AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651940 MtrunA17_Chr4g0045261 82.017 595 14 6 1 505 1 592 0.0 946
Msa0651940 MtrunA17_Chr8g0374701 61.296 602 114 16 1 504 1 581 0.0 650
Msa0651940 MtrunA17_Chr5g0402551 59.473 607 123 12 1 504 1 587 0.0 648
Msa0651940 MtrunA17_Chr7g0256001 58.621 551 132 9 46 502 46 594 0.0 596
Msa0651940 MtrunA17_Chr7g0276111 49.378 563 166 13 55 502 36 594 6.07e-164 477
Msa0651940 MtrunA17_Chr3g0127571 53.017 464 124 7 126 499 124 583 1.14e-154 453
Msa0651940 MtrunA17_Chr5g0405421 38.395 461 185 8 130 496 89 544 9.41e-88 280
Msa0651940 MtrunA17_Chr1g0176751 39.161 286 164 6 212 493 282 561 4.00e-62 213
Msa0651940 MtrunA17_Chr5g0441691 27.876 452 225 8 134 492 62 505 6.12e-62 211
Msa0651940 MtrunA17_Chr5g0397101 28.755 546 256 13 36 492 2 503 9.32e-61 207
Msa0651940 MtrunA17_Chr5g0444171 36.396 283 171 4 214 492 252 529 9.44e-60 206
Msa0651940 MtrunA17_Chr1g0200601 37.801 291 163 6 210 492 186 466 1.23e-58 201
Msa0651940 MtrunA17_Chr8g0387671 29.621 449 221 10 134 492 60 503 3.32e-58 201
Msa0651940 MtrunA17_Chr0c02g0489761 27.876 452 225 8 134 492 72 515 5.88e-58 201
Msa0651940 MtrunA17_Chr1g0170281 37.544 285 166 6 214 493 278 555 2.60e-57 200
Msa0651940 MtrunA17_Chr3g0131181 35.452 299 179 6 210 500 185 477 3.23e-57 198
Msa0651940 MtrunA17_Chr7g0267751 37.024 289 170 6 210 493 291 572 2.47e-56 197
Msa0651940 MtrunA17_Chr1g0157131 34.982 283 175 4 214 492 234 511 4.97e-56 195
Msa0651940 MtrunA17_Chr8g0385341 34.448 299 182 6 210 500 186 478 1.26e-55 194
Msa0651940 MtrunA17_Chr4g0074811 33.922 283 178 4 214 492 251 528 3.59e-55 193
Msa0651940 MtrunA17_Chr1g0176421 38.182 275 156 6 210 480 317 581 9.15e-54 191
Msa0651940 MtrunA17_Chr3g0098951 34.602 289 174 4 214 492 244 527 1.99e-53 188
Msa0651940 MtrunA17_Chr5g0448721 34.899 298 178 6 212 500 254 544 3.41e-53 188
Msa0651940 MtrunA17_Chr4g0059951 34.028 288 180 4 210 492 229 511 9.21e-53 187
Msa0651940 MtrunA17_Chr1g0173541 26.932 453 229 8 134 492 46 490 7.63e-52 184
Msa0651940 MtrunA17_Chr7g0257751 27.212 452 227 8 135 492 53 496 1.34e-51 183
Msa0651940 MtrunA17_Chr7g0242561 34.028 288 180 4 210 492 212 494 1.49e-51 183
Msa0651940 MtrunA17_Chr4g0033371 27.191 445 229 12 138 492 70 509 7.27e-44 162
Msa0651940 MtrunA17_Chr4g0074791 30.028 363 184 9 184 492 176 522 1.36e-43 161
Msa0651940 MtrunA17_Chr5g0444191 56.190 105 43 1 213 317 67 168 2.70e-33 125
Msa0651940 MtrunA17_Chr7g0267771 32.584 267 88 5 136 313 84 347 4.48e-33 131
Msa0651940 MtrunA17_Chr1g0190131 44.860 107 58 1 207 312 158 264 2.48e-24 102
Msa0651940 MtrunA17_Chr1g0203881 45.714 105 57 0 210 314 197 301 2.85e-24 105
Msa0651940 MtrunA17_Chr7g0274941 42.342 111 61 2 204 312 165 274 1.33e-22 98.2
Msa0651940 MtrunA17_Chr3g0132591 42.056 107 62 0 210 316 258 364 4.08e-21 96.3
Msa0651940 MtrunA17_Chr8g0355131 26.974 304 184 10 215 488 208 503 5.47e-19 90.1
Msa0651940 MtrunA17_Chr8g0353621 28.736 174 107 6 160 320 101 270 5.78e-15 75.1
Msa0651940 MtrunA17_Chr4g0001331 42.424 99 51 3 217 313 181 275 1.20e-14 76.3
Msa0651940 MtrunA17_Chr3g0125381 33.019 106 68 2 209 313 104 207 5.77e-14 71.2
Msa0651940 MtrunA17_Chr3g0140631 34.951 103 64 2 211 312 188 288 3.69e-13 70.1
Msa0651940 MtrunA17_Chr3g0132671 41.346 104 55 4 212 313 203 302 3.88e-13 71.6
Msa0651940 MtrunA17_Chr8g0351491 27.711 166 104 5 160 313 107 268 6.24e-13 69.3
Msa0651940 MtrunA17_Chr2g0304111 32.374 139 81 6 209 339 177 310 1.44e-12 69.7
Msa0651940 MtrunA17_Chr1g0170551 35.185 108 63 3 212 317 160 262 1.73e-12 70.5
Msa0651940 MtrunA17_Chr4g0063881 37.190 121 68 6 206 323 161 276 2.24e-12 68.9
Msa0651940 MtrunA17_Chr5g0399911 32.787 122 65 4 216 320 175 296 2.41e-12 68.2
Msa0651940 MtrunA17_Chr5g0441771 30.097 103 51 2 278 379 18 100 8.76e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651940 AT3G50530.1 63.123 602 116 12 1 500 1 598 0.0 704
Msa0651940 AT1G49580.1 57.237 608 143 11 1 499 1 600 0.0 620
Msa0651940 AT3G19100.1 56.465 611 147 13 1 504 1 599 0.0 610
Msa0651940 AT2G41140.1 55.051 594 156 9 1 502 1 575 0.0 582
Msa0651940 AT3G56760.1 53.769 597 160 10 1 502 1 576 0.0 570
Msa0651940 AT3G50530.2 83.007 306 51 1 195 500 325 629 0.0 537
Msa0651940 AT3G50530.2 49.798 247 68 8 1 195 1 243 2.14e-55 196
Msa0651940 AT2G46700.1 50.823 547 156 10 45 499 64 589 4.22e-152 447
Msa0651940 AT5G24430.1 45.261 612 198 12 1 499 1 588 1.97e-149 440
Msa0651940 AT3G49370.1 47.100 569 178 9 30 499 43 587 1.43e-141 420
Msa0651940 AT2G46700.2 66.323 291 95 2 209 499 121 408 2.64e-129 382
Msa0651940 AT2G46700.3 66.323 291 95 2 209 499 121 408 2.64e-129 382
Msa0651940 AT2G17890.1 37.645 518 210 11 78 499 56 556 2.80e-92 292
Msa0651940 AT5G66210.1 38.675 468 186 8 130 501 52 514 1.21e-85 274
Msa0651940 AT5G66210.2 38.675 468 186 8 130 501 52 514 1.21e-85 274
Msa0651940 AT5G66210.5 39.192 421 159 6 130 456 52 469 1.77e-82 264
Msa0651940 AT5G66210.3 39.192 421 159 6 130 456 52 469 2.54e-82 264
Msa0651940 AT4G36070.1 47.260 292 149 3 211 499 230 519 1.57e-80 261
Msa0651940 AT4G36070.2 47.260 292 149 3 211 499 230 519 5.31e-80 260
Msa0651940 AT5G66210.6 38.251 366 131 6 130 403 52 414 5.67e-68 225
Msa0651940 AT5G66210.4 38.251 366 131 6 130 403 52 414 5.67e-68 225
Msa0651940 AT5G12180.1 30.952 462 218 10 134 502 67 520 5.86e-67 225
Msa0651940 AT5G19360.1 30.973 452 211 10 134 492 62 505 7.71e-65 219
Msa0651940 AT4G21940.1 38.356 292 170 5 214 502 262 546 8.94e-64 217
Msa0651940 AT4G21940.2 38.356 292 170 5 214 502 262 546 1.43e-63 216
Msa0651940 AT5G04870.1 38.276 290 167 6 209 493 305 587 1.50e-61 212
Msa0651940 AT5G23580.1 38.276 290 163 6 210 492 178 458 9.65e-61 207
Msa0651940 AT1G50700.1 32.383 386 194 9 163 492 136 510 1.48e-60 207
Msa0651940 AT3G20410.2 32.902 386 192 9 163 492 154 528 2.40e-60 207
Msa0651940 AT3G20410.1 32.902 386 192 9 163 492 154 528 2.40e-60 207
Msa0651940 AT1G76040.1 34.812 293 183 3 214 503 34 321 1.18e-59 199
Msa0651940 AT1G76040.4 34.812 293 183 3 214 503 34 321 1.18e-59 199
Msa0651940 AT4G04720.2 37.153 288 173 4 214 498 240 522 1.59e-59 205
Msa0651940 AT4G04720.1 37.153 288 173 4 214 498 240 522 1.59e-59 205
Msa0651940 AT4G23650.1 30.112 445 210 9 141 492 79 515 3.00e-59 204
Msa0651940 AT4G09570.1 37.895 285 167 5 212 492 183 461 7.50e-59 202
Msa0651940 AT1G35670.1 37.979 287 168 5 210 492 182 462 1.48e-58 202
Msa0651940 AT3G10660.2 36.897 290 171 6 209 493 341 623 2.82e-58 204
Msa0651940 AT3G10660.1 36.897 290 171 6 209 493 341 623 2.82e-58 204
Msa0651940 AT4G21940.3 41.702 235 132 3 214 448 262 491 3.73e-58 201
Msa0651940 AT1G76040.2 34.812 293 183 3 214 503 272 559 3.82e-58 202
Msa0651940 AT1G50700.2 30.825 412 192 10 163 492 136 536 5.74e-57 199
Msa0651940 AT2G38910.1 36.111 288 174 5 210 493 290 571 7.95e-57 199
Msa0651940 AT4G35310.2 36.545 301 169 7 212 500 255 545 2.37e-56 197
Msa0651940 AT4G35310.1 36.545 301 169 7 212 500 255 545 2.37e-56 197
Msa0651940 AT4G38230.1 34.797 296 182 6 212 502 38 327 1.33e-55 189
Msa0651940 AT4G04740.4 35.461 282 174 3 214 492 229 505 3.04e-55 193
Msa0651940 AT4G04740.6 35.461 282 174 3 214 492 229 505 3.04e-55 193
Msa0651940 AT4G04740.5 35.461 282 174 3 214 492 229 505 3.04e-55 193
Msa0651940 AT4G04740.3 35.461 282 174 3 214 492 229 505 3.04e-55 193
Msa0651940 AT4G04740.1 35.461 282 174 3 214 492 229 505 3.04e-55 193
Msa0651940 AT4G04740.7 35.461 282 174 3 214 492 229 505 3.04e-55 193
Msa0651940 AT1G50700.3 33.628 339 161 8 163 448 136 463 8.80e-55 191
Msa0651940 AT1G61950.1 34.694 294 183 4 214 503 259 547 1.92e-54 192
