Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651500 | XP_003607938.1 | 91.475 | 305 | 22 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651500 | sp|Q9FXA3|BH095_ARATH | 43.056 | 216 | 85 | 5 | 88 | 275 | 70 | 275 | 9.02e-41 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651500 | G7JK25 | 91.475 | 305 | 22 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0651500 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651500 | MtrunA17_Chr4g0044621 | 91.475 | 305 | 22 | 2 | 1 | 301 | 1 | 305 | 0.0 | 523 |
| Msa0651500 | MtrunA17_Chr4g0044611 | 88.889 | 279 | 26 | 3 | 1 | 275 | 1 | 278 | 6.24e-165 | 460 |
| Msa0651500 | MtrunA17_Chr4g0042511 | 43.841 | 276 | 121 | 6 | 1 | 275 | 1 | 243 | 1.01e-50 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651500 | AT1G49770.1 | 43.056 | 216 | 85 | 5 | 88 | 275 | 70 | 275 | 9.17e-42 | 146 |
Find 61 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATTGATTCCTTCTTTC+TGG | 0.014189 | 4_3:+58942246 | None:intergenic |
| GCTTCCTGAACTTCCTTCTA+AGG | 0.247562 | 4_3:-58942042 | Msa0651500:intron |
| CCTAAGTTATGATTAGAGTT+TGG | 0.258500 | 4_3:+58942305 | None:intergenic |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4_3:+58940681 | None:intergenic |
| TGGAAACTTCTACATGATTA+TGG | 0.312756 | 4_3:-58940398 | Msa0651500:CDS |
| CTAAGTTATGATTAGAGTTT+GGG | 0.313394 | 4_3:+58942306 | None:intergenic |
| AAATGAATTTATACCTTAGA+AGG | 0.315805 | 4_3:+58942029 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.328467 | 4_3:+58942254 | None:intergenic |
| ATGTTCAAACAAATTTCATT+TGG | 0.345668 | 4_3:-58942352 | Msa0651500:CDS |
| TGTTCAAACAAATTTCATTT+GGG | 0.373120 | 4_3:-58942351 | Msa0651500:CDS |
| TATACCTTAGAAGGAAGTTC+AGG | 0.398193 | 4_3:+58942038 | None:intergenic |
| TCTCTTGACCACAATTGCTT+TGG | 0.400979 | 4_3:-58940476 | Msa0651500:CDS |
| GACCACAATTGCTTTGGTGC+TGG | 0.421423 | 4_3:-58940470 | Msa0651500:CDS |
| CCGATTTCTCTTCTTGCTCA+CGG | 0.425778 | 4_3:+58942214 | None:intergenic |
| CCGTGAGCAAGAAGAGAAAT+CGG | 0.430632 | 4_3:-58942214 | Msa0651500:CDS |
| CGATTTCTCTTCTTGCTCAC+GGG | 0.436559 | 4_3:+58942215 | None:intergenic |
| AACATTATGTGCAATGCAAA+TGG | 0.441341 | 4_3:-58940418 | Msa0651500:CDS |
| AGTGAGAATAATATTGCAAC+TGG | 0.447083 | 4_3:-58942173 | Msa0651500:CDS |
| CTCAAATCTGTATCCCCACT+TGG | 0.456632 | 4_3:-58940739 | Msa0651500:CDS |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4_3:-58942091 | Msa0651500:CDS |
| CGTGAGCAAGAAGAGAAATC+GGG | 0.482173 | 4_3:-58942213 | Msa0651500:CDS |
| AGGTGAGAGTAGCAAACAAT+TGG | 0.494891 | 4_3:-58942285 | Msa0651500:CDS |
| CTCCAGCACCAAAGCAATTG+TGG | 0.505022 | 4_3:+58940468 | None:intergenic |
| ATTTGCATTGCACATAATGT+TGG | 0.516349 | 4_3:+58940420 | None:intergenic |
| CCAAACTCTAATCATAACTT+AGG | 0.519326 | 4_3:-58942305 | Msa0651500:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4_3:+58940682 | None:intergenic |
| TCATTTGGGAAAATCATCCA+TGG | 0.525272 | 4_3:-58942337 | Msa0651500:CDS |
| CAGAAAGAAGGAATCAATGA+AGG | 0.527899 | 4_3:-58942245 | Msa0651500:CDS |
| CAAGTTATTATTATAACTTG+TGG | 0.529171 | 4_3:+58940642 | None:intergenic |
| AAACCTACATGTTGTGGTGG+AGG | 0.530627 | 4_3:+58940583 | None:intergenic |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4_3:-58940690 | Msa0651500:CDS |
| CATTTGGGAAAATCATCCAT+GGG | 0.537456 | 4_3:-58942336 | Msa0651500:CDS |
| ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4_3:-58940499 | Msa0651500:CDS |
| CAGGCAAAACAAGCTTCACA+TGG | 0.544546 | 4_3:-58940248 | Msa0651500:CDS |
| CAAGAAGAGAAATCGGGGTG+GGG | 0.550377 | 4_3:-58942207 | Msa0651500:CDS |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4_3:-58940667 | Msa0651500:CDS |
| GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4_3:+58942054 | None:intergenic |
| AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4_3:+58942046 | None:intergenic |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4_3:-58942106 | Msa0651500:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4_3:-58942257 | Msa0651500:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4_3:+58940481 | None:intergenic |
| GCAAGAAGAGAAATCGGGGT+GGG | 0.581863 | 4_3:-58942208 | Msa0651500:CDS |
| TTGATCATGATCTACACTCA+TGG | 0.585566 | 4_3:+58942376 | None:intergenic |
| TTCACATGGCGCAAACTCGA+TGG | 0.594689 | 4_3:-58940234 | Msa0651500:CDS |
| TTACCTCCACCACAACATGT+AGG | 0.611747 | 4_3:-58940586 | Msa0651500:CDS |
| CTTCACTGCTGCATCCACAA+TGG | 0.612064 | 4_3:+58940819 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4_3:-58940689 | Msa0651500:CDS |
| CAGATGACTCACTCCCAAGT+GGG | 0.617234 | 4_3:+58940725 | None:intergenic |
| TCAAATCTGTATCCCCACTT+GGG | 0.618216 | 4_3:-58940738 | Msa0651500:CDS |
| GGCTGATAAATCAACCATTG+TGG | 0.629857 | 4_3:-58940833 | Msa0651500:CDS |
| ACATGGCGCAAACTCGATGG+AGG | 0.652836 | 4_3:-58940231 | Msa0651500:CDS |
| TTAAAACCTACATGTTGTGG+TGG | 0.654855 | 4_3:+58940580 | None:intergenic |
| AATGTTGTACTGAACATATG+TGG | 0.655921 | 4_3:-58940541 | Msa0651500:CDS |
| CAGCTTTAGAAGTTATGACG+CGG | 0.659283 | 4_3:-58940193 | Msa0651500:CDS |
| GAGTTTGGGAGATCATCCCA+TGG | 0.666665 | 4_3:+58942320 | None:intergenic |
| ACAGATGACTCACTCCCAAG+TGG | 0.673465 | 4_3:+58940724 | None:intergenic |
| AGATGACTCACTCCCAAGTG+GGG | 0.684740 | 4_3:+58940726 | None:intergenic |
| GTGAGCAAGAAGAGAAATCG+GGG | 0.694598 | 4_3:-58942212 | Msa0651500:CDS |
| AGCAAGAAGAGAAATCGGGG+TGG | 0.706863 | 4_3:-58942209 | Msa0651500:CDS |
| GTTGTACTGAACATATGTGG+TGG | 0.767818 | 4_3:-58940538 | Msa0651500:CDS |
| CATCTGTGATCAACTCACAG+TGG | 0.777919 | 4_3:-58940708 | Msa0651500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTTGATAAACTTTAA+GGG | + | chr4_3:58940641-58940660 | None:intergenic | 15.0% |
| !!! | TATGATTTTGATAAACTTTA+AGG | + | chr4_3:58940642-58940661 | None:intergenic | 15.0% |
| !! | ATTAATTAGTTCAATAATCA+AGG | + | chr4_3:58941017-58941036 | None:intergenic | 15.0% |
| !!! | TTGATAGTATTCATTTATTT+AGG | - | chr4_3:58941391-58941410 | Msa0651500:intron | 15.0% |
| !! | TGATAGTATTCATTTATTTA+GGG | - | chr4_3:58941392-58941411 | Msa0651500:intron | 15.0% |
| !!! | ACTGAAATAAATAATTTTCT+TGG | - | chr4_3:58941594-58941613 | Msa0651500:intron | 15.0% |
| !!! | ATTTGATTTTGATATTTTAC+AGG | - | chr4_3:58941710-58941729 | Msa0651500:intron | 15.0% |
| !! | TAAAAATCTTGAAGAAATTA+AGG | - | chr4_3:58941773-58941792 | Msa0651500:intron | 15.0% |
| !! | GATATTAAAAAATGATAAAG+AGG | + | chr4_3:58942217-58942236 | None:intergenic | 15.0% |
| !!! | ATGATTTTGATAAACTTTAA+GGG | + | chr4_3:58940641-58940660 | None:intergenic | 15.0% |
| !!! | TATGATTTTGATAAACTTTA+AGG | + | chr4_3:58940642-58940661 | None:intergenic | 15.0% |
| !! | ATTAATTAGTTCAATAATCA+AGG | + | chr4_3:58941017-58941036 | None:intergenic | 15.0% |
| !!! | TTGATAGTATTCATTTATTT+AGG | - | chr4_3:58941391-58941410 | Msa0651500:intron | 15.0% |
| !! | TGATAGTATTCATTTATTTA+GGG | - | chr4_3:58941392-58941411 | Msa0651500:intron | 15.0% |
| !!! | ACTGAAATAAATAATTTTCT+TGG | - | chr4_3:58941594-58941613 | Msa0651500:intron | 15.0% |
| !!! | ATTTGATTTTGATATTTTAC+AGG | - | chr4_3:58941710-58941729 | Msa0651500:intron | 15.0% |
| !! | TAAAAATCTTGAAGAAATTA+AGG | - | chr4_3:58941773-58941792 | Msa0651500:intron | 15.0% |
| !! | GATATTAAAAAATGATAAAG+AGG | + | chr4_3:58942217-58942236 | None:intergenic | 15.0% |
| !! | ATGTTCAAACAAATTTCATT+TGG | - | chr4_3:58940212-58940231 | Msa0651500:CDS | 20.0% |
| !! | TGTTCAAACAAATTTCATTT+GGG | - | chr4_3:58940213-58940232 | Msa0651500:CDS | 20.0% |
| !! | AAATGAATTTATACCTTAGA+AGG | + | chr4_3:58940538-58940557 | None:intergenic | 20.0% |
| !!! | TGATTTTGATAAACTTTAAG+GGG | + | chr4_3:58940640-58940659 | None:intergenic | 20.0% |
