 72 1 1 181 1 183 2.70e-72 224
Msa0651450 AT1G18750.4 44.681 141 64 5 1 140 1 128 8.37e-26 106
Msa0651450 AT1G18750.1 44.681 141 64 5 1 140 1 128 1.05e-25 106
Msa0651450 AT2G03060.3 35.165 182 103 4 1 181 1 168 8.73e-25 103
Msa0651450 AT2G03060.7 35.165 182 103 4 1 181 1 168 8.73e-25 103
Msa0651450 AT2G03060.1 35.165 182 103 4 1 181 1 168 8.73e-25 103
Msa0651450 AT1G18750.3 60.759 79 30 1 1 78 1 79 1.05e-24 103
Msa0651450 AT2G03060.2 35.165 182 103 4 1 181 1 168 1.15e-24 103
Msa0651450 AT4G09960.2 33.158 190 88 3 1 190 1 151 4.05e-24 98.2
Msa0651450 AT4G37435.1 32.418 182 108 3 1 181 1 168 3.90e-23 94.7
Msa0651450 AT4G09960.1 33.702 181 81 3 1 181 1 142 6.38e-23 95.5
Msa0651450 AT4G09960.6 33.702 181 81 3 1 181 2 143 7.67e-23 95.1
Msa0651450 AT4G09960.5 33.702 181 81 3 1 181 11 152 1.03e-22 95.1
Msa0651450 AT4G09960.3 33.702 181 81 3 1 181 27 168 1.97e-22 94.7
Msa0651450 AT1G69540.2 35.135 185 106 5 1 184 1 172 2.46e-22 96.7
Msa0651450 AT1G69540.1 35.135 185 106 5 1 184 1 172 2.71e-22 95.9
Msa0651450 AT2G45650.1 61.429 70 26 1 1 70 1 69 4.75e-22 93.6
Msa0651450 AT4G09960.4 33.702 181 81 3 1 181 96 237 8.77e-22 94.4
Msa0651450 AT5G60910.1 31.959 194 93 4 1 194 1 155 1.60e-21 92.0
Msa0651450 AT1G24260.1 35.393 178 98 6 1 173 1 166 2.33e-21 91.7
Msa0651450 AT4G11880.2 58.571 70 29 0 1 70 1 70 2.58e-21 89.7
Msa0651450 AT4G11880.3 58.571 70 29 0 1 70 1 70 2.58e-21 89.7
Msa0651450 AT5G15800.1 36.413 184 86 7 1 173 1 164 3.71e-21 91.3
Msa0651450 AT3G58780.2 63.934 61 22 0 1 61 16 76 3.80e-21 90.9
Msa0651450 AT1G24260.3 57.143 70 30 0 1 70 1 70 4.14e-21 90.9
Msa0651450 AT1G24260.2 34.483 174 106 4 1 173 1 167 4.23e-21 90.9
Msa0651450 AT5G15800.2 36.413 184 86 7 1 173 1 164 5.16e-21 90.9
Msa0651450 AT4G18960.1 60.870 69 26 1 2 70 18 85 6.01e-21 90.5
Msa0651450 AT2G42830.2 33.505 194 103 7 1 183 16 194 6.24e-21 90.5
Msa0651450 AT4G11880.4 58.571 70 29 0 1 70 1 70 6.36e-21 89.7
Msa0651450 AT4G11880.1 58.571 70 29 0 1 70 1 70 6.36e-21 89.7
Msa0651450 AT2G42830.1 33.333 192 104 7 1 183 16 192 6.86e-21 90.5
Msa0651450 AT3G61120.1 35.260 173 100 4 1 165 1 169 9.60e-21 89.7
Msa0651450 AT3G58780.1 57.143 70 29 1 1 70 16 84 1.25e-20 89.7
Msa0651450 AT3G02310.1 55.714 70 31 0 1 70 1 70 1.35e-20 89.7
Msa0651450 AT1G26310.1 34.270 178 90 4 1 151 1 178 1.39e-20 89.7
Msa0651450 AT3G58780.5 57.143 70 29 1 1 70 22 90 1.44e-20 89.7
Msa0651450 AT2G03710.3 66.667 57 19 0 1 57 1 57 1.65e-20 87.8
Msa0651450 AT3G02310.2 55.714 70 31 0 1 70 1 70 1.74e-20 88.2
Msa0651450 AT5G10140.2 58.571 70 29 0 1 70 1 70 2.22e-20 87.0
Msa0651450 AT2G45660.2 53.521 71 32 1 1 71 1 70 2.34e-20 86.7
Msa0651450 AT2G45660.1 33.503 197 108 8 1 192 1 179 2.37e-20 88.2
Msa0651450 AT3G30260.1 52.857 70 33 0 1 70 1 70 2.53e-20 89.0
Msa0651450 AT5G10140.4 58.571 70 29 0 1 70 1 70 2.71e-20 87.0
Msa0651450 AT5G10140.1 58.571 70 29 0 1 70 1 70 2.79e-20 87.4
Msa0651450 AT3G58780.3 65.517 58 20 0 1 58 16 73 3.00e-20 89.0
Msa0651450 AT4G22950.2 62.712 59 22 0 1 59 1 59 3.06e-20 86.7
Msa0651450 AT2G03710.1 60.870 69 23 1 1 65 1 69 3.22e-20 88.6
Msa0651450 AT3G58780.4 57.143 70 29 1 1 70 16 84 3.27e-20 89.4
Msa0651450 AT2G03710.2 60.870 69 23 1 1 65 1 69 3.53e-20 88.6
Msa0651450 AT5G10140.3 58.571 70 29 0 1 70 1 70 3.72e-20 87.0
Msa0651450 AT1G69120.2 30.928 194 95 4 1 194 1 155 4.37e-20 87.8
Msa0651450 AT1G69120.1 30.928 194 95 4 1 194 1 155 5.50e-20 88.2
Msa0651450 AT3G57390.3 60.000 70 27 1 1 70 1 69 6.26e-20 87.4
Msa0651450 AT3G57390.1 60.000 70 27 1 1 70 1 69 9.64e-20 87.4
Msa0651450 AT4G22950.3 57.143 70 29 1 1 70 1 69 1.00e-19 86.7
Msa0651450 AT4G22950.1 57.143 70 29 1 1 70 1 69 1.00e-19 86.7
Msa0651450 AT5G62165.6 32.418 182 82 4 1 181 1 142 1.23e-19 84.3
Msa0651450 AT5G62165.9 32.418 182 82 4 1 181 1 142 1.23e-19 84.3
Msa0651450 AT5G62165.7 32.418 182 82 4 1 181 1 142 1.23e-19 84.3
Msa0651450 AT5G62165.8 32.418 182 82 4 1 181 1 142 1.23e-19 84.3
Msa0651450 AT5G62165.13 32.418 182 82 4 1 181 1 142 1.23e-19 84.3
Msa0651450 AT3G57230.2 55.714 70 30 1 1 70 1 69 1.40e-19 84.0