Msa0651940 AT2G41860.1 35.764 288 175 4 210 492 210 492 2.61e-54 191
Msa0651940 AT2G17290.1 35.786 299 170 7 214 500 245 533 3.42e-54 191
Msa0651940 AT2G17290.2 35.786 299 170 7 214 500 245 533 3.42e-54 191
Msa0651940 AT4G38230.2 34.797 296 182 6 212 502 212 501 5.70e-54 190
Msa0651940 AT4G38230.4 34.797 296 182 6 212 502 182 471 5.73e-54 189
Msa0651940 AT4G38230.3 34.797 296 182 6 212 502 182 471 5.73e-54 189
Msa0651940 AT2G41860.2 35.417 288 176 4 210 492 210 492 6.85e-54 190
Msa0651940 AT4G04740.2 36.131 274 165 4 214 484 229 495 2.81e-52 186
Msa0651940 AT3G51850.1 32.986 288 183 4 210 492 210 492 4.11e-52 185
Msa0651940 AT3G57530.1 33.681 288 180 5 210 492 219 500 7.26e-52 184
Msa0651940 AT5G19450.2 28.097 452 224 7 135 492 52 496 8.57e-52 184
Msa0651940 AT5G19450.1 28.097 452 224 7 135 492 52 496 8.57e-52 184
Msa0651940 AT1G74740.1 36.458 288 173 4 210 492 215 497 1.16e-51 184
Msa0651940 AT3G51850.2 35.317 252 157 3 210 460 210 456 1.37e-51 183
Msa0651940 AT1G76040.3 37.339 233 141 2 214 446 272 499 7.22e-51 181
Msa0651940 AT5G12480.1 28.035 453 223 9 135 492 54 498 1.41e-50 181
Msa0651940 AT5G12480.2 33.218 289 182 4 210 492 121 404 1.93e-50 179
Msa0651940 AT1G18890.1 34.028 288 180 4 210 492 219 501 4.15e-50 180
Msa0651940 AT2G35890.2 35.622 233 144 4 210 437 288 519 6.70e-49 176
Msa0651940 AT2G35890.1 35.622 233 144 4 210 437 288 519 6.70e-49 176
Msa0651940 AT4G04695.1 30.565 301 199 4 200 497 180 473 1.05e-47 172
Msa0651940 AT4G04700.1 30.565 301 199 5 200 497 180 473 1.49e-46 169
Msa0651940 AT2G31500.1 31.615 291 186 4 210 492 222 507 2.00e-46 171
Msa0651940 AT4G04710.1 31.023 303 191 6 200 492 188 482 6.64e-45 165
Msa0651940 AT4G04710.4 31.148 305 190 7 200 492 188 484 2.10e-44 164
Msa0651940 AT4G04710.3 31.419 296 186 7 200 492 174 455 5.09e-44 162
Msa0651940 AT3G57530.2 41.243 177 103 1 210 385 219 395 6.26e-44 160
Msa0651940 AT4G04710.2 30.743 296 188 6 200 492 188 469 6.38e-44 162
Msa0651940 AT3G51850.3 36.923 195 121 2 210 403 210 403 5.17e-43 158
Msa0651940 AT1G12580.1 48.148 108 56 0 210 317 200 307 1.09e-26 113
Msa0651940 AT1G08650.1 46.296 108 57 1 207 313 167 274 1.53e-23 100
Msa0651940 AT1G12680.1 42.593 108 62 0 210 317 253 360 3.74e-21 96.7
Msa0651940 AT3G04530.1 38.739 111 67 1 210 319 166 276 2.97e-20 91.3
Msa0651940 AT1G08650.2 45.631 103 55 1 207 308 167 269 6.20e-20 90.1
Msa0651940 AT2G45490.1 36.792 106 64 2 215 319 177 280 1.97e-15 77.4
Msa0651940 AT5G10930.1 38.053 113 62 4 203 313 162 268 2.12e-14 75.9
Msa0651940 AT5G25110.1 34.884 129 74 5 203 329 192 312 2.28e-13 72.8
Msa0651940 AT1G48260.2 38.136 118 59 5 209 317 80 192 3.87e-13 71.2
Msa0651940 AT1G48260.4 38.136 118 59 5 209 317 80 192 3.87e-13 71.2
Msa0651940 AT1G48260.3 38.136 118 59 5 209 317 80 192 3.87e-13 71.2
Msa0651940 AT1G48260.5 38.136 118 59 5 209 317 80 192 3.87e-13 71.2
Msa0651940 AT1G48260.1 38.136 118 59 5 209 317 165 277 5.21e-13 71.2
Msa0651940 AT1G30270.3 34.259 108 65 4 208 313 87 190 8.16e-13 70.5
Msa0651940 AT2G25880.2 32.407 108 70 2 211 317 144 249 9.22e-13 68.9
Msa0651940 AT5G39440.1 39.000 100 56 3 217 315 178 273 1.02e-12 70.9
Msa0651940 AT1G30270.2 34.259 108 65 4 208 313 184 287 1.09e-12 70.5
Msa0651940 AT1G30270.1 34.259 108 65 4 208 313 184 287 1.12e-12 70.5
Msa0651940 AT2G25880.1 32.407 108 70 2 211 317 176 281 1.42e-12 68.9
Msa0651940 AT2G25090.1 39.252 107 59 4 209 313 177 279 1.55e-12 70.1
Msa0651940 AT2G25880.4 32.407 108 70 2 211 317 189 294 1.58e-12 68.9
Msa0651940 AT2G25880.3 32.407 108 70 2 211 317 237 342 3.58e-12 68.2
Msa0651940 AT3G29160.3 41.584 101 53 4 217 315 179 275 5.89e-12 67.8
Msa0651940 AT3G13530.1 36.697 109 61 4 209 314 173 276 6.54e-12 68.9
Msa0651940 AT3G29160.1 41.584 101 53 4 217 315 179 275 1.04e-11 67.8
Msa0651940 AT3G29160.2 41.584 101 53 4 217 315 179 275 1.04e-11 67.8
Msa0651940 AT4G32830.1 31.481 108 71 2 211 317 182 287 1.09e-11 66.2
Msa0651940 AT3G25250.1 31.250 144 93 3 180 322 201 339 3.09e-11 65.9

Find 194 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGATGACGTCATCTTTC+CGG 0.189511 4_3:+59509011 None:intergenic
GAGGGAGCAATTTGCGTTAT+TGG 0.216958 4_3:-59505144 Msa0651940:CDS
ATAATGAAACTATACTTTAA+TGG 0.217109 4_3:+59504255 None:intergenic
TTCTGCTGCTAAATTCAAAA+AGG 0.220385 4_3:-59508660 Msa0651940:CDS
CGTCTCCGGCGAAGCATATA+AGG 0.221762 4_3:-59508844 Msa0651940:CDS
AGAGGAGGGTGCCGGGGATT+TGG 0.252703 4_3:-59508765 Msa0651940:CDS
TGTCAAACGCCTACTAAATA+AGG 0.254423 4_3:-59505544 Msa0651940:CDS
AAACAAAACAAATAAAGTTT+AGG 0.265947 4_3:+59509694 None:intergenic
TAGATACTTGTAATTTCTTT+TGG 0.267330 4_3:-59509595 Msa0651940:five_prime_UTR
GATGGGAAGCTAAGCTTTCT+TGG 0.273435 4_3:-59504463 Msa0651940:CDS
ACAGAATCAACCTTTGCTTT+AGG 0.277305 4_3:+59508599 None:intergenic
TATGTGGCAGTCGCCCATTT+TGG 0.283793 4_3:-59505665 Msa0651940:CDS
GGGGATTTGGACAAGAGATT+TGG 0.286938 4_3:-59508752 Msa0651940:CDS
TAGAATTAGCTTTGCCTTGA+TGG 0.294413 4_3:-59504150 Msa0651940:three_prime_UTR
CTGCATCATTCATGTGTTGC+AGG 0.295235 4_3:-59506886 Msa0651940:CDS
TAATGAAACTATACTTTAAT+GGG 0.317413 4_3:+59504256 None:intergenic
GATTCCGTTCGAGCCCAAAA+TGG 0.318603 4_3:+59505651 None:intergenic
AACTATAAGTGGATTTGTTT+AGG 0.323100 4_3:+59509298 None:intergenic
GACGTCATCTTTCCGGTTAC+CGG 0.327161 4_3:+59509018 None:intergenic
AGTGAAAAGAGGAGAGAAAA+TGG 0.329094 4_3:+59509424 None:intergenic
CTTCTGTACTGTAAGATCTA+TGG 0.330336 4_3:+59505727 None:intergenic
GGTCAGTTTCCGTTTCTCTA+AGG 0.333191 4_3:+59509077 None:intergenic
ATTCTTGGCCTTCAGTCAAA+TGG 0.339989 4_3:-59509566 Msa0651940:five_prime_UTR
TGCACGTGAGTATTGAGTTT+TGG 0.340875 4_3:+59509377 None:intergenic
ACCTCCTCGGCGTCGAGTTC+CGG 0.359814 4_3:+59508891 None:intergenic
TCCGTTTCTCTAAGGGCATA+TGG 0.361312 4_3:+59509085 None:intergenic
TTGTATTGTTGCCACAGATT+TGG 0.365017 4_3:+59509528 None:intergenic
TTCTTGGCCTTCAGTCAAAT+GGG 0.365377 4_3:-59509565 Msa0651940:five_prime_UTR
AACAAAACAAATAAAGTTTA+GGG 0.366719 4_3:+59509695 None:intergenic
AAGAGGAGAGAAAATGGTTA+TGG 0.367033 4_3:+59509430 None:intergenic
TTCTGCGATCGTTCAACAAT+GGG 0.367353 4_3:-59509139 Msa0651940:exon
TTAGTAGTAAGTTGGAGGTT+GGG 0.372405 4_3:-59508715 Msa0651940:CDS
CTTGCGTAAGGCTGCCTTAA+GGG 0.372410 4_3:-59505311 Msa0651940:intron
GGGTCTGTGGGATTTGTGTT+GGG 0.379398 4_3:+59509056 None:intergenic
TAGTAGTAAGTTGGAGGTTG+GGG 0.384497 4_3:-59508714 Msa0651940:CDS
TAAGATCTATGGAGAACTTC+AGG 0.387822 4_3:+59505738 None:intergenic
TCATGAAGAACAACATGAAC+AGG 0.388496 4_3:+59504502 None:intergenic
AAGACGGAGAGGAGGGTGCC+GGG 0.390289 4_3:-59508772 Msa0651940:CDS
TCTCTAAGGGCATATGGGTT+TGG 0.391934 4_3:+59509091 None:intergenic
TTTAGTAGTAAGTTGGAGGT+TGG 0.392622 4_3:-59508716 Msa0651940:CDS
GGGATTTGGACAAGAGATTT+GGG 0.394158 4_3:-59508751 Msa0651940:CDS
GAAGGAAGCCGCGGCGATAC+CGG 0.397131 4_3:-59508795 Msa0651940:CDS
TTACATCATAACTGAACCTT+TGG 0.397511 4_3:+59504400 None:intergenic
GGGGTCTGTGGGATTTGTGT+TGG 0.401303 4_3:+59509055 None:intergenic
AGGGACTTTGTGGGGTCTGT+GGG 0.401388 4_3:+59509044 None:intergenic
GCACCCTCCTCTCCGTCTTC+CGG 0.404544 4_3:+59508776 None:intergenic
TTCATGTTGTTCTTCATGAC+TGG 0.408369 4_3:-59504498 Msa0651940:CDS
CGCCGGAGACGGCGGTGGAA+AGG 0.410497 4_3:+59508856 None:intergenic
GAAGACGGAGAGGAGGGTGC+CGG 0.412876 4_3:-59508773 Msa0651940:CDS
ACCCTTTCCACCGCCGTCTC+CGG 0.413033 4_3:-59508858 Msa0651940:CDS
CCGTTTCTCTAAGGGCATAT+GGG 0.420284 4_3:+59509086 None:intergenic
TTCAGAAACCGAGCTGGACT+TGG 0.426256 4_3:+59508956 None:intergenic
TCCGAGGGTCCTTATTTAGT+AGG 0.426501 4_3:+59505535 None:intergenic
