Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652500 | XP_013456909.1 | 92.982 | 171 | 12 | 0 | 154 | 324 | 272 | 442 | 5.84e-99 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652500 | sp|Q9S7L2|MYB98_ARATH | 63.514 | 74 | 27 | 0 | 154 | 227 | 268 | 341 | 3.28e-23 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652500 | A0A072UYL7 | 92.982 | 171 | 12 | 0 | 154 | 324 | 272 | 442 | 2.79e-99 | 309 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0652500 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652500 | MtrunA17_Chr7g0233151 | 73.529 | 170 | 45 | 0 | 155 | 324 | 3 | 172 | 2.24e-86 | 257 |
| Msa0652500 | MtrunA17_Chr4g0046171 | 92.199 | 141 | 11 | 0 | 184 | 324 | 1 | 141 | 3.33e-83 | 248 |
| Msa0652500 | MtrunA17_Chr7g0228481 | 68.306 | 183 | 50 | 1 | 142 | 324 | 258 | 432 | 5.82e-81 | 252 |
| Msa0652500 | MtrunA17_Chr7g0228531 | 67.760 | 183 | 51 | 1 | 142 | 324 | 258 | 432 | 2.14e-80 | 251 |
| Msa0652500 | MtrunA17_Chr7g0228401 | 53.846 | 169 | 61 | 4 | 154 | 307 | 330 | 496 | 3.48e-46 | 163 |
| Msa0652500 | MtrunA17_Chr1g0177901 | 51.176 | 170 | 62 | 4 | 154 | 308 | 45 | 208 | 1.48e-41 | 143 |
| Msa0652500 | MtrunA17_Chr7g0233061 | 52.419 | 124 | 46 | 2 | 154 | 275 | 229 | 341 | 1.59e-29 | 115 |
| Msa0652500 | MtrunA17_Chr3g0117511 | 68.919 | 74 | 23 | 0 | 154 | 227 | 234 | 307 | 2.04e-26 | 108 |
| Msa0652500 | MtrunA17_Chr3g0104491 | 54.167 | 96 | 34 | 4 | 145 | 230 | 4 | 99 | 2.78e-25 | 102 |
| Msa0652500 | MtrunA17_Chr4g0058991 | 64.865 | 74 | 26 | 0 | 154 | 227 | 260 | 333 | 3.68e-25 | 105 |
| Msa0652500 | MtrunA17_Chr5g0429661 | 59.459 | 74 | 28 | 1 | 154 | 225 | 173 | 246 | 2.35e-22 | 95.9 |
| Msa0652500 | MtrunA17_Chr5g0421201 | 53.409 | 88 | 38 | 1 | 155 | 242 | 12 | 96 | 2.60e-21 | 89.4 |
| Msa0652500 | MtrunA17_Chr4g0008551 | 57.143 | 49 | 21 | 0 | 154 | 202 | 89 | 137 | 3.75e-13 | 69.3 |
| Msa0652500 | MtrunA17_Chr7g0238631 | 59.184 | 49 | 20 | 0 | 154 | 202 | 164 | 212 | 8.86e-13 | 68.9 |
| Msa0652500 | MtrunA17_Chr1g0157731 | 56.250 | 48 | 21 | 0 | 155 | 202 | 143 | 190 | 1.92e-12 | 68.2 |
| Msa0652500 | MtrunA17_Chr3g0139671 | 54.167 | 48 | 22 | 0 | 155 | 202 | 137 | 184 | 2.51e-12 | 67.8 |
| Msa0652500 | MtrunA17_Chr2g0291801 | 70.000 | 40 | 12 | 0 | 1 | 40 | 21 | 60 | 1.29e-11 | 60.1 |
| Msa0652500 | MtrunA17_Chr4g0053431 | 56.522 | 46 | 20 | 0 | 157 | 202 | 59 | 104 | 1.91e-11 | 63.5 |
| Msa0652500 | MtrunA17_Chr5g0401731 | 56.522 | 46 | 20 | 0 | 157 | 202 | 69 | 114 | 2.73e-11 | 63.5 |
| Msa0652500 | MtrunA17_Chr5g0437321 | 56.522 | 46 | 20 | 0 | 154 | 199 | 70 | 115 | 8.07e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652500 | AT4G18770.1 | 63.514 | 74 | 27 | 0 | 154 | 227 | 268 | 341 | 3.33e-24 | 102 |
| Msa0652500 | AT5G11050.1 | 41.045 | 134 | 60 | 3 | 154 | 270 | 156 | 287 | 1.45e-22 | 97.8 |
| Msa0652500 | AT5G40360.1 | 57.333 | 75 | 30 | 1 | 154 | 226 | 209 | 283 | 2.71e-20 | 90.5 |
| Msa0652500 | AT3G27785.1 | 70.370 | 54 | 16 | 0 | 154 | 207 | 240 | 293 | 1.40e-19 | 89.4 |
| Msa0652500 | AT5G58850.1 | 63.934 | 61 | 22 | 0 | 154 | 214 | 156 | 216 | 1.52e-19 | 89.0 |
| Msa0652500 | AT2G25230.1 | 54.286 | 70 | 32 | 0 | 154 | 223 | 77 | 146 | 3.09e-18 | 82.8 |
| Msa0652500 | AT5G40430.1 | 45.205 | 73 | 40 | 0 | 154 | 226 | 104 | 176 | 9.60e-15 | 73.2 |
| Msa0652500 | AT3G55730.1 | 53.125 | 64 | 29 | 1 | 148 | 211 | 102 | 164 | 2.86e-13 | 70.5 |
| Msa0652500 | AT4G32730.5 | 56.250 | 48 | 21 | 0 | 155 | 202 | 139 | 186 | 5.74e-13 | 70.1 |
| Msa0652500 | AT4G32730.4 | 56.250 | 48 | 21 | 0 | 155 | 202 | 139 | 186 | 5.74e-13 | 70.1 |
| Msa0652500 | AT4G32730.3 | 56.250 | 48 | 21 | 0 | 155 | 202 | 139 | 186 | 5.74e-13 | 70.1 |
| Msa0652500 | AT4G32730.2 | 56.250 | 48 | 21 | 0 | 155 | 202 | 139 | 186 | 5.74e-13 | 70.1 |
| Msa0652500 | AT4G38620.1 | 34.545 | 110 | 69 | 1 | 154 | 263 | 66 | 172 | 6.22e-13 | 68.6 |
| Msa0652500 | AT5G02320.1 | 58.696 | 46 | 19 | 0 | 154 | 199 | 178 | 223 | 2.65e-12 | 67.8 |
| Msa0652500 | AT5G02320.2 | 58.696 | 46 | 19 | 0 | 154 | 199 | 178 | 223 | 2.65e-12 | 67.8 |
| Msa0652500 | AT5G02320.3 | 58.696 | 46 | 19 | 0 | 154 | 199 | 118 | 163 | 3.13e-12 | 67.4 |
| Msa0652500 | AT3G09370.3 | 58.333 | 48 | 20 | 0 | 155 | 202 | 195 | 242 | 4.70e-12 | 67.0 |
| Msa0652500 | AT3G09370.2 | 62.222 | 45 | 17 | 0 | 155 | 199 | 187 | 231 | 4.91e-12 | 67.0 |
| Msa0652500 | AT1G57560.1 | 28.966 | 145 | 87 | 3 | 154 | 290 | 66 | 202 | 4.98e-12 | 66.2 |