Msa0651450 AT5G62165.17 32.240 183 83 4 1 182 1 143 1.60e-19 84.3
Msa0651450 AT5G62165.12 32.240 183 83 4 1 182 1 143 1.60e-19 84.3
Msa0651450 AT5G62165.11 32.240 183 83 4 1 182 1 143 1.60e-19 84.3
Msa0651450 AT5G62165.10 32.461 191 88 4 1 190 1 151 1.91e-19 85.1
Msa0651450 AT5G62165.4 32.461 191 88 4 1 190 1 151 1.91e-19 85.1
Msa0651450 AT5G51870.2 31.492 181 86 3 1 181 1 143 2.40e-19 84.3
Msa0651450 AT4G24540.1 33.862 189 72 5 1 182 1 143 2.61e-19 85.5
Msa0651450 AT5G13790.1 56.944 72 30 1 1 72 1 71 3.53e-19 85.9
Msa0651450 AT5G13790.2 56.944 72 30 1 1 72 1 71 3.55e-19 86.3
Msa0651450 AT5G65070.4 55.714 70 31 0 1 70 1 70 3.59e-19 83.2
Msa0651450 AT3G54340.1 64.912 57 20 0 1 57 1 57 4.10e-19 85.1
Msa0651450 AT5G65070.1 55.714 70 31 0 1 70 1 70 4.26e-19 84.3
Msa0651450 AT5G51870.1 32.990 194 99 6 1 183 1 174 4.78e-19 84.3
Msa0651450 AT5G62165.3 32.240 183 83 4 1 182 1 143 6.54e-19 84.0
Msa0651450 AT5G62165.1 32.240 183 83 4 1 182 1 143 6.54e-19 84.0
Msa0651450 AT5G62165.2 32.240 183 83 4 1 182 1 143 6.54e-19 84.0
Msa0651450 AT5G51870.5 31.492 181 86 3 1 181 24 166 6.82e-19 83.6
Msa0651450 AT3G57230.1 55.714 70 30 1 1 70 1 69 8.39e-19 84.3
Msa0651450 AT3G57230.4 55.714 70 30 1 1 70 1 69 8.39e-19 84.3
Msa0651450 AT5G65070.5 55.714 70 31 0 1 70 1 70 1.12e-18 83.6
Msa0651450 AT5G51870.4 33.158 190 96 6 1 179 1 170 1.31e-18 83.6
Msa0651450 AT5G65070.2 55.714 70 31 0 1 70 1 70 1.37e-18 83.6
Msa0651450 AT5G51870.3 33.158 190 96 6 1 179 11 180 1.46e-18 83.6
Msa0651450 AT5G23260.1 38.509 161 87 5 1 153 17 173 1.54e-18 84.3
Msa0651450 AT5G23260.4 46.296 108 51 3 1 101 17 124 1.58e-18 84.3
Msa0651450 AT5G23260.3 46.296 108 51 3 1 101 1 108 1.71e-18 83.6
Msa0651450 AT5G23260.2 46.296 108 51 3 1 101 1 108 1.77e-18 84.0
Msa0651450 AT5G65070.3 59.155 71 28 1 1 70 1 71 2.10e-18 83.2
Msa0651450 AT1G71692.1 44.444 81 45 0 1 81 1 81 2.73e-18 82.4
Msa0651450 AT5G65050.5 36.306 157 90 4 1 149 1 155 1.34e-17 79.7
Msa0651450 AT2G14210.1 44.156 77 43 0 1 77 1 77 1.34e-17 80.9
Msa0651450 AT2G14210.2 44.156 77 43 0 1 77 1 77 1.80e-17 80.5
Msa0651450 AT5G62165.14 55.714 70 30 1 1 70 1 69 1.96e-17 77.0
Msa0651450 AT5G65050.2 43.810 105 53 2 1 100 1 104 3.41e-17 78.6
Msa0651450 AT2G22540.3 51.429 70 33 1 1 70 1 69 4.92e-17 79.3
Msa0651450 AT2G22540.1 51.429 70 33 1 1 70 1 69 4.92e-17 79.3
Msa0651450 AT5G65050.3 43.810 105 53 2 1 100 1 104 7.27e-17 78.2
Msa0651450 AT5G65050.1 43.810 105 53 2 1 100 1 104 7.97e-17 77.8
Msa0651450 AT4G37940.3 51.429 70 33 1 1 70 1 69 8.13e-17 77.4
Msa0651450 AT5G20240.2 61.111 54 21 0 1 54 1 54 1.14e-16 76.3
Msa0651450 AT4G37940.1 51.429 70 33 1 1 70 1 69 1.35e-16 78.2
Msa0651450 AT4G37940.4 51.429 70 33 1 1 70 1 69 1.43e-16 77.8
Msa0651450 AT5G51860.2 52.857 70 32 1 1 70 1 69 1.89e-16 77.0
Msa0651450 AT5G20240.1 61.111 54 21 0 1 54 1 54 2.21e-16 77.0
Msa0651450 AT5G51860.1 52.857 70 32 1 1 70 1 69 2.22e-16 77.0
Msa0651450 AT1G31140.2 52.113 71 33 1 1 70 1 71 4.13e-16 76.3
Msa0651450 AT1G31140.1 52.113 71 33 1 1 70 1 71 4.23e-16 76.3
Msa0651450 AT5G65060.2 43.137 102 52 2 1 97 1 101 4.94e-16 75.5
Msa0651450 AT5G65060.1 42.857 105 54 2 1 100 1 104 5.04e-16 75.9
Msa0651450 AT2G22540.2 59.259 54 22 0 1 54 1 54 5.64e-16 76.6
Msa0651450 AT5G65060.3 43.137 102 52 2 1 97 1 101 7.83e-16 75.1
Msa0651450 AT2G22630.1 54.237 59 27 0 1 59 1 59 2.94e-15 74.3
Msa0651450 AT2G22630.2 54.237 59 27 0 1 59 1 59 2.94e-15 74.3
Msa0651450 AT5G65080.3 47.143 70 37 0 1 70 8 77 8.40e-15 72.4
Msa0651450 AT5G65080.2 56.452 62 26 1 1 61 8 69 4.41e-14 70.5
Msa0651450 AT2G26320.1 43.750 80 44 1 1 79 17 96 4.68e-14 67.8
Msa0651450 AT5G60440.1 26.339 224 133 8 2 218 7 205 1.57e-13 70.5
Msa0651450 AT1G47760.1 53.846 52 24 0 1 52 1 52 2.03e-13 68.2
Msa0651450 AT3G66656.1 41.667 72 41 1 1 72 1 71 4.17e-13 67.0
Msa0651450 AT1G01530.1 52.632 57 27 0 1 57 6 62 6.79e-13 67.8
Msa0651450 AT1G77080.11 54.286 70 32 0 1 70 1 70 7.17e-13 66.6
Msa0651450 AT1G77080.5 54.286 70 32 0 1 70 1 70 7.61e-13 66.2
Msa0651450 AT1G77080.4 54.286 70 32 0 1 70 1 70 9.16e-13 66.6