TTGGGGAAGAAGTGGGTAGG+GGG 0.428867 4_3:-59508697 Msa0651940:CDS
ATCTTTCCGGTTACCGGTGT+AGG 0.429908 4_3:+59509024 None:intergenic
ATGGGAAGCTAAGCTTTCTT+GGG 0.430557 4_3:-59504462 Msa0651940:CDS
TTCTGAAGATAAGGATGGCC+AGG 0.433199 4_3:+59505578 None:intergenic
TTACCGGTGTAGGGACTTTG+TGG 0.434674 4_3:+59509034 None:intergenic
GAAGAGAATAGTGAAGCAAT+AGG 0.436926 4_3:+59509475 None:intergenic
ACGGCGGTGGAAAGGGTCGC+CGG 0.439602 4_3:+59508864 None:intergenic
TACCGGTGTAGGGACTTTGT+GGG 0.439768 4_3:+59509035 None:intergenic
GAAAGGCTTAATGACATTGT+TGG 0.439898 4_3:-59505780 Msa0651940:CDS
GCCGGAGACGGCGGTGGAAA+GGG 0.441075 4_3:+59508857 None:intergenic
GTTGGGGAAGAAGTGGGTAG+GGG 0.441303 4_3:-59508698 Msa0651940:CDS
AGAATTAGCTTTGCCTTGAT+GGG 0.441371 4_3:-59504149 Msa0651940:three_prime_UTR
TAGGGACTTTGTGGGGTCTG+TGG 0.447521 4_3:+59509043 None:intergenic
TTCATCAGCAGTTAAAGTCT+TGG 0.449560 4_3:+59505178 None:intergenic
ACTGAACCTTTGGAAGGCTT+CGG 0.452114 4_3:+59504410 None:intergenic
ATTCTTAGAATCTAATTATG+TGG 0.452584 4_3:-59504003 Msa0651940:three_prime_UTR
AACTCGAAGCTCTTGATCGT+TGG 0.452769 4_3:-59504776 Msa0651940:CDS
AGTGATACGAGACTCTTTCA+TGG 0.454073 4_3:+59504971 None:intergenic
AAAGTCCCTACACCGGTAAC+CGG 0.456028 4_3:-59509030 Msa0651940:CDS
ACTCGAAGCTCTTGATCGTT+GGG 0.457978 4_3:-59504775 Msa0651940:CDS
TGAGTTCATTACAATATAGA+AGG 0.458011 4_3:-59504842 Msa0651940:CDS
GAGATAGGTTGAACTATAAG+TGG 0.458361 4_3:+59509287 None:intergenic
AGAGGAGAGAAAATGGTTAT+GGG 0.458756 4_3:+59509431 None:intergenic
CCTTGCGTAAGGCTGCCTTA+AGG 0.462823 4_3:-59505312 Msa0651940:CDS
ATAGGTGTGAAGATGGAAAA+GGG 0.469510 4_3:+59509493 None:intergenic
AACCAAAATACTCACCCTTA+AGG 0.474068 4_3:+59505297 None:intergenic
AAAATTACGAGCAAAATAAA+GGG 0.475659 4_3:+59509627 None:intergenic
GTCAGTTTCCGTTTCTCTAA+GGG 0.476829 4_3:+59509078 None:intergenic
TTGTGCTTGCAGGTCATCCT+TGG 0.478555 4_3:-59505414 Msa0651940:intron
ATTCCGTTCGAGCCCAAAAT+GGG 0.479899 4_3:+59505652 None:intergenic
GCAAATGCATGTGGATATGC+TGG 0.480346 4_3:-59504376 Msa0651940:three_prime_UTR
GTTGGAGGTTGGGGAAGAAG+TGG 0.482998 4_3:-59508705 Msa0651940:CDS
TGAAGCAATAGGTGTGAAGA+TGG 0.485312 4_3:+59509486 None:intergenic
TGCTTCGCCGGAGACGGCGG+TGG 0.488799 4_3:+59508851 None:intergenic
CTTATATGCTTCGCCGGAGA+CGG 0.489808 4_3:+59508845 None:intergenic
GCATATGGGTTTGGTTTCTG+TGG 0.489837 4_3:+59509100 None:intergenic
TTGGAGGTTGGGGAAGAAGT+GGG 0.490434 4_3:-59508704 Msa0651940:CDS
GGTTGGGGAAGAAGTGGGTA+GGG 0.497003 4_3:-59508699 Msa0651940:CDS
GCTGGACTTGGACTGTAAAA+CGG 0.497439 4_3:+59508968 None:intergenic
TTCCGGCTTCTTTCACTCGC+CGG 0.498690 4_3:+59508908 None:intergenic
GAAACGAATATCTGCTGCTC+AGG 0.499972 4_3:-59505514 Msa0651940:CDS
GGCTAGGAGACAAGGGAAGA+AGG 0.501528 4_3:-59508813 Msa0651940:CDS
TGAATTTGGAAAGTGAAAAG+AGG 0.503312 4_3:+59509413 None:intergenic
CCCATATGCCCTTAGAGAAA+CGG 0.506425 4_3:-59509086 Msa0651940:CDS
CTTTCACTCGCCGGAGTCGA+CGG 0.508785 4_3:+59508917 None:intergenic
GAAGCTGATGTGTGGAGTAT+AGG 0.509073 4_3:-59505708 Msa0651940:CDS
TCTTTCCGGTTACCGGTGTA+GGG 0.510977 4_3:+59509025 None:intergenic
CTTGCGATGGCTTCAGATGC+CGG 0.512408 4_3:+59504284 None:intergenic
GACTGGATACGCCACACAGA+TGG 0.512586 4_3:-59504481 Msa0651940:CDS
GACGTTTCAGGTTATGTGAA+GGG 0.515873 4_3:-59507362 Msa0651940:intron
GTCTCCGGCGAAGCATATAA+GGG 0.519041 4_3:-59508843 Msa0651940:CDS
AATAGGTGTGAAGATGGAAA+AGG 0.523516 4_3:+59509492 None:intergenic
TAAATTATTCCCACCCATCA+AGG 0.524406 4_3:+59504136 None:intergenic
CATGAATGATGCAGAGGCAA+AGG 0.525833 4_3:+59506895 None:intergenic
ATCATAACTGAACCTTTGGA+AGG 0.527959 4_3:+59504404 None:intergenic
TTAGCTTTGCCTTGATGGGT+GGG 0.528319 4_3:-59504145 Msa0651940:three_prime_UTR
CAGGCTTTGACGAAGGTCCC+TGG 0.529064 4_3:-59505596 Msa0651940:CDS
GAAGCATATAAGGGCTGTGT+TGG 0.530113 4_3:-59508834 Msa0651940:CDS
ATATAAGGGCTGTGTTGGCT+AGG 0.532349 4_3:-59508829 Msa0651940:CDS
CAGGGACCTTCGTCAAAGCC+TGG 0.533051 4_3:+59505597 None:intergenic
ATTAGCTTTGCCTTGATGGG+TGG 0.538845 4_3:-59504146 Msa0651940:three_prime_UTR
TTCATTACAATATAGAAGGA+TGG 0.539395 4_3:-59504838 Msa0651940:CDS
ATAGCATATATTCTATTATG+TGG 0.539846 4_3:-59505681 Msa0651940:CDS
CGGAAAGATGACGTCATCGC+CGG 0.542842 4_3:-59509010 Msa0651940:CDS
CTGCGATCGTTCAACAATGG+GGG 0.544524 4_3:-59509137 Msa0651940:exon
TTGAATATTAAAATATCAAG+CGG 0.544868 4_3:+59505364 None:intergenic
TGTCATGTAATACAGATGAA+AGG 0.549491 4_3:-59505797 Msa0651940:intron
GGGTTTGTCAAATTATTGCA+TGG 0.549590 4_3:-59504442 Msa0651940:CDS
CTTCTGCGATCGTTCAACAA+TGG 0.550468 4_3:-59509140 Msa0651940:exon
GCCTACTAAATAAGGACCCT+CGG 0.551570 4_3:-59505536 Msa0651940:CDS
TCTTAGACATGATACTATCA+AGG 0.552356 4_3:-59507332 Msa0651940:intron
GACTTCTTCAGAAACCGAGC+TGG 0.555421 4_3:+59508950 None:intergenic
AGACGGAGAGGAGGGTGCCG+GGG 0.558532 4_3:-59508771 Msa0651940:CDS
ACAAAACAAATAAAGTTTAG+GGG 0.559034 4_3:+59509696 None:intergenic
ACAGCCCTTATATGCTTCGC+CGG 0.561892 4_3:+59508839 None:intergenic
GCTGTGTTGGCTAGGAGACA+AGG 0.562344 4_3:-59508821 Msa0651940:CDS
CTGATGAACTCTATTATCTG+AGG 0.562591 4_3:-59505163 Msa0651940:CDS
TATGGGATTGAAAATGATGA+TGG 0.564329 4_3:+59509448 None:intergenic
CTCCGGCGAGTGAAAGAAGC+CGG 0.564735 4_3:-59508910 Msa0651940:CDS
TTTGCTTCTGAAGATAAGGA+TGG 0.564854 4_3:+59505573 None:intergenic
GCCGCGGCGATACCGGAAGA+CGG 0.568127 4_3:-59508788 Msa0651940:CDS
GACCTTGTTAATGTTCTCCA+AGG 0.568400 4_3:+59505097 None:intergenic
AAATCTCTTGTCCAAATCCC+CGG 0.568972 4_3:+59508754 None:intergenic
CGACGTTTCAGGTTATGTGA+AGG 0.570325 4_3:-59507363 Msa0651940:intron
ATTGTCATGGTGTAATATGA+AGG 0.570885 4_3:+59509652 None:intergenic
AGGTTGGGGAAGAAGTGGGT+AGG 0.573863 4_3:-59508700 Msa0651940:CDS
TTTACAGTCCAAGTCCAGCT+CGG 0.574544 4_3:-59508964 Msa0651940:CDS
TCCGTCCACTCCGTCGACTC+CGG 0.574877 4_3:-59508927 Msa0651940:CDS
TGCATCATTCATGTGTTGCA+GGG 0.575649 4_3:-59506885 Msa0651940:CDS
ATTCATGTGTTGCAGGGACA+TGG 0.575959 4_3:-59506879 Msa0651940:intron
TGCGATCGTTCAACAATGGG+GGG 0.576843 4_3:-59509136 Msa0651940:exon
AAAATAAAGGGTGATTGTCA+TGG 0.576927 4_3:+59509639 None:intergenic
ACGTTTCAGGTTATGTGAAG+GGG 0.578083 4_3:-59507361 Msa0651940:intron
TTAATGGGCTATGCTTGCGA+TGG 0.581192 4_3:+59504271 None:intergenic
GCCGGAGTCGACGGAGTGGA+CGG 0.586039 4_3:+59508926 None:intergenic
GCTGATCCAGGCTTTGACGA+AGG 0.586638 4_3:-59505603 Msa0651940:CDS
ACAACATGAACAGGGATCGA+TGG 0.588231 4_3:+59504511 None:intergenic
ACCGGTGTAGGGACTTTGTG+GGG 0.592128 4_3:+59509036 None:intergenic
CAACTGATGATTTGTCTCAC+CGG 0.592847 4_3:-59504303 Msa0651940:three_prime_UTR
ACTGGATACGCCACACAGAT+GGG 0.593079 4_3:-59504480 Msa0651940:CDS
GAAGCCGGAACTCGACGCCG+AGG 0.593089 4_3:-59508895 Msa0651940:CDS
GAGATCGTCATCCTTGCGTA+AGG 0.594749 4_3:-59505323 Msa0651940:CDS
ATATGCTTCGCCGGAGACGG+CGG 0.595691 4_3:+59508848 None:intergenic
TAGGTGTGAAGATGGAAAAG+GGG 0.595838 4_3:+59509494 None:intergenic
TCATTGTAATTACGTATCCA+AGG 0.596858 4_3:+59505397 None:intergenic
AGGTGTGAAGATGGAAAAGG+GGG 0.596985 4_3:+59509495 None:intergenic
ACAAGGGAAGAAGGAAGCCG+CGG 0.599647 4_3:-59508804 Msa0651940:CDS
CAGCAGATATTCGTTTCCGA+GGG 0.600716 4_3:+59505520 None:intergenic
GAAAGTGATTCCTAAAGCAA+AGG 0.601196 4_3:-59508609 Msa0651940:intron
CAAAACAAATAAAGTTTAGG+GGG 0.601243 4_3:+59509697 None:intergenic
ACGATTCATATCTTAAGCCA+CGG 0.603113 4_3:+59504178 None:intergenic
GATACCGGAAGACGGAGAGG+AGG 0.604596 4_3:-59508780 Msa0651940:CDS
TGATGAACTCTATTATCTGA+GGG 0.605388 4_3:-59505162 Msa0651940:CDS
TGTTGGAAGTGCATATTATG+TGG 0.607885 4_3:-59505763 Msa0651940:CDS
GCAGCAGATATTCGTTTCCG+AGG 0.611163 4_3:+59505519 None:intergenic