| Msa0652500 | AT3G09370.1 | 62.222 | 45 | 17 | 0 | 155 | 199 | 182 | 226 | 5.30e-12 | 67.0 |
| Msa0652500 | AT4G32730.1 | 56.250 | 48 | 21 | 0 | 155 | 202 | 139 | 186 | 6.33e-12 | 67.0 |
| Msa0652500 | AT3G09230.1 | 59.184 | 49 | 20 | 0 | 155 | 203 | 107 | 155 | 1.03e-11 | 65.9 |
| Msa0652500 | AT5G11510.2 | 50.000 | 48 | 24 | 0 | 155 | 202 | 133 | 180 | 4.94e-11 | 64.3 |
| Msa0652500 | AT5G11510.5 | 50.000 | 48 | 24 | 0 | 155 | 202 | 133 | 180 | 5.06e-11 | 64.3 |
| Msa0652500 | AT5G11510.3 | 50.000 | 48 | 24 | 0 | 155 | 202 | 133 | 180 | 5.51e-11 | 64.3 |
| Msa0652500 | AT5G11510.1 | 50.000 | 48 | 24 | 0 | 155 | 202 | 133 | 180 | 5.51e-11 | 64.3 |
| Msa0652500 | AT5G11510.4 | 50.000 | 48 | 24 | 0 | 155 | 202 | 133 | 180 | 5.51e-11 | 64.3 |
| Msa0652500 | AT4G00540.2 | 62.222 | 45 | 17 | 0 | 155 | 199 | 158 | 202 | 6.16e-11 | 63.5 |
| Msa0652500 | AT4G00540.1 | 62.222 | 45 | 17 | 0 | 155 | 199 | 156 | 200 | 7.11e-11 | 63.2 |
| Msa0652500 | AT4G09460.1 | 28.571 | 154 | 81 | 4 | 154 | 307 | 66 | 190 | 9.03e-11 | 61.6 |
Find 87 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTGAGCTTTCAAAGTT+TGG | 0.135302 | 4_3:+60217094 | None:intergenic |
| TCTACGAGCATGATGAAATT+TGG | 0.151851 | 4_3:-60217124 | Msa0652500:CDS |
| TTAAACAGGCTGCTATTAAT+TGG | 0.152318 | 4_3:-60219499 | Msa0652500:CDS |
| CCTTAGTGGGTAACCTATTA+TGG | 0.165079 | 4_3:+60219798 | None:intergenic |
| TTTGGAAACAATTCCATAAT+AGG | 0.224897 | 4_3:-60219811 | Msa0652500:CDS |
| ACATCAAACCAAAGCAAATT+TGG | 0.226916 | 4_3:+60219008 | None:intergenic |
| GATTCTTTCTCTTAGCCTTA+TGG | 0.252535 | 4_3:+60217236 | None:intergenic |
| CTTGTTTGTTTGTTTGTATC+AGG | 0.263341 | 4_3:-60218906 | Msa0652500:intron |
| AAATCAATTTCCTGCTTCAT+AGG | 0.287051 | 4_3:+60216917 | None:intergenic |
| TACCCATCAATTTCCTCCTT+TGG | 0.293705 | 4_3:+60217043 | None:intergenic |
| ACGACAATGAGTTGTGATTT+TGG | 0.300595 | 4_3:-60216971 | Msa0652500:CDS |
| GTGGTTCTTGATTGAGTTCT+CGG | 0.303000 | 4_3:+60217279 | None:intergenic |
| TATGATTGTAGAAGGATTCA+TGG | 0.325747 | 4_3:-60217390 | Msa0652500:intron |
| TCTCCATTATCTCTTCCATT+TGG | 0.334982 | 4_3:-60219544 | Msa0652500:CDS |
| TCTCTGAGCTTTCAAAGTTT+GGG | 0.346767 | 4_3:+60217095 | None:intergenic |
| TGATGCTAAGGAAGCCAAAA+AGG | 0.352048 | 4_3:-60217161 | Msa0652500:CDS |
| GATGGAATGGCAAGCGGATC+TGG | 0.357048 | 4_3:-60216995 | Msa0652500:CDS |
| GCTTCTGAAGTTGGATTAAT+CGG | 0.358305 | 4_3:-60219079 | Msa0652500:CDS |
| CTACGAGCATGATGAAATTT+GGG | 0.360944 | 4_3:-60217123 | Msa0652500:CDS |
| AAGGATAATCTAAGCTTTAG+AGG | 0.381928 | 4_3:-60219779 | Msa0652500:CDS |
| ATCGAAGCTCATAAGATAGT+TGG | 0.382042 | 4_3:-60217343 | Msa0652500:CDS |
| GAAGCAGGAAATTGATTTCA+TGG | 0.382589 | 4_3:-60216912 | Msa0652500:CDS |
| TAAACAGGCTGCTATTAATT+GGG | 0.385136 | 4_3:-60219498 | Msa0652500:CDS |
| ATTTGGCAAATTCTATGATT+CGG | 0.386653 | 4_3:+60219025 | None:intergenic |
| ACTACTCTTGAAATACATAA+TGG | 0.390329 | 4_3:-60217191 | Msa0652500:CDS |
| AGAATTTGCCAAATTTGCTT+TGG | 0.396418 | 4_3:-60219016 | Msa0652500:CDS |
| ATTCCAAATGGAAGAGATAA+TGG | 0.399044 | 4_3:+60219541 | None:intergenic |
| CGCCACCAAGCGCCGCCATA+AGG | 0.400609 | 4_3:-60217251 | Msa0652500:CDS |
| GTGAGAGGTTGGGAGTGATA+TGG | 0.406525 | 4_3:-60219568 | Msa0652500:CDS |
| GAATGCAATGATATTTAAAC+AGG | 0.417320 | 4_3:-60219513 | Msa0652500:CDS |
| CCATTAGTTTCATCTTGTAA+TGG | 0.424170 | 4_3:-60218938 | Msa0652500:CDS |
| TGATAGGAGGCTTCTGAAGT+TGG | 0.429973 | 4_3:-60219088 | Msa0652500:intron |
| TCTCTTCCATTTGGAATGCT+AGG | 0.432384 | 4_3:-60219535 | Msa0652500:CDS |
| CTTAGCCTTATGGCGGCGCT+TGG | 0.439433 | 4_3:+60217246 | None:intergenic |
| TCGTCAACATTGAGCATCAT+TGG | 0.453386 | 4_3:+60217016 | None:intergenic |
| CCATTACAAGATGAAACTAA+TGG | 0.453805 | 4_3:+60218938 | None:intergenic |
| TGAGAATGTCGGAGTTGGTT+TGG | 0.454195 | 4_3:-60219829 | None:intergenic |
| AAAGCTTAGATTATCCTTAG+TGG | 0.458907 | 4_3:+60219784 | None:intergenic |
| TCCTGCTTCATAGGAACCTC+GGG | 0.461845 | 4_3:+60216926 | None:intergenic |
| AATCCAAAGGAGGAAATTGA+TGG | 0.465372 | 4_3:-60217046 | Msa0652500:CDS |
| TCGAAGCTCATAAGATAGTT+GGG | 0.466770 | 4_3:-60217342 | Msa0652500:CDS |
| TAAGGCTAAGAGAAAGAATC+GGG | 0.468527 | 4_3:-60217233 | Msa0652500:CDS |
| TCCCGAGGTTCCTATGAAGC+AGG | 0.470750 | 4_3:-60216927 | Msa0652500:CDS |
| TAATCGGCTGCGAGGAATGC+GGG | 0.483466 | 4_3:-60219063 | Msa0652500:CDS |
| GGCTGCTATTAATTGGGAAA+AGG | 0.485326 | 4_3:-60219492 | Msa0652500:intron |
| AGCCTTATGGCGGCGCTTGG+TGG | 0.487263 | 4_3:+60217249 | None:intergenic |