Msa0651450 AT2G24840.1 45.833 72 38 1 1 72 62 132 9.48e-13 67.8
Msa0651450 AT1G77080.12 75.000 40 10 0 1 40 1 40 1.61e-12 64.7
Msa0651450 AT1G77080.8 45.714 105 49 3 1 99 1 103 1.87e-12 66.2
Msa0651450 AT1G77080.2 75.000 40 10 0 1 40 1 40 2.86e-12 65.1
Msa0651450 AT4G36590.1 46.479 71 37 1 2 72 7 76 6.96e-12 65.1
Msa0651450 AT1G72350.1 54.386 57 26 0 2 58 43 99 9.22e-12 64.3
Msa0651450 AT2G34440.1 39.437 71 42 1 1 71 1 70 1.04e-11 63.2

Find 57 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATAGATGTCATCTTTAA+TGG 0.172713 4_3:-58830035 None:intergenic
GAACATACTTATCTCTTTCT+TGG 0.254516 4_3:-58828845 None:intergenic
GATTTGTCCTCTACTGTATA+TGG 0.307544 4_3:+58831765 Msa0651450:CDS
GCTTGAATGTTTCCATCGTT+TGG 0.313030 4_3:-58831858 None:intergenic
AAATGGTAGAGGAGCAAATA+AGG 0.337725 4_3:+58829888 Msa0651450:CDS
AAATGATTAAGACGATTTGA+TGG 0.363568 4_3:-58828247 None:intergenic
TACTTATCTCTTTCTTGGTC+AGG 0.364285 4_3:-58828840 None:intergenic
GTAATCTACTAACTTCTTGT+TGG 0.390980 4_3:-58829853 None:intergenic
CAACCTAATCACCAGCTTCA+TGG 0.392030 4_3:+58832068 Msa0651450:CDS
CTATAGATGTCATCTTTAAT+GGG 0.404310 4_3:-58830034 None:intergenic
GATGTCATCTTTAATGGGTC+GGG 0.420679 4_3:-58830029 None:intergenic
TCAACTTGTGAGGCAGTGAT+TGG 0.428516 4_3:-58832005 None:intergenic
GTCCATGTAGCATCATATCT+TGG 0.432097 4_3:-58831971 None:intergenic
TGACCATGAAGCTGGTGATT+AGG 0.440702 4_3:-58832071 None:intergenic
TTACGAACTTGGACATATGA+AGG 0.447873 4_3:-58829535 None:intergenic
ACATATTCAAAACGTAGAAA+TGG 0.460629 4_3:+58828157 Msa0651450:CDS
GTTGTTGATCCACGAGGTAT+AGG 0.473863 4_3:+58831816 Msa0651450:CDS
AGAAACCTTGGCACGTGTCA+TGG 0.475032 4_3:+58830088 Msa0651450:CDS
ATTACAACAACAACTTCAAA+TGG 0.479837 4_3:+58829871 Msa0651450:CDS
GGCACGTGTCATGGAGAGAA+AGG 0.482362 4_3:+58830097 Msa0651450:CDS
CAGCTCCTATGGATCCTCTC+AGG 0.486930 4_3:+58831552 Msa0651450:CDS
TACCTTCGGTAGGGTAGCTC+AGG 0.489363 4_3:-58828986 None:intergenic
AGATGTCATCTTTAATGGGT+CGG 0.506566 4_3:-58830030 None:intergenic
TCTATAGCAGAGCTTGAAAC+CGG 0.508243 4_3:+58830050 Msa0651450:CDS
CCTCTTTCGAGAATGTTAGT+TGG 0.510880 4_3:+58831486 Msa0651450:CDS
CATATTCAACATGACATTGT+GGG 0.521815 4_3:+58831921 Msa0651450:CDS
AACATTCAAGCGTGGCCTCA+AGG 0.529883 4_3:+58831870 Msa0651450:CDS
TCTCTCCATGACACGTGCCA+AGG 0.532693 4_3:-58830093 None:intergenic
TCAGGATACTTCAGCAGTTG+AGG 0.541962 4_3:+58829495 Msa0651450:CDS
CCAACTAACATTCTCGAAAG+AGG 0.545727 4_3:-58831486 None:intergenic
AGACATTAACTCTGAGGTTG+AGG 0.553929 4_3:+58829690 Msa0651450:CDS
CATCGTTTGGATTTGCCACG+TGG 0.555678 4_3:-58831845 None:intergenic
TACGAACTTGGACATATGAA+GGG 0.559614 4_3:-58829534 None:intergenic
TCTGAGAGTATACCTTCGGT+AGG 0.566583 4_3:-58828996 None:intergenic
ATCCAAGATATGATGCTACA+TGG 0.575427 4_3:+58831969 Msa0651450:CDS
TGAAACCTGAGAGGATCCAT+AGG 0.583931 4_3:-58831557 None:intergenic
TGTGTCATTGACCATGAAGC+TGG 0.589166 4_3:-58832079 None:intergenic
ACATATTCAACATGACATTG+TGG 0.591900 4_3:+58831920 Msa0651450:CDS
ACAACAACTTCAAATGGTAG+AGG 0.593286 4_3:+58829877 Msa0651450:CDS
TTTGGGAGGTTCAACTTGTG+AGG 0.593597 4_3:-58832015 None:intergenic
CATGAAGCTGGTGATTAGGT+TGG 0.602550 4_3:-58832067 None:intergenic
CTGAGAGTATACCTTCGGTA+GGG 0.605428 4_3:-58828995 None:intergenic
TTCCTGAGCTACCCTACCGA+AGG 0.607215 4_3:+58828984 Msa0651450:CDS
TGAATATGTTGCTGATGTTG+AGG 0.630783 4_3:-58831906 None:intergenic
TGGCACTCTCCTATACCTCG+TGG 0.644590 4_3:-58831825 None:intergenic
CTAACATTCTCGAAAGAGGT+CGG 0.649958 4_3:-58831482 None:intergenic
TTCGGGAGACATTAACTCTG+AGG 0.657636 4_3:+58829684 Msa0651450:CDS
AATGTTAGTTGGCTGCAAGA+TGG 0.658329 4_3:+58831497 Msa0651450:CDS
GGATATAATGTGTATCCTTG+AGG 0.659375 4_3:-58831885 None:intergenic
GTTAGTTGGCTGCAAGATGG+TGG 0.663132 4_3:+58831500 Msa0651450:CDS
GAGCAATATCAATATCACAA+AGG 0.664332 4_3:-58828210 None:intergenic
AAATGAACCATATACAGTAG+AGG 0.670428 4_3:-58831772 None:intergenic
TGAAGAAATTGAAACCTGAG+AGG 0.678146 4_3:-58831566 None:intergenic
CACGTGGCAAATCCAAACGA+TGG 0.684598 4_3:+58831846 Msa0651450:CDS
ACGATGGAAACATTCAAGCG+TGG 0.690768 4_3:+58831862 Msa0651450:CDS
