Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653080 | RHN62402.1 | 83.838 | 297 | 25 | 2 | 1 | 297 | 73 | 346 | 2.08e-167 | 478 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653080 | sp|Q1PFR7|LEC2_ARATH | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 6.76e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653080 | A0A396I9W4 | 83.838 | 297 | 25 | 2 | 1 | 297 | 73 | 346 | 9.95e-168 | 478 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0653080 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653080 | MtrunA17_Chr4g0047031 | 83.838 | 297 | 25 | 2 | 1 | 297 | 73 | 346 | 1.92e-171 | 478 |
| Msa0653080 | MtrunA17_Chr7g0251891 | 34.503 | 171 | 97 | 6 | 98 | 265 | 9 | 167 | 4.52e-20 | 86.3 |
| Msa0653080 | MtrunA17_Chr7g0237841 | 42.105 | 95 | 54 | 1 | 100 | 193 | 618 | 712 | 7.30e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653080 | AT1G28300.1 | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 6.88e-25 | 102 |
| Msa0653080 | AT3G24650.1 | 35.625 | 160 | 92 | 4 | 100 | 255 | 566 | 718 | 1.31e-19 | 89.4 |
| Msa0653080 | AT3G26790.1 | 36.134 | 119 | 74 | 2 | 98 | 214 | 84 | 202 | 1.87e-19 | 87.0 |
Find 60 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAGTCGACTAATAATT+TGG | 0.175655 | 4_3:+60893408 | Msa0653080:CDS |
| TTCCATAGGTATTGGATTAA+TGG | 0.179633 | 4_3:+60892624 | Msa0653080:intron |
| AGGTGACATTGCAGTATTAT+TGG | 0.262098 | 4_3:-60893467 | None:intergenic |
| TACTGCAATGTCACCTATAT+TGG | 0.265257 | 4_3:+60893474 | Msa0653080:CDS |
| TTGCAGTATTATTGGTTTCT+TGG | 0.266997 | 4_3:-60893459 | None:intergenic |
| AAACATGTGGAGTTCTTTCT+TGG | 0.273984 | 4_3:-60891814 | None:intergenic |
| TGCAGTATTATTGGTTTCTT+GGG | 0.347184 | 4_3:-60893458 | None:intergenic |
| TTTACAGTCACCTTTCCATC+TGG | 0.368295 | 4_3:-60891845 | None:intergenic |
| TGGTTTCTTGGGCGACTGAT+TGG | 0.387076 | 4_3:-60893447 | None:intergenic |
| TATATTGGACCATACCGTTT+TGG | 0.393571 | 4_3:+60893489 | Msa0653080:CDS |
| TATTAGTCGACTGAATTTGT+TGG | 0.408347 | 4_3:-60893402 | None:intergenic |
| TAAAACTAGAATGTATATTC+TGG | 0.416222 | 4_3:+60892647 | Msa0653080:CDS |
| ATCCCTTCTTTGCTAGGGGC+TGG | 0.418097 | 4_3:-60892446 | None:intergenic |
| AAAACGGTATGGTCCAATAT+AGG | 0.420315 | 4_3:-60893487 | None:intergenic |
| CTTCAATCCCTTCTTTGCTA+GGG | 0.422481 | 4_3:-60892451 | None:intergenic |
| AACATGTGGAGTTCTTTCTT+GGG | 0.423807 | 4_3:-60891813 | None:intergenic |
| CTTCCAGCCCCTAGCAAAGA+AGG | 0.423970 | 4_3:+60892443 | Msa0653080:CDS |
| CTCCCATGCATAGTTTGTAA+TGG | 0.426934 | 4_3:-60892785 | None:intergenic |
| TCTTGGGCGACTGATTGGTT+TGG | 0.430360 | 4_3:-60893442 | None:intergenic |
| CTATGCATGGGAGATTATCT+AGG | 0.431047 | 4_3:+60892795 | Msa0653080:CDS |
| ACTTCAATCCCTTCTTTGCT+AGG | 0.433841 | 4_3:-60892452 | None:intergenic |
| AAGAGCGATGTTAAGAACTA+TGG | 0.459102 | 4_3:+60891983 | Msa0653080:CDS |
| ACTTTATTCCTCTTCTCTGA+TGG | 0.466086 | 4_3:+60891592 | Msa0653080:CDS |
| ATATATATTCTGGTCGTGAA+TGG | 0.483145 | 4_3:+60892486 | Msa0653080:CDS |
| ATGTATATTCTGGAGGATAC+AGG | 0.488201 | 4_3:+60892657 | Msa0653080:CDS |
| TGGGCGACTGATTGGTTTGG+TGG | 0.491784 | 4_3:-60893439 | None:intergenic |
| CTTTATTCCTCTTCTCTGAT+GGG | 0.493478 | 4_3:+60891593 | Msa0653080:CDS |
| CTCCTCAACTTGGAATTGAA+AGG | 0.494865 | 4_3:+60891648 | Msa0653080:CDS |
| TCCTCAACTTGGAATTGAAA+GGG | 0.497695 | 4_3:+60891649 | Msa0653080:CDS |
| AGATTATCTAGGCCTTTATG+AGG | 0.503786 | 4_3:+60892806 | Msa0653080:CDS |
| AAACCATTACAAACTATGCA+TGG | 0.506884 | 4_3:+60892782 | Msa0653080:CDS |
