AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0653580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653580 MtrunA17_Chr4g0047931 95.871 557 23 0 1 557 1 557 0.0 1074
Msa0653580 MtrunA17_Chr2g0281431 51.875 480 204 11 95 556 367 837 2.00e-122 380
Msa0653580 MtrunA17_Chr2g0281431 61.455 275 96 5 9 278 4 273 2.47e-93 303
Msa0653580 MtrunA17_Chr2g0281431 56.383 188 73 4 95 278 183 365 4.58e-45 170
Msa0653580 MtrunA17_Chr2g0281431 54.787 188 76 4 95 278 275 457 1.48e-44 169
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653580 AT1G61215.1 60.494 162 56 5 9 166 14 171 1.76e-49 178
Msa0653580 AT1G61215.1 36.795 337 170 13 201 514 111 427 2.75e-34 135
Msa0653580 AT1G61215.2 36.795 337 170 13 201 514 92 408 4.71e-34 135
Msa0653580 AT1G61215.2 55.738 122 47 4 49 166 34 152 7.25e-27 114
Msa0653580 AT2G42150.1 31.148 244 133 6 8 239 15 235 9.31e-18 87.4
Msa0653580 AT2G42150.1 27.820 133 89 3 358 485 273 403 7.19e-12 68.6
Msa0653580 AT3G60110.1 30.625 160 84 2 4 143 47 199 2.00e-15 80.1
Msa0653580 AT2G44430.1 39.655 116 47 3 9 101 50 165 2.97e-14 76.3
Msa0653580 AT3G57980.1 37.815 119 55 2 8 108 15 132 8.01e-14 74.7
Msa0653580 AT3G57980.2 37.815 119 55 2 8 108 15 132 8.17e-14 74.7

Find 150 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGATCTCGCCTGGTGTTTC+AGG 0.123019 4_3:-61639216 Msa0653580:CDS
GAGATTACGCCTGGTGTTTC+AGG 0.146830 4_3:-61638943 Msa0653580:CDS
ACATGTTCCTTCACAGAAAT+TGG 0.179613 4_3:-61639091 Msa0653580:CDS
TTTCCGACGAGCATCTTATT+AGG 0.208989 4_3:-61641905 Msa0653580:five_prime_UTR
ACTCGCTTCATTAATATTTC+TGG 0.224605 4_3:+61638807 None:intergenic
CTGTTGCAATTCTTCATATT+TGG 0.258493 4_3:+61640028 None:intergenic
ACATGGGAGGAGCTTCTTCT+TGG 0.262308 4_3:-61641705 Msa0653580:CDS
CTCATTCTTGTCAGCCTTGA+GGG 0.265381 4_3:+61639434 None:intergenic
CCTTTGCAACATTAATCTTC+TGG 0.292069 4_3:+61637378 None:intergenic
ACCACCAGTACTAGGCTTCT+TGG 0.302528 4_3:+61637313 None:intergenic
CTTATATTGACGGGTGTTCT+TGG 0.307524 4_3:+61637529 None:intergenic
TATAACAAGTTTCAAATCAT+TGG 0.310397 4_3:+61637150 None:intergenic
TTCATAAGATTCGGAGTTGC+AGG 0.312088 4_3:+61637215 None:intergenic
TGTGAAGGAACATGTGATTC+TGG 0.321301 4_3:+61639099 None:intergenic
GAATTGCAACAGCGCTATTC+AGG 0.321488 4_3:-61640017 Msa0653580:CDS
TGTGAAGGAACATCTAATTC+TGG 0.326164 4_3:+61639372 None:intergenic
CCATTTGATATACTTCCTTT+TGG 0.337379 4_3:+61637036 None:intergenic
GGTGAGGTTGTCAAATCTTC+TGG 0.339149 4_3:-61638721 Msa0653580:CDS
TTCCGACGAGCATCTTATTA+GGG 0.353146 4_3:-61641904 Msa0653580:five_prime_UTR
ATTATGGTGTTGAATGCTTT+TGG 0.353330 4_3:+61642241 None:intergenic
ACATGGACTTTGACACTATA+AGG 0.354571 4_3:-61637640 Msa0653580:CDS
TTCATTTCCTTCATAAGATT+CGG 0.356180 4_3:+61637206 None:intergenic
GGAGAACACGAACTTGAAAA+AGG 0.362922 4_3:-61638689 Msa0653580:CDS
GAGAAATCAGAAGATTCAAT+TGG 0.363491 4_3:-61639735 Msa0653580:CDS
AGCAGAGCTTAAGCGAGCTT+TGG 0.364114 4_3:-61639757 Msa0653580:CDS
TCATGTACTATTAAAATTGT+TGG 0.369977 4_3:+61642126 None:intergenic
CAGAAGACATTGCTGGAACT+TGG 0.372442 4_3:+61638974 None:intergenic
AGCATCTTATTAGGGTTAAT+CGG 0.380327 4_3:-61641896 Msa0653580:five_prime_UTR
GACAACCTCACCACAGTTGC+TGG 0.380777 4_3:+61638732 None:intergenic
TTCATTTGATTGAGAGGGAC+AGG 0.387630 4_3:+61642012 None:intergenic
AGAAGGACAAAACAAAACTA+TGG 0.395235 4_3:+61642072 None:intergenic
TGGGAGGAGCTTCTTCTTGG+TGG 0.399007 4_3:-61641702 Msa0653580:CDS
ATTCAAAACTTTCTCATGTT+CGG 0.403224 4_3:+61638915 None:intergenic
AAGAAATTCATTTGATTGAG+AGG 0.403431 4_3:+61642006 None:intergenic
TTCTTGGTGGAGCTGTTATC+CGG 0.405630 4_3:-61641689 Msa0653580:CDS
CATGTACTATTAAAATTGTT+GGG 0.407592 4_3:+61642127 None:intergenic
TCCGGCACGGCACTGGTGAT+TGG 0.416103 4_3:-61641671 Msa0653580:CDS
CACTGCTAGGGCTTGGTATG+AGG 0.418968 4_3:-61639799 Msa0653580:intron
TCTTTACTACCACCAGTACT+AGG 0.419066 4_3:+61637305 None:intergenic
TCAAAGGATGGGCTATCTGC+TGG 0.419315 4_3:-61639312 Msa0653580:CDS
CACATCAAACCGATACAAAC+TGG 0.424104 4_3:-61639281 Msa0653580:CDS
AAAGGAGAGGAAAGAGAAAG+AGG 0.432152 4_3:-61638840 Msa0653580:CDS
TCTAGATTACAGTAACTAAC+TGG 0.434567 4_3:-61637116 Msa0653580:three_prime_UTR
TGATTGAGAGGGACAGGAAA+AGG 0.438254 4_3:+61642018 None:intergenic
ATGTCTTCAGAAGACATTGC+TGG 0.442846 4_3:+61638967 None:intergenic
ATGTCTTCAGAAGACATTGC+TGG 0.442846 4_3:+61639240 None:intergenic
ACATTAATCTTCTGGTTACA+AGG 0.444554 4_3:+61637386 None:intergenic
CAGAAGACATTGCTGGAACC+TGG 0.448111 4_3:+61639247 None:intergenic
TGTCAAAGTCCATGTGTCTC+TGG 0.448970 4_3:+61637648 None:intergenic
AGCGTACACGTGTACGAAGA+TGG 0.450787 4_3:-61641754 Msa0653580:exon
GAAGTGACAACATAGGATAT+TGG 0.458231 4_3:-61637012 None:intergenic
GCTGTTATCCGGCACGGCAC+TGG 0.459398 4_3:-61641678 Msa0653580:CDS
GATGGCAGCGATCCTGCCTC+GGG 0.461840 4_3:-61637350 Msa0653580:CDS
GACAGCTTTCTTGATGTGTA+AGG 0.464881 4_3:+61637259 None:intergenic
CCAAAAGGAAGTATATCAAA+TGG 0.468725 4_3:-61637036 Msa0653580:three_prime_UTR
CGATGGCAGCGATCCTGCCT+CGG 0.469474 4_3:-61637351 Msa0653580:CDS