TCAAATGTTGTTGATCCACG+AGG 0.725134 4_3:+58831810 Msa0651450:CDS
AGGTATAGGAGAGTGCCACG+TGG 0.767050 4_3:+58831830 Msa0651450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATAATTAAAATATTT+TGG - chr4_3:58829961-58829980 None:intergenic 0.0%
!! AAATTAATTCACTTTATAAT+TGG - chr4_3:58828639-58828658 None:intergenic 10.0%
!! ATTACTTTATATTAGAATTT+AGG + chr4_3:58829586-58829605 Msa0651450:intron 10.0%
!!! TTACATAATATAATTTTGAA+GGG - chr4_3:58829769-58829788 None:intergenic 10.0%
!!! TTCTTCATTTTTTTATTTTT+TGG + chr4_3:58830152-58830171 Msa0651450:intron 10.0%
!!! TCTTCATTTTTTTATTTTTT+GGG + chr4_3:58830153-58830172 Msa0651450:intron 10.0%
!!! TTTGATAGTTTATTTATATA+TGG + chr4_3:58830183-58830202 Msa0651450:intron 10.0%
!!! TTGATAGTTTATTTATATAT+GGG + chr4_3:58830184-58830203 Msa0651450:intron 10.0%
!!! TTTTTTTTTTTTTGTAGTAT+TGG + chr4_3:58831386-58831405 Msa0651450:intron 10.0%
!! AAATTATATATGAATCATTA+GGG - chr4_3:58831613-58831632 None:intergenic 10.0%
!! AAAATTATATATGAATCATT+AGG - chr4_3:58831614-58831633 None:intergenic 10.0%
!! TTTACAAACTATATATGTAT+TGG + chr4_3:58828325-58828344 Msa0651450:intron 15.0%
!! AATAAAGTTATTATACACTA+TGG - chr4_3:58828724-58828743 None:intergenic 15.0%
!! TCATTTATTTATTTATTTGC+AGG + chr4_3:58829176-58829195 Msa0651450:intron 15.0%
!! CATTTATTTATTTATTTGCA+GGG + chr4_3:58829177-58829196 Msa0651450:intron 15.0%
!! ATTTATTTATTTATTTGCAG+GGG + chr4_3:58829178-58829197 Msa0651450:intron 15.0%
!! AAAGTTATTATACACATTAT+TGG + chr4_3:58829323-58829342 Msa0651450:intron 15.0%
!!! TTAAACATTTTTTACATGTA+AGG - chr4_3:58829366-58829385 None:intergenic 15.0%
!!! GTTACATAATATAATTTTGA+AGG - chr4_3:58829770-58829789 None:intergenic 15.0%
!!! CTTCATTTTTTTATTTTTTG+GGG + chr4_3:58830154-58830173 Msa0651450:intron 15.0%
!! ATGTTATGTAATTAAATGTT+TGG + chr4_3:58831301-58831320 Msa0651450:intron 15.0%
!!! TGAGTTTCTTTTTTAATAAT+TGG - chr4_3:58831652-58831671 None:intergenic 15.0%
!! ATAATATTTGATCTATGTAT+AGG + chr4_3:58831742-58831761 Msa0651450:intron 15.0%
!! TAATATTTGATCTATGTATA+GGG + chr4_3:58831743-58831762 Msa0651450:intron 15.0%
!! AAAATCTATCAAAAACAATC+AGG - chr4_3:58828398-58828417 None:intergenic 20.0%
!!! CATTTATGTTTTAGATACAA+TGG + chr4_3:58828471-58828490 Msa0651450:intron 20.0%
!!! TATTCTTTTCTTTTCTTCTA+TGG + chr4_3:58828552-58828571 Msa0651450:intron 20.0%
!! TTGAATAAAACCTATAGATT+AGG + chr4_3:58828606-58828625 Msa0651450:intron 20.0%
!! AAATATAACAACATCACTAT+GGG - chr4_3:58828773-58828792 None:intergenic 20.0%
!! AAAATATAACAACATCACTA+TGG - chr4_3:58828774-58828793 None:intergenic 20.0%
!! AAACAATTAAGAAATGAAGA+AGG - chr4_3:58829062-58829081 None:intergenic 20.0%
!! ATGTGACAAAGATTAATTAA+AGG - chr4_3:58829264-58829283 None:intergenic 20.0%
!! GTATAATAACTTTATACTGA+CGG - chr4_3:58829316-58829335 None:intergenic 20.0%
!! TCAAAAATTGTTCTAATGTT+TGG + chr4_3:58829981-58830000 Msa0651450:intron 20.0%
!! CAAAAATTGTTCTAATGTTT+GGG + chr4_3:58829982-58830001 Msa0651450:intron 20.0%
!! AAAAATTGTTCTAATGTTTG+GGG + chr4_3:58829983-58830002 Msa0651450:intron 20.0%
!! ACTTTCAGTTTGTAAAAAAT+TGG + chr4_3:58830421-58830440 Msa0651450:intron 20.0%
!! CTTTCAGTTTGTAAAAAATT+GGG + chr4_3:58830422-58830441 Msa0651450:intron 20.0%
!! TATATTACGAATTGGAATTT+CGG + chr4_3:58830475-58830494 Msa0651450:intron 20.0%
!! AGAGAAATTTGAGAAATTAA+AGG + chr4_3:58830568-58830587 Msa0651450:intron 20.0%
!! TAGGAAAAATGTAGAAATTA+TGG + chr4_3:58830713-58830732 Msa0651450:intron 20.0%
!! TTGTAATAATTCATTGATAG+TGG + chr4_3:58830786-58830805 Msa0651450:intron 20.0%
!! TTTATTCCTAGATTAAATCT+AGG + chr4_3:58830929-58830948 Msa0651450:intron 20.0%
!! AAAAGTAGTAACTAATATCA+AGG - chr4_3:58830984-58831003 None:intergenic 20.0%
!!! TATTCTGTTGAATCATTTTT+GGG - chr4_3:58832035-58832054 None:intergenic 20.0%
!!! ATATTCTGTTGAATCATTTT+TGG - chr4_3:58832036-58832055 None:intergenic 20.0%
! ACATATTCAAAACGTAGAAA+TGG + chr4_3:58828157-58828176 Msa0651450:CDS 25.0%
! AAATGATTAAGACGATTTGA+TGG - chr4_3:58828250-58828269 None:intergenic 25.0%
!!! AATCGTCTTAATCATTTTTC+AGG + chr4_3:58828253-58828272 Msa0651450:CDS 25.0%