| TGCATTCCTAGCATTCCAAA+TGG | 0.488521 | 4_3:+60219529 | None:intergenic |
| CCATAATAGGTTACCCACTA+AGG | 0.490396 | 4_3:-60219798 | Msa0652500:CDS |
| TGAGAGGTTGGGAGTGATAT+GGG | 0.491705 | 4_3:-60219567 | Msa0652500:CDS |
| TTATATTGTGTTGGTGGCTG+TGG | 0.501099 | 4_3:-60219737 | Msa0652500:intron |
| TGAGTTTAGAAGCTTCAGTA+AGG | 0.502760 | 4_3:-60218969 | Msa0652500:CDS |
| TAAAACCGTTCGTGAGAGGT+TGG | 0.503953 | 4_3:-60219579 | Msa0652500:CDS |
| ATAAGGCTAAGAGAAAGAAT+CGG | 0.504503 | 4_3:-60217234 | Msa0652500:CDS |
| AATTCATCGTTATATTGTGT+TGG | 0.508384 | 4_3:-60219746 | Msa0652500:CDS |
| TCATCGTTATATTGTGTTGG+TGG | 0.517205 | 4_3:-60219743 | Msa0652500:CDS |
| ATGATCTATAGAAACCCTTA+AGG | 0.519903 | 4_3:-60216887 | None:intergenic |
| AATCGGGGTAATAGTTCAAA+GGG | 0.520790 | 4_3:-60217217 | Msa0652500:CDS |
| TTCCTGCTTCATAGGAACCT+CGG | 0.522707 | 4_3:+60216925 | None:intergenic |
| AAAACCGTTCGTGAGAGGTT+GGG | 0.528613 | 4_3:-60219578 | Msa0652500:CDS |
| GAGCATCTCATTATGTTCAA+AGG | 0.529738 | 4_3:-60219617 | Msa0652500:CDS |
| AAGCTTAGATTATCCTTAGT+GGG | 0.535162 | 4_3:+60219785 | None:intergenic |
| GAATCGGGGTAATAGTTCAA+AGG | 0.535621 | 4_3:-60217218 | Msa0652500:CDS |
| AATGGAAGTCAATGATGCTA+AGG | 0.540934 | 4_3:-60217173 | Msa0652500:CDS |
| TCTGTTGAGAATGTCGGAGT+TGG | 0.556282 | 4_3:-60219834 | None:intergenic |
| TGAAGGTTTGGTTAATCCAA+AGG | 0.556363 | 4_3:-60217059 | Msa0652500:CDS |
| GAAATTGCAAAGAGAATGCA+AGG | 0.557557 | 4_3:-60217307 | Msa0652500:CDS |
| AAGCAGGAAATTGATTTCAT+GGG | 0.557632 | 4_3:-60216911 | Msa0652500:CDS |
| GGCGCTTGGTGGCGTTCCAG+TGG | 0.560470 | 4_3:+60217260 | None:intergenic |
| ATAAGATAGTTGGGAACAAG+TGG | 0.569486 | 4_3:-60217333 | Msa0652500:CDS |
| AGAACTCAATCAAGAACCAC+TGG | 0.570688 | 4_3:-60217276 | Msa0652500:CDS |
| GAGTTTAGAAGCTTCAGTAA+GGG | 0.590743 | 4_3:-60218968 | Msa0652500:CDS |
| GGATTCATGGACCGAAGAAG+AGG | 0.600796 | 4_3:-60217377 | Msa0652500:CDS |
| ATCTAAGCTTTAGAGGTGAG+AGG | 0.606429 | 4_3:-60219772 | Msa0652500:CDS |
| CACTCCCAACCTCTCACGAA+CGG | 0.609388 | 4_3:+60219574 | None:intergenic |
| ATCCAAAGGAGGAAATTGAT+GGG | 0.609399 | 4_3:-60217045 | Msa0652500:CDS |
| TAGGTAAAACCGTTCGTGAG+AGG | 0.610860 | 4_3:-60219583 | Msa0652500:CDS |
| GCTCAATGTTGACGATGGAA+TGG | 0.614417 | 4_3:-60217008 | Msa0652500:CDS |
| TCTTTCTCTTAGCCTTATGG+CGG | 0.638566 | 4_3:+60217239 | None:intergenic |
| TTCAAAGGTCTAGTTGCAGT+AGG | 0.648544 | 4_3:-60219602 | Msa0652500:CDS |
| TTAATCGGCTGCGAGGAATG+CGG | 0.653087 | 4_3:-60219064 | Msa0652500:CDS |
| GTTGACGATGGAATGGCAAG+CGG | 0.654088 | 4_3:-60217001 | Msa0652500:CDS |
| AGGTTTGGTTAATCCAAAGG+AGG | 0.658013 | 4_3:-60217056 | Msa0652500:CDS |
| TAAGATAGTTGGGAACAAGT+GGG | 0.662068 | 4_3:-60217332 | Msa0652500:CDS |
| ATGATGCTCAATGTTGACGA+TGG | 0.670421 | 4_3:-60217013 | Msa0652500:CDS |
| AGTTGGATTAATCGGCTGCG+AGG | 0.696005 | 4_3:-60219071 | Msa0652500:CDS |
| AAATTGCAAAGAGAATGCAA+GGG | 0.735678 | 4_3:-60217306 | Msa0652500:CDS |
| AAGGCTAAGAGAAAGAATCG+GGG | 0.760246 | 4_3:-60217232 | Msa0652500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTAAAGATGTG+TGG | + | chr4_3:60218468-60218487 | None:intergenic | 15.0% |
| !! | ATCATATAAAACAATTTATG+CGG | + | chr4_3:60219309-60219328 | None:intergenic | 15.0% |
| !! | AAATCCATCATAAAAAGATA+TGG | + | chr4_3:60217020-60217039 | None:intergenic | 20.0% |
| !!! | ATATCTTTTTATGATGGATT+TGG | - | chr4_3:60217019-60217038 | Msa0652500:CDS | 20.0% |
| !! | ATGAATATAAAGTTCTATCT+TGG | - | chr4_3:60217250-60217269 | Msa0652500:CDS | 20.0% |
| !!! | CATTTGTTTAGTTTTGTTTT+TGG | - | chr4_3:60217389-60217408 | Msa0652500:intron | 20.0% |
| !! | TTATAACACTTAGTTGTAAT+AGG | + | chr4_3:60217901-60217920 | None:intergenic | 20.0% |
| !!! | TCTGTTATCACTTTTTTTTA+AGG | + | chr4_3:60218441-60218460 | None:intergenic | 20.0% |
| !! | ACATTTCACTAATTTGATAA+TGG | + | chr4_3:60219245-60219264 | None:intergenic | 20.0% |
| !! | ATTATCAAATTAGTGAAATG+TGG | - | chr4_3:60219244-60219263 | Msa0652500:intron | 20.0% |
| !!! | TTGTTTTATATGATTGTAGA+AGG | - | chr4_3:60219315-60219334 | Msa0652500:intron | 20.0% |
| ! | TTTGGAAACAATTCCATAAT+AGG | - | chr4_3:60216902-60216921 | Msa0652500:CDS | 25.0% |
| ! | AATTCATCGTTATATTGTGT+TGG | - | chr4_3:60216967-60216986 | Msa0652500:CDS | 25.0% |
| !! | TGAACCATATCTTTTTATGA+TGG | - | chr4_3:60217013-60217032 | Msa0652500:CDS | 25.0% |
| ! | GAATGCAATGATATTTAAAC+AGG | - | chr4_3:60217200-60217219 | Msa0652500:CDS | 25.0% |