AATGTTAAATTAGTACACTC+AGG 0.612333 4_3:+59504023 None:intergenic
GGCGATACCGGAAGACGGAG+AGG 0.613978 4_3:-59508783 Msa0651940:CDS
ATCTAGCCGAAGCCTTCCAA+AGG 0.616362 4_3:-59504416 Msa0651940:CDS
TCTTGGCCTTCAGTCAAATG+GGG 0.620270 4_3:-59509564 Msa0651940:five_prime_UTR
TCTGAAGATAAGGATGGCCA+GGG 0.621620 4_3:+59505579 None:intergenic
ATACCGGAAGACGGAGAGGA+GGG 0.626151 4_3:-59508779 Msa0651940:CDS
CGTTTCAGGTTATGTGAAGG+GGG 0.632420 4_3:-59507360 Msa0651940:intron
TGGCTTAAGATATGAATCGT+AGG 0.632724 4_3:-59504175 Msa0651940:three_prime_UTR
TGAGTTTAAGGGTCAACAAG+TGG 0.635747 4_3:-59508636 Msa0651940:CDS
GCCGGAACTCGACGCCGAGG+AGG 0.638617 4_3:-59508892 Msa0651940:CDS
CTGTGTTGGCTAGGAGACAA+GGG 0.641843 4_3:-59508820 Msa0651940:CDS
CATGAAGAACAACATGAACA+GGG 0.642426 4_3:+59504503 None:intergenic
CTTGGCCTTCAGTCAAATGG+GGG 0.643803 4_3:-59509563 Msa0651940:five_prime_UTR
TGATGTAAAGCAAATGCATG+TGG 0.648125 4_3:-59504385 Msa0651940:three_prime_UTR
CCTTAAGGCAGCCTTACGCA+AGG 0.649837 4_3:+59505312 None:intergenic
ACAATATGTAGCCAAATCTG+TGG 0.651696 4_3:-59509539 Msa0651940:five_prime_UTR
ACAGTACAGAAGCTGATGTG+TGG 0.655391 4_3:-59505716 Msa0651940:CDS
GCAACACATGAATGATGCAG+AGG 0.670580 4_3:+59506889 None:intergenic
TCTGCGATCGTTCAACAATG+GGG 0.677309 4_3:-59509138 Msa0651940:exon
ATCCTTGGAGAACATTAACA+AGG 0.679000 4_3:-59505099 Msa0651940:intron
ACTCGCCGGAGTCGACGGAG+TGG 0.681048 4_3:+59508922 None:intergenic
GGGATTGAAAATGATGATGG+TGG 0.681795 4_3:+59509451 None:intergenic
ACCCCACAAAGTCCCTACAC+CGG 0.683745 4_3:-59509037 Msa0651940:CDS
AGCTTAGCTTCCCATCTGTG+TGG 0.691574 4_3:+59504470 None:intergenic
TAAAATAGTCTACAGAACCG+TGG 0.711771 4_3:-59504195 Msa0651940:three_prime_UTR
TCCGTCTTCCGGTATCGCCG+CGG 0.712014 4_3:+59508787 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAATGAATATGTAATTA+CGG + chr4_3:59505590-59505609 None:intergenic 10.0%
!! TTAAATTGAATTATTGAATA+TGG - chr4_3:59507668-59507687 Msa0651940:intron 10.0%
!! ATTATGTATAATAATAACTA+TGG + chr4_3:59509049-59509068 None:intergenic 10.0%
!! TTATAAAGTATAAACAAAAT+AGG + chr4_3:59509084-59509103 None:intergenic 10.0%
!! AACAAAACAAATAAAGTTTA+GGG + chr4_3:59504009-59504028 None:intergenic 15.0%
!! AAACAAAACAAATAAAGTTT+AGG + chr4_3:59504010-59504029 None:intergenic 15.0%
!! TTGAAAAAAAAAATTGAGAT+AGG + chr4_3:59504432-59504451 None:intergenic 15.0%
!! TTAAATATGATTAACTATAG+CGG + chr4_3:59506752-59506771 None:intergenic 15.0%
!!! TACATTTGATTTGTTATAAA+AGG - chr4_3:59507079-59507098 Msa0651940:intron 15.0%
!!! ACATTTGATTTGTTATAAAA+GGG - chr4_3:59507080-59507099 Msa0651940:intron 15.0%
!! TTATGTTGGAAAATAAAAAA+GGG + chr4_3:59507230-59507249 None:intergenic 15.0%
!! ATTATGTTGGAAAATAAAAA+AGG + chr4_3:59507231-59507250 None:intergenic 15.0%
!! TTGAATATTAAAATATCAAG+CGG + chr4_3:59508340-59508359 None:intergenic 15.0%
!! ATACAATTAAAAACCAAAAA+CGG + chr4_3:59508467-59508486 None:intergenic 15.0%
!!! AAACATTTTTTGAAGAAATA+TGG + chr4_3:59509150-59509169 None:intergenic 15.0%
!!! TTCTTCAAAAAATGTTTTAT+AGG - chr4_3:59509153-59509172 Msa0651940:five_prime_UTR 15.0%
!! TAATGAAACTATACTTTAAT+GGG + chr4_3:59509448-59509467 None:intergenic 15.0%
!! ATAATGAAACTATACTTTAA+TGG + chr4_3:59509449-59509468 None:intergenic 15.0%
!! ACAAAACAAATAAAGTTTAG+GGG + chr4_3:59504008-59504027 None:intergenic 20.0%
!! AAAATTACGAGCAAAATAAA+GGG + chr4_3:59504077-59504096 None:intergenic 20.0%
!! AAAAATTACGAGCAAAATAA+AGG + chr4_3:59504078-59504097 None:intergenic 20.0%
!!! TAGATACTTGTAATTTCTTT+TGG - chr4_3:59504106-59504125 Msa0651940:three_prime_UTR 20.0%
!!! CTTTGCAAAAGTTTTAAAAT+GGG + chr4_3:59504455-59504474 None:intergenic 20.0%
!!! TGTTTATTGTGACTATATTT+TGG - chr4_3:59505551-59505570 Msa0651940:CDS 20.0%
!!! TTCCTTTTCAATTTTGATTT+TGG - chr4_3:59505776-59505795 Msa0651940:CDS 20.0%
!! TACCAAAATCAAAATTGAAA+AGG + chr4_3:59505781-59505800 None:intergenic 20.0%
!! ATACCATATTCATAATTAAC+TGG - chr4_3:59506308-59506327 Msa0651940:intron 20.0%
!! TATCCAGTTAATTATGAATA+TGG + chr4_3:59506314-59506333 None:intergenic 20.0%
!!! CATTTGATTTGTTATAAAAG+GGG - chr4_3:59507081-59507100 Msa0651940:intron 20.0%
!!! ATTTTTTATAGTCTGTACAA+TGG + chr4_3:59507206-59507225 None:intergenic 20.0%
!! ATATTGACCAATATATCATA+AGG + chr4_3:59507320-59507339 None:intergenic 20.0%
!!! TATCAAGAATTAATTTTTGC+TGG - chr4_3:59507600-59507619 Msa0651940:intron 20.0%
!! ATAGCATATATTCTATTATG+TGG - chr4_3:59508020-59508039 Msa0651940:intron 20.0%
!! AATATAAACGAGATTCTAAT+AGG - chr4_3:59508237-59508256 Msa0651940:intron 20.0%
!! TAAATTTATACTCATTTCGT+TGG - chr4_3:59508490-59508509 Msa0651940:intron 20.0%
!!! TTTTCTCATTCATATTTTTC+TGG - chr4_3:59508678-59508697 Msa0651940:CDS 20.0%
!!! TTTCTCATTCATATTTTTCT+GGG - chr4_3:59508679-59508698 Msa0651940:CDS 20.0%
!! TATTAAATCATCAGTATACA+TGG - chr4_3:59509114-59509133 Msa0651940:CDS 20.0%
!!! AAAAATGTTTTATAGGAACT+TGG - chr4_3:59509160-59509179 Msa0651940:five_prime_UTR 20.0%
!! ATTCTTAGAATCTAATTATG+TGG - chr4_3:59509698-59509717 Msa0651940:five_prime_UTR 20.0%
! CAAAACAAATAAAGTTTAGG+GGG + chr4_3:59504007-59504026 None:intergenic 25.0%
!! ACTTGTAATTTCTTTTGGTA+CGG - chr4_3:59504111-59504130 Msa0651940:three_prime_UTR 25.0%
!! AACTATAAGTGGATTTGTTT+AGG + chr4_3:59504406-59504425 None:intergenic 25.0%
!!! GCTTTGCAAAAGTTTTAAAA+TGG + chr4_3:59504456-59504475 None:intergenic 25.0%
!! CATTGCAAAAATAGTTTTCT+GGG + chr4_3:59504506-59504525 None:intergenic 25.0%
!!! AAAGGATTTTAGTAGTAAGT+TGG - chr4_3:59504978-59504997 Msa0651940:CDS 25.0%
!!! ATGCTTTGGAATATTGTTAT+AGG - chr4_3:59505211-59505230 Msa0651940:intron 25.0%
!!! CTTGGAATTCGTTTTAATTT+TGG - chr4_3:59505234-59505253 Msa0651940:intron 25.0%
! TATTTGCTTGATAAACTTTG+AGG - chr4_3:59505269-59505288 Msa0651940:intron 25.0%
!!! TTGATAAACTTTGAGGTTTT+AGG - chr4_3:59505276-59505295 Msa0651940:intron 25.0%
!!! GTGTTAGTTTATGTGTTTTT+TGG - chr4_3:59505380-59505399 Msa0651940:CDS 25.0%
! TTGATGTTGATCAAACTTAT+TGG - chr4_3:59505468-59505487 Msa0651940:intron 25.0%
!! TTACAATGTAGACATTTTCT+TGG + chr4_3:59505732-59505751 None:intergenic 25.0%
! AGAAAATGTCTACATTGTAA+TGG - chr4_3:59505732-59505751 Msa0651940:CDS 25.0%
! TAACTAAATGATTCAGCTAT+TGG - chr4_3:59506120-59506139 Msa0651940:intron 25.0%
! TTAAACCTAATAAATCACCT+TGG + chr4_3:59506237-59506256 None:intergenic 25.0%
!! ACATTGTTTGATTTAGAAAC+TGG - chr4_3:59507123-59507142 Msa0651940:intron 25.0%
! CAAAACTTCAAGAATTATGT+TGG + chr4_3:59507244-59507263 None:intergenic 25.0%
! AACACATCCTTATGATATAT+TGG - chr4_3:59507310-59507329 Msa0651940:intron 25.0%
!!! GAATTTTTTGTACACTACAA+AGG - chr4_3:59507747-59507766 Msa0651940:intron 25.0%
! AGTTAAAAGCTATAGACTTT+GGG - chr4_3:59507782-59507801 Msa0651940:intron 25.0%
! TAGAATCTCGTTTATATTAG+AGG + chr4_3:59508235-59508254 None:intergenic 25.0%
!!! AAACTTCTTACAAGTTGATA+TGG + chr4_3:59508635-59508654 None:intergenic 25.0%
! AATATGAATGAGAAAACTTG+TGG + chr4_3:59508674-59508693 None:intergenic 25.0%
! GAATCTACAATAATAGAAGA+AGG + chr4_3:59508780-59508799 None:intergenic 25.0%
! TGAGTTCATTACAATATAGA+AGG - chr4_3:59508859-59508878 Msa0651940:CDS 25.0%
! TTCATTACAATATAGAAGGA+TGG - chr4_3:59508863-59508882 Msa0651940:CDS 25.0%
! AAACAAAATAGGTGTAAATG+TGG + chr4_3:59509073-59509092 None:intergenic 25.0%
!!! CATTTTTTGAAGAAATATGG+TGG + chr4_3:59509147-59509166 None:intergenic 25.0%
!! ATGCAAAATGATTCTTTTGA+AGG - chr4_3:59509472-59509491 Msa0651940:five_prime_UTR 25.0%
! AATGTTAAATTAGTACACTC+AGG + chr4_3:59509681-59509700 None:intergenic 25.0%
ATTGTCATGGTGTAATATGA+AGG + chr4_3:59504052-59504071 None:intergenic 30.0%