| !! | GCAAATACAAAAATGTATTT+AGG | - | chr4_3:58940703-58940722 | Msa0651500:CDS | 20.0% |
| !! | AGTGAACACAATAAAAAAAA+TGG | - | chr4_3:58941314-58941333 | Msa0651500:intron | 20.0% |
| !!! | GAAATAAATAATTTTCTTGG+AGG | - | chr4_3:58941597-58941616 | Msa0651500:intron | 20.0% |
| !! | CTACAATTACTTATTTACTA+AGG | - | chr4_3:58941677-58941696 | Msa0651500:intron | 20.0% |
| !! | CAAGTTATTATTATAACTTG+TGG | + | chr4_3:58941925-58941944 | None:intergenic | 20.0% |
| !! | ATGTTCAAACAAATTTCATT+TGG | - | chr4_3:58940212-58940231 | Msa0651500:CDS | 20.0% |
| !! | TGTTCAAACAAATTTCATTT+GGG | - | chr4_3:58940213-58940232 | Msa0651500:CDS | 20.0% |
| !! | AAATGAATTTATACCTTAGA+AGG | + | chr4_3:58940538-58940557 | None:intergenic | 20.0% |
| !!! | TGATTTTGATAAACTTTAAG+GGG | + | chr4_3:58940640-58940659 | None:intergenic | 20.0% |
| !! | GCAAATACAAAAATGTATTT+AGG | - | chr4_3:58940703-58940722 | Msa0651500:CDS | 20.0% |
| !! | AGTGAACACAATAAAAAAAA+TGG | - | chr4_3:58941314-58941333 | Msa0651500:intron | 20.0% |
| !!! | GAAATAAATAATTTTCTTGG+AGG | - | chr4_3:58941597-58941616 | Msa0651500:intron | 20.0% |
| !! | CTACAATTACTTATTTACTA+AGG | - | chr4_3:58941677-58941696 | Msa0651500:intron | 20.0% |
| !! | CAAGTTATTATTATAACTTG+TGG | + | chr4_3:58941925-58941944 | None:intergenic | 20.0% |
| ! | CTAAGTTATGATTAGAGTTT+GGG | + | chr4_3:58940261-58940280 | None:intergenic | 25.0% |
| !! | TTTCTATATCTTTTCCGATT+TGG | - | chr4_3:58940681-58940700 | Msa0651500:CDS | 25.0% |
| !! | CATTTTTGTATTTGCCAAAT+CGG | + | chr4_3:58940698-58940717 | None:intergenic | 25.0% |
| ! | GGTAAAATTATACTTACTTC+AGG | + | chr4_3:58941080-58941099 | None:intergenic | 25.0% |
| ! | TCATATTGTAACTCAATTGT+TGG | + | chr4_3:58941229-58941248 | None:intergenic | 25.0% |
| ! | CAATTGTCAGTTAAATCTTA+CGG | - | chr4_3:58941265-58941284 | Msa0651500:intron | 25.0% |
| !!! | CTTTTCAAGTGAGAATATAA+TGG | + | chr4_3:58941340-58941359 | None:intergenic | 25.0% |
| !!! | CCATTGACTTAAATTTTCTT+AGG | + | chr4_3:58941541-58941560 | None:intergenic | 25.0% |
| ! | CCTAAGAAAATTTAAGTCAA+TGG | - | chr4_3:58941538-58941557 | Msa0651500:intron | 25.0% |
| ! | AAAATTTAAGTCAATGGCAT+TGG | - | chr4_3:58941544-58941563 | Msa0651500:intron | 25.0% |
| !!! | AACATGTAGGTTTTAAAACA+TGG | - | chr4_3:58941991-58942010 | Msa0651500:intron | 25.0% |
| ! | CTAAGTTATGATTAGAGTTT+GGG | + | chr4_3:58940261-58940280 | None:intergenic | 25.0% |
| !! | TTTCTATATCTTTTCCGATT+TGG | - | chr4_3:58940681-58940700 | Msa0651500:CDS | 25.0% |
| !! | CATTTTTGTATTTGCCAAAT+CGG | + | chr4_3:58940698-58940717 | None:intergenic | 25.0% |
| ! | GGTAAAATTATACTTACTTC+AGG | + | chr4_3:58941080-58941099 | None:intergenic | 25.0% |
| ! | TCATATTGTAACTCAATTGT+TGG | + | chr4_3:58941229-58941248 | None:intergenic | 25.0% |
| ! | CAATTGTCAGTTAAATCTTA+CGG | - | chr4_3:58941265-58941284 | Msa0651500:intron | 25.0% |
| !!! | CTTTTCAAGTGAGAATATAA+TGG | + | chr4_3:58941340-58941359 | None:intergenic | 25.0% |
| !!! | CCATTGACTTAAATTTTCTT+AGG | + | chr4_3:58941541-58941560 | None:intergenic | 25.0% |
| ! | CCTAAGAAAATTTAAGTCAA+TGG | - | chr4_3:58941538-58941557 | Msa0651500:intron | 25.0% |
| ! | AAAATTTAAGTCAATGGCAT+TGG | - | chr4_3:58941544-58941563 | Msa0651500:intron | 25.0% |
| !!! | AACATGTAGGTTTTAAAACA+TGG | - | chr4_3:58941991-58942010 | Msa0651500:intron | 25.0% |
| CCTAAGTTATGATTAGAGTT+TGG | + | chr4_3:58940262-58940281 | None:intergenic | 30.0% | |
| CCAAACTCTAATCATAACTT+AGG | - | chr4_3:58940259-58940278 | Msa0651500:intron | 30.0% | |
| AGTGAGAATAATATTGCAAC+TGG | - | chr4_3:58940391-58940410 | Msa0651500:intron | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4_3:58940458-58940477 | Msa0651500:CDS | 30.0% |
| ! | GATAAACTTTAAGGGGAAAA+AGG | + | chr4_3:58940633-58940652 | None:intergenic | 30.0% |
| !!! | TTTTTTTAGCCTGATCAAGA+AGG | + | chr4_3:58940772-58940791 | None:intergenic | 30.0% |