| ! | ATTTGGCAAATTCTATGATT+CGG | + | chr4_3:60217691-60217710 | None:intergenic | 25.0% |
| ! | TGTAAAGGTTTATATATGCA+AGG | - | chr4_3:60217833-60217852 | Msa0652500:intron | 25.0% |
| ! | TATAAATAAATCTTTGCTCC+AGG | - | chr4_3:60217916-60217935 | Msa0652500:intron | 25.0% |
| ! | ATAAATAAATCTTTGCTCCA+GGG | - | chr4_3:60217917-60217936 | Msa0652500:intron | 25.0% |
| ! | GAAATCATCATATCTAACAT+TGG | - | chr4_3:60218198-60218217 | Msa0652500:intron | 25.0% |
| ! | TCCAAAATTCCATCTAATAT+TGG | - | chr4_3:60218922-60218941 | Msa0652500:CDS | 25.0% |
| ! | CCAAAATTCCATCTAATATT+GGG | - | chr4_3:60218923-60218942 | Msa0652500:CDS | 25.0% |
| ! | ACTACTCTTGAAATACATAA+TGG | - | chr4_3:60219522-60219541 | Msa0652500:CDS | 25.0% |
| AAGCTTAGATTATCCTTAGT+GGG | + | chr4_3:60216931-60216950 | None:intergenic | 30.0% | |
| AAAGCTTAGATTATCCTTAG+TGG | + | chr4_3:60216932-60216951 | None:intergenic | 30.0% | |
| ! | AAGGATAATCTAAGCTTTAG+AGG | - | chr4_3:60216934-60216953 | Msa0652500:CDS | 30.0% |
| ATTCCAAATGGAAGAGATAA+TGG | + | chr4_3:60217175-60217194 | None:intergenic | 30.0% | |
| TTAAACAGGCTGCTATTAAT+TGG | - | chr4_3:60217214-60217233 | Msa0652500:CDS | 30.0% | |
| TAAACAGGCTGCTATTAATT+GGG | - | chr4_3:60217215-60217234 | Msa0652500:CDS | 30.0% | |
| TATTAATTGGGAAAAGGTAG+CGG | - | chr4_3:60217227-60217246 | Msa0652500:CDS | 30.0% | |
| ! | AGAATTTGCCAAATTTGCTT+TGG | - | chr4_3:60217697-60217716 | Msa0652500:intron | 30.0% |
| ACATCAAACCAAAGCAAATT+TGG | + | chr4_3:60217708-60217727 | None:intergenic | 30.0% | |
| CCATTACAAGATGAAACTAA+TGG | + | chr4_3:60217778-60217797 | None:intergenic | 30.0% | |
| ! | CCATTAGTTTCATCTTGTAA+TGG | - | chr4_3:60217775-60217794 | Msa0652500:intron | 30.0% |
| CTTGTTTGTTTGTTTGTATC+AGG | - | chr4_3:60217807-60217826 | Msa0652500:intron | 30.0% | |
| ! | GTTTATATATGCAAGGCTTT+TGG | - | chr4_3:60217840-60217859 | Msa0652500:intron | 30.0% |
| !!! | GTGATGCTAATGTTTTTTAC+TGG | - | chr4_3:60218007-60218026 | Msa0652500:intron | 30.0% |
| TATGATGATTTCATTGAGAG+AGG | + | chr4_3:60218190-60218209 | None:intergenic | 30.0% | |
| ACAGGCAACAACATTAATAT+TGG | + | chr4_3:60218229-60218248 | None:intergenic | 30.0% | |
| TATTTGCGATAGAAATGTAG+AGG | + | chr4_3:60218650-60218669 | None:intergenic | 30.0% | |
| AGGAAAATAATGTTGCTCAA+CGG | + | chr4_3:60218759-60218778 | None:intergenic | 30.0% | |
| ! | TAGATGGAATTTTGGATTTC+TGG | + | chr4_3:60218918-60218937 | None:intergenic | 30.0% |
| ! | CCCAATATTAGATGGAATTT+TGG | + | chr4_3:60218926-60218945 | None:intergenic | 30.0% |
| ATCACAAACCCAATATTAGA+TGG | + | chr4_3:60218934-60218953 | None:intergenic | 30.0% | |
| TATGATTGTAGAAGGATTCA+TGG | - | chr4_3:60219323-60219342 | Msa0652500:intron | 30.0% | |
| ! | TAGTATTTTGTCCTCTTCTT+CGG | + | chr4_3:60219350-60219369 | None:intergenic | 30.0% |
| AAATTGCAAAGAGAATGCAA+GGG | - | chr4_3:60219407-60219426 | Msa0652500:intron | 30.0% | |
| ATAAGGCTAAGAGAAAGAAT+CGG | - | chr4_3:60219479-60219498 | Msa0652500:intron | 30.0% | |
| ! | ATTCATCATTAGCTCCTTTT+TGG | + | chr4_3:60219569-60219588 | None:intergenic | 30.0% |
| !!! | AGTTGTGATTTTGGAACATA+TGG | - | chr4_3:60219751-60219770 | Msa0652500:CDS | 30.0% |
| !!! | TGATTTTGGAACATATGGAA+TGG | - | chr4_3:60219756-60219775 | Msa0652500:CDS | 30.0% |
| AAATCAATTTCCTGCTTCAT+AGG | + | chr4_3:60219799-60219818 | None:intergenic | 30.0% | |
| ! | AAGCAGGAAATTGATTTCAT+GGG | - | chr4_3:60219802-60219821 | Msa0652500:CDS | 30.0% |
| TCATCGTTATATTGTGTTGG+TGG | - | chr4_3:60216970-60216989 | Msa0652500:CDS | 35.0% | |
| GAGCATCTCATTATGTTCAA+AGG | - | chr4_3:60217096-60217115 | Msa0652500:CDS | 35.0% | |
| TCTCCATTATCTCTTCCATT+TGG | - | chr4_3:60217169-60217188 | Msa0652500:CDS | 35.0% | |
| CTAATCCTTTGGACAGTTTA+GGG | - | chr4_3:60217328-60217347 | Msa0652500:CDS | 35.0% | |
| TAATCCTTTGGACAGTTTAG+GGG | - | chr4_3:60217329-60217348 | Msa0652500:CDS | 35.0% | |
| ! | TTTGGTGATTTGATTGTTGC+AGG | - | chr4_3:60217456-60217475 | Msa0652500:intron | 35.0% |
| ! | TTGGTGATTTGATTGTTGCA+GGG | - | chr4_3:60217457-60217476 | Msa0652500:intron | 35.0% |
| GTGTCTATTTGATTGTTGCA+GGG | - | chr4_3:60217504-60217523 | Msa0652500:intron | 35.0% | |
| CAACTCAAGATAGCAACATA+GGG | + | chr4_3:60217590-60217609 | None:intergenic | 35.0% | |
| !! | GCTTCTGAAGTTGGATTAAT+CGG | - | chr4_3:60217634-60217653 | Msa0652500:intron | 35.0% |
| TGAGTTTAGAAGCTTCAGTA+AGG | - | chr4_3:60217744-60217763 | Msa0652500:intron | 35.0% | |
| GAGTTTAGAAGCTTCAGTAA+GGG | - | chr4_3:60217745-60217764 | Msa0652500:intron | 35.0% | |