!!! ATCATTTTTCAGGTAAAAGA+AGG + chr4_3:58828263-58828282 Msa0651450:CDS 25.0%
! GAAGAAGAAAAATATGAAGA+GGG - chr4_3:58828300-58828319 None:intergenic 25.0%
! AGAAGAAGAAAAATATGAAG+AGG - chr4_3:58828301-58828320 None:intergenic 25.0%
!! TTTCTTTTCTTCTATGGATT+AGG + chr4_3:58828558-58828577 Msa0651450:intron 25.0%
!!! GTTATATTTTTGTTGTAAGC+AGG + chr4_3:58828784-58828803 Msa0651450:intron 25.0%
! TGAAAACTTCTAAACACATT+AGG + chr4_3:58828907-58828926 Msa0651450:intron 25.0%
! AATTAGTAACAAAAGAGCAA+AGG - chr4_3:58829150-58829169 None:intergenic 25.0%
! TTTCTCTAACATTTACTGAT+AGG + chr4_3:58829221-58829240 Msa0651450:intron 25.0%
! ATTTCACATATTTACGAACT+TGG - chr4_3:58829549-58829568 None:intergenic 25.0%
! TAGATGAAACAATATAGGAA+AGG - chr4_3:58829650-58829669 None:intergenic 25.0%
! CTAGTTAAGAAGAGAATTTA+AGG - chr4_3:58829828-58829847 None:intergenic 25.0%
! CTTAAATTCTCTTCTTAACT+AGG + chr4_3:58829826-58829845 Msa0651450:intron 25.0%
! ATTACAACAACAACTTCAAA+TGG + chr4_3:58829871-58829890 Msa0651450:CDS 25.0%
! CTATAGATGTCATCTTTAAT+GGG - chr4_3:58830037-58830056 None:intergenic 25.0%
! AAAACATGCATGTTTATTCA+TGG + chr4_3:58830218-58830237 Msa0651450:intron 25.0%
! TCGAATAGTATATTACGAAT+TGG + chr4_3:58830467-58830486 Msa0651450:intron 25.0%
! ATATTACGAATTGGAATTTC+GGG + chr4_3:58830476-58830495 Msa0651450:intron 25.0%
! GAAATTTGAGAAATTAAAGG+AGG + chr4_3:58830571-58830590 Msa0651450:intron 25.0%
! AAATTAAAGGAGGTAACTTT+AGG + chr4_3:58830581-58830600 Msa0651450:intron 25.0%
! AATTAAAGGAGGTAACTTTA+GGG + chr4_3:58830582-58830601 Msa0651450:intron 25.0%
!! ATACAAGAAATTAGCTTAGA+AGG - chr4_3:58830753-58830772 None:intergenic 25.0%
! AACAAACCTAGATTTAATCT+AGG - chr4_3:58830938-58830957 None:intergenic 25.0%
! TTATGCTAACAAGTATTCTA+AGG + chr4_3:58831113-58831132 Msa0651450:intron 25.0%
!!! CTTCTAAATACGTGTTTTTA+AGG + chr4_3:58831252-58831271 Msa0651450:intron 25.0%
!!! TTTTTGTAGTATTGGTATAG+TGG + chr4_3:58831394-58831413 Msa0651450:intron 25.0%
! AAAATCACAAAATTCATGAC+AGG + chr4_3:58831454-58831473 Msa0651450:intron 25.0%
! AAATCACAAAATTCATGACA+GGG + chr4_3:58831455-58831474 Msa0651450:intron 25.0%
! AAAGATCAAGTAGTAAATGA+GGG - chr4_3:58831710-58831729 None:intergenic 25.0%
! TAAAGATCAAGTAGTAAATG+AGG - chr4_3:58831711-58831730 None:intergenic 25.0%
!! TATATGGTTCATTTTCACAA+GGG + chr4_3:58831781-58831800 Msa0651450:CDS 25.0%
GAGCAATATCAATATCACAA+AGG - chr4_3:58828213-58828232 None:intergenic 30.0%
!! GTTTTAGATACAATGGTTTG+TGG + chr4_3:58828478-58828497 Msa0651450:intron 30.0%
!! ATTTGACTTGAAATCATTGC+TGG + chr4_3:58828655-58828674 Msa0651450:intron 30.0%
GAACATACTTATCTCTTTCT+TGG - chr4_3:58828848-58828867 None:intergenic 30.0%
AGCAGTAGATGAAACAATAT+AGG - chr4_3:58829655-58829674 None:intergenic 30.0%
GTAATCTACTAACTTCTTGT+TGG - chr4_3:58829856-58829875 None:intergenic 30.0%
GCTATAGATGTCATCTTTAA+TGG - chr4_3:58830038-58830057 None:intergenic 30.0%
!!! TTCTACTACGTTTTTTTCAC+CGG - chr4_3:58830072-58830091 None:intergenic 30.0%
AAAAAACGTAGTAGAAACCT+TGG + chr4_3:58830076-58830095 Msa0651450:CDS 30.0%
TTAATTACCTGAATAGCTGA+TGG - chr4_3:58830286-58830305 None:intergenic 30.0%
TGTCACTCAAAATTGAGATT+TGG + chr4_3:58830327-58830346 Msa0651450:intron 30.0%
GAACCTTATATGTCAAAATC+GGG - chr4_3:58830449-58830468 None:intergenic 30.0%
CGAACCTTATATGTCAAAAT+CGG - chr4_3:58830450-58830469 None:intergenic 30.0%
TATTACGAATTGGAATTTCG+GGG + chr4_3:58830477-58830496 Msa0651450:intron 30.0%
!! TTCATTCTTCATGTTTTGAG+AGG + chr4_3:58830534-58830553 Msa0651450:intron 30.0%
!!! TCATTCTTCATGTTTTGAGA+GGG + chr4_3:58830535-58830554 Msa0651450:intron 30.0%
GAAACATTTGTAAACACCTT+GGG + chr4_3:58830651-58830670 Msa0651450:intron 30.0%
!! CTCTCTTTATCTTTTGTTTG+TGG + chr4_3:58830891-58830910 Msa0651450:intron 30.0%
AATAAAACTATGATGTGTGG+AGG - chr4_3:58831011-58831030 None:intergenic 30.0%
!!! TCCACACATCATAGTTTTAT+TGG + chr4_3:58831010-58831029 Msa0651450:intron 30.0%
ACCAATAAAACTATGATGTG+TGG - chr4_3:58831014-58831033 None:intergenic 30.0%
AATCACAAAATTCATGACAG+GGG + chr4_3:58831456-58831475 Msa0651450:intron 30.0%