AAAATAAAGGGTGATTGTCA+TGG + chr4_3:59504065-59504084 None:intergenic 30.0%
TATGGGATTGAAAATGATGA+TGG + chr4_3:59504256-59504275 None:intergenic 30.0%
TGAATTTGGAAAGTGAAAAG+AGG + chr4_3:59504291-59504310 None:intergenic 30.0%
!!! GTTTTGGTGTTCATTGAATT+TGG + chr4_3:59504305-59504324 None:intergenic 30.0%
!!! TGAGTATTGAGTTTTGGTTT+TGG + chr4_3:59504321-59504340 None:intergenic 30.0%
! GCATTGCAAAAATAGTTTTC+TGG + chr4_3:59504507-59504526 None:intergenic 30.0%
!!! AAAAAACGGAGACTTTTTTC+CGG + chr4_3:59504713-59504732 None:intergenic 30.0%
TTCTGCTGCTAAATTCAAAA+AGG - chr4_3:59505041-59505060 Msa0651940:intron 30.0%
TCTGCTGCTAAATTCAAAAA+GGG - chr4_3:59505042-59505061 Msa0651940:intron 30.0%
ATTCAAAAAGGGTGAGTTTA+AGG - chr4_3:59505053-59505072 Msa0651940:intron 30.0%
TTCAAAAAGGGTGAGTTTAA+GGG - chr4_3:59505054-59505073 Msa0651940:intron 30.0%
CAGCTAGAAATAATCATAGA+AGG + chr4_3:59505135-59505154 None:intergenic 30.0%
TGATACTTTGATGAATCACT+TGG - chr4_3:59505187-59505206 Msa0651940:CDS 30.0%
TTGGAATATTGTTATAGGCT+TGG - chr4_3:59505216-59505235 Msa0651940:intron 30.0%
!! TTTCTGGTTACTTGTGTTTA+AGG - chr4_3:59505303-59505322 Msa0651940:intron 30.0%
TTGTTTGGAAATGTTTCTCT+AGG - chr4_3:59505345-59505364 Msa0651940:CDS 30.0%
! ACTTGAGGAATAAAGAGTAT+AGG - chr4_3:59505497-59505516 Msa0651940:intron 30.0%
TATAGGAATTGAATTTGCCT+TGG - chr4_3:59505514-59505533 Msa0651940:CDS 30.0%
ATTGAATTTGCCTTGGAATT+TGG - chr4_3:59505521-59505540 Msa0651940:CDS 30.0%
!! AAAATATTGCGAGCTTTGAA+CGG - chr4_3:59505667-59505686 Msa0651940:CDS 30.0%
CGTACATACATTTCTTAACT+AGG + chr4_3:59505821-59505840 None:intergenic 30.0%
GATTTCATCAATTCAACTAG+TGG - chr4_3:59505940-59505959 Msa0651940:intron 30.0%
TCTTAGACATGATACTATCA+AGG - chr4_3:59506369-59506388 Msa0651940:intron 30.0%
TGAAGAAGCAATAAATCATG+TGG + chr4_3:59506571-59506590 None:intergenic 30.0%
ATGATTTATTGCTTCTTCAG+AGG - chr4_3:59506572-59506591 Msa0651940:intron 30.0%
AGATCTGATATAAGCCTATA+AGG - chr4_3:59506855-59506874 Msa0651940:intron 30.0%
ACATATGGACAACTGTTAAA+AGG + chr4_3:59507046-59507065 None:intergenic 30.0%
TATAAGTAAACACGCACATA+TGG + chr4_3:59507061-59507080 None:intergenic 30.0%
! TTTGATTTAGAAACTGGTCA+TGG - chr4_3:59507129-59507148 Msa0651940:intron 30.0%
TTGATTTAGAAACTGGTCAT+GGG - chr4_3:59507130-59507149 Msa0651940:intron 30.0%
GAACTAAATGAAACTGCATA+AGG + chr4_3:59507346-59507365 None:intergenic 30.0%
! ATGCAGTTTCATTTAGTTCA+CGG - chr4_3:59507347-59507366 Msa0651940:CDS 30.0%
AAAATGACAAATTCCATGTC+CGG - chr4_3:59507420-59507439 Msa0651940:intron 30.0%
GAGTTAAAAGCTATAGACTT+TGG - chr4_3:59507781-59507800 Msa0651940:intron 30.0%
TGTCATGTAATACAGATGAA+AGG - chr4_3:59507904-59507923 Msa0651940:intron 30.0%
!! ATCTTTTGCTTCTGAAGATA+AGG + chr4_3:59508135-59508154 None:intergenic 30.0%
TCATTGTAATTACGTATCCA+AGG + chr4_3:59508307-59508326 None:intergenic 30.0%
! GTGATGAAAATTACCGTTTT+TGG - chr4_3:59508451-59508470 Msa0651940:intron 30.0%
TGATGAACTCTATTATCTGA+GGG - chr4_3:59508539-59508558 Msa0651940:intron 30.0%
TTATTGGAACCAAGCAAAAA+CGG - chr4_3:59508573-59508592 Msa0651940:intron 30.0%
!!! TATCACTGATTTTCTTTCCT+CGG - chr4_3:59508746-59508765 Msa0651940:CDS 30.0%
AACAACCAGTCAAACTAATT+CGG + chr4_3:59508802-59508821 None:intergenic 30.0%
TGAACTCAGCTGTAATAAAA+GGG + chr4_3:59508847-59508866 None:intergenic 30.0%
ATGAACTCAGCTGTAATAAA+AGG + chr4_3:59508848-59508867 None:intergenic 30.0%
!! GGATTTTGAAGAATTTTGTG+CGG - chr4_3:59508884-59508903 Msa0651940:CDS 30.0%
TTACATCATAACTGAACCTT+TGG + chr4_3:59509304-59509323 None:intergenic 30.0%
ACAATATGTAGCCAAATCTG+TGG - chr4_3:59504162-59504181 Msa0651940:three_prime_UTR 35.0%
TTGTATTGTTGCCACAGATT+TGG + chr4_3:59504176-59504195 None:intergenic 35.0%
ATAGGTGTGAAGATGGAAAA+GGG + chr4_3:59504211-59504230 None:intergenic 35.0%
AATAGGTGTGAAGATGGAAA+AGG + chr4_3:59504212-59504231 None:intergenic 35.0%
GAAGAGAATAGTGAAGCAAT+AGG + chr4_3:59504229-59504248 None:intergenic 35.0%
AGAGGAGAGAAAATGGTTAT+GGG + chr4_3:59504273-59504292 None:intergenic 35.0%
AAGAGGAGAGAAAATGGTTA+TGG + chr4_3:59504274-59504293 None:intergenic 35.0%
AGTGAAAAGAGGAGAGAAAA+TGG + chr4_3:59504280-59504299 None:intergenic 35.0%
GAAGAAGAAGAAGAAGAGAT+TGG + chr4_3:59504373-59504392 None:intergenic 35.0%
! GAGATAGGTTGAACTATAAG+TGG + chr4_3:59504417-59504436 None:intergenic 35.0%
GGACTGTAAAACGGAAAAAA+CGG + chr4_3:59504727-59504746 None:intergenic 35.0%
!! CAAGAGATTTGGGTTTTCAA+AGG - chr4_3:59504960-59504979 Msa0651940:CDS 35.0%
!! GGATTTTAGTAGTAAGTTGG+AGG - chr4_3:59504981-59505000 Msa0651940:CDS 35.0%
! TTTAGTAGTAAGTTGGAGGT+TGG - chr4_3:59504985-59505004 Msa0651940:CDS 35.0%
! TTAGTAGTAAGTTGGAGGTT+GGG - chr4_3:59504986-59505005 Msa0651940:CDS 35.0%
GAAAGTGATTCCTAAAGCAA+AGG - chr4_3:59505092-59505111 Msa0651940:intron 35.0%
ACAGAATCAACCTTTGCTTT+AGG + chr4_3:59505105-59505124 None:intergenic 35.0%
ATGAATCACTTGGTATGCTT+TGG - chr4_3:59505197-59505216 Msa0651940:intron 35.0%
!!! TGAGGTTTTAGGTTGTTTTC+TGG - chr4_3:59505287-59505306 Msa0651940:intron 35.0%
TGTTTAAGGATATGCTGTTG+AGG - chr4_3:59505317-59505336 Msa0651940:CDS 35.0%
ACTTATTGGAGTTGAACTTG+AGG - chr4_3:59505482-59505501 Msa0651940:intron 35.0%
ACAATATCGTCCAAATTCCA+AGG + chr4_3:59505534-59505553 None:intergenic 35.0%
AATTGAAGATGTGAGAAGAG+AGG - chr4_3:59505642-59505661 Msa0651940:CDS 35.0%
!! AAATATTGCGAGCTTTGAAC+GGG - chr4_3:59505668-59505687 Msa0651940:CDS 35.0%
!! AAAAGACTTGTTAGCTGAAG+TGG + chr4_3:59505864-59505883 None:intergenic 35.0%
! CATCAATTCAACTAGTGGAT+TGG - chr4_3:59505945-59505964 Msa0651940:intron 35.0%
!! ACCTTGGTGTCACTATATAT+GGG + chr4_3:59506221-59506240 None:intergenic 35.0%
TGACACCAAGGTGATTTATT+AGG - chr4_3:59506229-59506248 Msa0651940:intron 35.0%
TAAATCATGTGGCTAGTAAG+TGG + chr4_3:59506560-59506579 None:intergenic 35.0%
ATTTATTGCTTCTTCAGAGG+AGG - chr4_3:59506575-59506594 Msa0651940:intron 35.0%
TTTATTGCTTCTTCAGAGGA+GGG - chr4_3:59506576-59506595 Msa0651940:intron 35.0%
! TGTTGCATTTTGTCATCTTC+AGG - chr4_3:59506649-59506668 Msa0651940:intron 35.0%
! GTTGCATTTTGTCATCTTCA+GGG - chr4_3:59506650-59506669 Msa0651940:intron 35.0%
!! GCAAAGGCTTTTTGTTTGAA+GGG + chr4_3:59506793-59506812 None:intergenic 35.0%
GAAAAGATGAGTGACCTTAT+AGG + chr4_3:59506872-59506891 None:intergenic 35.0%
!! GATTTGTTATAAAAGGGGAC+TGG - chr4_3:59507086-59507105 Msa0651940:intron 35.0%
TGTACTGGACAAAATAGTAC+AGG + chr4_3:59507273-59507292 None:intergenic 35.0%
ATTTGCGAAACAGTATGTAC+TGG + chr4_3:59507288-59507307 None:intergenic 35.0%
TTCTGAATAAGAGAACGCAA+GGG + chr4_3:59507730-59507749 None:intergenic 35.0%
ATTCTGAATAAGAGAACGCA+AGG + chr4_3:59507731-59507750 None:intergenic 35.0%
! TTATCAGATTTTGTCAGACC+AGG - chr4_3:59507805-59507824 Msa0651940:intron 35.0%
GATACTCATACCAAAACCAA+GGG + chr4_3:59507845-59507864 None:intergenic 35.0%
AGATACTCATACCAAAACCA+AGG + chr4_3:59507846-59507865 None:intergenic 35.0%
GAAAGGCTTAATGACATTGT+TGG - chr4_3:59507921-59507940 Msa0651940:intron 35.0%
! TGTTGGAAGTGCATATTATG+TGG - chr4_3:59507938-59507957 Msa0651940:intron 35.0%
TAAGATCTATGGAGAACTTC+AGG + chr4_3:59507966-59507985 None:intergenic 35.0%
CTTCTGTACTGTAAGATCTA+TGG + chr4_3:59507977-59507996 None:intergenic 35.0%
! AACGGAATCAGGCATTTTTA+GGG - chr4_3:59508064-59508083 Msa0651940:intron 35.0%
! TTTGCTTCTGAAGATAAGGA+TGG + chr4_3:59508131-59508150 None:intergenic 35.0%
TGTCAAACGCCTACTAAATA+AGG - chr4_3:59508157-59508176 Msa0651940:intron 35.0%
AACAATAATCTTGTGCTTGC+AGG - chr4_3:59508277-59508296 Msa0651940:intron 35.0%
AACCAAAATACTCACCCTTA+AGG + chr4_3:59508407-59508426 None:intergenic 35.0%