| ! | GTTTGTATCAGGTCTTGTAA+AGG | - | chr4_3:60217818-60217837 | Msa0652500:intron | 35.0% |
| ! | ATATGCAAGGCTTTTGGTAT+TGG | - | chr4_3:60217846-60217865 | Msa0652500:intron | 35.0% |
| ! | TTTTTAATCTCGTCTCTCTG+CGG | + | chr4_3:60217952-60217971 | None:intergenic | 35.0% |
| CGTGAACAAATACAAGAGTT+TGG | - | chr4_3:60217976-60217995 | Msa0652500:intron | 35.0% | |
| ATACAAGAGTTTGGACAAGT+TGG | - | chr4_3:60217985-60218004 | Msa0652500:intron | 35.0% | |
| GAAGATGATGAAGATGAGTT+GGG | + | chr4_3:60218150-60218169 | None:intergenic | 35.0% | |
| TTAAAATCAGATGTGCCATG+TGG | + | chr4_3:60218366-60218385 | None:intergenic | 35.0% | |
| TCTCTCTATCTCTATGTTAC+AGG | + | chr4_3:60218411-60218430 | None:intergenic | 35.0% | |
| ATCAGAGTTGTATATTGCAC+TGG | + | chr4_3:60218581-60218600 | None:intergenic | 35.0% | |
| TAGAAATGTAGAGGATGATG+TGG | + | chr4_3:60218641-60218660 | None:intergenic | 35.0% | |
| ! | AACTAACAAAGCGTCTTCAT+CGG | - | chr4_3:60218728-60218747 | Msa0652500:intron | 35.0% |
| TTGGTTGCTTCATGAAATTG+TGG | + | chr4_3:60219142-60219161 | None:intergenic | 35.0% | |
| ATCGAAGCTCATAAGATAGT+TGG | - | chr4_3:60219370-60219389 | Msa0652500:intron | 35.0% | |
| TCGAAGCTCATAAGATAGTT+GGG | - | chr4_3:60219371-60219390 | Msa0652500:intron | 35.0% | |
| ATAAGATAGTTGGGAACAAG+TGG | - | chr4_3:60219380-60219399 | Msa0652500:intron | 35.0% | |
| TAAGATAGTTGGGAACAAGT+GGG | - | chr4_3:60219381-60219400 | Msa0652500:intron | 35.0% | |
| GAAATTGCAAAGAGAATGCA+AGG | - | chr4_3:60219406-60219425 | Msa0652500:intron | 35.0% | |
| !! | GATTCTTTCTCTTAGCCTTA+TGG | + | chr4_3:60219480-60219499 | None:intergenic | 35.0% |
| TAAGGCTAAGAGAAAGAATC+GGG | - | chr4_3:60219480-60219499 | Msa0652500:intron | 35.0% | |
| AATCGGGGTAATAGTTCAAA+GGG | - | chr4_3:60219496-60219515 | Msa0652500:CDS | 35.0% | |
| AATGGAAGTCAATGATGCTA+AGG | - | chr4_3:60219540-60219559 | Msa0652500:CDS | 35.0% | |
| TCTACGAGCATGATGAAATT+TGG | - | chr4_3:60219589-60219608 | Msa0652500:CDS | 35.0% | |
| CTACGAGCATGATGAAATTT+GGG | - | chr4_3:60219590-60219609 | Msa0652500:CDS | 35.0% | |
| TCTCTGAGCTTTCAAAGTTT+GGG | + | chr4_3:60219621-60219640 | None:intergenic | 35.0% | |
| !!! | TGATTTTAGCTCTGAAGGTT+TGG | - | chr4_3:60219642-60219661 | Msa0652500:intron | 35.0% |
| ! | TGAAGGTTTGGTTAATCCAA+AGG | - | chr4_3:60219654-60219673 | Msa0652500:intron | 35.0% |
| AATCCAAAGGAGGAAATTGA+TGG | - | chr4_3:60219667-60219686 | Msa0652500:intron | 35.0% | |
| ATCCAAAGGAGGAAATTGAT+GGG | - | chr4_3:60219668-60219687 | Msa0652500:intron | 35.0% | |
| ! | ACGACAATGAGTTGTGATTT+TGG | - | chr4_3:60219742-60219761 | Msa0652500:CDS | 35.0% |
| ! | GAAGCAGGAAATTGATTTCA+TGG | - | chr4_3:60219801-60219820 | Msa0652500:CDS | 35.0% |
| ! | CCTTAGTGGGTAACCTATTA+TGG | + | chr4_3:60216918-60216937 | None:intergenic | 40.0% |
| CCATAATAGGTTACCCACTA+AGG | - | chr4_3:60216915-60216934 | Msa0652500:CDS | 40.0% | |
| !! | ATCTAAGCTTTAGAGGTGAG+AGG | - | chr4_3:60216941-60216960 | Msa0652500:CDS | 40.0% |
| !! | TTATATTGTGTTGGTGGCTG+TGG | - | chr4_3:60216976-60216995 | Msa0652500:CDS | 40.0% |
| !!! | GTTTCGGCTGTTTTTGTTGA+AGG | - | chr4_3:60217066-60217085 | Msa0652500:CDS | 40.0% |
| TTCAAAGGTCTAGTTGCAGT+AGG | - | chr4_3:60217111-60217130 | Msa0652500:CDS | 40.0% | |
| ! | TCTCTTCCATTTGGAATGCT+AGG | - | chr4_3:60217178-60217197 | Msa0652500:CDS | 40.0% |
| TGCATTCCTAGCATTCCAAA+TGG | + | chr4_3:60217187-60217206 | None:intergenic | 40.0% | |
| GGCTGCTATTAATTGGGAAA+AGG | - | chr4_3:60217221-60217240 | Msa0652500:CDS | 40.0% | |
| ATTAGCTAGCCAATGGCTTA+GGG | + | chr4_3:60217313-60217332 | None:intergenic | 40.0% | |
| GCTAATCCTTTGGACAGTTT+AGG | - | chr4_3:60217327-60217346 | Msa0652500:CDS | 40.0% | |
| TCACCAAAGCACAACTAACA+GGG | + | chr4_3:60217444-60217463 | None:intergenic | 40.0% | |
| ATCACCAAAGCACAACTAAC+AGG | + | chr4_3:60217445-60217464 | None:intergenic | 40.0% | |
| ACACCAAAACAGAACCAACA+CGG | + | chr4_3:60217488-60217507 | None:intergenic | 40.0% | |
| GGTGTCTATTTGATTGTTGC+AGG | - | chr4_3:60217503-60217522 | Msa0652500:intron | 40.0% | |
| TTTCTATCGTAGGGGAAGTT+AGG | - | chr4_3:60217529-60217548 | Msa0652500:intron | 40.0% | |
| TAGCAACATAGGGACTAGAA+CGG | + | chr4_3:60217580-60217599 | None:intergenic | 40.0% | |
| CCAACTCAAGATAGCAACAT+AGG | + | chr4_3:60217591-60217610 | None:intergenic | 40.0% | |
| CCTATGTTGCTATCTTGAGT+TGG | - | chr4_3:60217588-60217607 | Msa0652500:intron | 40.0% | |