| TTCAATCCCTTCTTTGCTAG+GGG | 0.508172 | 4_3:-60892450 | None:intergenic |
| TTACAGTCACCTTTCCATCT+GGG | 0.509432 | 4_3:-60891844 | None:intergenic |
| ATCATTACCATCTACCAAAA+CGG | 0.511373 | 4_3:-60893503 | None:intergenic |
| CATCGAGGAAATTGTATGCA+TGG | 0.513461 | 4_3:-60891555 | None:intergenic |
| TCCTTGCCTTGGTCTGCACA+AGG | 0.515897 | 4_3:-60893355 | None:intergenic |
| ATCGAGGAAATTGTATGCAT+GGG | 0.519150 | 4_3:-60891554 | None:intergenic |
| ATTCAAACTACTCCTCAACT+TGG | 0.519405 | 4_3:+60891638 | Msa0653080:CDS |
| TCCCTTTCAATTCCAAGTTG+AGG | 0.524882 | 4_3:-60891650 | None:intergenic |
| GGAGTAGTTTGAATTATGAA+AGG | 0.529192 | 4_3:-60891629 | None:intergenic |
| TGTTGGTTGGCCAAGTCTGA+TGG | 0.537691 | 4_3:-60893385 | None:intergenic |
| ACTTGGAATTGAAAGGGAAG+AGG | 0.557373 | 4_3:+60891655 | Msa0653080:CDS |
| AAAATTCAAATAGAGGGAGG+TGG | 0.561158 | 4_3:+60892412 | Msa0653080:intron |
| CGATGAACAACAAAGCAGCT+TGG | 0.562949 | 4_3:+60893543 | Msa0653080:CDS |
| GAAGAGGAATAAAGTTCATG+AGG | 0.578069 | 4_3:-60891584 | None:intergenic |
| AACCATTACAAACTATGCAT+GGG | 0.584630 | 4_3:+60892783 | Msa0653080:CDS |
| AGTCGACTGAATTTGTTGGT+TGG | 0.588883 | 4_3:-60893398 | None:intergenic |
| TACCATCTACCAAAACGGTA+TGG | 0.590397 | 4_3:-60893498 | None:intergenic |
| ACTTTGTCCCATCAGAGAAG+AGG | 0.602953 | 4_3:-60891600 | None:intergenic |
| TTGGTAGATGGTAATGATGG+TGG | 0.608724 | 4_3:+60893508 | Msa0653080:CDS |
| AACTAGAATGTATATTCTGG+AGG | 0.612428 | 4_3:+60892650 | Msa0653080:CDS |
| TTCCAGCCCCTAGCAAAGAA+GGG | 0.619594 | 4_3:+60892444 | Msa0653080:CDS |
| GCAAAATTGCTAGAGAACAA+AGG | 0.622012 | 4_3:+60891705 | Msa0653080:CDS |
| ACCTTGTGCAGACCAAGGCA+AGG | 0.622413 | 4_3:+60893354 | Msa0653080:CDS |
| CTCTTACCTTGTGCAGACCA+AGG | 0.626902 | 4_3:+60893349 | Msa0653080:CDS |
| TGGTCGCATTGTCCTCCCAA+AGG | 0.635548 | 4_3:+60892003 | Msa0653080:CDS |
| GTAGATGGTAATGATGGTGG+TGG | 0.655874 | 4_3:+60893511 | Msa0653080:CDS |
| GGCTTGTGATCTATCGACAG+TGG | 0.662909 | 4_3:+60893324 | Msa0653080:CDS |
| TTCATGAGGTTGATTCATCG+AGG | 0.675142 | 4_3:-60891570 | None:intergenic |
| AAGAAGCCCTCACCTTTGGG+AGG | 0.679981 | 4_3:-60892015 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATTTTTGTTCTTT+TGG | + | chr4_3:60892358-60892377 | Msa0653080:intron | 10.0% |
| !!! | TATTTTTATTTTTGTTCTTT+TGG | + | chr4_3:60892358-60892377 | Msa0653080:intron | 10.0% |
| !!! | TGTTTTATAAATCATAACAA+CGG | - | chr4_3:60892126-60892145 | None:intergenic | 15.0% |
| !!! | TACAATCATTTTTTTCATTT+GGG | - | chr4_3:60893073-60893092 | None:intergenic | 15.0% |
| !!! | TGTTTTATAAATCATAACAA+CGG | - | chr4_3:60892126-60892145 | None:intergenic | 15.0% |
| !!! | TACAATCATTTTTTTCATTT+GGG | - | chr4_3:60893073-60893092 | None:intergenic | 15.0% |
| !!! | GTTTTATAAATCATAACAAC+GGG | - | chr4_3:60892125-60892144 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | + | chr4_3:60892476-60892495 | Msa0653080:CDS | 20.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | + | chr4_3:60892647-60892666 | Msa0653080:CDS | 20.0% |
| !!! | CTACAATCATTTTTTTCATT+TGG | - | chr4_3:60893074-60893093 | None:intergenic | 20.0% |
| !!! | GTTTTATAAATCATAACAAC+GGG | - | chr4_3:60892125-60892144 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | + | chr4_3:60892476-60892495 | Msa0653080:CDS | 20.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | + | chr4_3:60892647-60892666 | Msa0653080:CDS | 20.0% |
| !!! | CTACAATCATTTTTTTCATT+TGG | - | chr4_3:60893074-60893093 | None:intergenic | 20.0% |
| ! | AGAAAAAAATTGAAGCAAAG+AGG | + | chr4_3:60891681-60891700 | Msa0653080:CDS | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | + | chr4_3:60891887-60891906 | Msa0653080:intron | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | + | chr4_3:60892750-60892769 | Msa0653080:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | + | chr4_3:60892751-60892770 | Msa0653080:intron | 25.0% |
| !!! | TATTGTTTTACAACTCACAA+TGG | - | chr4_3:60893236-60893255 | None:intergenic | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | + | chr4_3:60893408-60893427 | Msa0653080:CDS | 25.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | - | chr4_3:60893585-60893604 | None:intergenic | 25.0% |
| ! | AGAAAAAAATTGAAGCAAAG+AGG | + | chr4_3:60891681-60891700 | Msa0653080:CDS | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | + | chr4_3:60891887-60891906 | Msa0653080:intron | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | + | chr4_3:60892750-60892769 | Msa0653080:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | + | chr4_3:60892751-60892770 | Msa0653080:intron | 25.0% |
| !!! | TATTGTTTTACAACTCACAA+TGG | - | chr4_3:60893236-60893255 | None:intergenic | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | + | chr4_3:60893408-60893427 | Msa0653080:CDS | 25.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | - | chr4_3:60893585-60893604 | None:intergenic | 25.0% |
| GGAGTAGTTTGAATTATGAA+AGG | - | chr4_3:60891632-60891651 | None:intergenic | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | + | chr4_3:60892316-60892335 | Msa0653080:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | + | chr4_3:60892405-60892424 | Msa0653080:intron | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | + | chr4_3:60892406-60892425 | Msa0653080:intron | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | + | chr4_3:60892486-60892505 | Msa0653080:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | - | chr4_3:60892599-60892618 | None:intergenic | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | + | chr4_3:60892598-60892617 | Msa0653080:intron | 30.0% |
| GTATAAACTGGAAATTCCAT+AGG | + | chr4_3:60892610-60892629 | Msa0653080:intron | 30.0% | |
| !! | TTCCATAGGTATTGGATTAA+TGG | + | chr4_3:60892624-60892643 | Msa0653080:intron | 30.0% |
| TACCATTAATCCAATACCTA+TGG | - | chr4_3:60892629-60892648 | None:intergenic | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | + | chr4_3:60892650-60892669 | Msa0653080:CDS | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | - | chr4_3:60892689-60892708 | None:intergenic | 30.0% | |
| ! | TGTTTCAGTTCTCATGATTT+TGG | + | chr4_3:60892713-60892732 | Msa0653080:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | + | chr4_3:60892714-60892733 | Msa0653080:intron | 30.0% |
| AAACCATTACAAACTATGCA+TGG | + | chr4_3:60892782-60892801 | Msa0653080:CDS | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | + | chr4_3:60892783-60892802 | Msa0653080:CDS | 30.0% | |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | - | chr4_3:60892821-60892840 | None:intergenic | 30.0% |
| TGAGGACGAACTTAAAAATT+TGG | + | chr4_3:60892824-60892843 | Msa0653080:CDS | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | - | chr4_3:60893133-60893152 | None:intergenic | 30.0% | |
| TATTAGTCGACTGAATTTGT+TGG | - | chr4_3:60893405-60893424 | None:intergenic | 30.0% | |
| !! | TGCAGTATTATTGGTTTCTT+GGG | - | chr4_3:60893461-60893480 | None:intergenic | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | - | chr4_3:60893462-60893481 | None:intergenic | 30.0% |
| ATCATTACCATCTACCAAAA+CGG | - | chr4_3:60893506-60893525 | None:intergenic | 30.0% | |
| GGAGTAGTTTGAATTATGAA+AGG | - | chr4_3:60891632-60891651 | None:intergenic | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | + | chr4_3:60892316-60892335 | Msa0653080:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | + | chr4_3:60892405-60892424 | Msa0653080:intron | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | + | chr4_3:60892406-60892425 | Msa0653080:intron | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | + | chr4_3:60892486-60892505 | Msa0653080:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | - | chr4_3:60892599-60892618 | None:intergenic | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | + | chr4_3:60892598-60892617 | Msa0653080:intron | 30.0% |
| GTATAAACTGGAAATTCCAT+AGG | + | chr4_3:60892610-60892629 | Msa0653080:intron | 30.0% | |
| !! | TTCCATAGGTATTGGATTAA+TGG | + | chr4_3:60892624-60892643 | Msa0653080:intron | 30.0% |
| TACCATTAATCCAATACCTA+TGG | - | chr4_3:60892629-60892648 | None:intergenic | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | + | chr4_3:60892650-60892669 | Msa0653080:CDS | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | - | chr4_3:60892689-60892708 | None:intergenic | 30.0% | |
| ! | TGTTTCAGTTCTCATGATTT+TGG | + | chr4_3:60892713-60892732 | Msa0653080:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | + | chr4_3:60892714-60892733 | Msa0653080:intron | 30.0% |
| AAACCATTACAAACTATGCA+TGG | + | chr4_3:60892782-60892801 | Msa0653080:CDS | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | + | chr4_3:60892783-60892802 | Msa0653080:CDS | 30.0% | |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | - | chr4_3:60892821-60892840 | None:intergenic | 30.0% |
| TGAGGACGAACTTAAAAATT+TGG | + | chr4_3:60892824-60892843 | Msa0653080:CDS | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | - | chr4_3:60893133-60893152 | None:intergenic | 30.0% | |
| TATTAGTCGACTGAATTTGT+TGG | - | chr4_3:60893405-60893424 | None:intergenic | 30.0% | |
| !! | TGCAGTATTATTGGTTTCTT+GGG | - | chr4_3:60893461-60893480 | None:intergenic | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | - | chr4_3:60893462-60893481 | None:intergenic | 30.0% |
| ATCATTACCATCTACCAAAA+CGG | - | chr4_3:60893506-60893525 | None:intergenic | 30.0% | |
| GAAGAGGAATAAAGTTCATG+AGG | - | chr4_3:60891587-60891606 | None:intergenic | 35.0% | |
| ACTTTATTCCTCTTCTCTGA+TGG | + | chr4_3:60891592-60891611 | Msa0653080:CDS | 35.0% | |
| CTTTATTCCTCTTCTCTGAT+GGG | + | chr4_3:60891593-60891612 | Msa0653080:CDS | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | + | chr4_3:60891638-60891657 | Msa0653080:CDS | 35.0% | |
| TCCTCAACTTGGAATTGAAA+GGG | + | chr4_3:60891649-60891668 | Msa0653080:CDS | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | + | chr4_3:60891705-60891724 | Msa0653080:CDS | 35.0% | |
| AACATGTGGAGTTCTTTCTT+GGG | - | chr4_3:60891816-60891835 | None:intergenic | 35.0% | |
| AAACATGTGGAGTTCTTTCT+TGG | - | chr4_3:60891817-60891836 | None:intergenic | 35.0% | |
| AAGAGCGATGTTAAGAACTA+TGG | + | chr4_3:60891983-60892002 | Msa0653080:CDS | 35.0% | |
| !! | TGTGTCACTGTATTTTCGAA+AGG | - | chr4_3:60892281-60892300 | None:intergenic | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | - | chr4_3:60892412-60892431 | None:intergenic | 35.0% |
| ! | ACCTCCCTCTATTTGAATTT+TGG | - | chr4_3:60892413-60892432 | None:intergenic | 35.0% |
| AAAATTCAAATAGAGGGAGG+TGG | + | chr4_3:60892412-60892431 | Msa0653080:intron | 35.0% | |
| !! | AGGGATTGAAGTCATTTTCA+AGG | + | chr4_3:60892463-60892482 | Msa0653080:CDS | 35.0% |
| TATACCCATTAGAGTTTGGA+AGG | - | chr4_3:60892595-60892614 | None:intergenic | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | + | chr4_3:60892616-60892635 | Msa0653080:intron | 35.0% | |
| ! | ATGTATATTCTGGAGGATAC+AGG | + | chr4_3:60892657-60892676 | Msa0653080:CDS | 35.0% |
| AGATTATCTAGGCCTTTATG+AGG | + | chr4_3:60892806-60892825 | Msa0653080:CDS | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | - | chr4_3:60893127-60893146 | None:intergenic | 35.0% | |
| AGGTGACATTGCAGTATTAT+TGG | - | chr4_3:60893470-60893489 | None:intergenic | 35.0% | |
| TACTGCAATGTCACCTATAT+TGG | + | chr4_3:60893474-60893493 | Msa0653080:CDS | 35.0% | |
| AAAACGGTATGGTCCAATAT+AGG | - | chr4_3:60893490-60893509 | None:intergenic | 35.0% | |
| ! | TATATTGGACCATACCGTTT+TGG | + | chr4_3:60893489-60893508 | Msa0653080:CDS | 35.0% |
| !! | GTTTTGGTAGATGGTAATGA+TGG | + | chr4_3:60893505-60893524 | Msa0653080:CDS | 35.0% |
| GAAGAGGAATAAAGTTCATG+AGG | - | chr4_3:60891587-60891606 | None:intergenic | 35.0% | |
| ACTTTATTCCTCTTCTCTGA+TGG | + | chr4_3:60891592-60891611 | Msa0653080:CDS | 35.0% | |
| CTTTATTCCTCTTCTCTGAT+GGG | + | chr4_3:60891593-60891612 | Msa0653080:CDS | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | + | chr4_3:60891638-60891657 | Msa0653080:CDS | 35.0% | |
| TCCTCAACTTGGAATTGAAA+GGG | + | chr4_3:60891649-60891668 | Msa0653080:CDS | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | + | chr4_3:60891705-60891724 | Msa0653080:CDS | 35.0% | |
| AACATGTGGAGTTCTTTCTT+GGG | - | chr4_3:60891816-60891835 | None:intergenic | 35.0% | |
| AAACATGTGGAGTTCTTTCT+TGG | - | chr4_3:60891817-60891836 | None:intergenic | 35.0% | |
| AAGAGCGATGTTAAGAACTA+TGG | + | chr4_3:60891983-60892002 | Msa0653080:CDS | 35.0% | |
| !! | TGTGTCACTGTATTTTCGAA+AGG | - | chr4_3:60892281-60892300 | None:intergenic | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | - | chr4_3:60892412-60892431 | None:intergenic | 35.0% |
| ! | ACCTCCCTCTATTTGAATTT+TGG | - | chr4_3:60892413-60892432 | None:intergenic | 35.0% |
| AAAATTCAAATAGAGGGAGG+TGG | + | chr4_3:60892412-60892431 | Msa0653080:intron | 35.0% | |
| !! | AGGGATTGAAGTCATTTTCA+AGG | + | chr4_3:60892463-60892482 | Msa0653080:CDS | 35.0% |
| TATACCCATTAGAGTTTGGA+AGG | - | chr4_3:60892595-60892614 | None:intergenic | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | + | chr4_3:60892616-60892635 | Msa0653080:intron | 35.0% | |
| ! | ATGTATATTCTGGAGGATAC+AGG | + | chr4_3:60892657-60892676 | Msa0653080:CDS | 35.0% |
| AGATTATCTAGGCCTTTATG+AGG | + | chr4_3:60892806-60892825 | Msa0653080:CDS | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | - | chr4_3:60893127-60893146 | None:intergenic | 35.0% | |
| AGGTGACATTGCAGTATTAT+TGG | - | chr4_3:60893470-60893489 | None:intergenic | 35.0% | |
| TACTGCAATGTCACCTATAT+TGG | + | chr4_3:60893474-60893493 | Msa0653080:CDS | 35.0% | |
| AAAACGGTATGGTCCAATAT+AGG | - | chr4_3:60893490-60893509 | None:intergenic | 35.0% | |
| ! | TATATTGGACCATACCGTTT+TGG | + | chr4_3:60893489-60893508 | Msa0653080:CDS | 35.0% |
| !! | GTTTTGGTAGATGGTAATGA+TGG | + | chr4_3:60893505-60893524 | Msa0653080:CDS | 35.0% |
| ! | TTCATGAGGTTGATTCATCG+AGG | - | chr4_3:60891573-60891592 | None:intergenic | 40.0% |
| CTCCTCAACTTGGAATTGAA+AGG | + | chr4_3:60891648-60891667 | Msa0653080:CDS | 40.0% | |
| TCCCTTTCAATTCCAAGTTG+AGG | - | chr4_3:60891653-60891672 | None:intergenic | 40.0% | |
| ACTTGGAATTGAAAGGGAAG+AGG | + | chr4_3:60891655-60891674 | Msa0653080:CDS | 40.0% | |
| TCTGGGCTGTAAAAAACATG+TGG | - | chr4_3:60891830-60891849 | None:intergenic | 40.0% | |
| !!! | CATGTTTTTTACAGCCCAGA+TGG | + | chr4_3:60891830-60891849 | Msa0653080:CDS | 40.0% |
| ! | TTTTTACAGCCCAGATGGAA+AGG | + | chr4_3:60891835-60891854 | Msa0653080:CDS | 40.0% |
| TTACAGTCACCTTTCCATCT+GGG | - | chr4_3:60891847-60891866 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | - | chr4_3:60891848-60891867 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | + | chr4_3:60892409-60892428 | Msa0653080:intron | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | - | chr4_3:60892453-60892472 | None:intergenic | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | - | chr4_3:60892454-60892473 | None:intergenic | 40.0% | |
| ACTTCAATCCCTTCTTTGCT+AGG | - | chr4_3:60892455-60892474 | None:intergenic | 40.0% | |
| ! | CTCCCATGCATAGTTTGTAA+TGG | - | chr4_3:60892788-60892807 | None:intergenic | 40.0% |
| CTATGCATGGGAGATTATCT+AGG | + | chr4_3:60892795-60892814 | Msa0653080:CDS | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | + | chr4_3:60893303-60893322 | Msa0653080:intron | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | - | chr4_3:60893369-60893388 | None:intergenic | 40.0% |
| GGAAAAAGAACCATCAGACT+TGG | + | chr4_3:60893375-60893394 | Msa0653080:CDS | 40.0% | |
| !! | AGTCGACTGAATTTGTTGGT+TGG | - | chr4_3:60893401-60893420 | None:intergenic | 40.0% |
| TACCATCTACCAAAACGGTA+TGG | - | chr4_3:60893501-60893520 | None:intergenic | 40.0% | |
| ! | TTGGTAGATGGTAATGATGG+TGG | + | chr4_3:60893508-60893527 | Msa0653080:CDS | 40.0% |
| ! | TTCATGAGGTTGATTCATCG+AGG | - | chr4_3:60891573-60891592 | None:intergenic | 40.0% |
| CTCCTCAACTTGGAATTGAA+AGG | + | chr4_3:60891648-60891667 | Msa0653080:CDS | 40.0% | |
| TCCCTTTCAATTCCAAGTTG+AGG | - | chr4_3:60891653-60891672 | None:intergenic | 40.0% | |
| ACTTGGAATTGAAAGGGAAG+AGG | + | chr4_3:60891655-60891674 | Msa0653080:CDS | 40.0% | |
| TCTGGGCTGTAAAAAACATG+TGG | - | chr4_3:60891830-60891849 | None:intergenic | 40.0% | |
| !!! | CATGTTTTTTACAGCCCAGA+TGG | + | chr4_3:60891830-60891849 | Msa0653080:CDS | 40.0% |
| ! | TTTTTACAGCCCAGATGGAA+AGG | + | chr4_3:60891835-60891854 | Msa0653080:CDS | 40.0% |
| TTACAGTCACCTTTCCATCT+GGG | - | chr4_3:60891847-60891866 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | - | chr4_3:60891848-60891867 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | + | chr4_3:60892409-60892428 | Msa0653080:intron | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | - | chr4_3:60892453-60892472 | None:intergenic | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | - | chr4_3:60892454-60892473 | None:intergenic | 40.0% | |
| ACTTCAATCCCTTCTTTGCT+AGG | - | chr4_3:60892455-60892474 | None:intergenic | 40.0% | |
| ! | CTCCCATGCATAGTTTGTAA+TGG | - | chr4_3:60892788-60892807 | None:intergenic | 40.0% |
| CTATGCATGGGAGATTATCT+AGG | + | chr4_3:60892795-60892814 | Msa0653080:CDS | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | + | chr4_3:60893303-60893322 | Msa0653080:intron | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | - | chr4_3:60893369-60893388 | None:intergenic | 40.0% |
| GGAAAAAGAACCATCAGACT+TGG | + | chr4_3:60893375-60893394 | Msa0653080:CDS | 40.0% | |
| !! | AGTCGACTGAATTTGTTGGT+TGG | - | chr4_3:60893401-60893420 | None:intergenic | 40.0% |
| TACCATCTACCAAAACGGTA+TGG | - | chr4_3:60893501-60893520 | None:intergenic | 40.0% | |
| ! | TTGGTAGATGGTAATGATGG+TGG | + | chr4_3:60893508-60893527 | Msa0653080:CDS | 40.0% |
| ACTTTGTCCCATCAGAGAAG+AGG | - | chr4_3:60891603-60891622 | None:intergenic | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | - | chr4_3:60892021-60892040 | None:intergenic | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | + | chr4_3:60892025-60892044 | Msa0653080:intron | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | + | chr4_3:60892587-60892606 | Msa0653080:intron | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | + | chr4_3:60892588-60892607 | Msa0653080:intron | 45.0% | |
| ! | TTTGGGAAGTGTGCATTGAC+TGG | - | chr4_3:60893056-60893075 | None:intergenic | 45.0% |
| CATGAACTCTTCTTTGTGCG+AGG | + | chr4_3:60893278-60893297 | Msa0653080:intron | 45.0% | |
| !! | GACCATACCGTTTTGGTAGA+TGG | + | chr4_3:60893496-60893515 | Msa0653080:CDS | 45.0% |
| !! | GTAGATGGTAATGATGGTGG+TGG | + | chr4_3:60893511-60893530 | Msa0653080:CDS | 45.0% |
| CGATGAACAACAAAGCAGCT+TGG | + | chr4_3:60893543-60893562 | Msa0653080:CDS | 45.0% | |
| ACTTTGTCCCATCAGAGAAG+AGG | - | chr4_3:60891603-60891622 | None:intergenic | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | - | chr4_3:60892021-60892040 | None:intergenic | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | + | chr4_3:60892025-60892044 | Msa0653080:intron | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | + | chr4_3:60892587-60892606 | Msa0653080:intron | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | + | chr4_3:60892588-60892607 | Msa0653080:intron | 45.0% | |
| ! | TTTGGGAAGTGTGCATTGAC+TGG | - | chr4_3:60893056-60893075 | None:intergenic | 45.0% |
| CATGAACTCTTCTTTGTGCG+AGG | + | chr4_3:60893278-60893297 | Msa0653080:intron | 45.0% | |
| !! | GACCATACCGTTTTGGTAGA+TGG | + | chr4_3:60893496-60893515 | Msa0653080:CDS | 45.0% |
| !! | GTAGATGGTAATGATGGTGG+TGG | + | chr4_3:60893511-60893530 | Msa0653080:CDS | 45.0% |
| CGATGAACAACAAAGCAGCT+TGG | + | chr4_3:60893543-60893562 | Msa0653080:CDS | 45.0% | |
| !! | TTTAATTAATTATATTTATG+TGG | + | chr4_3:60891869-60891888 | Msa0653080:intron | 5.0% |
| !!! | AATATTAATAACTTTTATAA+AGG | - | chr4_3:60892862-60892881 | None:intergenic | 5.0% |
| !! | TTTAATTAATTATATTTATG+TGG | + | chr4_3:60891869-60891888 | Msa0653080:intron | 5.0% |
| !!! | AATATTAATAACTTTTATAA+AGG | - | chr4_3:60892862-60892881 | None:intergenic | 5.0% |
| CATTGTCCTCCCAAAGGTGA+GGG | + | chr4_3:60892009-60892028 | Msa0653080:intron | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | - | chr4_3:60892022-60892041 | None:intergenic | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | + | chr4_3:60892024-60892043 | Msa0653080:intron | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | + | chr4_3:60892444-60892463 | Msa0653080:CDS | 50.0% | |
| GGCTTGTGATCTATCGACAG+TGG | + | chr4_3:60893324-60893343 | Msa0653080:CDS | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | + | chr4_3:60893349-60893368 | Msa0653080:CDS | 50.0% | |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | - | chr4_3:60893388-60893407 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | - | chr4_3:60893445-60893464 | None:intergenic | 50.0% |
| TGGTTTCTTGGGCGACTGAT+TGG | - | chr4_3:60893450-60893469 | None:intergenic | 50.0% | |
| CATTGTCCTCCCAAAGGTGA+GGG | + | chr4_3:60892009-60892028 | Msa0653080:intron | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | - | chr4_3:60892022-60892041 | None:intergenic | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | + | chr4_3:60892024-60892043 | Msa0653080:intron | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | + | chr4_3:60892444-60892463 | Msa0653080:CDS | 50.0% | |
| GGCTTGTGATCTATCGACAG+TGG | + | chr4_3:60893324-60893343 | Msa0653080:CDS | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | + | chr4_3:60893349-60893368 | Msa0653080:CDS | 50.0% | |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | - | chr4_3:60893388-60893407 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | - | chr4_3:60893445-60893464 | None:intergenic | 50.0% |
| TGGTTTCTTGGGCGACTGAT+TGG | - | chr4_3:60893450-60893469 | None:intergenic | 50.0% | |
| TGGTCGCATTGTCCTCCCAA+AGG | + | chr4_3:60892003-60892022 | Msa0653080:CDS | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | + | chr4_3:60892008-60892027 | Msa0653080:intron | 55.0% | |
| AAGAAGCCCTCACCTTTGGG+AGG | - | chr4_3:60892018-60892037 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | + | chr4_3:60892443-60892462 | Msa0653080:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | - | chr4_3:60892449-60892468 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | + | chr4_3:60893354-60893373 | Msa0653080:CDS | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | - | chr4_3:60893358-60893377 | None:intergenic | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | - | chr4_3:60893442-60893461 | None:intergenic | 55.0% |
| TGGTCGCATTGTCCTCCCAA+AGG | + | chr4_3:60892003-60892022 | Msa0653080:CDS | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | + | chr4_3:60892008-60892027 | Msa0653080:intron | 55.0% | |
| AAGAAGCCCTCACCTTTGGG+AGG | - | chr4_3:60892018-60892037 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | + | chr4_3:60892443-60892462 | Msa0653080:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | - | chr4_3:60892449-60892468 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | + | chr4_3:60893354-60893373 | Msa0653080:CDS | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | - | chr4_3:60893358-60893377 | None:intergenic | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | - | chr4_3:60893442-60893461 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 60891557 | 60893609 | 60891557 | ID=Msa0653080;Name=Msa0653080 |
| chr4_3 | mRNA | 60891557 | 60893609 | 60891557 | ID=Msa0653080-mRNA-1;Parent=Msa0653080;Name=Msa0653080-mRNA-1;_AED=0.11;_eAED=0.17;_QI=0|0|0|1|1|1|6|0|298 |
| chr4_3 | exon | 60891557 | 60891856 | 60891557 | ID=Msa0653080-mRNA-1:exon:16592;Parent=Msa0653080-mRNA-1 |
| chr4_3 | exon | 60891950 | 60892024 | 60891950 | ID=Msa0653080-mRNA-1:exon:16593;Parent=Msa0653080-mRNA-1 |
| chr4_3 | exon | 60892425 | 60892522 | 60892425 | ID=Msa0653080-mRNA-1:exon:16594;Parent=Msa0653080-mRNA-1 |
| chr4_3 | exon | 60892632 | 60892678 | 60892632 | ID=Msa0653080-mRNA-1:exon:16595;Parent=Msa0653080-mRNA-1 |
| chr4_3 | exon | 60892772 | 60892845 | 60892772 | ID=Msa0653080-mRNA-1:exon:16596;Parent=Msa0653080-mRNA-1 |
| chr4_3 | exon | 60893307 | 60893609 | 60893307 | ID=Msa0653080-mRNA-1:exon:16597;Parent=Msa0653080-mRNA-1 |
| chr4_3 | CDS | 60891557 | 60891856 | 60891557 | ID=Msa0653080-mRNA-1:cds;Parent=Msa0653080-mRNA-1 |
| chr4_3 | CDS | 60891950 | 60892024 | 60891950 | ID=Msa0653080-mRNA-1:cds;Parent=Msa0653080-mRNA-1 |
| chr4_3 | CDS | 60892425 | 60892522 | 60892425 | ID=Msa0653080-mRNA-1:cds;Parent=Msa0653080-mRNA-1 |
| chr4_3 | CDS | 60892632 | 60892678 | 60892632 | ID=Msa0653080-mRNA-1:cds;Parent=Msa0653080-mRNA-1 |
| chr4_3 | CDS | 60892772 | 60892845 | 60892772 | ID=Msa0653080-mRNA-1:cds;Parent=Msa0653080-mRNA-1 |
| chr4_3 | CDS | 60893307 | 60893609 | 60893307 | ID=Msa0653080-mRNA-1:cds;Parent=Msa0653080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