AGCTGATGCATCAAAAATTT+GGG - chr4_3:58831537-58831556 None:intergenic 30.0%
AAATGAACCATATACAGTAG+AGG - chr4_3:58831775-58831794 None:intergenic 30.0%
! GTATATGGTTCATTTTCACA+AGG + chr4_3:58831780-58831799 Msa0651450:CDS 30.0%
ACATATTCAACATGACATTG+TGG + chr4_3:58831920-58831939 Msa0651450:CDS 30.0%
CATATTCAACATGACATTGT+GGG + chr4_3:58831921-58831940 Msa0651450:CDS 30.0%
TGGTCAAGATCCTAATCTAT+AGG - chr4_3:58828619-58828638 None:intergenic 35.0%
! GCTTTTGCAGTAAATTGTGA+AGG - chr4_3:58828681-58828700 None:intergenic 35.0%
CATCACTATGGGCATTATAT+TGG - chr4_3:58828762-58828781 None:intergenic 35.0%
!! TTTTGTTGTAAGCAGGATAG+AGG + chr4_3:58828791-58828810 Msa0651450:intron 35.0%
TACTTATCTCTTTCTTGGTC+AGG - chr4_3:58828843-58828862 None:intergenic 35.0%
! GATTTCTGAGAGTATACCTT+CGG - chr4_3:58829003-58829022 None:intergenic 35.0%
TGAAGAAGGAACAGAAGAAT+GGG - chr4_3:58829048-58829067 None:intergenic 35.0%
ATGAAGAAGGAACAGAAGAA+TGG - chr4_3:58829049-58829068 None:intergenic 35.0%
TACGAACTTGGACATATGAA+GGG - chr4_3:58829537-58829556 None:intergenic 35.0%
TTACGAACTTGGACATATGA+AGG - chr4_3:58829538-58829557 None:intergenic 35.0%
TCTACTGCTTCAATCAAGTT+CGG + chr4_3:58829666-58829685 Msa0651450:intron 35.0%
ACAACAACTTCAAATGGTAG+AGG + chr4_3:58829877-58829896 Msa0651450:CDS 35.0%
AAATGGTAGAGGAGCAAATA+AGG + chr4_3:58829888-58829907 Msa0651450:CDS 35.0%
AATTGTTCTAATGTTTGGGG+TGG + chr4_3:58829986-58830005 Msa0651450:intron 35.0%
! AGATGTCATCTTTAATGGGT+CGG - chr4_3:58830033-58830052 None:intergenic 35.0%
!! TGGTCCGATTTGGTAAAATT+GGG + chr4_3:58830366-58830385 Msa0651450:intron 35.0%
! AGACCCCAATTTTACCAAAT+CGG - chr4_3:58830373-58830392 None:intergenic 35.0%
TAAAATTGGGGTCTGATTCT+TGG + chr4_3:58830379-58830398 Msa0651450:intron 35.0%
! AAGTCTGAAACACCAAAACT+GGG - chr4_3:58830405-58830424 None:intergenic 35.0%
! AAAGTCTGAAACACCAAAAC+TGG - chr4_3:58830406-58830425 None:intergenic 35.0%
!!! CGAGTTTTGAGCACTATAAA+AGG + chr4_3:58830510-58830529 Msa0651450:intron 35.0%
!!! CATTCTTCATGTTTTGAGAG+GGG + chr4_3:58830536-58830555 Msa0651450:intron 35.0%
TCTTTGATTAGGGTTTCTTG+AGG + chr4_3:58830612-58830631 Msa0651450:intron 35.0%
CTTTGATTAGGGTTTCTTGA+GGG + chr4_3:58830613-58830632 Msa0651450:intron 35.0%
GGAAACATTTGTAAACACCT+TGG + chr4_3:58830650-58830669 Msa0651450:intron 35.0%
! TCATTGAGTGTCTTGTTCAT+TGG + chr4_3:58830684-58830703 Msa0651450:intron 35.0%
TCTTGTTCATTGGTGAGATT+AGG + chr4_3:58830694-58830713 Msa0651450:intron 35.0%
ATCAATCTCTCCCTTAAAGT+TGG + chr4_3:58830818-58830837 Msa0651450:intron 35.0%
TCCAACTTGACCAACTTTAA+GGG - chr4_3:58830831-58830850 None:intergenic 35.0%
CAAGAAATGTTTACCCAGTT+CGG - chr4_3:58830854-58830873 None:intergenic 35.0%
! GTTATTGTTGTTGTTGCTTC+TGG + chr4_3:58830955-58830974 Msa0651450:intron 35.0%
! ATGCATCAAAAATTTGGGGT+TGG - chr4_3:58831532-58831551 None:intergenic 35.0%
GCTGATGCATCAAAAATTTG+GGG - chr4_3:58831536-58831555 None:intergenic 35.0%
GAGCTGATGCATCAAAAATT+TGG - chr4_3:58831538-58831557 None:intergenic 35.0%
TGAAGAAATTGAAACCTGAG+AGG - chr4_3:58831569-58831588 None:intergenic 35.0%
GATTTGTCCTCTACTGTATA+TGG + chr4_3:58831765-58831784 Msa0651450:CDS 35.0%
GGATATAATGTGTATCCTTG+AGG - chr4_3:58831888-58831907 None:intergenic 35.0%
TGAATATGTTGCTGATGTTG+AGG - chr4_3:58831909-58831928 None:intergenic 35.0%
ATCCAAGATATGATGCTACA+TGG + chr4_3:58831969-58831988 Msa0651450:CDS 35.0%
!! TCTGTTGAATCATTTTTGGG+AGG - chr4_3:58832032-58832051 None:intergenic 35.0%
TCAAAAACAATCAGGCCTTG+AGG - chr4_3:58828390-58828409 None:intergenic 40.0%
TCTCAGAAATCCTCTTCTCT+CGG + chr4_3:58829012-58829031 Msa0651450:intron 40.0%
! GCATTTTGCAGTATTTGCTC+AGG + chr4_3:58829477-58829496 Msa0651450:CDS 40.0%
CTACTGCTTCAATCAAGTTC+GGG + chr4_3:58829667-58829686 Msa0651450:intron 40.0%
!! AGACATTAACTCTGAGGTTG+AGG + chr4_3:58829690-58829709 Msa0651450:CDS 40.0%
! GATGTCATCTTTAATGGGTC+GGG - chr4_3:58830032-58830051 None:intergenic 40.0%
TCTATAGCAGAGCTTGAAAC+CGG + chr4_3:58830050-58830069 Msa0651450:CDS 40.0%
GCATGTTTATTCATGGTTGC+AGG + chr4_3:58830225-58830244 Msa0651450:intron 40.0%