TAAAGAGAATTCTCCGTCTT+CGG 0.474363 4_3:-61637288 Msa0653580:CDS
AGATCTCGCCTGGTGTTTCA+GGG 0.481234 4_3:-61639215 Msa0653580:CDS
TGGTAGAACTTTCTTTCAGC+CGG 0.484226 4_3:+61638752 None:intergenic
TGGTTACAAGGGCGGACACT+TGG 0.484662 4_3:+61637398 None:intergenic
ACTAAAGAGTTGTCAAAGGA+TGG 0.489392 4_3:-61639324 Msa0653580:CDS
AGAAATCAGAAGATTCAATT+GGG 0.490341 4_3:-61639734 Msa0653580:intron
ACCAATCACCAGTGCCGTGC+CGG 0.491886 4_3:+61641670 None:intergenic
AAATGAAGGAAAAGAAAAGA+CGG 0.493555 4_3:-61637190 Msa0653580:CDS
CTTGTTGACAACAACTCAGT+TGG 0.494073 4_3:-61639396 Msa0653580:CDS
AGAAATTCATTTGATTGAGA+GGG 0.495890 4_3:+61642007 None:intergenic
AGCACCGGGTGCGTAGGATT+AGG 0.496693 4_3:-61641816 Msa0653580:five_prime_UTR
AGATTACGCCTGGTGTTTCA+GGG 0.501278 4_3:-61638942 Msa0653580:CDS
AAAAGAAAAGACGGAGAACT+AGG 0.503354 4_3:-61637181 Msa0653580:CDS
TCTCATTCTTGTCAGCCTTG+AGG 0.505573 4_3:+61639433 None:intergenic
TGGTTTCAATCAATAGGTAG+TGG 0.509373 4_3:+61642186 None:intergenic
CTGTCGCAAGCATGATAGCC+AGG 0.522128 4_3:-61638602 Msa0653580:intron
GAAGACATGGAGATCTCGCC+TGG 0.524803 4_3:-61639225 Msa0653580:CDS
AGCGGAAGTGATTGTGACGT+GGG 0.526318 4_3:-61641730 Msa0653580:CDS
ACTAAAGAGACGTCAAAGGA+TGG 0.530356 4_3:-61639051 Msa0653580:CDS
GATAAGTTGACAGATACAGC+TGG 0.532080 4_3:-61639162 Msa0653580:CDS
GAGAGGAAAGAGAAAGAGGA+AGG 0.532691 4_3:-61638836 Msa0653580:CDS
GAATCTTATGAAGGAAATGA+AGG 0.534107 4_3:-61637204 Msa0653580:CDS
GGTAGAACTTTCTTTCAGCC+GGG 0.535651 4_3:+61638753 None:intergenic
TCAAAGGATGGGTTATCTGC+TGG 0.536634 4_3:-61639039 Msa0653580:CDS
ACTCTCTCCAATTTCTGTGA+AGG 0.536812 4_3:+61639084 None:intergenic
GGTTACAAGGGCGGACACTT+GGG 0.540653 4_3:+61637399 None:intergenic
CAACAAAACAATTGATTCAG+TGG 0.544548 4_3:-61637606 Msa0653580:CDS
TCGTCGCGGCGGAGCTCCGA+GGG 0.544805 4_3:-61641644 Msa0653580:CDS
AAACTGGTCTCATGAATGCC+AGG 0.546467 4_3:-61639265 Msa0653580:CDS
GTAGAACAGCAAAGCATTGG+TGG 0.547197 4_3:+61637553 None:intergenic
TCGGAGCTCCGCCGCGACGA+CGG 0.548546 4_3:+61641647 None:intergenic
TGCAACTCCGAATCTTATGA+AGG 0.548743 4_3:-61637213 Msa0653580:CDS
CAAAGGATGGGCTATCTGCT+GGG 0.550496 4_3:-61639311 Msa0653580:CDS
TTCATGAGACCAGTTTGTAT+CGG 0.551753 4_3:+61639272 None:intergenic
CCAGAAGATTAATGTTGCAA+AGG 0.552998 4_3:-61637378 Msa0653580:CDS
GGAGTAGAACAGCAAAGCAT+TGG 0.553418 4_3:+61637550 None:intergenic
GGCTCCTAATCCTACGCACC+CGG 0.554751 4_3:+61641812 None:intergenic
AAAGGAATGAGGTAAGAAGA+AGG 0.558708 4_3:+61642055 None:intergenic
TTATTAGGGTTAATCGGAGA+AGG 0.560583 4_3:-61641890 Msa0653580:five_prime_UTR
AAAGCCAAGAAGCCTAGTAC+TGG 0.562628 4_3:-61637317 Msa0653580:CDS
GTCGTCGCGGCGGAGCTCCG+AGG 0.563753 4_3:-61641645 Msa0653580:CDS
GAAGACATGGAGATTACGCC+TGG 0.563944 4_3:-61638952 Msa0653580:CDS
CGAGGCAGGATCGCTGCCAT+CGG 0.565755 4_3:+61637352 None:intergenic
ACACTTGGGACTTTCAAAGA+AGG 0.569561 4_3:+61637413 None:intergenic
CTAAAGAGTTGTCAAAGGAT+GGG 0.572945 4_3:-61639323 Msa0653580:CDS
TGTAAGGATTTCACCGAAGA+CGG 0.573201 4_3:+61637275 None:intergenic
GCGTACACGTGTACGAAGAT+GGG 0.575736 4_3:-61641753 Msa0653580:exon
TAGTGCAGACTTATATTGAC+GGG 0.575938 4_3:+61637520 None:intergenic
GGTGTAATAGCGGAAGGAGA+AGG 0.576294 4_3:+61641615 None:intergenic
GGTGGAGCTGTTATCCGGCA+CGG 0.577297 4_3:-61641684 Msa0653580:CDS
ACTCTCTCTAATTTCTGTGA+AGG 0.579129 4_3:+61639357 None:intergenic
GGATGGAACGAAAGATCTGA+TGG 0.581786 4_3:-61638668 Msa0653580:CDS
CTAAAGAGACGTCAAAGGAT+GGG 0.581958 4_3:-61639050 Msa0653580:CDS
AGCAATGTCTTCTGAAGACA+TGG 0.586266 4_3:-61638965 Msa0653580:CDS
AGCAATGTCTTCTGAAGACA+TGG 0.586266 4_3:-61639238 Msa0653580:CDS
ACCTCGGGTGTAATAGCGGA+AGG 0.590376 4_3:+61641609 None:intergenic
TTCTACTAAAGAGTTGTCAA+AGG 0.593159 4_3:-61639328 Msa0653580:CDS
AACCCTAATAAGATGCTCGT+CGG 0.594773 4_3:+61641902 None:intergenic
AACGTTAGCACCGGGTGCGT+AGG 0.596185 4_3:-61641822 Msa0653580:five_prime_UTR
AAGGAGAAGGAGTTCTCCCT+CGG 0.596440 4_3:+61641628 None:intergenic
TTTGATAGCAGAAGCGACAA+AGG 0.602191 4_3:-61637685 Msa0653580:intron
TCCTTCCGCTATTACACCCG+AGG 0.606450 4_3:-61641610 Msa0653580:intron
ATCAAAGCTTGAATCCCTCA+AGG 0.606788 4_3:-61639448 Msa0653580:CDS
TTGACAGAGACTGTATATGA+AGG 0.607121 4_3:-61638883 Msa0653580:CDS
GAGCGGAAGTGATTGTGACG+TGG 0.615869 4_3:-61641731 Msa0653580:CDS
CATTAATCTTCTGGTTACAA+GGG 0.620404 4_3:+61637387 None:intergenic
CACATCAAGAAAGCTGTCGG+TGG 0.621814 4_3:-61637254 Msa0653580:CDS
AAATGGAGAAGTGACAACAT+AGG 0.622736 4_3:-61637019 Msa0653580:three_prime_UTR
TGGTGATTGGTCCGTCGTCG+CGG 0.623067 4_3:-61641658 Msa0653580:CDS
AGATTACAGTAACTAACTGG+TGG 0.627243 4_3:-61637113 Msa0653580:three_prime_UTR
GAAAGTTCTACCAGCAACTG+TGG 0.627439 4_3:-61638742 Msa0653580:CDS
GCCAAGAAGCCTAGTACTGG+TGG 0.629237 4_3:-61637314 Msa0653580:CDS
TCAATAGACCCTGAAACACC+AGG 0.632152 4_3:+61639207 None:intergenic
TTCAACTAAAGAGACGTCAA+AGG 0.633541 4_3:-61639055 Msa0653580:CDS
GTAGTGCAGACTTATATTGA+CGG 0.634239 4_3:+61637519 None:intergenic
TCGGTTGACCCTGAAACACC+AGG 0.635035 4_3:+61638934 None:intergenic
TAATCTTCTGGTTACAAGGG+CGG 0.635573 4_3:+61637390 None:intergenic