| AAACAACACTCATATAAGCT+AGG | - | chr4_3:58940798-58940817 | Msa0651500:CDS | 30.0% | |
| AACAACACTCATATAAGCTA+GGG | - | chr4_3:58940799-58940818 | Msa0651500:CDS | 30.0% | |
| TCCAAGTTTGACATTGTATA+CGG | + | chr4_3:58940963-58940982 | None:intergenic | 30.0% | |
| AATAAAGACTTCAAGTCCAT+GGG | + | chr4_3:58941437-58941456 | None:intergenic | 30.0% | |
| AAATAAAGACTTCAAGTCCA+TGG | + | chr4_3:58941438-58941457 | None:intergenic | 30.0% | |
| !!! | GTTTTAAAACCTACATGTTG+TGG | + | chr4_3:58941990-58942009 | None:intergenic | 30.0% |
| AATGTTGTACTGAACATATG+TGG | - | chr4_3:58942023-58942042 | Msa0651500:intron | 30.0% | |
| ATTTGCATTGCACATAATGT+TGG | + | chr4_3:58942147-58942166 | None:intergenic | 30.0% | |
| AACATTATGTGCAATGCAAA+TGG | - | chr4_3:58942146-58942165 | Msa0651500:CDS | 30.0% | |
| TGGAAACTTCTACATGATTA+TGG | - | chr4_3:58942166-58942185 | Msa0651500:CDS | 30.0% | |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4_3:58942192-58942211 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4_3:58942209-58942228 | None:intergenic | 30.0% | |
| !!! | TTGAATTGTGTTGATTTTGC+AGG | - | chr4_3:58942297-58942316 | Msa0651500:CDS | 30.0% |
| CCTAAGTTATGATTAGAGTT+TGG | + | chr4_3:58940262-58940281 | None:intergenic | 30.0% | |
| CCAAACTCTAATCATAACTT+AGG | - | chr4_3:58940259-58940278 | Msa0651500:intron | 30.0% | |
| AGTGAGAATAATATTGCAAC+TGG | - | chr4_3:58940391-58940410 | Msa0651500:intron | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4_3:58940458-58940477 | Msa0651500:CDS | 30.0% |
| ! | GATAAACTTTAAGGGGAAAA+AGG | + | chr4_3:58940633-58940652 | None:intergenic | 30.0% |
| !!! | TTTTTTTAGCCTGATCAAGA+AGG | + | chr4_3:58940772-58940791 | None:intergenic | 30.0% |
| AAACAACACTCATATAAGCT+AGG | - | chr4_3:58940798-58940817 | Msa0651500:CDS | 30.0% | |
| AACAACACTCATATAAGCTA+GGG | - | chr4_3:58940799-58940818 | Msa0651500:CDS | 30.0% | |
| TCCAAGTTTGACATTGTATA+CGG | + | chr4_3:58940963-58940982 | None:intergenic | 30.0% | |
| AATAAAGACTTCAAGTCCAT+GGG | + | chr4_3:58941437-58941456 | None:intergenic | 30.0% | |
| AAATAAAGACTTCAAGTCCA+TGG | + | chr4_3:58941438-58941457 | None:intergenic | 30.0% | |
| !!! | GTTTTAAAACCTACATGTTG+TGG | + | chr4_3:58941990-58942009 | None:intergenic | 30.0% |
| AATGTTGTACTGAACATATG+TGG | - | chr4_3:58942023-58942042 | Msa0651500:intron | 30.0% | |
| ATTTGCATTGCACATAATGT+TGG | + | chr4_3:58942147-58942166 | None:intergenic | 30.0% | |
| AACATTATGTGCAATGCAAA+TGG | - | chr4_3:58942146-58942165 | Msa0651500:CDS | 30.0% | |
| TGGAAACTTCTACATGATTA+TGG | - | chr4_3:58942166-58942185 | Msa0651500:CDS | 30.0% | |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4_3:58942192-58942211 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4_3:58942209-58942228 | None:intergenic | 30.0% | |
| !!! | TTGAATTGTGTTGATTTTGC+AGG | - | chr4_3:58942297-58942316 | Msa0651500:CDS | 30.0% |
| TTGATCATGATCTACACTCA+TGG | + | chr4_3:58940191-58940210 | None:intergenic | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4_3:58940227-58940246 | Msa0651500:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4_3:58940228-58940247 | Msa0651500:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4_3:58940307-58940326 | Msa0651500:intron | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4_3:58940313-58940332 | None:intergenic | 35.0% |
| !! | CTTCATTGATTCCTTCTTTC+TGG | + | chr4_3:58940321-58940340 | None:intergenic | 35.0% |
| CAGAAAGAAGGAATCAATGA+AGG | - | chr4_3:58940319-58940338 | Msa0651500:intron | 35.0% | |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4_3:58940473-58940492 | Msa0651500:CDS | 35.0% | |
| TATACCTTAGAAGGAAGTTC+AGG | + | chr4_3:58940529-58940548 | None:intergenic | 35.0% | |
| TTTAAGAACCCTAGCTAGAT+GGG | + | chr4_3:58940874-58940893 | None:intergenic | 35.0% | |