TTTATACTCATTTCGTTGGC+AGG - chr4_3:59508494-59508513 Msa0651940:intron 35.0%
TTCATCAGCAGTTAAAGTCT+TGG + chr4_3:59508526-59508545 None:intergenic 35.0%
CTGATGAACTCTATTATCTG+AGG - chr4_3:59508538-59508557 Msa0651940:intron 35.0%
ATCCTTGGAGAACATTAACA+AGG - chr4_3:59508602-59508621 Msa0651940:intron 35.0%
! TCATTCATATTTTTCTGGGC+AGG - chr4_3:59508683-59508702 Msa0651940:CDS 35.0%
!! AGAAGAAGGTATTATTACCG+AGG + chr4_3:59508766-59508785 None:intergenic 35.0%
! AGATTCCGAATTAGTTTGAC+TGG - chr4_3:59508794-59508813 Msa0651940:CDS 35.0%
! GTTTTATAGGAACTTGGACT+TGG - chr4_3:59509166-59509185 Msa0651940:five_prime_UTR 35.0%
CATGAAGAACAACATGAACA+GGG + chr4_3:59509201-59509220 None:intergenic 35.0%
TCATGAAGAACAACATGAAC+AGG + chr4_3:59509202-59509221 None:intergenic 35.0%
TTCATGTTGTTCTTCATGAC+TGG - chr4_3:59509203-59509222 Msa0651940:five_prime_UTR 35.0%
GGGTTTGTCAAATTATTGCA+TGG - chr4_3:59509259-59509278 Msa0651940:five_prime_UTR 35.0%
ATCATAACTGAACCTTTGGA+AGG + chr4_3:59509300-59509319 None:intergenic 35.0%
TGATGTAAAGCAAATGCATG+TGG - chr4_3:59509316-59509335 Msa0651940:five_prime_UTR 35.0%
TAAAATAGTCTACAGAACCG+TGG - chr4_3:59509506-59509525 Msa0651940:five_prime_UTR 35.0%
ACGATTCATATCTTAAGCCA+CGG + chr4_3:59509526-59509545 None:intergenic 35.0%
TGGCTTAAGATATGAATCGT+AGG - chr4_3:59509526-59509545 Msa0651940:five_prime_UTR 35.0%
!! TAGAATTAGCTTTGCCTTGA+TGG - chr4_3:59509551-59509570 Msa0651940:five_prime_UTR 35.0%
!! AGAATTAGCTTTGCCTTGAT+GGG - chr4_3:59509552-59509571 Msa0651940:five_prime_UTR 35.0%
TAAATTATTCCCACCCATCA+AGG + chr4_3:59509568-59509587 None:intergenic 35.0%
! TTCTTTTGGTACGGCATTCT+TGG - chr4_3:59504120-59504139 Msa0651940:three_prime_UTR 40.0%
! ATTCTTGGCCTTCAGTCAAA+TGG - chr4_3:59504135-59504154 Msa0651940:three_prime_UTR 40.0%
! TTCTTGGCCTTCAGTCAAAT+GGG - chr4_3:59504136-59504155 Msa0651940:three_prime_UTR 40.0%
TAGGTGTGAAGATGGAAAAG+GGG + chr4_3:59504210-59504229 None:intergenic 40.0%
TGAAGCAATAGGTGTGAAGA+TGG + chr4_3:59504218-59504237 None:intergenic 40.0%
!! GGGATTGAAAATGATGATGG+TGG + chr4_3:59504253-59504272 None:intergenic 40.0%
!!! TGCACGTGAGTATTGAGTTT+TGG + chr4_3:59504327-59504346 None:intergenic 40.0%
TTCTGCGATCGTTCAACAAT+GGG - chr4_3:59504562-59504581 Msa0651940:intron 40.0%
GTCAGTTTCCGTTTCTCTAA+GGG + chr4_3:59504626-59504645 None:intergenic 40.0%
AAATCTCTTGTCCAAATCCC+CGG + chr4_3:59504950-59504969 None:intergenic 40.0%
GGGATTTGGACAAGAGATTT+GGG - chr4_3:59504950-59504969 Msa0651940:intron 40.0%
! TAGTAGTAAGTTGGAGGTTG+GGG - chr4_3:59504987-59505006 Msa0651940:CDS 40.0%
TGAGTTTAAGGGTCAACAAG+TGG - chr4_3:59505065-59505084 Msa0651940:intron 40.0%
GCTGTTGAGGATTGTTTGTT+TGG - chr4_3:59505330-59505349 Msa0651940:CDS 40.0%
!! GGAAATGTTTCTCTAGGACT+TGG - chr4_3:59505351-59505370 Msa0651940:CDS 40.0%
! TTGCAATTGCTGTTGTCATC+TGG + chr4_3:59505624-59505643 None:intergenic 40.0%
!! CCTTGGTGTCACTATATATG+GGG + chr4_3:59506220-59506239 None:intergenic 40.0%
!! CACCTTGGTGTCACTATATA+TGG + chr4_3:59506222-59506241 None:intergenic 40.0%
!! GACGTTTCAGGTTATGTGAA+GGG - chr4_3:59506339-59506358 Msa0651940:intron 40.0%
!! ACGTTTCAGGTTATGTGAAG+GGG - chr4_3:59506340-59506359 Msa0651940:intron 40.0%
TTGAAATAACGCCGCTAACA+CGG + chr4_3:59506506-59506525 None:intergenic 40.0%
ATACTCAGAAGATGATGCCA+AGG - chr4_3:59506601-59506620 Msa0651940:intron 40.0%
TATTTGTACCATGACAGCCT+TGG + chr4_3:59506621-59506640 None:intergenic 40.0%
! ATTTTGTCATCTTCAGGGTG+TGG - chr4_3:59506655-59506674 Msa0651940:intron 40.0%
TGAAAGAATATGCTCACCTC+AGG + chr4_3:59506698-59506717 None:intergenic 40.0%
!! AGGCTTTTTGTTTGAAGGGA+GGG + chr4_3:59506789-59506808 None:intergenic 40.0%
!! AAGGCTTTTTGTTTGAAGGG+AGG + chr4_3:59506790-59506809 None:intergenic 40.0%
!! GGCAAAGGCTTTTTGTTTGA+AGG + chr4_3:59506794-59506813 None:intergenic 40.0%
TGCATCATTCATGTGTTGCA+GGG - chr4_3:59506816-59506835 Msa0651940:intron 40.0%
TTCTTATCGCTTTATGTCGC+TGG - chr4_3:59506889-59506908 Msa0651940:CDS 40.0%
GACGACTCATGTTGAAAAGT+TGG + chr4_3:59506945-59506964 None:intergenic 40.0%
TTTAGAAACTGGTCATGGGA+CGG - chr4_3:59507134-59507153 Msa0651940:intron 40.0%
ACAAAACAGGTAGCAAGGAA+CGG - chr4_3:59507158-59507177 Msa0651940:intron 40.0%
! TCATTTAGTTCACGGTCACT+TGG - chr4_3:59507355-59507374 Msa0651940:CDS 40.0%
TCTGAATAAGAGAACGCAAG+GGG + chr4_3:59507729-59507748 None:intergenic 40.0%
AAAATTGCTGAACTCTCGTG+AGG + chr4_3:59507873-59507892 None:intergenic 40.0%
! GAACGGAATCAGGCATTTTT+AGG - chr4_3:59508063-59508082 Msa0651940:intron 40.0%
! TGCCTTAAGGGTGAGTATTT+TGG - chr4_3:59508402-59508421 Msa0651940:intron 40.0%
GACCTTGTTAATGTTCTCCA+AGG + chr4_3:59508607-59508626 None:intergenic 40.0%
AGTGATACGAGACTCTTTCA+TGG + chr4_3:59508733-59508752 None:intergenic 40.0%
ATGGGAAGCTAAGCTTTCTT+GGG - chr4_3:59509239-59509258 Msa0651940:five_prime_UTR 40.0%
! CAACTGATGATTTGTCTCAC+CGG - chr4_3:59509398-59509417 Msa0651940:five_prime_UTR 40.0%
! TCTTGGCCTTCAGTCAAATG+GGG - chr4_3:59504137-59504156 Msa0651940:three_prime_UTR 45.0%
TTGTTCCCCCATTTGACTGA+AGG + chr4_3:59504146-59504165 None:intergenic 45.0%
AGGTGTGAAGATGGAAAAGG+GGG + chr4_3:59504209-59504228 None:intergenic 45.0%
CTTCTGCGATCGTTCAACAA+TGG - chr4_3:59504561-59504580 Msa0651940:intron 45.0%
TCTGCGATCGTTCAACAATG+GGG - chr4_3:59504563-59504582 Msa0651940:intron 45.0%
! GCATATGGGTTTGGTTTCTG+TGG + chr4_3:59504604-59504623 None:intergenic 45.0%
! TCTCTAAGGGCATATGGGTT+TGG + chr4_3:59504613-59504632 None:intergenic 45.0%
! CCGTTTCTCTAAGGGCATAT+GGG + chr4_3:59504618-59504637 None:intergenic 45.0%
CCCATATGCCCTTAGAGAAA+CGG - chr4_3:59504615-59504634 Msa0651940:intron 45.0%
! TCCGTTTCTCTAAGGGCATA+TGG + chr4_3:59504619-59504638 None:intergenic 45.0%
GGTCAGTTTCCGTTTCTCTA+AGG + chr4_3:59504627-59504646 None:intergenic 45.0%
GCTGGACTTGGACTGTAAAA+CGG + chr4_3:59504736-59504755 None:intergenic 45.0%
TTTACAGTCCAAGTCCAGCT+CGG - chr4_3:59504737-59504756 Msa0651940:CDS 45.0%
GAAGCATATAAGGGCTGTGT+TGG - chr4_3:59504867-59504886 Msa0651940:intron 45.0%
!! ATATAAGGGCTGTGTTGGCT+AGG - chr4_3:59504872-59504891 Msa0651940:intron 45.0%
GGGGATTTGGACAAGAGATT+TGG - chr4_3:59504949-59504968 Msa0651940:intron 45.0%
TTTGAACGGGCACAGCAATT+TGG - chr4_3:59505681-59505700 Msa0651940:CDS 45.0%
CCCCATATATAGTGACACCA+AGG - chr4_3:59506217-59506236 Msa0651940:intron 45.0%
CTGGATACTATCGACGTTTC+AGG - chr4_3:59506327-59506346 Msa0651940:intron 45.0%
!! CGACGTTTCAGGTTATGTGA+AGG - chr4_3:59506338-59506357 Msa0651940:intron 45.0%
!! CGTTTCAGGTTATGTGAAGG+GGG - chr4_3:59506341-59506360 Msa0651940:intron 45.0%
GCATGAAATAGAGCCGCTAT+CGG - chr4_3:59506412-59506431 Msa0651940:intron 45.0%
CATGAATGATGCAGAGGCAA+AGG + chr4_3:59506809-59506828 None:intergenic 45.0%
GCAACACATGAATGATGCAG+AGG + chr4_3:59506815-59506834 None:intergenic 45.0%
CTGCATCATTCATGTGTTGC+AGG - chr4_3:59506815-59506834 Msa0651940:intron 45.0%
ATTCATGTGTTGCAGGGACA+TGG - chr4_3:59506822-59506841 Msa0651940:intron 45.0%
TTAGAAACTGGTCATGGGAC+GGG - chr4_3:59507135-59507154 Msa0651940:intron 45.0%
CAAAACAGGTAGCAAGGAAC+GGG - chr4_3:59507159-59507178 Msa0651940:intron 45.0%
! GAAACTAGCTTCCTTGTCAG+AGG - chr4_3:59507384-59507403 Msa0651940:intron 45.0%
TTATCCTAGCACCTCTGACA+AGG + chr4_3:59507398-59507417 None:intergenic 45.0%
AAATTCCATGTCCGGTCACT+TGG - chr4_3:59507428-59507447 Msa0651940:intron 45.0%
! GAAACTAGCTTCCTTGTCAG+AGG - chr4_3:59507384-59507403 Msa0651940:intron 45.0%
TTATCCTAGCACCTCTGACA+AGG + chr4_3:59507398-59507417 None:intergenic 45.0%
!! AATGCTAGTCTTCAGCTGAC+TGG + chr4_3:59507515-59507534 None:intergenic 45.0%