TTAGGGTTAATCGGAGAAGG+TGG 0.636183 4_3:-61641887 Msa0653580:five_prime_UTR
TTCTACCAGCAACTGTGGTG+AGG 0.636519 4_3:-61638737 Msa0653580:CDS
CAAATCTTCTGGTGTAACTG+AGG 0.640200 4_3:-61638710 Msa0653580:CDS
TTACACATCAAGAAAGCTGT+CGG 0.641394 4_3:-61637257 Msa0653580:CDS
TATTACCTCGGGTGTAATAG+CGG 0.641692 4_3:+61641605 None:intergenic
ATAAGTTGACAGATACAGCT+GGG 0.644236 4_3:-61639161 Msa0653580:CDS
AATGTTGCAAAGGTAGCCGA+TGG 0.645708 4_3:-61637368 Msa0653580:CDS
GCGGAAGTGATTGTGACGTG+GGG 0.650849 4_3:-61641729 Msa0653580:CDS
TGGCAGCGATCCTGCCTCGG+GGG 0.651961 4_3:-61637348 Msa0653580:CDS
ATGGCAGCGATCCTGCCTCG+GGG 0.654156 4_3:-61637349 Msa0653580:CDS
GAGACTGTATATGAAGGACA+TGG 0.658527 4_3:-61638877 Msa0653580:CDS
CTGTATATGAAGGACATGGA+GGG 0.672772 4_3:-61638873 Msa0653580:CDS
GCAGTTAATCCAGAGACACA+TGG 0.675440 4_3:-61637657 Msa0653580:CDS
ACTGTATATGAAGGACATGG+AGG 0.676971 4_3:-61638874 Msa0653580:CDS
CACGTGTACGAAGATGGGAG+CGG 0.678942 4_3:-61641748 Msa0653580:exon
CGGAAGTGATTGTGACGTGG+GGG 0.689342 4_3:-61641728 Msa0653580:CDS
TGATTGGTCCGTCGTCGCGG+CGG 0.715637 4_3:-61641655 Msa0653580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAAATATTTTTTTTA+AGG + chr4_3:61637953-61637972 None:intergenic 0.0%
!! ATTCAAACATAATTTAATAT+TGG - chr4_3:61637747-61637766 Msa0653580:intron 10.0%
!!! TTTTTATCATAAACTAAATT+GGG + chr4_3:61637908-61637927 None:intergenic 10.0%
!!! TTTTTTATCATAAACTAAAT+TGG + chr4_3:61637909-61637928 None:intergenic 10.0%
!! AAAATGCTAAAATATATTAA+TGG - chr4_3:61638575-61638594 Msa0653580:intron 10.0%
!!! CATAGTTTTTTTTTTTTTAT+TGG - chr4_3:61638729-61638748 Msa0653580:CDS 10.0%
!!! TCTTTTTATTTAAATATGTT+AGG + chr4_3:61638909-61638928 None:intergenic 10.0%
!! AACATATTTAAATAAAAAGA+TGG - chr4_3:61638909-61638928 Msa0653580:CDS 10.0%
!!! TAATGAAATATTTCTATTTT+AGG + chr4_3:61641087-61641106 None:intergenic 10.0%
!! TTATTGAATTGAATTGAATA+TGG - chr4_3:61638281-61638300 Msa0653580:intron 15.0%
!!! ATTTTTCATTCATTTTCAAA+TGG - chr4_3:61638605-61638624 Msa0653580:CDS 15.0%
!!! TTTTTCATTCATTTTCAAAT+GGG - chr4_3:61638606-61638625 Msa0653580:CDS 15.0%
!! CATTGTATTATATGATAATA+TGG - chr4_3:61639438-61639457 Msa0653580:CDS 15.0%
!!! TACTATTATGTTTCTATATT+TGG - chr4_3:61640976-61640995 Msa0653580:intron 15.0%
!! AATTTGGATGATTATAAATT+GGG - chr4_3:61641022-61641041 Msa0653580:intron 15.0%
!! GATATAGTTGAAATTTATAA+GGG + chr4_3:61641281-61641300 None:intergenic 15.0%
!! AGATATAGTTGAAATTTATA+AGG + chr4_3:61641282-61641301 None:intergenic 15.0%
!!! TTTTTTTGGTTTCAATCAAT+AGG + chr4_3:61637083-61637102 None:intergenic 20.0%
!! CATGTACTATTAAAATTGTT+GGG + chr4_3:61637136-61637155 None:intergenic 20.0%
!! TCATGTACTATTAAAATTGT+TGG + chr4_3:61637137-61637156 None:intergenic 20.0%
!!! AAGGTTTGAAATTGAAAAAA+AGG + chr4_3:61637226-61637245 None:intergenic 20.0%
!!! GGTGTTTTTTTTTTCAATTT+AGG - chr4_3:61637394-61637413 Msa0653580:CDS 20.0%
!!! GTTTTTTTTTTCAATTTAGG+AGG - chr4_3:61637397-61637416 Msa0653580:CDS 20.0%
!! ACCATGTAATAATAATGTAA+CGG + chr4_3:61637787-61637806 None:intergenic 20.0%
!! ATTTAACTCGTTATAATAGA+GGG + chr4_3:61638051-61638070 None:intergenic 20.0%
!! ATACAACAAATTGAATAAAG+TGG + chr4_3:61638422-61638441 None:intergenic 20.0%
!! CATTATATCATATATGCATA+TGG - chr4_3:61638442-61638461 Msa0653580:intron 20.0%
!!! TTGTTCTAAGTATTTGTTAA+CGG - chr4_3:61638493-61638512 Msa0653580:intron 20.0%
!!! GTTTATTTTGTTCCTAAATT+TGG - chr4_3:61639141-61639160 Msa0653580:CDS 20.0%
!! AATAAAATCAACAGTTGAAA+AGG + chr4_3:61639175-61639194 None:intergenic 20.0%
!! AAACTGAAAAATCAACTAAA+GGG + chr4_3:61640708-61640727 None:intergenic 20.0%
!! AAAACTGAAAAATCAACTAA+AGG + chr4_3:61640709-61640728 None:intergenic 20.0%
!!! GTAATGTTTTTGATGATAAT+AGG - chr4_3:61640738-61640757 Msa0653580:intron 20.0%
!! TATTAAAGATGAAATGCAAA+TGG + chr4_3:61640779-61640798 None:intergenic 20.0%
!!! TATTTTTTTTCTTCCACATT+AGG - chr4_3:61640801-61640820 Msa0653580:intron 20.0%
!!! TTTTCCAAAATAAGTTTGTT+TGG + chr4_3:61640910-61640929 None:intergenic 20.0%
!! CAATTTATAATCATCCAAAT+TGG + chr4_3:61641023-61641042 None:intergenic 20.0%
!! CAATTTGGATGATTATAAAT+TGG - chr4_3:61641021-61641040 Msa0653580:intron 20.0%
!!! CAAATGTAGAAACTTTTTAT+TGG + chr4_3:61641219-61641238 None:intergenic 20.0%
!!! TTTTTCGTCAATGTAAATAT+AGG - chr4_3:61641323-61641342 Msa0653580:intron 20.0%
!!! TTTTCGTCAATGTAAATATA+GGG - chr4_3:61641324-61641343 Msa0653580:intron 20.0%
!! TATAACAAGTTTCAAATCAT+TGG + chr4_3:61642113-61642132 None:intergenic 20.0%
!!! TTATTTTTGTTTTTGCCAAA+AGG - chr4_3:61642209-61642228 Msa0653580:five_prime_UTR 20.0%
!! TTTTTGTGAAATGACGATTA+TGG + chr4_3:61637038-61637057 None:intergenic 25.0%
!!! AATAGGTAGTGGTTTTTATT+TGG + chr4_3:61637066-61637085 None:intergenic 25.0%
! GAAATTGAAAAAAAGGAATG+AGG + chr4_3:61637219-61637238 None:intergenic 25.0%
! AGAAATTCATTTGATTGAGA+GGG + chr4_3:61637256-61637275 None:intergenic 25.0%
! AAGAAATTCATTTGATTGAG+AGG + chr4_3:61637257-61637276 None:intergenic 25.0%