| ATCTAGCTAGGGTTCTTAAA+GGG | - | chr4_3:58940874-58940893 | Msa0651500:intron | 35.0% | |
| TCCTTCTTGTTACCATAGAT+AGG | - | chr4_3:58940929-58940948 | Msa0651500:intron | 35.0% | |
| CCTTCTTGTTACCATAGATA+GGG | - | chr4_3:58940930-58940949 | Msa0651500:intron | 35.0% | |
| CCAAGTTTGACATTGTATAC+GGG | + | chr4_3:58940962-58940981 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTCAACCTCAGTT+CGG | - | chr4_3:58941053-58941072 | Msa0651500:intron | 35.0% |
| TACCAAAAATCGATCCATTC+AGG | - | chr4_3:58941096-58941115 | Msa0651500:intron | 35.0% | |
| !! | TTCCTGAATGGATCGATTTT+TGG | + | chr4_3:58941101-58941120 | None:intergenic | 35.0% |
| AAAATCGATCCATTCAGGAA+TGG | - | chr4_3:58941101-58941120 | Msa0651500:intron | 35.0% | |
| GTGGTTAATGAATTCCACAA+AGG | + | chr4_3:58941153-58941172 | None:intergenic | 35.0% | |
| ACCACTTAAGCTCAATTGTT+TGG | - | chr4_3:58941168-58941187 | Msa0651500:intron | 35.0% | |
| ACCAAACAATTGAGCTTAAG+TGG | + | chr4_3:58941172-58941191 | None:intergenic | 35.0% | |
| TCAGTTAAATCTTACGGTTG+AGG | - | chr4_3:58941271-58941290 | Msa0651500:intron | 35.0% | |
| ! | ATTTAAGTCAATGGCATTGG+TGG | - | chr4_3:58941547-58941566 | Msa0651500:intron | 35.0% |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4_3:58941885-58941904 | None:intergenic | 35.0% | |
| TTAAAACCTACATGTTGTGG+TGG | + | chr4_3:58941987-58942006 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4_3:58942193-58942212 | None:intergenic | 35.0% |
| TTGATCATGATCTACACTCA+TGG | + | chr4_3:58940191-58940210 | None:intergenic | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4_3:58940227-58940246 | Msa0651500:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4_3:58940228-58940247 | Msa0651500:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4_3:58940307-58940326 | Msa0651500:intron | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4_3:58940313-58940332 | None:intergenic | 35.0% |
| !! | CTTCATTGATTCCTTCTTTC+TGG | + | chr4_3:58940321-58940340 | None:intergenic | 35.0% |
| CAGAAAGAAGGAATCAATGA+AGG | - | chr4_3:58940319-58940338 | Msa0651500:intron | 35.0% | |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4_3:58940473-58940492 | Msa0651500:CDS | 35.0% | |
| TATACCTTAGAAGGAAGTTC+AGG | + | chr4_3:58940529-58940548 | None:intergenic | 35.0% | |
| TTTAAGAACCCTAGCTAGAT+GGG | + | chr4_3:58940874-58940893 | None:intergenic | 35.0% | |
| ATCTAGCTAGGGTTCTTAAA+GGG | - | chr4_3:58940874-58940893 | Msa0651500:intron | 35.0% | |
| TCCTTCTTGTTACCATAGAT+AGG | - | chr4_3:58940929-58940948 | Msa0651500:intron | 35.0% | |
| CCTTCTTGTTACCATAGATA+GGG | - | chr4_3:58940930-58940949 | Msa0651500:intron | 35.0% | |
| CCAAGTTTGACATTGTATAC+GGG | + | chr4_3:58940962-58940981 | None:intergenic | 35.0% | |
| ! | TTTTTGTGTCAACCTCAGTT+CGG | - | chr4_3:58941053-58941072 | Msa0651500:intron | 35.0% |
| TACCAAAAATCGATCCATTC+AGG | - | chr4_3:58941096-58941115 | Msa0651500:intron | 35.0% | |
| !! | TTCCTGAATGGATCGATTTT+TGG | + | chr4_3:58941101-58941120 | None:intergenic | 35.0% |
| AAAATCGATCCATTCAGGAA+TGG | - | chr4_3:58941101-58941120 | Msa0651500:intron | 35.0% | |
| GTGGTTAATGAATTCCACAA+AGG | + | chr4_3:58941153-58941172 | None:intergenic | 35.0% | |
| ACCACTTAAGCTCAATTGTT+TGG | - | chr4_3:58941168-58941187 | Msa0651500:intron | 35.0% | |
| ACCAAACAATTGAGCTTAAG+TGG | + | chr4_3:58941172-58941191 | None:intergenic | 35.0% | |
| TCAGTTAAATCTTACGGTTG+AGG | - | chr4_3:58941271-58941290 | Msa0651500:intron | 35.0% | |
| ! | ATTTAAGTCAATGGCATTGG+TGG | - | chr4_3:58941547-58941566 | Msa0651500:intron | 35.0% |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4_3:58941885-58941904 | None:intergenic | 35.0% | |
| TTAAAACCTACATGTTGTGG+TGG | + | chr4_3:58941987-58942006 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4_3:58942193-58942212 | None:intergenic | 35.0% |
| AGGTGAGAGTAGCAAACAAT+TGG | - | chr4_3:58940279-58940298 | Msa0651500:intron | 40.0% | |