GTATGATCCATCAGCTATTC+AGG + chr4_3:58830276-58830295 Msa0651450:intron 40.0%
TTGGATTGCAGCAAAAATCG+TGG + chr4_3:58830346-58830365 Msa0651450:intron 40.0%
!! GTGGTCCGATTTGGTAAAAT+TGG + chr4_3:58830365-58830384 Msa0651450:intron 40.0%
!! GGTCCGATTTGGTAAAATTG+GGG + chr4_3:58830367-58830386 Msa0651450:intron 40.0%
!! GGACCCGATTTTGACATATA+AGG + chr4_3:58830443-58830462 Msa0651450:intron 40.0%
GTTTCTTGAGGGATTCTCTT+GGG + chr4_3:58830624-58830643 Msa0651450:intron 40.0%
! CAATGATTTTCACTCACCCA+AGG - chr4_3:58830670-58830689 None:intergenic 40.0%
! TCCCTTAAAGTTGGTCAAGT+TGG + chr4_3:58830827-58830846 Msa0651450:intron 40.0%
GTCCAACTTGACCAACTTTA+AGG - chr4_3:58830832-58830851 None:intergenic 40.0%
CGAACTGGGTAAACATTTCT+TGG + chr4_3:58830852-58830871 Msa0651450:intron 40.0%
CTAACATTCTCGAAAGAGGT+CGG - chr4_3:58831485-58831504 None:intergenic 40.0%
CCAACTAACATTCTCGAAAG+AGG - chr4_3:58831489-58831508 None:intergenic 40.0%
CCTCTTTCGAGAATGTTAGT+TGG + chr4_3:58831486-58831505 Msa0651450:CDS 40.0%
AATGTTAGTTGGCTGCAAGA+TGG + chr4_3:58831497-58831516 Msa0651450:CDS 40.0%
! TTTTGATGCATCAGCTCCTA+TGG + chr4_3:58831541-58831560 Msa0651450:CDS 40.0%
TCAAATGTTGTTGATCCACG+AGG + chr4_3:58831810-58831829 Msa0651450:CDS 40.0%
GCTTGAATGTTTCCATCGTT+TGG - chr4_3:58831861-58831880 None:intergenic 40.0%
GTCCATGTAGCATCATATCT+TGG - chr4_3:58831974-58831993 None:intergenic 40.0%
TTATGCCTCTTCTCTCCTCA+AGG + chr4_3:58828372-58828391 Msa0651450:intron 45.0%
! TACAATGGTTTGTGGCTCGT+TGG + chr4_3:58828486-58828505 Msa0651450:intron 45.0%
! ACAATGGTTTGTGGCTCGTT+GGG + chr4_3:58828487-58828506 Msa0651450:intron 45.0%
! CTGAGAGTATACCTTCGGTA+GGG - chr4_3:58828998-58829017 None:intergenic 45.0%
! TCTGAGAGTATACCTTCGGT+AGG - chr4_3:58828999-58829018 None:intergenic 45.0%
ACAGAAGAATGGGTGAGAGA+AGG - chr4_3:58829038-58829057 None:intergenic 45.0%
TCAGGATACTTCAGCAGTTG+AGG + chr4_3:58829495-58829514 Msa0651450:CDS 45.0%
TTCGGGAGACATTAACTCTG+AGG + chr4_3:58829684-58829703 Msa0651450:CDS 45.0%
! TGTTTGGGGTGGATAAACAC+AGG + chr4_3:58829997-58830016 Msa0651450:intron 45.0%
GCAAAAATCGTGGTCCGATT+TGG + chr4_3:58830356-58830375 Msa0651450:intron 45.0%
! TCTGATTCTTGGCCCAGTTT+TGG + chr4_3:58830390-58830409 Msa0651450:intron 45.0%
!! AGGAGGTAACTTTAGGGTTG+AGG + chr4_3:58830588-58830607 Msa0651450:intron 45.0%
!! GGAGGTAACTTTAGGGTTGA+GGG + chr4_3:58830589-58830608 Msa0651450:intron 45.0%
AGGGTTGAGGGTCTTTGATT+AGG + chr4_3:58830601-58830620 Msa0651450:intron 45.0%
GGGTTGAGGGTCTTTGATTA+GGG + chr4_3:58830602-58830621 Msa0651450:intron 45.0%
GGTTTCTTGAGGGATTCTCT+TGG + chr4_3:58830623-58830642 Msa0651450:intron 45.0%
TTGAGGGATTCTCTTGGGTT+GGG + chr4_3:58830629-58830648 Msa0651450:intron 45.0%
TGAAACCTGAGAGGATCCAT+AGG - chr4_3:58831560-58831579 None:intergenic 45.0%
GTTGTTGATCCACGAGGTAT+AGG + chr4_3:58831816-58831835 Msa0651450:CDS 45.0%
ACGATGGAAACATTCAAGCG+TGG + chr4_3:58831862-58831881 Msa0651450:CDS 45.0%
TCAACTTGTGAGGCAGTGAT+TGG - chr4_3:58832008-58832027 None:intergenic 45.0%
TTTGGGAGGTTCAACTTGTG+AGG - chr4_3:58832018-58832037 None:intergenic 45.0%
CATGAAGCTGGTGATTAGGT+TGG - chr4_3:58832070-58832089 None:intergenic 45.0%
CAACCTAATCACCAGCTTCA+TGG + chr4_3:58832068-58832087 Msa0651450:CDS 45.0%
TGACCATGAAGCTGGTGATT+AGG - chr4_3:58832074-58832093 None:intergenic 45.0%
!! TTGCAGGGGTATTCAGAGCA+AGG + chr4_3:58829192-58829211 Msa0651450:intron 50.0%
AGAAACCTTGGCACGTGTCA+TGG + chr4_3:58830088-58830107 Msa0651450:CDS 50.0%
CTTGAGGGATTCTCTTGGGT+TGG + chr4_3:58830628-58830647 Msa0651450:intron 50.0%
!! TTGGTCAAGTTGGACCGAAC+TGG + chr4_3:58830837-58830856 Msa0651450:intron 50.0%
!! TGGTCAAGTTGGACCGAACT+GGG + chr4_3:58830838-58830857 Msa0651450:intron 50.0%
GTTAGTTGGCTGCAAGATGG+TGG + chr4_3:58831500-58831519 Msa0651450:CDS 50.0%
CATCGTTTGGATTTGCCACG+TGG - chr4_3:58831848-58831867 None:intergenic 50.0%
CACGTGGCAAATCCAAACGA+TGG + chr4_3:58831846-58831865 Msa0651450:CDS 50.0%
AACATTCAAGCGTGGCCTCA+AGG + chr4_3:58831870-58831889 Msa0651450:CDS 50.0%
TCAGGCCTTGAGGAGAGAAG+AGG - chr4_3:58828380-58828399 None:intergenic 55.0%