| !! | GGTTGTTGTCTTGAGTTGAT+AGG | - | chr4_3:60217609-60217628 | Msa0652500:intron | 40.0% |
| !! | TGTTGTCTTGAGTTGATAGG+AGG | - | chr4_3:60217612-60217631 | Msa0652500:intron | 40.0% |
| ! | TTTTAATCTCGTCTCTCTGC+GGG | + | chr4_3:60217951-60217970 | None:intergenic | 40.0% |
| ! | TCGTTTCTTTTGCTTGCTTC+TGG | + | chr4_3:60218049-60218068 | None:intergenic | 40.0% |
| GGAAGATGATGAAGATGAGT+TGG | + | chr4_3:60218151-60218170 | None:intergenic | 40.0% | |
| !! | AGAGGCTTTTTGATGATCAG+AGG | + | chr4_3:60218172-60218191 | None:intergenic | 40.0% |
| AAGGTCTCAAGCTAACATCA+CGG | - | chr4_3:60218281-60218300 | Msa0652500:intron | 40.0% | |
| ATTCCACTTCCGTGACATTA+AGG | - | chr4_3:60218304-60218323 | Msa0652500:intron | 40.0% | |
| !! | GAAGGGTATGTGATGGATAA+GGG | + | chr4_3:60218530-60218549 | None:intergenic | 40.0% |
| GTTGTATATTGCACTGGAGA+AGG | + | chr4_3:60218575-60218594 | None:intergenic | 40.0% | |
| GATTTCACGTCCAATTGAAC+CGG | - | chr4_3:60218598-60218617 | Msa0652500:intron | 40.0% | |
| TATTGGGTTTGTGATGTGTG+AGG | - | chr4_3:60218939-60218958 | Msa0652500:CDS | 40.0% | |
| ATTGGGTTTGTGATGTGTGA+GGG | - | chr4_3:60218940-60218959 | Msa0652500:CDS | 40.0% | |
| TGGTGTATACGACAATGTGA+TGG | + | chr4_3:60219122-60219141 | None:intergenic | 40.0% | |
| TTATGCGGAGAACAAAAGCT+TGG | + | chr4_3:60219166-60219185 | None:intergenic | 40.0% | |
| GTGGTTCTTGATTGAGTTCT+CGG | + | chr4_3:60219437-60219456 | None:intergenic | 40.0% | |
| AGAACTCAATCAAGAACCAC+TGG | - | chr4_3:60219437-60219456 | Msa0652500:intron | 40.0% | |
| !! | TCTTTCTCTTAGCCTTATGG+CGG | + | chr4_3:60219477-60219496 | None:intergenic | 40.0% |
| AAGGCTAAGAGAAAGAATCG+GGG | - | chr4_3:60219481-60219500 | Msa0652500:intron | 40.0% | |
| GAATCGGGGTAATAGTTCAA+AGG | - | chr4_3:60219495-60219514 | Msa0652500:CDS | 40.0% | |
| TGATGCTAAGGAAGCCAAAA+AGG | - | chr4_3:60219552-60219571 | Msa0652500:CDS | 40.0% | |
| CTCTCTGAGCTTTCAAAGTT+TGG | + | chr4_3:60219622-60219641 | None:intergenic | 40.0% | |
| !!! | GAGAGTGATTTTAGCTCTGA+AGG | - | chr4_3:60219637-60219656 | Msa0652500:intron | 40.0% |
| ! | AGGTTTGGTTAATCCAAAGG+AGG | - | chr4_3:60219657-60219676 | Msa0652500:intron | 40.0% |
| TACCCATCAATTTCCTCCTT+TGG | + | chr4_3:60219673-60219692 | None:intergenic | 40.0% | |
| TCGTCAACATTGAGCATCAT+TGG | + | chr4_3:60219700-60219719 | None:intergenic | 40.0% | |
| ATGATGCTCAATGTTGACGA+TGG | - | chr4_3:60219700-60219719 | Msa0652500:intron | 40.0% | |
| ! | TTTGGAGCGAGTCGTTGAAA+TGG | - | chr4_3:60217037-60217056 | Msa0652500:CDS | 45.0% |
| !! | GTTGAAATGGCTCGGTGTTT+CGG | - | chr4_3:60217050-60217069 | Msa0652500:CDS | 45.0% |
| !!! | TCGGCTGTTTTTGTTGAAGG+AGG | - | chr4_3:60217069-60217088 | Msa0652500:CDS | 45.0% |
| TAGGTAAAACCGTTCGTGAG+AGG | - | chr4_3:60217130-60217149 | Msa0652500:CDS | 45.0% | |
| TAAAACCGTTCGTGAGAGGT+TGG | - | chr4_3:60217134-60217153 | Msa0652500:CDS | 45.0% | |
| AAAACCGTTCGTGAGAGGTT+GGG | - | chr4_3:60217135-60217154 | Msa0652500:CDS | 45.0% | |
| TGAGAGGTTGGGAGTGATAT+GGG | - | chr4_3:60217146-60217165 | Msa0652500:CDS | 45.0% | |
| TCAACTTTCCCCTAAGCCAT+TGG | - | chr4_3:60217301-60217320 | Msa0652500:CDS | 45.0% | |
| TTAGCTAGCCAATGGCTTAG+GGG | + | chr4_3:60217312-60217331 | None:intergenic | 45.0% | |
| ! | GATTAGCTAGCCAATGGCTT+AGG | + | chr4_3:60217314-60217333 | None:intergenic | 45.0% |
| !! | CCAAAGGATTAGCTAGCCAA+TGG | + | chr4_3:60217320-60217339 | None:intergenic | 45.0% |
| ! | CCATTGGCTAGCTAATCCTT+TGG | - | chr4_3:60217317-60217336 | Msa0652500:CDS | 45.0% |
| CATCCCTGTTAGTTGTGCTT+TGG | - | chr4_3:60217438-60217457 | Msa0652500:intron | 45.0% | |
| CACCAAAACAGAACCAACAC+GGG | + | chr4_3:60217487-60217506 | None:intergenic | 45.0% | |
| TTGCAGGGACTTTCTATCGT+AGG | - | chr4_3:60217519-60217538 | Msa0652500:intron | 45.0% | |
| TGCAGGGACTTTCTATCGTA+GGG | - | chr4_3:60217520-60217539 | Msa0652500:intron | 45.0% | |
| !! | TGATAGGAGGCTTCTGAAGT+TGG | - | chr4_3:60217625-60217644 | Msa0652500:intron | 45.0% |
| ! | GGAATGCGGGATTTTGAATG+TGG | - | chr4_3:60217663-60217682 | Msa0652500:intron | 45.0% |
| TTTGCTTGCTTCTGGACTTG+TGG | + | chr4_3:60218041-60218060 | None:intergenic | 45.0% | |
| ! | GTGGTGGTGTGAGGATTTAT+GGG | + | chr4_3:60218128-60218147 | None:intergenic | 45.0% |
| ! | GATGATGAAGATGAGTTGGG+TGG | + | chr4_3:60218147-60218166 | None:intergenic | 45.0% |
| !! | TTTTGGGTCACAGAGACTTC+GGG | + | chr4_3:60218256-60218275 | None:intergenic | 45.0% |
| !! | GTTTTGGGTCACAGAGACTT+CGG | + | chr4_3:60218257-60218276 | None:intergenic | 45.0% |
| !! | CTTGAGACCTTGGTGGTTTT+GGG | + | chr4_3:60218272-60218291 | None:intergenic | 45.0% |
| ! | ATGTTAGCTTGAGACCTTGG+TGG | + | chr4_3:60218279-60218298 | None:intergenic | 45.0% |
| ! | GTGATGTTAGCTTGAGACCT+TGG | + | chr4_3:60218282-60218301 | None:intergenic | 45.0% |
| CACTTCCGTGACATTAAGGT+GGG | - | chr4_3:60218308-60218327 | Msa0652500:intron | 45.0% | |
| CATAGCCCACCTTAATGTCA+CGG | + | chr4_3:60218316-60218335 | None:intergenic | 45.0% | |
| !! | CGAAGGGTATGTGATGGATA+AGG | + | chr4_3:60218531-60218550 | None:intergenic | 45.0% |
| AGGGTTGTTAAGGAAGCGAA+GGG | + | chr4_3:60218547-60218566 | None:intergenic | 45.0% | |
| ! | CCTGAATCAACCGGTTCAAT+TGG | + | chr4_3:60218611-60218630 | None:intergenic | 45.0% |
| ! | CCAATTGAACCGGTTGATTC+AGG | - | chr4_3:60218608-60218627 | Msa0652500:intron | 45.0% |
| !! | TTAGTTACAGAGAAGCGTCG+CGG | + | chr4_3:60218714-60218733 | None:intergenic | 45.0% |
| CATTGTCGAAAAGAGGAAGC+TGG | + | chr4_3:60218788-60218807 | None:intergenic | 45.0% | |
| ! | CAGCTTCCTCTTTTCGACAA+TGG | - | chr4_3:60218786-60218805 | Msa0652500:intron | 45.0% |
| AGCCTTTCAAGCCTTTGCTT+CGG | + | chr4_3:60218812-60218831 | None:intergenic | 45.0% | |
| CAAAGGCTTGAAAGGCTTGA+CGG | - | chr4_3:60218815-60218834 | Msa0652500:intron | 45.0% | |
| AGACATCTTGCGCTCTTGTT+CGG | - | chr4_3:60218844-60218863 | Msa0652500:intron | 45.0% | |
| TTGTTCGGAGGTAAGTGTGA+TGG | - | chr4_3:60218859-60218878 | Msa0652500:intron | 45.0% | |
| CGGAGAACAAAAGCTTGGAT+TGG | + | chr4_3:60219161-60219180 | None:intergenic | 45.0% | |
| TCATATGTTTGTTCCCGCGT+TGG | + | chr4_3:60219191-60219210 | None:intergenic | 45.0% | |
| GCTCAATGTTGACGATGGAA+TGG | - | chr4_3:60219705-60219724 | Msa0652500:intron | 45.0% | |
| !!! | TGGAATGGAGTTTTTTCCCG+AGG | - | chr4_3:60219771-60219790 | Msa0652500:CDS | 45.0% |
| TTCCTGCTTCATAGGAACCT+CGG | + | chr4_3:60219791-60219810 | None:intergenic | 45.0% | |
| !! | ATTGTGTTGGTGGCTGTGGT+AGG | - | chr4_3:60216980-60216999 | Msa0652500:CDS | 50.0% |
| AGCGAGTCGTTGAAATGGCT+CGG | - | chr4_3:60217042-60217061 | Msa0652500:CDS | 50.0% | |
| GTGAGAGGTTGGGAGTGATA+TGG | - | chr4_3:60217145-60217164 | Msa0652500:CDS | 50.0% | |
| TGCACCCCTAAACTGTCCAA+AGG | + | chr4_3:60217336-60217355 | None:intergenic | 50.0% | |
| ! | TGGACAGTTTAGGGGTGCAT+AGG | - | chr4_3:60217337-60217356 | Msa0652500:CDS | 50.0% |
| ! | AGGGGTGCATAGGTTTCTGT+AGG | - | chr4_3:60217347-60217366 | Msa0652500:CDS | 50.0% |
| CAAAACAGAACCAACACGGG+TGG | + | chr4_3:60217484-60217503 | None:intergenic | 50.0% | |
| !!! | CACCCGTGTTGGTTCTGTTT+TGG | - | chr4_3:60217482-60217501 | Msa0652500:intron | 50.0% |
| GCAGGGACTTTCTATCGTAG+GGG | - | chr4_3:60217521-60217540 | Msa0652500:intron | 50.0% | |
| AGTTGGATTAATCGGCTGCG+AGG | - | chr4_3:60217642-60217661 | Msa0652500:intron | 50.0% | |
| TTAATCGGCTGCGAGGAATG+CGG | - | chr4_3:60217649-60217668 | Msa0652500:intron | 50.0% | |
| ! | GGTGGTGGTGTGAGGATTTA+TGG | + | chr4_3:60218129-60218148 | None:intergenic | 50.0% |
| ! | GATGAAGATGAGTTGGGTGG+TGG | + | chr4_3:60218144-60218163 | None:intergenic | 50.0% |
| ACAGAGACTTCGGGTGAAAC+AGG | + | chr4_3:60218247-60218266 | None:intergenic | 50.0% | |
| TCTGTGACCCAAAACCACCA+AGG | - | chr4_3:60218262-60218281 | Msa0652500:intron | 50.0% | |
| !! | GCTTGAGACCTTGGTGGTTT+TGG | + | chr4_3:60218273-60218292 | None:intergenic | 50.0% |
| CCACCTTAATGTCACGGAAG+TGG | + | chr4_3:60218310-60218329 | None:intergenic | 50.0% | |
| CCACTTCCGTGACATTAAGG+TGG | - | chr4_3:60218307-60218326 | Msa0652500:intron | 50.0% | |
| GCCAATCAGAACATGCCACA+TGG | - | chr4_3:60218348-60218367 | Msa0652500:intron | 50.0% | |
| GCCATGTGGCATGTTCTGAT+TGG | + | chr4_3:60218352-60218371 | None:intergenic | 50.0% | |
| !! | TGATGATCATGGTGGTGGTG+TGG | + | chr4_3:60218500-60218519 | None:intergenic | 50.0% |
| GAAGCTGATGATCATGGTGG+TGG | + | chr4_3:60218505-60218524 | None:intergenic | 50.0% | |
| GTGGAAGCTGATGATCATGG+TGG | + | chr4_3:60218508-60218527 | None:intergenic | 50.0% | |
| AGGGTGGAAGCTGATGATCA+TGG | + | chr4_3:60218511-60218530 | None:intergenic | 50.0% | |
| !! | GGGTATGTGATGGATAAGGG+TGG | + | chr4_3:60218527-60218546 | None:intergenic | 50.0% |
| ! | AGGAAGCGAAGGGTATGTGA+TGG | + | chr4_3:60218537-60218556 | None:intergenic | 50.0% |
| GAGGGTTGTTAAGGAAGCGA+AGG | + | chr4_3:60218548-60218567 | None:intergenic | 50.0% | |
| GAAGGATGCGAGGGTTGTTA+AGG | + | chr4_3:60218557-60218576 | None:intergenic | 50.0% | |
| ! | GGTGTTGAGCCTGAATCAAC+CGG | + | chr4_3:60218620-60218639 | None:intergenic | 50.0% |
| ! | AAAGAGGAAGCTGGTGCTGA+AGG | + | chr4_3:60218779-60218798 | None:intergenic | 50.0% |
| CTTCGGCCATTGTCGAAAAG+AGG | + | chr4_3:60218795-60218814 | None:intergenic | 50.0% | |
| TTCGACAATGGCCGAAGCAA+AGG | - | chr4_3:60218798-60218817 | Msa0652500:intron | 50.0% | |
| TTCGGAGGTAAGTGTGATGG+CGG | - | chr4_3:60218862-60218881 | Msa0652500:intron | 50.0% | |
| TGTGTGAGGGAGGAAGCTTA+TGG | - | chr4_3:60218953-60218972 | Msa0652500:CDS | 50.0% | |
| TTCTCCGCATAATGCCAACG+CGG | - | chr4_3:60219174-60219193 | Msa0652500:intron | 50.0% | |
| GGATTCATGGACCGAAGAAG+AGG | - | chr4_3:60219336-60219355 | Msa0652500:intron | 50.0% | |
| GTTGACGATGGAATGGCAAG+CGG | - | chr4_3:60219712-60219731 | Msa0652500:intron | 50.0% | |
| TCCTGCTTCATAGGAACCTC+GGG | + | chr4_3:60219790-60219809 | None:intergenic | 50.0% | |
| CACTCCCAACCTCTCACGAA+CGG | + | chr4_3:60217142-60217161 | None:intergenic | 55.0% | |
| !! | GCAGCGCTCTTCTGTTTCTG+TGG | - | chr4_3:60217413-60217432 | Msa0652500:intron | 55.0% |
| TAATCGGCTGCGAGGAATGC+GGG | - | chr4_3:60217650-60217669 | Msa0652500:intron | 55.0% | |
| ! | ATGAGTTGGGTGGTGGTGTG+AGG | + | chr4_3:60218137-60218156 | None:intergenic | 55.0% |
| TGCACTGGAGAAGGATGCGA+GGG | + | chr4_3:60218566-60218585 | None:intergenic | 55.0% | |
| TTGCACTGGAGAAGGATGCG+AGG | + | chr4_3:60218567-60218586 | None:intergenic | 55.0% | |
| GGCCGAAGCAAAGGCTTGAA+AGG | - | chr4_3:60218807-60218826 | Msa0652500:intron | 55.0% | |
| AGGCTTGAAAGGCTTGACGG+AGG | - | chr4_3:60218818-60218837 | Msa0652500:intron | 55.0% | |
| CATCTTGCGCTCTTGTTCGG+AGG | - | chr4_3:60218847-60218866 | Msa0652500:intron | 55.0% | |
| TCGGAGGTAAGTGTGATGGC+GGG | - | chr4_3:60218863-60218882 | Msa0652500:intron | 55.0% | |
| GGGTTTGTGATGTGTGAGGG+AGG | - | chr4_3:60218943-60218962 | Msa0652500:CDS | 55.0% | |
| GTGAGGGAGGAAGCTTATGG+TGG | - | chr4_3:60218956-60218975 | Msa0652500:CDS | 55.0% | |
| TCTCCGCATAATGCCAACGC+GGG | - | chr4_3:60219175-60219194 | Msa0652500:intron | 55.0% | |
| ! | GTTCCCGCGTTGGCATTATG+CGG | + | chr4_3:60219181-60219200 | None:intergenic | 55.0% |
| GATGGAATGGCAAGCGGATC+TGG | - | chr4_3:60219718-60219737 | Msa0652500:intron | 55.0% | |
| TCCCGAGGTTCCTATGAAGC+AGG | - | chr4_3:60219786-60219805 | Msa0652500:CDS | 55.0% | |
| CTCTGCGGGTTCAACATCCC+TGG | + | chr4_3:60217937-60217956 | None:intergenic | 60.0% | |
| ! | CGGAGGTAAGTGTGATGGCG+GGG | - | chr4_3:60218864-60218883 | Msa0652500:intron | 60.0% |
| !! | GGAGGTAAGTGTGATGGCGG+GGG | - | chr4_3:60218865-60218884 | Msa0652500:intron | 60.0% |
| !! | CTTAGCCTTATGGCGGCGCT+TGG | + | chr4_3:60219470-60219489 | None:intergenic | 60.0% |
| GTTGCAGGGACCACCCGTGT+TGG | - | chr4_3:60217471-60217490 | Msa0652500:intron | 65.0% | |
| TCGCGGCAGCGAAAATGCGG+CGG | + | chr4_3:60218697-60218716 | None:intergenic | 65.0% | |
| GCGTCGCGGCAGCGAAAATG+CGG | + | chr4_3:60218700-60218719 | None:intergenic | 65.0% | |
| ! | AGCCTTATGGCGGCGCTTGG+TGG | + | chr4_3:60219467-60219486 | None:intergenic | 65.0% |
| !! | ATGGCGGGGGTGCTCGTGAG+TGG | - | chr4_3:60218878-60218897 | Msa0652500:intron | 70.0% |
| !! | GGCGCTTGGTGGCGTTCCAG+TGG | + | chr4_3:60219456-60219475 | None:intergenic | 70.0% |
| ! | CGCCACCAAGCGCCGCCATA+AGG | - | chr4_3:60219462-60219481 | Msa0652500:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 60216889 | 60219846 | 60216889 | ID=Msa0652500;Name=Msa0652500 |
| chr4_3 | mRNA | 60216889 | 60219846 | 60216889 | ID=Msa0652500-mRNA-1;Parent=Msa0652500;Name=Msa0652500-mRNA-1;_AED=0.27;_eAED=0.29;_QI=0|0|0|1|1|1|4|0|324 |
| chr4_3 | exon | 60219738 | 60219846 | 60219738 | ID=Msa0652500-mRNA-1:exon:16374;Parent=Msa0652500-mRNA-1 |
| chr4_3 | exon | 60219493 | 60219647 | 60219493 | ID=Msa0652500-mRNA-1:exon:16373;Parent=Msa0652500-mRNA-1 |
| chr4_3 | exon | 60218907 | 60219104 | 60218907 | ID=Msa0652500-mRNA-1:exon:16372;Parent=Msa0652500-mRNA-1 |
| chr4_3 | exon | 60216889 | 60217401 | 60216889 | ID=Msa0652500-mRNA-1:exon:16371;Parent=Msa0652500-mRNA-1 |
| chr4_3 | CDS | 60219738 | 60219846 | 60219738 | ID=Msa0652500-mRNA-1:cds;Parent=Msa0652500-mRNA-1 |
| chr4_3 | CDS | 60219493 | 60219647 | 60219493 | ID=Msa0652500-mRNA-1:cds;Parent=Msa0652500-mRNA-1 |
| chr4_3 | CDS | 60218907 | 60219104 | 60218907 | ID=Msa0652500-mRNA-1:cds;Parent=Msa0652500-mRNA-1 |
| chr4_3 | CDS | 60216889 | 60217401 | 60216889 | ID=Msa0652500-mRNA-1:cds;Parent=Msa0652500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