| GAACTTTCTCCTTCTTGATC+AGG | - | chr4_3:58940760-58940779 | Msa0651500:CDS | 40.0% | |
| TTAAGAACCCTAGCTAGATG+GGG | + | chr4_3:58940873-58940892 | None:intergenic | 40.0% | |
| ! | CTTTAAGAACCCTAGCTAGA+TGG | + | chr4_3:58940875-58940894 | None:intergenic | 40.0% |
| CATCTAGCTAGGGTTCTTAA+AGG | - | chr4_3:58940873-58940892 | Msa0651500:intron | 40.0% | |
| TCTAGCTAGGGTTCTTAAAG+GGG | - | chr4_3:58940875-58940894 | Msa0651500:intron | 40.0% | |
| AAAGGGGCAATAGATCTACT+AGG | - | chr4_3:58940891-58940910 | Msa0651500:intron | 40.0% | |
| AAGGGGCAATAGATCTACTA+GGG | - | chr4_3:58940892-58940911 | Msa0651500:intron | 40.0% | |
| CCCTATCTATGGTAACAAGA+AGG | + | chr4_3:58940933-58940952 | None:intergenic | 40.0% | |
| TGTTACCATAGATAGGGATC+TGG | - | chr4_3:58940936-58940955 | Msa0651500:intron | 40.0% | |
| CCCGTATACAATGTCAAACT+TGG | - | chr4_3:58940959-58940978 | Msa0651500:intron | 40.0% | |
| TCCATTCAGGAATGGAATTC+AGG | - | chr4_3:58941109-58941128 | Msa0651500:intron | 40.0% | |
| ACCTGAATTCCATTCCTGAA+TGG | + | chr4_3:58941113-58941132 | None:intergenic | 40.0% | |
| TGAATTCCACAAAGGACGAA+TGG | + | chr4_3:58941145-58941164 | None:intergenic | 40.0% | |
| GGCTGATAAATCAACCATTG+TGG | - | chr4_3:58941731-58941750 | Msa0651500:intron | 40.0% | |
| TCAAATCTGTATCCCCACTT+GGG | - | chr4_3:58941826-58941845 | Msa0651500:intron | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4_3:58941886-58941905 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4_3:58941897-58941916 | Msa0651500:intron | 40.0% |
| GTTGTACTGAACATATGTGG+TGG | - | chr4_3:58942026-58942045 | Msa0651500:intron | 40.0% | |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4_3:58942065-58942084 | Msa0651500:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4_3:58942088-58942107 | Msa0651500:CDS | 40.0% | |
| !! | CAGCTTTAGAAGTTATGACG+CGG | - | chr4_3:58942371-58942390 | Msa0651500:CDS | 40.0% |
| AGGTGAGAGTAGCAAACAAT+TGG | - | chr4_3:58940279-58940298 | Msa0651500:intron | 40.0% | |
| GAACTTTCTCCTTCTTGATC+AGG | - | chr4_3:58940760-58940779 | Msa0651500:CDS | 40.0% | |
| TTAAGAACCCTAGCTAGATG+GGG | + | chr4_3:58940873-58940892 | None:intergenic | 40.0% | |
| ! | CTTTAAGAACCCTAGCTAGA+TGG | + | chr4_3:58940875-58940894 | None:intergenic | 40.0% |
| CATCTAGCTAGGGTTCTTAA+AGG | - | chr4_3:58940873-58940892 | Msa0651500:intron | 40.0% | |
| TCTAGCTAGGGTTCTTAAAG+GGG | - | chr4_3:58940875-58940894 | Msa0651500:intron | 40.0% | |
| AAAGGGGCAATAGATCTACT+AGG | - | chr4_3:58940891-58940910 | Msa0651500:intron | 40.0% | |
| AAGGGGCAATAGATCTACTA+GGG | - | chr4_3:58940892-58940911 | Msa0651500:intron | 40.0% | |
| CCCTATCTATGGTAACAAGA+AGG | + | chr4_3:58940933-58940952 | None:intergenic | 40.0% | |
| TGTTACCATAGATAGGGATC+TGG | - | chr4_3:58940936-58940955 | Msa0651500:intron | 40.0% | |
| CCCGTATACAATGTCAAACT+TGG | - | chr4_3:58940959-58940978 | Msa0651500:intron | 40.0% | |
| TCCATTCAGGAATGGAATTC+AGG | - | chr4_3:58941109-58941128 | Msa0651500:intron | 40.0% | |
| ACCTGAATTCCATTCCTGAA+TGG | + | chr4_3:58941113-58941132 | None:intergenic | 40.0% | |
| TGAATTCCACAAAGGACGAA+TGG | + | chr4_3:58941145-58941164 | None:intergenic | 40.0% | |
| GGCTGATAAATCAACCATTG+TGG | - | chr4_3:58941731-58941750 | Msa0651500:intron | 40.0% | |
| TCAAATCTGTATCCCCACTT+GGG | - | chr4_3:58941826-58941845 | Msa0651500:intron | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4_3:58941886-58941905 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4_3:58941897-58941916 | Msa0651500:intron | 40.0% |
| GTTGTACTGAACATATGTGG+TGG | - | chr4_3:58942026-58942045 | Msa0651500:intron | 40.0% | |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4_3:58942065-58942084 | Msa0651500:CDS | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4_3:58942088-58942107 | Msa0651500:CDS | 40.0% | |