TTCCTGAGCTACCCTACCGA+AGG + chr4_3:58828984-58829003 Msa0651450:CDS 55.0%
TACCTTCGGTAGGGTAGCTC+AGG - chr4_3:58828989-58829008 None:intergenic 55.0%
TGAGAGAAGGCCGAGAGAAG+AGG - chr4_3:58829025-58829044 None:intergenic 55.0%
!! CAGGGGTATTCAGAGCAAGG+AGG + chr4_3:58829195-58829214 Msa0651450:intron 55.0%
TCTCTCCATGACACGTGCCA+AGG - chr4_3:58830096-58830115 None:intergenic 55.0%
GGCACGTGTCATGGAGAGAA+AGG + chr4_3:58830097-58830116 Msa0651450:CDS 55.0%
CAGCTCCTATGGATCCTCTC+AGG + chr4_3:58831552-58831571 Msa0651450:CDS 55.0%
TGGCACTCTCCTATACCTCG+TGG - chr4_3:58831828-58831847 None:intergenic 55.0%
!! AGGTATAGGAGAGTGCCACG+TGG + chr4_3:58831830-58831849 Msa0651450:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58828100 58832097 58828100 ID=Msa0651450;Name=Msa0651450
chr4_3 mRNA 58828100 58832097 58828100 ID=Msa0651450-mRNA-1;Parent=Msa0651450;Name=Msa0651450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0.87|0.88|9|0|324
chr4_3 exon 58828100 58828284 58828100 ID=Msa0651450-mRNA-1:exon:15648;Parent=Msa0651450-mRNA-1
chr4_3 exon 58828806 58828859 58828806 ID=Msa0651450-mRNA-1:exon:15649;Parent=Msa0651450-mRNA-1
chr4_3 exon 58828973 58829005 58828973 ID=Msa0651450-mRNA-1:exon:15650;Parent=Msa0651450-mRNA-1
chr4_3 exon 58829469 58829549 58829469 ID=Msa0651450-mRNA-1:exon:15651;Parent=Msa0651450-mRNA-1
chr4_3 exon 58829684 58829711 58829684 ID=Msa0651450-mRNA-1:exon:15652;Parent=Msa0651450-mRNA-1
chr4_3 exon 58829848 58829909 58829848 ID=Msa0651450-mRNA-1:exon:15653;Parent=Msa0651450-mRNA-1
chr4_3 exon 58830019 58830118 58830019 ID=Msa0651450-mRNA-1:exon:15654;Parent=Msa0651450-mRNA-1
chr4_3 exon 58831476 58831573 58831476 ID=Msa0651450-mRNA-1:exon:15655;Parent=Msa0651450-mRNA-1
chr4_3 exon 58831764 58832097 58831764 ID=Msa0651450-mRNA-1:exon:15656;Parent=Msa0651450-mRNA-1
chr4_3 CDS 58828100 58828284 58828100 ID=Msa0651450-mRNA-1:cds;Parent=Msa0651450-mRNA-1
chr4_3 CDS 58828806 58828859 58828806 ID=Msa0651450-mRNA-1:cds;Parent=Msa0651450-mRNA-1
chr4_3 CDS 58828973 58829005 58828973 ID=Msa0651450-mRNA-1:cds;Parent=Msa0651450-mRNA-1
chr4_3 CDS 58829469 58829549 58829469 ID=Msa0651450-mRNA-1:cds;Parent=Msa0651450-mRNA-1
chr4_3 CDS 58829684 58829711 58829684 ID=Msa0651450-mRNA-1:cds;Parent=Msa0651450-mRNA-1
chr4_3 CDS 58829848 58829909 58829848 ID=Msa0651450-mRNA-1:cds;Parent=Msa0651450-mRNA-1
chr4_3 CDS 58830019 58830118 58830019 ID=Msa0651450-mRNA-1:cds;Parent=Msa0651450-mRNA-1
chr4_3 CDS 58831476 58831573 58831476 ID=Msa0651450-mRNA-1:cds;Parent=Msa0651450-mRNA-1
chr4_3 CDS 58831764 58832097 58831764 ID=Msa0651450-mRNA-1:cds;Parent=Msa0651450-mRNA-1
Gene Sequence

>Msa0651450

ATGGGTCGTGTTAAACTTGAGATAAAAAGAATAGAGAACACAGTGAATCGACAAGTTACATATTCAAAACGTAGAAATGGTCTCATTAAGAAAGCTTATGAGTTATCAATCCTTTGTGATATTGATATTGCTCTTATAATGTTTTCTCCATCAAATCGTCTTAATCATTTTTCAGGTAAAAGAAGGATAGAGGATGTTTTAACTCGTTACATTAATATTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCTGAGCTACCCTACCGAAGTTTATATTGCATTTTGCAGTATTTGCTCAGGATACTTCAGCAGTTGAGGAATGAAAATGACATAGCCCTTCATATGTCCAATTCGGGAGACATTAACTCTGAGGTTGAGGATCTCCAACAAGAAGTTAGTAGATTACAACAACAACTTCAAATGGTAGAGGAGCAAATAAGGAAATATGAACCCGACCCATTAAAGATGACATCTATAGCAGAGCTTGAAACCGGTGAAAAAAACGTAGTAGAAACCTTGGCACGTGTCATGGAGAGAAAGGGGATGCCGACCTCTTTCGAGAATGTTAGTTGGCTGCAAGATGGTGGTCAGAACCAACCCCAAATTTTTGATGCATCAGCTCCTATGGATCCTCTCAGGGATTTGTCCTCTACTGTATATGGTTCATTTTCACAAGGGACGAGTTCAAATGTTGTTGATCCACGAGGTATAGGAGAGTGCCACGTGGCAAATCCAAACGATGGAAACATTCAAGCGTGGCCTCAAGGATACACATTATATCCTCAACATCAGCAACATATTCAACATGACATTGTGGGAACTGATCATCATCATCATCACAACATCCAAGATATGATGCTACATGGACAAATGAACATGCCAATCACTGCCTCACAAGTTGAACCTCCCAAAAATGATTCAACAGAATATGATCAATGTAACCAACCTAATCACCAGCTTCATGGTCAATGA
Protein sequence

>Msa0651450

MGRVKLEIKRIENTVNRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLNHFSGKRRIEDVLTRYINIPDQERDNAVSFPELPYRSLYCILQYLLRILQQLRNENDIALHMSNSGDINSEVEDLQQEVSRLQQQLQMVEEQIRKYEPDPLKMTSIAELETGEKNVVETLARVMERKGMPTSFENVSWLQDGGQNQPQIFDASAPMDPLRDLSSTVYGSFSQGTSSNVVDPRGIGECHVANPNDGNIQAWPQGYTLYPQHQQHIQHDIVGTDHHHHHNIQDMMLHGQMNMPITASQVEPPKNDSTEYDQCNQPNHQLHGQ*