TGAATAAGAGAACGCAAGGG+GGG + chr4_3:59507727-59507746 None:intergenic 45.0%
CTGAATAAGAGAACGCAAGG+GGG + chr4_3:59507728-59507747 None:intergenic 45.0%
AGGGCTTGTGAAGAAAAACC+TGG + chr4_3:59507826-59507845 None:intergenic 45.0%
! GGTTTTTCTTCACAAGCCCT+TGG - chr4_3:59507826-59507845 Msa0651940:intron 45.0%
! TCTTCACAAGCCCTTGGTTT+TGG - chr4_3:59507832-59507851 Msa0651940:intron 45.0%
ACAGTACAGAAGCTGATGTG+TGG - chr4_3:59507985-59508004 Msa0651940:intron 45.0%
GAAGCTGATGTGTGGAGTAT+AGG - chr4_3:59507993-59508012 Msa0651940:intron 45.0%
ATTCCGTTCGAGCCCAAAAT+GGG + chr4_3:59508052-59508071 None:intergenic 45.0%
!!! GCAGTTTTGAAAGCTGATCC+AGG - chr4_3:59508086-59508105 Msa0651940:intron 45.0%
TCTGAAGATAAGGATGGCCA+GGG + chr4_3:59508125-59508144 None:intergenic 45.0%
! TTCTGAAGATAAGGATGGCC+AGG + chr4_3:59508126-59508145 None:intergenic 45.0%
GCCTACTAAATAAGGACCCT+CGG - chr4_3:59508165-59508184 Msa0651940:intron 45.0%
! TCCGAGGGTCCTTATTTAGT+AGG + chr4_3:59508169-59508188 None:intergenic 45.0%
CAGCAGATATTCGTTTCCGA+GGG + chr4_3:59508184-59508203 None:intergenic 45.0%
GAAACGAATATCTGCTGCTC+AGG - chr4_3:59508187-59508206 Msa0651940:intron 45.0%
GAGGGAGCAATTTGCGTTAT+TGG - chr4_3:59508557-59508576 Msa0651940:intron 45.0%
!!! GATATGCTGCCGTTTTTGCT+TGG + chr4_3:59508585-59508604 None:intergenic 45.0%
CAAAAACGGCAGCATATCCT+TGG - chr4_3:59508587-59508606 Msa0651940:intron 45.0%
AACTCGAAGCTCTTGATCGT+TGG - chr4_3:59508925-59508944 Msa0651940:CDS 45.0%
ACTCGAAGCTCTTGATCGTT+GGG - chr4_3:59508926-59508945 Msa0651940:CDS 45.0%
ACAACATGAACAGGGATCGA+TGG + chr4_3:59509193-59509212 None:intergenic 45.0%
GATGGGAAGCTAAGCTTTCT+TGG - chr4_3:59509238-59509257 Msa0651940:five_prime_UTR 45.0%
! ACTGAACCTTTGGAAGGCTT+CGG + chr4_3:59509294-59509313 None:intergenic 45.0%
GCAAATGCATGTGGATATGC+TGG - chr4_3:59509325-59509344 Msa0651940:five_prime_UTR 45.0%
! GCTGGATTTTCTCTGCTATG+CGG - chr4_3:59509343-59509362 Msa0651940:five_prime_UTR 45.0%
!! TTAATGGGCTATGCTTGCGA+TGG + chr4_3:59509433-59509452 None:intergenic 45.0%
!! ATTAGCTTTGCCTTGATGGG+TGG - chr4_3:59509555-59509574 Msa0651940:five_prime_UTR 45.0%
!! TTAGCTTTGCCTTGATGGGT+GGG - chr4_3:59509556-59509575 Msa0651940:five_prime_UTR 45.0%
! CTTGGCCTTCAGTCAAATGG+GGG - chr4_3:59504138-59504157 Msa0651940:three_prime_UTR 50.0%
CTGCGATCGTTCAACAATGG+GGG - chr4_3:59504564-59504583 Msa0651940:intron 50.0%
TGCGATCGTTCAACAATGGG+GGG - chr4_3:59504565-59504584 Msa0651940:intron 50.0%
GGGTCTGTGGGATTTGTGTT+GGG + chr4_3:59504648-59504667 None:intergenic 50.0%
TACCGGTGTAGGGACTTTGT+GGG + chr4_3:59504669-59504688 None:intergenic 50.0%
TTACCGGTGTAGGGACTTTG+TGG + chr4_3:59504670-59504689 None:intergenic 50.0%
AAAGTCCCTACACCGGTAAC+CGG - chr4_3:59504671-59504690 Msa0651940:intron 50.0%
TCTTTCCGGTTACCGGTGTA+GGG + chr4_3:59504679-59504698 None:intergenic 50.0%
ATCTTTCCGGTTACCGGTGT+AGG + chr4_3:59504680-59504699 None:intergenic 50.0%
GACGTCATCTTTCCGGTTAC+CGG + chr4_3:59504686-59504705 None:intergenic 50.0%
TTCAGAAACCGAGCTGGACT+TGG + chr4_3:59504748-59504767 None:intergenic 50.0%
GACTTCTTCAGAAACCGAGC+TGG + chr4_3:59504754-59504773 None:intergenic 50.0%
CTTATATGCTTCGCCGGAGA+CGG + chr4_3:59504859-59504878 None:intergenic 50.0%
GTCTCCGGCGAAGCATATAA+GGG - chr4_3:59504858-59504877 Msa0651940:intron 50.0%
ACAGCCCTTATATGCTTCGC+CGG + chr4_3:59504865-59504884 None:intergenic 50.0%
!! CTGTGTTGGCTAGGAGACAA+GGG - chr4_3:59504881-59504900 Msa0651940:intron 50.0%
TTGGAGGTTGGGGAAGAAGT+GGG - chr4_3:59504997-59505016 Msa0651940:CDS 50.0%
!!! AAGTGGGTAGGGGGCATTTT+GGG - chr4_3:59505013-59505032 Msa0651940:intron 50.0%
TGCTCACTTCTGTGGTGAGA+CGG + chr4_3:59506470-59506489 None:intergenic 50.0%
CATGTGGCTAGTAAGTGGCA+AGG + chr4_3:59506555-59506574 None:intergenic 50.0%
AGATGATGCCAAGGCTGTCA+TGG - chr4_3:59506610-59506629 Msa0651940:intron 50.0%
GCACAGAGATCTTAAGCCTG+AGG - chr4_3:59506679-59506698 Msa0651940:intron 50.0%
ATCGCTTTATGTCGCTGGCA+CGG - chr4_3:59506894-59506913 Msa0651940:CDS 50.0%
!! TCAGCTAGTCTTCAGCTGAC+TGG - chr4_3:59506977-59506996 Msa0651940:intron 50.0%
AGTCTTCAGCTGACTGGACT+TGG - chr4_3:59506983-59507002 Msa0651940:intron 50.0%
ACGGGACAAAACAGGTAGCA+AGG - chr4_3:59507153-59507172 Msa0651940:intron 50.0%
!! GTTTCTAGCGTCCAAGTGAC+CGG + chr4_3:59507369-59507388 None:intergenic 50.0%
AGTCTTCAGCTGACTGGACA+TGG + chr4_3:59507509-59507528 None:intergenic 50.0%
! TATGTGGCAGTCGCCCATTT+TGG - chr4_3:59508036-59508055 Msa0651940:intron 50.0%
! ATGTGGCAGTCGCCCATTTT+GGG - chr4_3:59508037-59508056 Msa0651940:intron 50.0%
GATTCCGTTCGAGCCCAAAA+TGG + chr4_3:59508053-59508072 None:intergenic 50.0%
! TTTTGGGCTCGAACGGAATC+AGG - chr4_3:59508053-59508072 Msa0651940:intron 50.0%
GCAGCAGATATTCGTTTCCG+AGG + chr4_3:59508185-59508204 None:intergenic 50.0%
TTGTGCTTGCAGGTCATCCT+TGG - chr4_3:59508287-59508306 Msa0651940:intron 50.0%
GAGATCGTCATCCTTGCGTA+AGG - chr4_3:59508378-59508397 Msa0651940:intron 50.0%
CTTGCGTAAGGCTGCCTTAA+GGG - chr4_3:59508390-59508409 Msa0651940:intron 50.0%
ACTGGATACGCCACACAGAT+GGG - chr4_3:59509221-59509240 Msa0651940:five_prime_UTR 50.0%
AGCTTAGCTTCCCATCTGTG+TGG + chr4_3:59509234-59509253 None:intergenic 50.0%
ATCTAGCCGAAGCCTTCCAA+AGG - chr4_3:59509285-59509304 Msa0651940:five_prime_UTR 50.0%
GGGGTCTGTGGGATTTGTGT+TGG + chr4_3:59504649-59504668 None:intergenic 55.0%
AGGGACTTTGTGGGGTCTGT+GGG + chr4_3:59504660-59504679 None:intergenic 55.0%
TAGGGACTTTGTGGGGTCTG+TGG + chr4_3:59504661-59504680 None:intergenic 55.0%
ACCCCACAAAGTCCCTACAC+CGG - chr4_3:59504664-59504683 Msa0651940:intron 55.0%
ACCGGTGTAGGGACTTTGTG+GGG + chr4_3:59504668-59504687 None:intergenic 55.0%
CGGCGATGACGTCATCTTTC+CGG + chr4_3:59504693-59504712 None:intergenic 55.0%
CGGAAAGATGACGTCATCGC+CGG - chr4_3:59504691-59504710 Msa0651940:intron 55.0%
TTCCGGCTTCTTTCACTCGC+CGG + chr4_3:59504796-59504815 None:intergenic 55.0%
CGTCTCCGGCGAAGCATATA+AGG - chr4_3:59504857-59504876 Msa0651940:intron 55.0%
!! GCTGTGTTGGCTAGGAGACA+AGG - chr4_3:59504880-59504899 Msa0651940:intron 55.0%
GGCTAGGAGACAAGGGAAGA+AGG - chr4_3:59504888-59504907 Msa0651940:intron 55.0%
ACAAGGGAAGAAGGAAGCCG+CGG - chr4_3:59504897-59504916 Msa0651940:intron 55.0%
ATACCGGAAGACGGAGAGGA+GGG - chr4_3:59504922-59504941 Msa0651940:intron 55.0%
GTTGGAGGTTGGGGAAGAAG+TGG - chr4_3:59504996-59505015 Msa0651940:CDS 55.0%
AGGTTGGGGAAGAAGTGGGT+AGG - chr4_3:59505001-59505020 Msa0651940:intron 55.0%
GGTTGGGGAAGAAGTGGGTA+GGG - chr4_3:59505002-59505021 Msa0651940:intron 55.0%
GTTGGGGAAGAAGTGGGTAG+GGG - chr4_3:59505003-59505022 Msa0651940:intron 55.0%
TTGGGGAAGAAGTGGGTAGG+GGG - chr4_3:59505004-59505023 Msa0651940:intron 55.0%
!!! GAAGTGGGTAGGGGGCATTT+TGG - chr4_3:59505012-59505031 Msa0651940:intron 55.0%
TGTGGTGAGACGGTGCATGT+GGG + chr4_3:59506460-59506479 None:intergenic 55.0%
CTCACCACAGAAGTGAGCAG+CGG - chr4_3:59506471-59506490 Msa0651940:intron 55.0%
GGCCATCATAGCCGTGTTAG+CGG - chr4_3:59506492-59506511 Msa0651940:intron 55.0%
TCGCTTTATGTCGCTGGCAC+GGG - chr4_3:59506895-59506914 Msa0651940:CDS 55.0%
GTCATGGGACGGGACAAAAC+AGG - chr4_3:59507145-59507164 Msa0651940:intron 55.0%
!! GCTTCCTTGTCAGAGGTGCT+AGG - chr4_3:59507391-59507410 Msa0651940:intron 55.0%
!! GCTTCCTTGTCAGAGGTGCT+AGG - chr4_3:59507391-59507410 Msa0651940:intron 55.0%
! TCGCCCATTTTGGGCTCGAA+CGG - chr4_3:59508046-59508065 Msa0651940:intron 55.0%
! GCTGATCCAGGCTTTGACGA+AGG - chr4_3:59508098-59508117 Msa0651940:intron 55.0%
CCTTAAGGCAGCCTTACGCA+AGG + chr4_3:59508392-59508411 None:intergenic 55.0%