| !! | CAGCTTTAGAAGTTATGACG+CGG | - | chr4_3:58942371-58942390 | Msa0651500:CDS | 40.0% |
| CGATTTCTCTTCTTGCTCAC+GGG | + | chr4_3:58940352-58940371 | None:intergenic | 45.0% | |
| CCGATTTCTCTTCTTGCTCA+CGG | + | chr4_3:58940353-58940372 | None:intergenic | 45.0% | |
| CCGTGAGCAAGAAGAGAAAT+CGG | - | chr4_3:58940350-58940369 | Msa0651500:intron | 45.0% | |
| CGTGAGCAAGAAGAGAAATC+GGG | - | chr4_3:58940351-58940370 | Msa0651500:intron | 45.0% | |
| GTGAGCAAGAAGAGAAATCG+GGG | - | chr4_3:58940352-58940371 | Msa0651500:intron | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4_3:58940521-58940540 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4_3:58940522-58940541 | Msa0651500:CDS | 45.0% | |
| ! | TAGCTAGATGGGGGCTTTTA+AGG | + | chr4_3:58940863-58940882 | None:intergenic | 45.0% |
| TTAAAAGCCCCCATCTAGCT+AGG | - | chr4_3:58940862-58940881 | Msa0651500:intron | 45.0% | |
| TAAAAGCCCCCATCTAGCTA+GGG | - | chr4_3:58940863-58940882 | Msa0651500:intron | 45.0% | |
| TAAGAACCCTAGCTAGATGG+GGG | + | chr4_3:58940872-58940891 | None:intergenic | 45.0% | |
| TCTGAACCATTCGTCCTTTG+TGG | - | chr4_3:58941136-58941155 | Msa0651500:intron | 45.0% | |
| ACAGTATTAGAGCCAACCCA+TGG | - | chr4_3:58941418-58941437 | Msa0651500:intron | 45.0% | |
| AAGACTTCAAGTCCATGGGT+TGG | + | chr4_3:58941433-58941452 | None:intergenic | 45.0% | |
| CTCAAATCTGTATCCCCACT+TGG | - | chr4_3:58941825-58941844 | Msa0651500:intron | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4_3:58941856-58941875 | Msa0651500:intron | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4_3:58941874-58941893 | Msa0651500:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4_3:58941875-58941894 | Msa0651500:intron | 45.0% | |
| TTACCTCCACCACAACATGT+AGG | - | chr4_3:58941978-58941997 | Msa0651500:intron | 45.0% | |
| AAACCTACATGTTGTGGTGG+AGG | + | chr4_3:58941984-58942003 | None:intergenic | 45.0% | |
| CAGGCAAAACAAGCTTCACA+TGG | - | chr4_3:58942316-58942335 | Msa0651500:CDS | 45.0% | |
| CGATTTCTCTTCTTGCTCAC+GGG | + | chr4_3:58940352-58940371 | None:intergenic | 45.0% | |
| CCGATTTCTCTTCTTGCTCA+CGG | + | chr4_3:58940353-58940372 | None:intergenic | 45.0% | |
| CCGTGAGCAAGAAGAGAAAT+CGG | - | chr4_3:58940350-58940369 | Msa0651500:intron | 45.0% | |
| CGTGAGCAAGAAGAGAAATC+GGG | - | chr4_3:58940351-58940370 | Msa0651500:intron | 45.0% | |
| GTGAGCAAGAAGAGAAATCG+GGG | - | chr4_3:58940352-58940371 | Msa0651500:intron | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4_3:58940521-58940540 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4_3:58940522-58940541 | Msa0651500:CDS | 45.0% | |
| ! | TAGCTAGATGGGGGCTTTTA+AGG | + | chr4_3:58940863-58940882 | None:intergenic | 45.0% |
| TTAAAAGCCCCCATCTAGCT+AGG | - | chr4_3:58940862-58940881 | Msa0651500:intron | 45.0% | |
| TAAAAGCCCCCATCTAGCTA+GGG | - | chr4_3:58940863-58940882 | Msa0651500:intron | 45.0% | |
| TAAGAACCCTAGCTAGATGG+GGG | + | chr4_3:58940872-58940891 | None:intergenic | 45.0% | |
| TCTGAACCATTCGTCCTTTG+TGG | - | chr4_3:58941136-58941155 | Msa0651500:intron | 45.0% | |
| ACAGTATTAGAGCCAACCCA+TGG | - | chr4_3:58941418-58941437 | Msa0651500:intron | 45.0% | |
| AAGACTTCAAGTCCATGGGT+TGG | + | chr4_3:58941433-58941452 | None:intergenic | 45.0% | |
| CTCAAATCTGTATCCCCACT+TGG | - | chr4_3:58941825-58941844 | Msa0651500:intron | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4_3:58941856-58941875 | Msa0651500:intron | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4_3:58941874-58941893 | Msa0651500:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4_3:58941875-58941894 | Msa0651500:intron | 45.0% | |
| TTACCTCCACCACAACATGT+AGG | - | chr4_3:58941978-58941997 | Msa0651500:intron | 45.0% | |
| AAACCTACATGTTGTGGTGG+AGG | + | chr4_3:58941984-58942003 | None:intergenic | 45.0% | |
| CAGGCAAAACAAGCTTCACA+TGG | - | chr4_3:58942316-58942335 | Msa0651500:CDS | 45.0% | |
| GAGTTTGGGAGATCATCCCA+TGG | + | chr4_3:58940247-58940266 | None:intergenic | 50.0% | |
| AGCAAGAAGAGAAATCGGGG+TGG | - | chr4_3:58940355-58940374 | Msa0651500:intron | 50.0% | |
| GCAAGAAGAGAAATCGGGGT+GGG | - | chr4_3:58940356-58940375 | Msa0651500:intron | 50.0% | |
| CAAGAAGAGAAATCGGGGTG+GGG | - | chr4_3:58940357-58940376 | Msa0651500:intron | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4_3:58940513-58940532 | None:intergenic | 50.0% | |
| CTTACTTCAGGACCGAACTG+AGG | + | chr4_3:58941068-58941087 | None:intergenic | 50.0% | |
| CTTCACTGCTGCATCCACAA+TGG | + | chr4_3:58941748-58941767 | None:intergenic | 50.0% | |
| AGATGACTCACTCCCAAGTG+GGG | + | chr4_3:58941841-58941860 | None:intergenic | 50.0% | |
| CAGATGACTCACTCCCAAGT+GGG | + | chr4_3:58941842-58941861 | None:intergenic | 50.0% | |
| ACAGATGACTCACTCCCAAG+TGG | + | chr4_3:58941843-58941862 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4_3:58942086-58942105 | None:intergenic | 50.0% | |
| ! | GACCACAATTGCTTTGGTGC+TGG | - | chr4_3:58942094-58942113 | Msa0651500:CDS | 50.0% |
| CTCCAGCACCAAAGCAATTG+TGG | + | chr4_3:58942099-58942118 | None:intergenic | 50.0% | |
| TTCACATGGCGCAAACTCGA+TGG | - | chr4_3:58942330-58942349 | Msa0651500:CDS | 50.0% | |
| GAGTTTGGGAGATCATCCCA+TGG | + | chr4_3:58940247-58940266 | None:intergenic | 50.0% | |
| AGCAAGAAGAGAAATCGGGG+TGG | - | chr4_3:58940355-58940374 | Msa0651500:intron | 50.0% | |
| GCAAGAAGAGAAATCGGGGT+GGG | - | chr4_3:58940356-58940375 | Msa0651500:intron | 50.0% | |
| CAAGAAGAGAAATCGGGGTG+GGG | - | chr4_3:58940357-58940376 | Msa0651500:intron | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4_3:58940513-58940532 | None:intergenic | 50.0% | |
| CTTACTTCAGGACCGAACTG+AGG | + | chr4_3:58941068-58941087 | None:intergenic | 50.0% | |
| CTTCACTGCTGCATCCACAA+TGG | + | chr4_3:58941748-58941767 | None:intergenic | 50.0% | |
| AGATGACTCACTCCCAAGTG+GGG | + | chr4_3:58941841-58941860 | None:intergenic | 50.0% | |
| CAGATGACTCACTCCCAAGT+GGG | + | chr4_3:58941842-58941861 | None:intergenic | 50.0% | |
| ACAGATGACTCACTCCCAAG+TGG | + | chr4_3:58941843-58941862 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4_3:58942086-58942105 | None:intergenic | 50.0% | |
| ! | GACCACAATTGCTTTGGTGC+TGG | - | chr4_3:58942094-58942113 | Msa0651500:CDS | 50.0% |
| CTCCAGCACCAAAGCAATTG+TGG | + | chr4_3:58942099-58942118 | None:intergenic | 50.0% | |
| TTCACATGGCGCAAACTCGA+TGG | - | chr4_3:58942330-58942349 | Msa0651500:CDS | 50.0% | |
| ACGGGCCAGATCCCTATCTA+TGG | + | chr4_3:58940944-58940963 | None:intergenic | 55.0% | |
| ACATGGCGCAAACTCGATGG+AGG | - | chr4_3:58942333-58942352 | Msa0651500:CDS | 55.0% | |
| ACGGGCCAGATCCCTATCTA+TGG | + | chr4_3:58940944-58940963 | None:intergenic | 55.0% | |
| ACATGGCGCAAACTCGATGG+AGG | - | chr4_3:58942333-58942352 | Msa0651500:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 58940184 | 58942402 | 58940184 | ID=Msa0651500;Name=Msa0651500 |
| chr4_3 | mRNA | 58940184 | 58942402 | 58940184 | ID=Msa0651500-mRNA-1;Parent=Msa0651500;Name=Msa0651500-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|301 |
| chr4_3 | exon | 58942043 | 58942402 | 58942043 | ID=Msa0651500-mRNA-1:exon:15687;Parent=Msa0651500-mRNA-1 |
| chr4_3 | exon | 58940393 | 58940854 | 58940393 | ID=Msa0651500-mRNA-1:exon:15686;Parent=Msa0651500-mRNA-1 |
| chr4_3 | exon | 58940184 | 58940267 | 58940184 | ID=Msa0651500-mRNA-1:exon:15685;Parent=Msa0651500-mRNA-1 |
| chr4_3 | CDS | 58942043 | 58942402 | 58942043 | ID=Msa0651500-mRNA-1:cds;Parent=Msa0651500-mRNA-1 |
| chr4_3 | CDS | 58940393 | 58940854 | 58940393 | ID=Msa0651500-mRNA-1:cds;Parent=Msa0651500-mRNA-1 |
| chr4_3 | CDS | 58940184 | 58940267 | 58940184 | ID=Msa0651500-mRNA-1:cds;Parent=Msa0651500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