!!! TTCCTTTTTTTTCTTTGTCA+GGG + chr4_3:61637284-61637303 None:intergenic 25.0%
!!! TTTCCTTTTTTTTCTTTGTC+AGG + chr4_3:61637285-61637304 None:intergenic 25.0%
!!! TTTTTTTCAATTTAGGAGGT+CGG - chr4_3:61637401-61637420 Msa0653580:CDS 25.0%
! AGTGGAATATTATATTACCT+CGG + chr4_3:61637670-61637689 None:intergenic 25.0%
! ACCGTTACATTATTATTACA+TGG - chr4_3:61637783-61637802 Msa0653580:intron 25.0%
! AGTTTAATGAATTGTCAATC+AGG + chr4_3:61637813-61637832 None:intergenic 25.0%
! GATTTAACTCGTTATAATAG+AGG + chr4_3:61638052-61638071 None:intergenic 25.0%
! TTATTATTGCTCACATTCTT+CGG + chr4_3:61638224-61638243 None:intergenic 25.0%
!!! AACAAAAAGAGTGTTCTATT+TGG - chr4_3:61638331-61638350 Msa0653580:intron 25.0%
! ATAACTTAGCATAGTAATTG+AGG + chr4_3:61638681-61638700 None:intergenic 25.0%
! ATTACTATGCTAAGTTATGT+TGG - chr4_3:61638683-61638702 Msa0653580:CDS 25.0%
! CTAAATCTCAATTGTTTCAT+AGG - chr4_3:61638826-61638845 Msa0653580:CDS 25.0%
! ACAAACATTTCTAAGTTCTA+AGG - chr4_3:61638863-61638882 Msa0653580:CDS 25.0%
! GAAATAAAGAATGATAAGAG+TGG + chr4_3:61639070-61639089 None:intergenic 25.0%
! ACAAAATAAACCTAACAAGA+AGG + chr4_3:61639132-61639151 None:intergenic 25.0%
!!! TAGTGAATTATCATTTTTGC+AGG - chr4_3:61639200-61639219 Msa0653580:CDS 25.0%
!! TTGTTTAAATTTTCCCAACT+TGG - chr4_3:61639301-61639320 Msa0653580:CDS 25.0%
! TACAATGAGATATACTATAC+AGG + chr4_3:61639425-61639444 None:intergenic 25.0%
! AGAAATCAGAAGATTCAATT+GGG - chr4_3:61639526-61639545 Msa0653580:intron 25.0%
!! TAACTATACATCTTTGTTTC+AGG - chr4_3:61639781-61639800 Msa0653580:CDS 25.0%
! ATTCAAAACTTTCTCATGTT+CGG + chr4_3:61640075-61640094 None:intergenic 25.0%
!!! GATTCTGTTTTGGAAATTAA+AGG - chr4_3:61640623-61640642 Msa0653580:intron 25.0%
! TATCATCAAAAACATTACTG+AGG + chr4_3:61640736-61640755 None:intergenic 25.0%
!! AAATTTTTCATTGCCTAATG+TGG + chr4_3:61640817-61640836 None:intergenic 25.0%
! ACATTAGGCAATGAAAAATT+TGG - chr4_3:61640816-61640835 Msa0653580:intron 25.0%
!!! TTTTCCAAAATTAGTCTGTT+TGG + chr4_3:61640866-61640885 None:intergenic 25.0%
!! TGAACCAAACAAACTTATTT+TGG - chr4_3:61640903-61640922 Msa0653580:intron 25.0%
!!! ACATGAAACTAGTTTTTGTT+TGG + chr4_3:61640946-61640965 None:intergenic 25.0%
!! TCTTTTGATCCTTTTATTCT+TGG - chr4_3:61641352-61641371 Msa0653580:intron 25.0%
! AGATTCAAACCAAGAATAAA+AGG + chr4_3:61641364-61641383 None:intergenic 25.0%
! TCGTAAACAATTTCAAAAGT+AGG + chr4_3:61641495-61641514 None:intergenic 25.0%
!!! CTTTTGAAATTGTTTACGAA+TGG - chr4_3:61641496-61641515 Msa0653580:intron 25.0%
! TATTGTCAAAGAAAAACTGA+CGG - chr4_3:61641774-61641793 Msa0653580:five_prime_UTR 25.0%
! TTCATTTCCTTCATAAGATT+CGG + chr4_3:61642057-61642076 None:intergenic 25.0%
! AAATGAAGGAAAAGAAAAGA+CGG - chr4_3:61642070-61642089 Msa0653580:five_prime_UTR 25.0%
!! ATTATGGTGTTGAATGCTTT+TGG + chr4_3:61637022-61637041 None:intergenic 30.0%
AGAAGGACAAAACAAAACTA+TGG + chr4_3:61637191-61637210 None:intergenic 30.0%
!!! TCCTTTTTTTTCTTTGTCAG+GGG + chr4_3:61637283-61637302 None:intergenic 30.0%
!!! AATGTGGTTTTGTCAATTCT+GGG + chr4_3:61637328-61637347 None:intergenic 30.0%
!!! AAATGTGGTTTTGTCAATTC+TGG + chr4_3:61637329-61637348 None:intergenic 30.0%
AGCATCTTATTAGGGTTAAT+CGG - chr4_3:61637364-61637383 Msa0653580:CDS 30.0%
!!! TTTTTTGTTAACGTTAGCAC+CGG - chr4_3:61637429-61637448 Msa0653580:CDS 30.0%
!!! AACACCACTTGTTTTTTTCA+AGG + chr4_3:61637472-61637491 None:intergenic 30.0%
GTGGAATATTATATTACCTC+GGG + chr4_3:61637669-61637688 None:intergenic 30.0%
TTAATGAATTGTCAATCAGG+AGG + chr4_3:61637810-61637829 None:intergenic 30.0%
! ATCAGAGTAAAAACCCATTT+TGG - chr4_3:61637862-61637881 Msa0653580:intron 30.0%
! TCTAACAGCTTGATTTTGTT+AGG - chr4_3:61638070-61638089 Msa0653580:intron 30.0%
! CTAACAGCTTGATTTTGTTA+GGG - chr4_3:61638071-61638090 Msa0653580:intron 30.0%
TAAATTGCAAGTCTCTATTC+TGG - chr4_3:61638095-61638114 Msa0653580:intron 30.0%
! CTCTATTCTGGCTATTAATT+CGG - chr4_3:61638107-61638126 Msa0653580:intron 30.0%
AAAATTGTGTTCTCTTGACA+AGG - chr4_3:61638162-61638181 Msa0653580:intron 30.0%
TTAAAGCAATGCATGATGTA+TGG - chr4_3:61638308-61638327 Msa0653580:intron 30.0%
! TTTTGCGTATACAATGGTTA+TGG - chr4_3:61638362-61638381 Msa0653580:intron 30.0%
TTTGCGTATACAATGGTTAT+GGG - chr4_3:61638363-61638382 Msa0653580:intron 30.0%
ATATATGCATATGGTTGTTG+AGG - chr4_3:61638451-61638470 Msa0653580:intron 30.0%
ATGTGCTTAAAATAGAGGTT+TGG + chr4_3:61638519-61638538 None:intergenic 30.0%
!! AAACCTCTATTTTAAGCACA+TGG - chr4_3:61638518-61638537 Msa0653580:intron 30.0%
!!! AGTTCTAAGGAACTTTTCAT+TGG - chr4_3:61638876-61638895 Msa0653580:CDS 30.0%
CTGTTGCAATTCTTCATATT+TGG + chr4_3:61639235-61639254 None:intergenic 30.0%
GAGAAATCAGAAGATTCAAT+TGG - chr4_3:61639525-61639544 Msa0653580:intron 30.0%
GACATAATCTCAGCTTAAAA+AGG + chr4_3:61639574-61639593 None:intergenic 30.0%
TGTGTGTAAACCTATAGATT+TGG + chr4_3:61639665-61639684 None:intergenic 30.0%
TTCTACTAAAGAGTTGTCAA+AGG - chr4_3:61639932-61639951 Msa0653580:intron 30.0%
!!! ATGGAGGGTGTTTTAAAAAA+AGG - chr4_3:61640402-61640421 Msa0653580:intron 30.0%
ACTCGCTTCATTAATATTTC+TGG + chr4_3:61640456-61640475 None:intergenic 30.0%
!! ATTTTTCAATTGATGTGTCC+CGG - chr4_3:61640489-61640508 Msa0653580:intron 30.0%
! TGAACCAAACAGACTAATTT+TGG - chr4_3:61640859-61640878 Msa0653580:intron 30.0%
! CAACAAAACAATTGATTCAG+TGG - chr4_3:61641654-61641673 Msa0653580:CDS 30.0%
! CATTAATCTTCTGGTTACAA+GGG + chr4_3:61641876-61641895 None:intergenic 30.0%
! ACATTAATCTTCTGGTTACA+AGG + chr4_3:61641877-61641896 None:intergenic 30.0%
GAATCTTATGAAGGAAATGA+AGG - chr4_3:61642056-61642075 Msa0653580:five_prime_UTR 30.0%
TCTAGATTACAGTAACTAAC+TGG - chr4_3:61642144-61642163 Msa0653580:five_prime_UTR 30.0%
! CCATTTGATATACTTCCTTT+TGG + chr4_3:61642227-61642246 None:intergenic 30.0%
! CCAAAAGGAAGTATATCAAA+TGG - chr4_3:61642224-61642243 Msa0653580:five_prime_UTR 30.0%
TGGTTTCAATCAATAGGTAG+TGG + chr4_3:61637077-61637096 None:intergenic 35.0%
AAAGGAATGAGGTAAGAAGA+AGG + chr4_3:61637208-61637227 None:intergenic 35.0%
ACCCCTGACAAAGAAAAAAA+AGG - chr4_3:61637279-61637298 Msa0653580:CDS 35.0%
CGTCGGAAAATTGAAAAATG+TGG + chr4_3:61637344-61637363 None:intergenic 35.0%
TTATTAGGGTTAATCGGAGA+AGG - chr4_3:61637370-61637389 Msa0653580:CDS 35.0%
! TTTTTGTTAACGTTAGCACC+GGG - chr4_3:61637430-61637449 Msa0653580:CDS 35.0%
! AACGTGTTTTGCGTATACAA+TGG - chr4_3:61638356-61638375 Msa0653580:intron 35.0%
AAGCCATGTGCTTAAAATAG+AGG + chr4_3:61638524-61638543 None:intergenic 35.0%
!! TCTATTTTAAGCACATGGCT+TGG - chr4_3:61638523-61638542 Msa0653580:intron 35.0%
AAAGATGGTGTATAACCATG+TGG - chr4_3:61638924-61638943 Msa0653580:CDS 35.0%
TCATTGAGACATAAACCACA+TGG + chr4_3:61638993-61639012 None:intergenic 35.0%
TTTATGTCTCAATGAGTGTG+CGG - chr4_3:61638998-61639017 Msa0653580:CDS 35.0%
! TGCTACTTACATTGATGAGA+TGG - chr4_3:61639036-61639055 Msa0653580:CDS 35.0%
TAAACCTAACAAGAAGGCTT+TGG + chr4_3:61639126-61639145 None:intergenic 35.0%
AAGGCATGTGTTCCAAATTT+AGG + chr4_3:61639156-61639175 None:intergenic 35.0%
AAAAGATGTACTGCCAAGTT+GGG + chr4_3:61639317-61639336 None:intergenic 35.0%
AAAAAGATGTACTGCCAAGT+TGG + chr4_3:61639318-61639337 None:intergenic 35.0%
TATGATAATATGGCACTGCT+AGG - chr4_3:61639448-61639467 Msa0653580:CDS 35.0%
ATGATAATATGGCACTGCTA+GGG - chr4_3:61639449-61639468 Msa0653580:CDS 35.0%
GAAATGTCGACCAAATCTAT+AGG - chr4_3:61639652-61639671 Msa0653580:intron 35.0%
AGATTTCTATGATCCACTGT+TGG - chr4_3:61639735-61639754 Msa0653580:CDS 35.0%
! ATCCACTGTTGGATTTTCAT+CGG - chr4_3:61639746-61639765 Msa0653580:CDS 35.0%
!!! TGTTGGATTTTCATCGGTTT+GGG - chr4_3:61639752-61639771 Msa0653580:CDS 35.0%
TGTGAAGGAACATCTAATTC+TGG + chr4_3:61639891-61639910 None:intergenic 35.0%
ACTCTCTCTAATTTCTGTGA+AGG + chr4_3:61639906-61639925 None:intergenic 35.0%
ACTAAAGAGTTGTCAAAGGA+TGG - chr4_3:61639936-61639955 Msa0653580:intron 35.0%
CTAAAGAGTTGTCAAAGGAT+GGG - chr4_3:61639937-61639956 Msa0653580:intron 35.0%
TTCATGAGACCAGTTTGTAT+CGG + chr4_3:61639991-61640010 None:intergenic 35.0%
! ATAAGTTGACAGATACAGCT+GGG - chr4_3:61640099-61640118 Msa0653580:intron 35.0%
ACATGTTCCTTCACAGAAAT+TGG - chr4_3:61640169-61640188 Msa0653580:intron 35.0%
TTCAACTAAAGAGACGTCAA+AGG - chr4_3:61640205-61640224 Msa0653580:intron 35.0%
! TTCTTGAGACCAGTTTTTCT+GGG + chr4_3:61640264-61640283 None:intergenic 35.0%
! ATTCTTGAGACCAGTTTTTC+TGG + chr4_3:61640265-61640284 None:intergenic 35.0%
TTGACAGAGACTGTATATGA+AGG - chr4_3:61640377-61640396 Msa0653580:intron 35.0%
!!! GGGTGTTTTAAAAAAAGGAG+AGG - chr4_3:61640407-61640426 Msa0653580:intron 35.0%
AACACGAACTTGAAAAAGGA+TGG - chr4_3:61640575-61640594 Msa0653580:intron 35.0%
! GGCGATTTTAGATTCTGTTT+TGG - chr4_3:61640613-61640632 Msa0653580:intron 35.0%
TGCAAATGGCAATAAACTAG+TGG + chr4_3:61640765-61640784 None:intergenic 35.0%
!! TCATGTTAACTTGTGTCCTA+AGG - chr4_3:61641045-61641064 Msa0653580:intron 35.0%
!! CATGTTAACTTGTGTCCTAA+GGG - chr4_3:61641046-61641065 Msa0653580:intron 35.0%
!! ACTCATTAACTTGTGCCTTT+AGG - chr4_3:61641239-61641258 Msa0653580:intron 35.0%
!! CTCATTAACTTGTGCCTTTA+GGG - chr4_3:61641240-61641259 Msa0653580:intron 35.0%
!! AATGTTAACTTGTGCCCTAA+AGG + chr4_3:61641257-61641276 None:intergenic 35.0%
ACATGGACTTTGACACTATA+AGG - chr4_3:61641620-61641639 Msa0653580:CDS 35.0%
TAGTGCAGACTTATATTGAC+GGG + chr4_3:61641743-61641762 None:intergenic 35.0%
GTAGTGCAGACTTATATTGA+CGG + chr4_3:61641744-61641763 None:intergenic 35.0%
CCTTTGCAACATTAATCTTC+TGG + chr4_3:61641885-61641904 None:intergenic 35.0%
CCAGAAGATTAATGTTGCAA+AGG - chr4_3:61641882-61641901 Msa0653580:five_prime_UTR 35.0%
TAAAGAGAATTCTCCGTCTT+CGG - chr4_3:61641972-61641991 Msa0653580:five_prime_UTR 35.0%
TTACACATCAAGAAAGCTGT+CGG - chr4_3:61642003-61642022 Msa0653580:five_prime_UTR 35.0%
AAAAGAAAAGACGGAGAACT+AGG - chr4_3:61642079-61642098 Msa0653580:five_prime_UTR 35.0%
AGATTACAGTAACTAACTGG+TGG - chr4_3:61642147-61642166 Msa0653580:five_prime_UTR 35.0%
AAATGGAGAAGTGACAACAT+AGG - chr4_3:61642241-61642260 Msa0653580:five_prime_UTR 35.0%
TTCATTTGATTGAGAGGGAC+AGG + chr4_3:61637251-61637270 None:intergenic 40.0%