CCTTGCGTAAGGCTGCCTTA+AGG - chr4_3:59508389-59508408 Msa0651940:intron 55.0%
GACTGGATACGCCACACAGA+TGG - chr4_3:59509220-59509239 Msa0651940:five_prime_UTR 55.0%
CTTGCGATGGCTTCAGATGC+CGG + chr4_3:59509420-59509439 None:intergenic 55.0%
CTTTCACTCGCCGGAGTCGA+CGG + chr4_3:59504787-59504806 None:intergenic 60.0%
CTCCGGCGAGTGAAAGAAGC+CGG - chr4_3:59504791-59504810 Msa0651940:CDS 60.0%
! CGACGCCGAGGAGGTTTTTC+CGG - chr4_3:59504818-59504837 Msa0651940:CDS 60.0%
GGTCGCCGGAAAAACCTCCT+CGG + chr4_3:59504826-59504845 None:intergenic 60.0%
ATATGCTTCGCCGGAGACGG+CGG + chr4_3:59504856-59504875 None:intergenic 60.0%
GATACCGGAAGACGGAGAGG+AGG - chr4_3:59504921-59504940 Msa0651940:intron 60.0%
TGGTGAGACGGTGCATGTGG+GGG + chr4_3:59506458-59506477 None:intergenic 60.0%
GTGGTGAGACGGTGCATGTG+GGG + chr4_3:59506459-59506478 None:intergenic 60.0%
CTGTGGTGAGACGGTGCATG+TGG + chr4_3:59506461-59506480 None:intergenic 60.0%
ATGGCCGCTGCTCACTTCTG+TGG + chr4_3:59506478-59506497 None:intergenic 60.0%
CGCCGCTAACACGGCTATGA+TGG + chr4_3:59506497-59506516 None:intergenic 60.0%
AGCGTCCAAGTGACCGGACA+TGG + chr4_3:59507436-59507455 None:intergenic 60.0%
CAGGGACCTTCGTCAAAGCC+TGG + chr4_3:59508107-59508126 None:intergenic 60.0%
! CAGGCTTTGACGAAGGTCCC+TGG - chr4_3:59508105-59508124 Msa0651940:intron 60.0%
!! TCCGTCCACTCCGTCGACTC+CGG - chr4_3:59504774-59504793 Msa0651940:CDS 65.0%
! ACCTCCTCGGCGTCGAGTTC+CGG + chr4_3:59504813-59504832 None:intergenic 65.0%
ACCCTTTCCACCGCCGTCTC+CGG - chr4_3:59504843-59504862 Msa0651940:CDS 65.0%
GAAGGAAGCCGCGGCGATAC+CGG - chr4_3:59504906-59504925 Msa0651940:intron 65.0%
TCCGTCTTCCGGTATCGCCG+CGG + chr4_3:59504917-59504936 None:intergenic 65.0%
GGCGATACCGGAAGACGGAG+AGG - chr4_3:59504918-59504937 Msa0651940:intron 65.0%
GCACCCTCCTCTCCGTCTTC+CGG + chr4_3:59504928-59504947 None:intergenic 65.0%
! GAAGACGGAGAGGAGGGTGC+CGG - chr4_3:59504928-59504947 Msa0651940:intron 65.0%
!! AAGACGGAGAGGAGGGTGCC+GGG - chr4_3:59504929-59504948 Msa0651940:intron 65.0%
!! AGAGGAGGGTGCCGGGGATT+TGG - chr4_3:59504936-59504955 Msa0651940:intron 65.0%
! CCACTGCACTGCGCCGATAG+CGG + chr4_3:59506428-59506447 None:intergenic 65.0%
CGCTATCGGCGCAGTGCAGT+GGG - chr4_3:59506426-59506445 Msa0651940:intron 65.0%
TGAGACGGTGCATGTGGGGG+AGG + chr4_3:59506455-59506474 None:intergenic 65.0%
GCCGGAGTCGACGGAGTGGA+CGG + chr4_3:59504778-59504797 None:intergenic 70.0%
ACTCGCCGGAGTCGACGGAG+TGG + chr4_3:59504782-59504801 None:intergenic 70.0%
GAAGCCGGAACTCGACGCCG+AGG - chr4_3:59504806-59504825 Msa0651940:CDS 70.0%
ACGGCGGTGGAAAGGGTCGC+CGG + chr4_3:59504840-59504859 None:intergenic 70.0%
GCCGGAGACGGCGGTGGAAA+GGG + chr4_3:59504847-59504866 None:intergenic 70.0%
GCCGCGGCGATACCGGAAGA+CGG - chr4_3:59504913-59504932 Msa0651940:intron 70.0%
!! AGACGGAGAGGAGGGTGCCG+GGG - chr4_3:59504930-59504949 Msa0651940:intron 70.0%
CCGCTATCGGCGCAGTGCAG+TGG - chr4_3:59506425-59506444 Msa0651940:intron 70.0%
GCCGGAACTCGACGCCGAGG+AGG - chr4_3:59504809-59504828 Msa0651940:CDS 75.0%
CGCCGGAGACGGCGGTGGAA+AGG + chr4_3:59504848-59504867 None:intergenic 75.0%
TGCTTCGCCGGAGACGGCGG+TGG + chr4_3:59504853-59504872 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 59503984 59509739 59503984 ID=Msa0651940;Name=Msa0651940
chr4_3 mRNA 59503984 59509739 59503984 ID=Msa0651940-mRNA-1;Parent=Msa0651940;Name=Msa0651940-mRNA-1;_AED=0.12;_eAED=0.12;_QI=596|0.55|0.8|0.8|0.55|0.7|10|421|505
chr4_3 exon 59503984 59504548 59503984 ID=Msa0651940-mRNA-1:exon:15961;Parent=Msa0651940-mRNA-1
chr4_3 exon 59504698 59504865 59504698 ID=Msa0651940-mRNA-1:exon:15960;Parent=Msa0651940-mRNA-1
chr4_3 exon 59504956 59505018 59504956 ID=Msa0651940-mRNA-1:exon:15959;Parent=Msa0651940-mRNA-1
chr4_3 exon 59505100 59505207 59505100 ID=Msa0651940-mRNA-1:exon:15958;Parent=Msa0651940-mRNA-1
chr4_3 exon 59505312 59505424 59505312 ID=Msa0651940-mRNA-1:exon:15957;Parent=Msa0651940-mRNA-1
chr4_3 exon 59505508 59505804 59505508 ID=Msa0651940-mRNA-1:exon:15956;Parent=Msa0651940-mRNA-1
chr4_3 exon 59506880 59506917 59506880 ID=Msa0651940-mRNA-1:exon:15955;Parent=Msa0651940-mRNA-1
chr4_3 exon 59507333 59507374 59507333 ID=Msa0651940-mRNA-1:exon:15954;Parent=Msa0651940-mRNA-1
chr4_3 exon 59508480 59508490 59508480 ID=Msa0651940-mRNA-1:exon:15953;Parent=Msa0651940-mRNA-1
chr4_3 exon 59508610 59509739 59508610 ID=Msa0651940-mRNA-1:exon:15952;Parent=Msa0651940-mRNA-1
chr4_3 five_prime_UTR 59509144 59509739 59509144 ID=Msa0651940-mRNA-1:five_prime_utr;Parent=Msa0651940-mRNA-1
chr4_3 CDS 59508610 59509143 59508610 ID=Msa0651940-mRNA-1:cds;Parent=Msa0651940-mRNA-1
chr4_3 CDS 59508480 59508490 59508480 ID=Msa0651940-mRNA-1:cds;Parent=Msa0651940-mRNA-1
chr4_3 CDS 59507333 59507374 59507333 ID=Msa0651940-mRNA-1:cds;Parent=Msa0651940-mRNA-1
chr4_3 CDS 59506880 59506917 59506880 ID=Msa0651940-mRNA-1:cds;Parent=Msa0651940-mRNA-1
chr4_3 CDS 59505508 59505804 59505508 ID=Msa0651940-mRNA-1:cds;Parent=Msa0651940-mRNA-1
chr4_3 CDS 59505312 59505424 59505312 ID=Msa0651940-mRNA-1:cds;Parent=Msa0651940-mRNA-1
chr4_3 CDS 59505100 59505207 59505100 ID=Msa0651940-mRNA-1:cds;Parent=Msa0651940-mRNA-1
chr4_3 CDS 59504956 59505018 59504956 ID=Msa0651940-mRNA-1:cds;Parent=Msa0651940-mRNA-1
chr4_3 CDS 59504698 59504865 59504698 ID=Msa0651940-mRNA-1:cds;Parent=Msa0651940-mRNA-1
chr4_3 CDS 59504405 59504548 59504405 ID=Msa0651940-mRNA-1:cds;Parent=Msa0651940-mRNA-1
chr4_3 three_prime_UTR 59503984 59504404 59503984 ID=Msa0651940-mRNA-1:three_prime_utr;Parent=Msa0651940-mRNA-1
Gene Sequence

>Msa0651940

ATGGGGGGTTGCACTTCAAAGCCACAGAAACCAAACCCATATGCCCTTAGAGAAACGGAAACTGACCCAACACAAATCCCACAGACCCCACAAAGTCCCTACACCGGTAACCGGAAAGATGACGTCATCGCCGGAAAAAAGTCTCCGTTTTTTCCGTTTTACAGTCCAAGTCCAGCTCGGTTTCTGAAGAAGTCTCCGTCCACTCCGTCGACTCCGGCGAGTGAAAGAAGCCGGAACTCGACGCCGAGGAGGTTTTTCCGGCGACCCTTTCCACCGCCGTCTCCGGCGAAGCATATAAGGGCTGTGTTGGCTAGGAGACAAGGGAAGAAGGAAGCCGCGGCGATACCGGAAGACGGAGAGGAGGGTGCCGGGGATTTGGACAAGAGATTTGGGTTTTCAAAGGATTTTAGTAGTAAGTTGGAGGTTGGGGAAGAAGTGGGTAGGGGGCATTTTGGGTATACTTCTGCTGCTAAATTCAAAAAGGGTGAGTTTAAGGGTCAACAAGTGGCTGTGAAAGTGATTCCTAAAGCAAAGGCTTGGAATTCGTTATGTGAAGGGGGAGAGCTCTTAGACATGATACTATCAAGCCTTTGCCTCTGCATCATTCATGTGTTGCAGGGACATGATGAAAGGCTTAATGACATTGTTGGAAGTGCATATTATGTGGCTCCTGAAGTTCTCCATAGATCTTACAGTACAGAAGCTGATGTGTGGAGTATAGGTGTGATAGCATATATTCTATTATGTGGCAGTCGCCCATTTTGGGCTCGAACGGAATCAGGCATTTTTAGGGCAGTTTTGAAAGCTGATCCAGGCTTTGACGAAGGTCCCTGGCCATCCTTATCTTCAGAAGCAAAAGATTTTGTCAAACGCCTACTAAATAAGGACCCTCGGAAACGAATATCTGCTGCTCAGGCTCTGAGTCATCCTTGGATACGTAATTACAATGATGTAAAAGTTCCGCTTGATATTTTAATATTCAAACTCATGAAGACATATATGAGATCGTCATCCTTGCGTAAGGCTGCCTTAAGGGCTTTATCCAAGACTTTAACTGCTGATGAACTCTATTATCTGAGGGAGCAATTTGCGTTATTGGAACCAAGCAAAAACGGCAGCATATCCTTGGAGAACATTAACAAGGCTTTGAAGAAATATGCAACAGATGCCATGAAAGAGTCTCGTATCACTGATTTTCTTTCCTCGCTGAGTTCATTACAATATAGAAGGATGGATTTTGAAGAATTTTGTGCGGCTGCATTAAGTGTGCATCAACTCGAAGCTCTTGATCGTTGGGAACAACATGCTCGCTGTGCATATGAACTTTTTGAGAAAGATGGAAACAGGGCAATTGTCATTGAAGAACTAGCTTCAGAACTTGGACTTGGTCCATCGATCCCTGTTCATGTTGTTCTTCATGACTGGATACGCCACACAGATGGGAAGCTAAGCTTTCTTGGGTTTGTCAAATTATTGCATGGTGTATCTAGCCGAAGCCTTCCAAAGGTTCAGTTATGA
Protein sequence

>Msa0651940

MGGCTSKPQKPNPYALRETETDPTQIPQTPQSPYTGNRKDDVIAGKKSPFFPFYSPSPARFLKKSPSTPSTPASERSRNSTPRRFFRRPFPPPSPAKHIRAVLARRQGKKEAAAIPEDGEEGAGDLDKRFGFSKDFSSKLEVGEEVGRGHFGYTSAAKFKKGEFKGQQVAVKVIPKAKAWNSLCEGGELLDMILSSLCLCIIHVLQGHDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPGFDEGPWPSLSSEAKDFVKRLLNKDPRKRISAAQALSHPWIRNYNDVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLENINKALKKYATDAMKESRITDFLSSLSSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLPKVQL*