AlfalfaGEDB | Msa0652520

M. sativa cultivar zhongmu-4 / Msa0652520

KEGG: K09326
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007163 GO:0007275 GO:0008150 GO:0008284 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009889 GO:0009987 GO:0010073 GO:0010075 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030010 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0042127 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0048859 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090451 GO:0090691 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652520	KEH30946.1	61.864	354	71	7	405	694	19	372	2.12e-114	361
Msa0652520	KEH30946.1	78.856	402	58	3	1	402	1	375	0.0	604

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652520	sp\|Q6X7J5\|WOX8_ARATH	33.108	296	174	5	407	695	47	325	1.02e-33	135
Msa0652520	sp\|Q6X7J5\|WOX8_ARATH	47.244	127	51	2	9	119	8	134	2.47e-28	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0652520	TF	HB-WOX

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652520	MtrunA17_Chr4g0046231	81.953	338	48	2	62	399	1	325	0.0	525
Msa0652520	MtrunA17_Chr4g0046231	60.121	331	68	7	434	700	1	331	6.32e-102	315
Msa0652520	MtrunA17_Chr7g0223471	58.128	406	148	6	8	399	7	404	5.39e-148	436
Msa0652520	MtrunA17_Chr7g0223471	48.698	384	111	8	394	695	26	405	4.57e-99	310
Msa0652520	MtrunA17_Chr4g0046241	76.786	168	39	0	166	333	2	169	2.80e-82	258
Msa0652520	MtrunA17_Chr4g0046241	73.134	134	10	3	521	628	2	135	1.79e-51	176
Msa0652520	MtrunA17_Chr2g0283141	36.028	433	202	15	8	399	7	405	2.31e-54	193
Msa0652520	MtrunA17_Chr2g0283141	35.500	400	156	12	383	695	22	406	1.91e-48	177
Msa0652520	MtrunA17_Chr4g0046251	89.189	74	8	0	627	700	17	90	1.99e-42	148
Msa0652520	MtrunA17_Chr4g0046251	59.420	69	28	0	331	399	16	84	9.90e-23	92.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652520	AT5G45980.1	33.108	296	174	5	407	695	47	325	1.04e-34	135
Msa0652520	AT5G45980.1	47.244	127	51	2	9	119	8	134	2.51e-29	119
Msa0652520	AT2G33880.1	63.889	72	26	0	400	471	40	111	2.06e-26	112
Msa0652520	AT2G33880.1	45.205	73	36	1	327	399	309	377	1.67e-12	70.1
Msa0652520	AT2G33880.1	48.333	60	31	0	636	695	319	378	2.46e-12	69.7
Msa0652520	AT2G33880.2	63.014	73	27	0	400	472	40	112	2.65e-26	112
Msa0652520	AT2G33880.2	44.000	75	38	1	327	401	309	379	1.50e-12	70.5
Msa0652520	AT2G33880.2	49.180	61	31	0	636	696	319	379	2.12e-12	70.1
Msa0652520	AT3G03660.1	47.872	94	39	2	1	94	1	84	1.38e-19	89.7
Msa0652520	AT3G03660.1	61.111	54	21	0	413	466	31	84	3.81e-17	82.4

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Find 191 sgRNAs with CRISPR-Local

Find 663 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAATGGAATATCAGC+AGG	0.549420	4_3:-60248990	None:intergenic
AAAGGATTCACGAACGTTAA+AGG	0.277504	4_3:-60249286	None:intergenic
AACATCATGACCTATGGAAA+TGG	0.408768	4_3:+60256950	Msa0652520:CDS
AACCATCAAAATCGTCTGCA+TGG	0.567329	4_3:+60247559	Msa0652520:CDS
AAGAAAGAAATCCTGGACCA+AGG	0.658709	4_3:+60248136	Msa0652520:CDS
AAGAAAGAACTCCTGGACCA+AGG	0.644218	4_3:+60256351	Msa0652520:CDS
AAGAATTTACGAACGTTAAA+AGG	0.235477	4_3:-60257635	None:intergenic
AAGACGCTGGAATCACCAAT+CGG	0.600408	4_3:-60256494	None:intergenic
AAGGATTCACGAACGTTAAA+GGG	0.443421	4_3:-60249285	None:intergenic
AAGTAATCGAGGTTAACGCA+GGG	0.673390	4_3:+60249262	Msa0652520:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGTAGAAGGAGTTGTT+TGG	-	chr4_3:60247612-60247631	None:intergenic	30.0%
TACTAGAGATCATGTTTGTT+TGG	-	chr4_3:60247822-60247841	None:intergenic	30.0%
TTAGGATTTCAATGCAAGTA+AGG	+	chr4_3:60247943-60247962	Msa0652520:intron	30.0%
TTGCTTGAATGTGTGAATTT+AGG	-	chr4_3:60247972-60247991	None:intergenic	30.0%
GTAAACTTTGCATGTTTGAT+CGG	+	chr4_3:60248080-60248099	Msa0652520:intron	30.0%
GATAATGAAGAAAGAAATCC+TGG	+	chr4_3:60248129-60248148	Msa0652520:CDS	30.0%
ATCTTCTTGATTTCATCTAC+AGG	-	chr4_3:60248234-60248253	None:intergenic	30.0%
CGTGAACAATTAGAAGAATT+TGG	+	chr4_3:60248255-60248274	Msa0652520:CDS	30.0%
GTTAGATATTGTGATTTCAC+TGG	-	chr4_3:60248478-60248497	None:intergenic	30.0%
GGAATCTCCAATATTAATGA+TGG	+	chr4_3:60248504-60248523	Msa0652520:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	60247429	60257778	60247429	ID=Msa0652520;Name=Msa0652520
chr4_3	mRNA	60247429	60257778	60247429	ID=Msa0652520-mRNA-1;Parent=Msa0652520;Name=Msa0652520-mRNA-1;_AED=0.13;_eAED=0.13;_QI=64\|0\|0\|0.87\|0.42\|0.5\|8\|0\|700
chr4_3	exon	60247429	60247580	60247429	ID=Msa0652520-mRNA-1:exon:16340;Parent=Msa0652520-mRNA-1
chr4_3	exon	60248124	60249032	60248124	ID=Msa0652520-mRNA-1:exon:16341;Parent=Msa0652520-mRNA-1
chr4_3	exon	60249211	60249410	60249211	ID=Msa0652520-mRNA-1:exon:16342;Parent=Msa0652520-mRNA-1
chr4_3	exon	60255697	60255703	60255697	ID=Msa0652520-mRNA-1:exon:16343;Parent=Msa0652520-mRNA-1
chr4_3	exon	60256339	60256537	60256339	ID=Msa0652520-mRNA-1:exon:16344;Parent=Msa0652520-mRNA-1
chr4_3	exon	60256544	60256779	60256544	ID=Msa0652520-mRNA-1:exon:16345;Parent=Msa0652520-mRNA-1
chr4_3	exon	60256846	60257088	60256846	ID=Msa0652520-mRNA-1:exon:16346;Parent=Msa0652520-mRNA-1
chr4_3	exon	60257561	60257778	60257561	ID=Msa0652520-mRNA-1:exon:16347;Parent=Msa0652520-mRNA-1
chr4_3	five_prime_UTR	60247429	60247492	60247429	ID=Msa0652520-mRNA-1:five_prime_utr;Parent=Msa0652520-mRNA-1
chr4_3	CDS	60247493	60247580	60247493	ID=Msa0652520-mRNA-1:cds;Parent=Msa0652520-mRNA-1
chr4_3	CDS	60248124	60249032	60248124	ID=Msa0652520-mRNA-1:cds;Parent=Msa0652520-mRNA-1
chr4_3	CDS	60249211	60249410	60249211	ID=Msa0652520-mRNA-1:cds;Parent=Msa0652520-mRNA-1
chr4_3	CDS	60255697	60255703	60255697	ID=Msa0652520-mRNA-1:cds;Parent=Msa0652520-mRNA-1
chr4_3	CDS	60256339	60256537	60256339	ID=Msa0652520-mRNA-1:cds;Parent=Msa0652520-mRNA-1
chr4_3	CDS	60256544	60256779	60256544	ID=Msa0652520-mRNA-1:cds;Parent=Msa0652520-mRNA-1
chr4_3	CDS	60256846	60257088	60256846	ID=Msa0652520-mRNA-1:cds;Parent=Msa0652520-mRNA-1
chr4_3	CDS	60257561	60257778	60257561	ID=Msa0652520-mRNA-1:cds;Parent=Msa0652520-mRNA-1

Gene Sequence

>Msa0652520

ATGGCTCGTAAGAAGAAAGTACATTGGCCAAGCAAGTTTATAAAGTCACCAAATTCGTCGAACTCCAACCATCAAAATCGTCTGCATGGTGGAGATAATGAAGAAAGAAATCCTGGACCAAGGCCAAGATGGAACCCAAAGCCTGAGCAAATCCGCATTCTGGAAGCAATCTACAACTCAGGGATGAAGAATCCACCTGTAGATGAAATCAAGAAGATACGTGAACAATTAGAAGAATTTGGGAAAATTGGTGATTCGAGTGTCTTTTACTGGTTTCAAAACCGCAAGTCCAAAGGCAAAAACAAAAAAGCACCCTACCCCAAGAAATCAAAAAGACAACCAATTGCAGATCCAGCTCCTAATAACTCTCTCCCACAAATCCCACCACCACCACCTAATCCATCTTCATCATCTTCCTCTAATCACCAAAGAGCCTCTCCCAGTGAAATCACAATATCTAACAATATTGGAATCTCCAATATTAATGATGGGAGAGTGTTGGTGCCTAATTCATCCACAATCTCTCCGAACCAAAAGCAAGATGATACTTATTCTCACACCCCAACTGAAACCGATCTACAACTACCTAAAACCCTATTTTCCTCTTTCTCAATGGAGAATCATGTTAATGAAGGGGTAGTGCTTAATGACATGACAACACTAGAGGGGTTTAATTACTTCTCTGATTTCCCGAATATGATTGAACCCTCACCTCAACAAAATGTTGATCTTCCTGTGCTTAATTATGATAACATCATGAACAATGAAAATGAAAATGGAATCTGCTCAACCAATGATCTTTTTGATCAAGTGAATGTTCAAGAGGAAGCCATGAATATGATGCACATGCACCAACAAGACCCGCAATTTAATTTTGGTGTCACAACAACATCAAGTAATGATGATCATTCAACTGATCTTGCTCCTCTACCTCCGGCCATTGACATGAGTGCACCTGCTGATATTCCATTCCTTTTTACTGATGATCAACTTCAAGGTTTTGGTGAGGAAGATGGTCTGAGAAAATGTAGAATTTTTACTGCCAACGAAGTAATCGAGGTTAACGCAGGGCCCTTTAACGTTCGTGAATCCTTTGGTAATAGAGCAGTTCTGTTTGACTCCTTCTGTACCCCGGTTCTAACCGATGAATGGGGTGTCACCCTCAACTCACTCTACCATGGAGCTGATTATTACGTGTACATTGGTGGAGATGATGAAGAAAGAACTCCTGGACCAAGGCCAAGATGGATCCCAAAGCCTGAGCAAATCCGCATTCTCAAAGCCATCTATAACTCAGGGATGACGAATCCACGTAGAGATGAGATTAAGAAGATACGTGGACAATTAGAAGAATTTGGACCGATTGGTGATTCCAGCGTCTTTTATTGGTTTCAAAATCGCAAAAGCAAAACCAACAAAGTACCCTATAACAAGAAACAGGAAACACAACAAAACGCAGCTCCAGATAGCTCTCTCCCACAAATCACCACACCACCACTCAACTCATCTTCATCATCTTCCTCTAACAATATTGGAATCTCCAATATTAATGATGGGACGGTGATGGTGCCTAATTCACCTGCAATCTCTCTGAGCCAAAACCAAGGTGGTACTTATCCTCACACCCTCACTGGAACCGTGCTTAATGACATGATAAGGCCAGAGGGGTTTAATTACTTCTCTGATTTTCCAAATATGAGTCAATCCCTACCTCAAGAAAATGTTGATCTGCTTAATTATGATAACATCATGACCTATGGAAATGGAAACTGCTCAATCGATGACCTTTTTTATCAAGAGAATATTCAAGAGGAGTCGATTAATATGATGCATATGCACCAACAAGACCCACAACTTAATTTTGGTGTCACGACAGCTTCAAGTTTTGGTGAGGACGATGGTACAGCAAAATGTAGGGTGATTACTATCAACGGTACATTCAAAGTTAATGCAGGGCCTTTTAACGTTCGTAAATTCTTTGGCGATGGAGCAGTTCTACTTGACTCCTCCGGTGTCCCGGTTCTAACCGATGAGTGGGGTGTCACCCTCAACTCACTCCACCATGGGGCTGATTATTTCCTGGTCTGCAATTTTTTCTTA

Protein sequence

>Msa0652520

MARKKKVHWPSKFIKSPNSSNSNHQNRLHGGDNEERNPGPRPRWNPKPEQIRILEAIYNSGMKNPPVDEIKKIREQLEEFGKIGDSSVFYWFQNRKSKGKNKKAPYPKKSKRQPIADPAPNNSLPQIPPPPPNPSSSSSSNHQRASPSEITISNNIGISNINDGRVLVPNSSTISPNQKQDDTYSHTPTETDLQLPKTLFSSFSMENHVNEGVVLNDMTTLEGFNYFSDFPNMIEPSPQQNVDLPVLNYDNIMNNENENGICSTNDLFDQVNVQEEAMNMMHMHQQDPQFNFGVTTTSSNDDHSTDLAPLPPAIDMSAPADIPFLFTDDQLQGFGEEDGLRKCRIFTANEVIEVNAGPFNVRESFGNRAVLFDSFCTPVLTDEWGVTLNSLYHGADYYVYIGGDDEERTPGPRPRWIPKPEQIRILKAIYNSGMTNPRRDEIKKIRGQLEEFGPIGDSSVFYWFQNRKSKTNKVPYNKKQETQQNAAPDSSLPQITTPPLNSSSSSSSNNIGISNINDGTVMVPNSPAISLSQNQGGTYPHTLTGTVLNDMIRPEGFNYFSDFPNMSQSLPQENVDLLNYDNIMTYGNGNCSIDDLFYQENIQEESINMMHMHQQDPQLNFGVTTASSFGEDDGTAKCRVITINGTFKVNAGPFNVRKFFGDGAVLLDSSGVPVLTDEWGVTLNSLHHGADYFLVCNFFL