!!! TGGTTTTGTCAATTCTGGGT+GGG + chr4_3:61637324-61637343 None:intergenic 40.0%
TTTCCGACGAGCATCTTATT+AGG - chr4_3:61637355-61637374 Msa0653580:CDS 40.0%
TTCCGACGAGCATCTTATTA+GGG - chr4_3:61637356-61637375 Msa0653580:CDS 40.0%
AACCCTAATAAGATGCTCGT+CGG + chr4_3:61637361-61637380 None:intergenic 40.0%
GGAGCCTTGAAAAAAACAAG+TGG - chr4_3:61637465-61637484 Msa0653580:CDS 40.0%
TATTACCTCGGGTGTAATAG+CGG + chr4_3:61637658-61637677 None:intergenic 40.0%
CAAGAGCAAAGGACCAAAAT+GGG + chr4_3:61637878-61637897 None:intergenic 40.0%
!! CATTTTGGTCCTTTGCTCTT+GGG - chr4_3:61637877-61637896 Msa0653580:intron 40.0%
! TCACGTGGTACCAATTGTTT+TGG - chr4_3:61638392-61638411 Msa0653580:intron 40.0%
AAGTGGCGAACCAAAACAAT+TGG + chr4_3:61638405-61638424 None:intergenic 40.0%
TATGCATATGGTTGTTGAGG+TGG - chr4_3:61638454-61638473 Msa0653580:intron 40.0%
! AGAACACGAGCATGTGTTTT+AGG + chr4_3:61638553-61638572 None:intergenic 40.0%
! ACCATGTGGTTTGTGATTGT+TGG - chr4_3:61638938-61638957 Msa0653580:CDS 40.0%
ACCAACAATCACAAACCACA+TGG + chr4_3:61638942-61638961 None:intergenic 40.0%
TCAGAGTCTCTATAACCATG+TGG - chr4_3:61638975-61638994 Msa0653580:CDS 40.0%
TATGCCAAAGCCTTCTTGTT+AGG - chr4_3:61639119-61639138 Msa0653580:CDS 40.0%
AACCGATGAAAATCCAACAG+TGG + chr4_3:61639751-61639770 None:intergenic 40.0%
!! CTGTTGGATTTTCATCGGTT+TGG - chr4_3:61639751-61639770 Msa0653580:CDS 40.0%
ATCAAAGCTTGAATCCCTCA+AGG - chr4_3:61639812-61639831 Msa0653580:intron 40.0%
CTTGTTGACAACAACTCAGT+TGG - chr4_3:61639864-61639883 Msa0653580:intron 40.0%
CACATCAAACCGATACAAAC+TGG - chr4_3:61639979-61639998 Msa0653580:intron 40.0%
ATGTCTTCAGAAGACATTGC+TGG + chr4_3:61640023-61640042 None:intergenic 40.0%
! AGCAATGTCTTCTGAAGACA+TGG - chr4_3:61640022-61640041 Msa0653580:CDS 40.0%
! GATAAGTTGACAGATACAGC+TGG - chr4_3:61640098-61640117 Msa0653580:intron 40.0%
TGTGAAGGAACATGTGATTC+TGG + chr4_3:61640164-61640183 None:intergenic 40.0%
ACTCTCTCCAATTTCTGTGA+AGG + chr4_3:61640179-61640198 None:intergenic 40.0%
ACTAAAGAGACGTCAAAGGA+TGG - chr4_3:61640209-61640228 Msa0653580:intron 40.0%
CTAAAGAGACGTCAAAGGAT+GGG - chr4_3:61640210-61640229 Msa0653580:intron 40.0%
CACATCAAACCCAGAAAAAC+TGG - chr4_3:61640252-61640271 Msa0653580:intron 40.0%
ATGTCTTCAGAAGACATTGC+TGG + chr4_3:61640023-61640042 None:intergenic 40.0%
! AGCAATGTCTTCTGAAGACA+TGG - chr4_3:61640022-61640041 Msa0653580:CDS 40.0%
GAGACTGTATATGAAGGACA+TGG - chr4_3:61640383-61640402 Msa0653580:intron 40.0%
ACTGTATATGAAGGACATGG+AGG - chr4_3:61640386-61640405 Msa0653580:intron 40.0%
CTGTATATGAAGGACATGGA+GGG - chr4_3:61640387-61640406 Msa0653580:intron 40.0%
AAAGGAGAGGAAAGAGAAAG+AGG - chr4_3:61640420-61640439 Msa0653580:intron 40.0%
TGGTAGAACTTTCTTTCAGC+CGG + chr4_3:61640511-61640530 None:intergenic 40.0%
CAAATCTTCTGGTGTAACTG+AGG - chr4_3:61640550-61640569 Msa0653580:intron 40.0%
GGAGAACACGAACTTGAAAA+AGG - chr4_3:61640571-61640590 Msa0653580:intron 40.0%
! CAGGATCTTTTACACATACC+TGG + chr4_3:61640679-61640698 None:intergenic 40.0%
ATCAACTAAAGGGAGTGAAC+AGG + chr4_3:61640698-61640717 None:intergenic 40.0%
ATTGCTTAACATGTGCCCTT+AGG + chr4_3:61641064-61641083 None:intergenic 40.0%
! GTAGAGATTTGCTCAAGGAA+TGG - chr4_3:61641522-61641541 Msa0653580:intron 40.0%
! TTTGATAGCAGAAGCGACAA+AGG - chr4_3:61641575-61641594 Msa0653580:intron 40.0%
! CTTATATTGACGGGTGTTCT+TGG + chr4_3:61641734-61641753 None:intergenic 40.0%
AAGAAAAACTGACGGAGAAC+AGG - chr4_3:61641782-61641801 Msa0653580:five_prime_UTR 40.0%
ACACTTGGGACTTTCAAAGA+AGG + chr4_3:61641850-61641869 None:intergenic 40.0%
! TAATCTTCTGGTTACAAGGG+CGG + chr4_3:61641873-61641892 None:intergenic 40.0%
TCTTTACTACCACCAGTACT+AGG + chr4_3:61641958-61641977 None:intergenic 40.0%
TGTAAGGATTTCACCGAAGA+CGG + chr4_3:61641988-61642007 None:intergenic 40.0%
GACAGCTTTCTTGATGTGTA+AGG + chr4_3:61642004-61642023 None:intergenic 40.0%
TTCATAAGATTCGGAGTTGC+AGG + chr4_3:61642048-61642067 None:intergenic 40.0%
TGCAACTCCGAATCTTATGA+AGG - chr4_3:61642047-61642066 Msa0653580:five_prime_UTR 40.0%
!! ACTGGTGGTTTTACATCTGT+CGG - chr4_3:61642162-61642181 Msa0653580:five_prime_UTR 40.0%
TGATTGAGAGGGACAGGAAA+AGG + chr4_3:61637245-61637264 None:intergenic 45.0%
!!! GTGGTTTTGTCAATTCTGGG+TGG + chr4_3:61637325-61637344 None:intergenic 45.0%
TTAGGGTTAATCGGAGAAGG+TGG - chr4_3:61637373-61637392 Msa0653580:CDS 45.0%
TTCTTGGTGGAGCTGTTATC+CGG - chr4_3:61637571-61637590 Msa0653580:CDS 45.0%
CCAAGAGCAAAGGACCAAAA+TGG + chr4_3:61637879-61637898 None:intergenic 45.0%
!! CCATTTTGGTCCTTTGCTCT+TGG - chr4_3:61637876-61637895 Msa0653580:intron 45.0%
CTTTAGACCCACATTCTGAC+TGG - chr4_3:61638196-61638215 Msa0653580:intron 45.0%
TTCGGTTCCAGTCAGAATGT+GGG + chr4_3:61638206-61638225 None:intergenic 45.0%
GAATTGCAACAGCGCTATTC+AGG - chr4_3:61639243-61639262 Msa0653580:CDS 45.0%
AGTGTCATGCTGTCTTTCGA+GGG + chr4_3:61639363-61639382 None:intergenic 45.0%
AAGTGTCATGCTGTCTTTCG+AGG + chr4_3:61639364-61639383 None:intergenic 45.0%
CTCATTCTTGTCAGCCTTGA+GGG + chr4_3:61639829-61639848 None:intergenic 45.0%
TCTCATTCTTGTCAGCCTTG+AGG + chr4_3:61639830-61639849 None:intergenic 45.0%
! AAACTGGTCTCATGAATGCC+AGG - chr4_3:61639995-61640014 Msa0653580:intron 45.0%
TCAATAGACCCTGAAACACC+AGG + chr4_3:61640056-61640075 None:intergenic 45.0%
!! TCAAAGGATGGGTTATCTGC+TGG - chr4_3:61640221-61640240 Msa0653580:intron 45.0%
CAGAAGACATTGCTGGAACT+TGG + chr4_3:61640289-61640308 None:intergenic 45.0%
AGATTACGCCTGGTGTTTCA+GGG - chr4_3:61640318-61640337 Msa0653580:intron 45.0%
GAGAGGAAAGAGAAAGAGGA+AGG - chr4_3:61640424-61640443 Msa0653580:intron 45.0%
GGTAGAACTTTCTTTCAGCC+GGG + chr4_3:61640510-61640529 None:intergenic 45.0%
GAAAGTTCTACCAGCAACTG+TGG - chr4_3:61640518-61640537 Msa0653580:intron 45.0%
GGTGAGGTTGTCAAATCTTC+TGG - chr4_3:61640539-61640558 Msa0653580:intron 45.0%
GGATGGAACGAAAGATCTGA+TGG - chr4_3:61640592-61640611 Msa0653580:intron 45.0%
GCAGTTAATCCAGAGACACA+TGG - chr4_3:61641603-61641622 Msa0653580:intron 45.0%
TGTCAAAGTCCATGTGTCTC+TGG + chr4_3:61641615-61641634 None:intergenic 45.0%
!! GTAGAACAGCAAAGCATTGG+TGG + chr4_3:61641710-61641729 None:intergenic 45.0%
GGAGTAGAACAGCAAAGCAT+TGG + chr4_3:61641713-61641732 None:intergenic 45.0%
AAAAACTGACGGAGAACAGG+AGG - chr4_3:61641785-61641804 Msa0653580:five_prime_UTR 45.0%
AATGTTGCAAAGGTAGCCGA+TGG - chr4_3:61641892-61641911 Msa0653580:five_prime_UTR 45.0%
AAAGCCAAGAAGCCTAGTAC+TGG - chr4_3:61641943-61641962 Msa0653580:five_prime_UTR 45.0%
!!! TGTTTTTTTTTTTTTTTTTT+TGG + chr4_3:61637097-61637116 None:intergenic 5.0%
!! AAAAAAAAAAAAAAAAACAT+AGG - chr4_3:61637098-61637117 Msa0653580:three_prime_UTR 5.0%
!! ATAATAAATAAATAAAATAG+TGG + chr4_3:61637688-61637707 None:intergenic 5.0%
AGCGTACACGTGTACGAAGA+TGG - chr4_3:61637506-61637525 Msa0653580:CDS 50.0%
GCGTACACGTGTACGAAGAT+GGG - chr4_3:61637507-61637526 Msa0653580:CDS 50.0%
AGCGGAAGTGATTGTGACGT+GGG - chr4_3:61637530-61637549 Msa0653580:CDS 50.0%
ACATGGGAGGAGCTTCTTCT+TGG - chr4_3:61637555-61637574 Msa0653580:CDS 50.0%
AAGGAGAAGGAGTTCTCCCT+CGG + chr4_3:61637635-61637654 None:intergenic 50.0%
! GGTGTAATAGCGGAAGGAGA+AGG + chr4_3:61637648-61637667 None:intergenic 50.0%
TGGTCCTTTGCTCTTGGGTT+TGG - chr4_3:61637882-61637901 Msa0653580:intron 50.0%
CTTCGGTTCCAGTCAGAATG+TGG + chr4_3:61638207-61638226 None:intergenic 50.0%
GGTTATGGGTAGCATTCACG+TGG - chr4_3:61638377-61638396 Msa0653580:intron 50.0%
AATATGGCACTGCTAGGGCT+TGG - chr4_3:61639454-61639473 Msa0653580:CDS 50.0%
AGCAGAGCTTAAGCGAGCTT+TGG - chr4_3:61639503-61639522 Msa0653580:intron 50.0%
!! TCAAAGGATGGGCTATCTGC+TGG - chr4_3:61639948-61639967 Msa0653580:intron 50.0%
!! CAAAGGATGGGCTATCTGCT+GGG - chr4_3:61639949-61639968 Msa0653580:intron 50.0%
CAGAAGACATTGCTGGAACC+TGG + chr4_3:61640016-61640035 None:intergenic 50.0%
AGATCTCGCCTGGTGTTTCA+GGG - chr4_3:61640045-61640064 Msa0653580:intron 50.0%
GAAGACATGGAGATTACGCC+TGG - chr4_3:61640308-61640327 Msa0653580:intron 50.0%
GAGATTACGCCTGGTGTTTC+AGG - chr4_3:61640317-61640336 Msa0653580:intron 50.0%
TTCTACCAGCAACTGTGGTG+AGG - chr4_3:61640523-61640542 Msa0653580:intron 50.0%
! GGCGAGTAGAGATTTGCTCA+AGG - chr4_3:61641517-61641536 Msa0653580:intron 50.0%
ACCACCAGTACTAGGCTTCT+TGG + chr4_3:61641950-61641969 None:intergenic 50.0%
CACATCAAGAAAGCTGTCGG+TGG - chr4_3:61642006-61642025 Msa0653580:five_prime_UTR 50.0%
CACGTGTACGAAGATGGGAG+CGG - chr4_3:61637512-61637531 Msa0653580:CDS 55.0%
GAGCGGAAGTGATTGTGACG+TGG - chr4_3:61637529-61637548 Msa0653580:CDS 55.0%
GCGGAAGTGATTGTGACGTG+GGG - chr4_3:61637531-61637550 Msa0653580:CDS 55.0%
CGGAAGTGATTGTGACGTGG+GGG - chr4_3:61637532-61637551 Msa0653580:CDS 55.0%
TGATTGTGACGTGGGGGACA+TGG - chr4_3:61637538-61637557 Msa0653580:CDS 55.0%
GATTGTGACGTGGGGGACAT+GGG - chr4_3:61637539-61637558 Msa0653580:CDS 55.0%
TGGGAGGAGCTTCTTCTTGG+TGG - chr4_3:61637558-61637577 Msa0653580:CDS 55.0%
TCCTTCCGCTATTACACCCG+AGG - chr4_3:61637650-61637669 Msa0653580:CDS 55.0%
! ACCTCGGGTGTAATAGCGGA+AGG + chr4_3:61637654-61637673 None:intergenic 55.0%
TGGGCCAAACCCAAGAGCAA+AGG + chr4_3:61637889-61637908 None:intergenic 55.0%
! CACTGCTAGGGCTTGGTATG+AGG - chr4_3:61639461-61639480 Msa0653580:intron 55.0%
GAAGACATGGAGATCTCGCC+TGG - chr4_3:61640035-61640054 Msa0653580:CDS 55.0%
GAGATCTCGCCTGGTGTTTC+AGG - chr4_3:61640044-61640063 Msa0653580:intron 55.0%
TCGGTTGACCCTGAAACACC+AGG + chr4_3:61640329-61640348 None:intergenic 55.0%
GACAACCTCACCACAGTTGC+TGG + chr4_3:61640531-61640550 None:intergenic 55.0%
CTGTCGCAAGCATGATAGCC+AGG - chr4_3:61640658-61640677 Msa0653580:intron 55.0%
GGTTACAAGGGCGGACACTT+GGG + chr4_3:61641864-61641883 None:intergenic 55.0%
TGGTTACAAGGGCGGACACT+TGG + chr4_3:61641865-61641884 None:intergenic 55.0%
! TTATTTGAGACCCCCGAGGC+AGG + chr4_3:61641925-61641944 None:intergenic 55.0%
!! GGCTTTATTTGAGACCCCCG+AGG + chr4_3:61641929-61641948 None:intergenic 55.0%
! GCCAAGAAGCCTAGTACTGG+TGG - chr4_3:61641946-61641965 Msa0653580:five_prime_UTR 55.0%
! AACGTTAGCACCGGGTGCGT+AGG - chr4_3:61637438-61637457 Msa0653580:CDS 60.0%
! AGCACCGGGTGCGTAGGATT+AGG - chr4_3:61637444-61637463 Msa0653580:CDS 60.0%
GGCTCCTAATCCTACGCACC+CGG + chr4_3:61637451-61637470 None:intergenic 60.0%
GGTGGAGCTGTTATCCGGCA+CGG - chr4_3:61637576-61637595 Msa0653580:CDS 60.0%
ACCAATCACCAGTGCCGTGC+CGG + chr4_3:61637593-61637612 None:intergenic 60.0%
! TGGTGATTGGTCCGTCGTCG+CGG - chr4_3:61637602-61637621 Msa0653580:CDS 60.0%
TGTGACGTGGGGGACATGGG+AGG - chr4_3:61637542-61637561 Msa0653580:CDS 65.0%
GCTGTTATCCGGCACGGCAC+TGG - chr4_3:61637582-61637601 Msa0653580:CDS 65.0%
!! TCCGGCACGGCACTGGTGAT+TGG - chr4_3:61637589-61637608 Msa0653580:CDS 65.0%
! TGATTGGTCCGTCGTCGCGG+CGG - chr4_3:61637605-61637624 Msa0653580:CDS 65.0%
CGAGGCAGGATCGCTGCCAT+CGG + chr4_3:61641911-61641930 None:intergenic 65.0%
CGATGGCAGCGATCCTGCCT+CGG - chr4_3:61641909-61641928 Msa0653580:five_prime_UTR 65.0%
GATGGCAGCGATCCTGCCTC+GGG - chr4_3:61641910-61641929 Msa0653580:five_prime_UTR 65.0%
ATGGCAGCGATCCTGCCTCG+GGG - chr4_3:61641911-61641930 Msa0653580:five_prime_UTR 65.0%
TGGCAGCGATCCTGCCTCGG+GGG - chr4_3:61641912-61641931 Msa0653580:five_prime_UTR 70.0%
TCGGAGCTCCGCCGCGACGA+CGG + chr4_3:61637616-61637635 None:intergenic 75.0%
TCGTCGCGGCGGAGCTCCGA+GGG - chr4_3:61637616-61637635 Msa0653580:CDS 75.0%
! GTCGTCGCGGCGGAGCTCCG+AGG - chr4_3:61637615-61637634 Msa0653580:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 61637013 61642269 61637013 ID=Msa0653580;Name=Msa0653580
chr4_3 mRNA 61637013 61642269 61637013 ID=Msa0653580-mRNA-1;Parent=Msa0653580;Name=Msa0653580-mRNA-1;_AED=0.05;_eAED=0.05;_QI=512|1|1|1|1|1|5|162|557
chr4_3 exon 61637013 61637696 61637013 ID=Msa0653580-mRNA-1:exon:16948;Parent=Msa0653580-mRNA-1
chr4_3 exon 61638603 61639479 61638603 ID=Msa0653580-mRNA-1:exon:16947;Parent=Msa0653580-mRNA-1
chr4_3 exon 61639735 61639812 61639735 ID=Msa0653580-mRNA-1:exon:16946;Parent=Msa0653580-mRNA-1
chr4_3 exon 61640011 61640060 61640011 ID=Msa0653580-mRNA-1:exon:16945;Parent=Msa0653580-mRNA-1
chr4_3 exon 61641611 61642269 61641611 ID=Msa0653580-mRNA-1:exon:16944;Parent=Msa0653580-mRNA-1
chr4_3 five_prime_UTR 61641758 61642269 61641758 ID=Msa0653580-mRNA-1:five_prime_utr;Parent=Msa0653580-mRNA-1
chr4_3 CDS 61641611 61641757 61641611 ID=Msa0653580-mRNA-1:cds;Parent=Msa0653580-mRNA-1
chr4_3 CDS 61640011 61640060 61640011 ID=Msa0653580-mRNA-1:cds;Parent=Msa0653580-mRNA-1
chr4_3 CDS 61639735 61639812 61639735 ID=Msa0653580-mRNA-1:cds;Parent=Msa0653580-mRNA-1
chr4_3 CDS 61638603 61639479 61638603 ID=Msa0653580-mRNA-1:cds;Parent=Msa0653580-mRNA-1
chr4_3 CDS 61637175 61637696 61637175 ID=Msa0653580-mRNA-1:cds;Parent=Msa0653580-mRNA-1
chr4_3 three_prime_UTR 61637013 61637174 61637013 ID=Msa0653580-mRNA-1:three_prime_utr;Parent=Msa0653580-mRNA-1
Gene Sequence

>Msa0653580

ATGGGAGCGGAAGTGATTGTGACGTGGGGGACATGGGAGGAGCTTCTTCTTGGTGGAGCTGTTATCCGGCACGGCACTGGTGATTGGTCCGTCGTCGCGGCGGAGCTCCGAGGGAGAACTCCTTCTCCTTCCGCTATTACACCCGAGGTCTGTAAAGCCAAATATGAAGAATTGCAACAGCGCTATTCAGGCTGCACGGCTTGGTATGAGGAGCTTAAGAAGAGAAGAGTAGCAGAGCTTAAGCGAGCTTTGGAGAAATCAGAAGATTCAATTGGGTCTCTTGAATCAAAGCTTGAATCCCTCAAGGCTGACAAGAATGAGAAAATAGATGATTGTCTTGTTGACAACAACTCAGTTGGACCAGAATTAGATGTTCCTTCACAGAAATTAGAGAGAGTTGAATCTTCTACTAAAGAGTTGTCAAAGGATGGGCTATCTGCTGGGAGTTTTACACATCAAACCGATACAAACTGGTCTCATGAATGCCAGGTTCCAGCAATGTCTTCTGAAGACATGGAGATCTCGCCTGGTGTTTCAGGGTCTATTGAACATGAGAAAGTTTTGAATATAGATAAGTTGACAGATACAGCTGGGAAAAGAGATGATTGTCATGTTGACAACGACTCAGTTGAACCAGAATCACATGTTCCTTCACAGAAATTGGAGAGAGTTGAATCTTCAACTAAAGAGACGTCAAAGGATGGGTTATCTGCTGGTAGTTTTACACATCAAACCCAGAAAAACTGGTCTCAAGAATGCCAAGTTCCAGCAATGTCTTCTGAAGACATGGAGATTACGCCTGGTGTTTCAGGGTCAACCGAACATGAGAAAGTTTTGAATGTAGATAAGTTGACAGAGACTGTATATGAAGGACATGGAGGGTGTTTTAAAAAAAGGAGAGGAAAGAGAAAGAGGAAGGATTGTGCCAGAAATATTAATGAAGCGAGTGTGAGAGAAAGTGATTTTTCAATTGATGTGTCCCGGCTGAAAGAAAGTTCTACCAGCAACTGTGGTGAGGTTGTCAAATCTTCTGGTGTAACTGAGGAGAACACGAACTTGAAAAAGGATGGAACGAAAGATCTGATGGCGATTTTAGATTCTGTTTTGGAAATTAAAGGTGCTTCTTGCTTCTGTCGCAAGCATGATAGCCAGAAGCGACAAAGGTACAAGCAGTTAATCCAGAGACACATGGACTTTGACACTATAAGGTCAAGAATTAGCAACAAAACAATTGATTCAGTGGTGCAACTTTTCAGAGACATGTTTCTATTGACCACCAATGCTTTGCTGTTCTACTCCAAGAACACCCGTCAATATAAGTCTGCACTACTCATGAGAGATATTGTCAAAGAAAAACTGACGGAGAACAGGAGGAATGTCATACATTCTAATGTCGACATTGTCTGCGCTACTCCTTCTTTGAAAGTCCCAAGTGTCCGCCCTTGTAACCAGAAGATTAATGTTGCAAAGGTAGCCGATGGCAGCGATCCTGCCTCGGGGGTCTCAAATAAAGCCAAGAAGCCTAGTACTGGTGGTAGTAAAGAGAATTCTCCGTCTTCGGTGAAATCCTTACACATCAAGAAAGCTGTCGGTGGATCTAAAAAACATGAACCTGCAACTCCGAATCTTATGAAGGAAATGAAGGAAAAGAAAAGACGGAGAACTAGGTTATGA
Protein sequence

>Msa0653580

MGAEVIVTWGTWEELLLGGAVIRHGTGDWSVVAAELRGRTPSPSAITPEVCKAKYEELQQRYSGCTAWYEELKKRRVAELKRALEKSEDSIGSLESKLESLKADKNEKIDDCLVDNNSVGPELDVPSQKLERVESSTKELSKDGLSAGSFTHQTDTNWSHECQVPAMSSEDMEISPGVSGSIEHEKVLNIDKLTDTAGKRDDCHVDNDSVEPESHVPSQKLERVESSTKETSKDGLSAGSFTHQTQKNWSQECQVPAMSSEDMEITPGVSGSTEHEKVLNVDKLTETVYEGHGGCFKKRRGKRKRKDCARNINEASVRESDFSIDVSRLKESSTSNCGEVVKSSGVTEENTNLKKDGTKDLMAILDSVLEIKGASCFCRKHDSQKRQRYKQLIQRHMDFDTIRSRISNKTIDSVVQLFRDMFLLTTNALLFYSKNTRQYKSALLMRDIVKEKLTENRRNVIHSNVDIVCATPSLKVPSVRPCNQKINVAKVADGSDPASGVSNKAKKPSTGGSKENSPSSVKSLHIKKAVGGSKKHEPATPNLMKEMKEKKRRRTRL*