AlfalfaGEDB | Msa0655170

M. sativa cultivar zhongmu-4 / Msa0655170

KEGG: -
GO: -
PFAM: PF04640.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0655170	XP_013457368.1	97.368	152	3	1	1	151	1	152	4.07e-105	310

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0655170	sp\|Q1G3Q4\|RITF1_ARATH	59.091	132	49	1	20	151	4	130	1.05e-50	165

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0655170	A0A072UNM6	97.368	152	3	1	1	151	1	152	1.94e-105	310

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TFs/TRs:

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Gene ID	Type	Classification
Msa0655170	TF	PLATZ

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0655170	MtrunA17_Chr2g0297251	81.679	131	19	1	21	151	36	161	6.42e-76	226
Msa0655170	MtrunA17_Chr4g0065041	61.364	132	46	1	20	151	6	132	4.65e-55	173
Msa0655170	MtrunA17_Chr4g0052461	98.667	75	1	0	1	75	1	75	5.54e-52	159
Msa0655170	MtrunA17_Chr4g0052451	93.827	81	4	1	72	151	10	90	2.52e-49	153
Msa0655170	MtrunA17_Chr7g0230511	52.632	133	57	1	19	151	6	132	9.13e-48	154
Msa0655170	MtrunA17_Chr4g0040071	45.802	131	65	2	22	151	15	140	3.75e-35	121
Msa0655170	MtrunA17_Chr8g0366581	43.478	138	72	2	15	151	26	158	6.28e-34	119
Msa0655170	MtrunA17_Chr5g0411151	44.030	134	69	2	19	151	32	160	1.51e-33	118
Msa0655170	MtrunA17_Chr5g0395181	43.511	131	68	2	22	151	21	146	1.18e-32	115
Msa0655170	MtrunA17_Chr7g0265291	43.284	134	67	3	22	151	7	135	1.13e-29	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0655170	AT1G31040.1	74.046	131	28	1	21	151	18	142	3.77e-70	211
Msa0655170	AT3G60670.1	58.824	136	51	1	16	151	1	131	5.32e-54	171
Msa0655170	AT2G12646.1	59.091	132	49	1	20	151	4	130	1.07e-51	165
Msa0655170	AT2G12646.2	59.091	132	49	1	20	151	4	130	1.07e-51	165
Msa0655170	AT2G12646.3	58.779	131	49	1	21	151	2	127	5.34e-51	163
Msa0655170	AT2G01818.1	46.429	140	70	2	17	151	6	145	8.75e-37	126
Msa0655170	AT1G32700.1	44.275	131	67	2	22	151	12	137	1.62e-31	112
Msa0655170	AT1G21000.2	43.511	131	68	2	22	151	13	138	1.75e-31	113
Msa0655170	AT1G21000.1	43.511	131	68	2	22	151	16	141	2.10e-31	113
Msa0655170	AT4G17900.1	44.444	135	68	3	19	151	31	160	2.36e-31	112

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Find 49 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGTATGTTTACCATGACG+TGG	0.686416	4_3:-63591435	Msa0655170:CDS
AAGTGAATCAGAAACCTGCA+TGG	0.669083	4_3:-63596535	Msa0655170:CDS
AAGTGATATTCTTAAATGAG+AGG	0.602594	4_3:-63591174	Msa0655170:CDS
AAGTTAGTAGTACCTGAAGG+AGG	0.592377	4_3:+63596372	None:intergenic
AATGGGTGAGACATTCTTTG+GGG	0.548115	4_3:-63596501	Msa0655170:CDS
ACCTGAAGGAGGGGATGAGA+GGG	0.482275	4_3:+63596383	None:intergenic
ACTCTTGCTGCACTTGTGAC+AGG	0.455565	4_3:-63591105	Msa0655170:CDS
AGAAACCTGCATGGTTAGAG+AGG	0.605580	4_3:-63596526	Msa0655170:CDS
AGGGAGACAGTGAGGGCAGA+TGG	0.494496	4_3:+63596412	None:intergenic
AGGGGATGAGAGGGGTGAGA+AGG	0.396086	4_3:+63596392	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAAAAGAAACATCCAA+AGG	+	chr4_3:63591402-63591421	None:intergenic	30.0%
TTTGCCAAATTGTCTATGAT+TGG	-	chr4_3:63591598-63591617	Msa0655170:intron	30.0%
TTGCTATCCTTTACAAAATC+TGG	+	chr4_3:63591706-63591725	None:intergenic	30.0%
TATTATGGAAGCTCCTAATA+TGG	-	chr4_3:63593823-63593842	Msa0655170:intron	30.0%
TCAATGGTCCCTTAAAATTA+AGG	+	chr4_3:63593850-63593869	None:intergenic	30.0%
AACTTAAGCTCAAAATCCAA+TGG	+	chr4_3:63593924-63593943	None:intergenic	30.0%
AGTTATTAACATTCTGCTTC+TGG	-	chr4_3:63593940-63593959	Msa0655170:intron	30.0%
TAACACAAACAAGAGAAAAG+GGG	-	chr4_3:63594385-63594404	Msa0655170:intron	30.0%
AAAGTGGATGTAACCATAAA+TGG	-	chr4_3:63594557-63594576	Msa0655170:intron	30.0%
AAATTAATAAGGTCCACCAA+TGG	-	chr4_3:63594676-63594695	Msa0655170:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	63591063	63596606	63591063	ID=Msa0655170;Name=Msa0655170
chr4_3	mRNA	63591063	63596606	63591063	ID=Msa0655170-mRNA-1;Parent=Msa0655170;Name=Msa0655170-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0\|0\|1\|1\|0.66\|3\|0\|151
chr4_3	exon	63596385	63596606	63596385	ID=Msa0655170-mRNA-1:exon:17917;Parent=Msa0655170-mRNA-1
chr4_3	exon	63591388	63591462	63591388	ID=Msa0655170-mRNA-1:exon:17916;Parent=Msa0655170-mRNA-1
chr4_3	exon	63591063	63591218	63591063	ID=Msa0655170-mRNA-1:exon:17915;Parent=Msa0655170-mRNA-1
chr4_3	CDS	63596385	63596606	63596385	ID=Msa0655170-mRNA-1:cds;Parent=Msa0655170-mRNA-1
chr4_3	CDS	63591388	63591462	63591388	ID=Msa0655170-mRNA-1:cds;Parent=Msa0655170-mRNA-1
chr4_3	CDS	63591063	63591218	63591063	ID=Msa0655170-mRNA-1:cds;Parent=Msa0655170-mRNA-1

Gene Sequence

>Msa0655170

ATGAGAGGAAGTGGAAGTGACCCATCATCAGAAGCAAAGGGAGACATGAAAGTGAATCAGAAACCTGCATGGTTAGAGAGGTTAATGGGTGAGACATTCTTTGGGGGTTGTGGGGTCCACAAAAACCAAAGGAAGAACGAAAAGAACATCCTTTGTTTGCACTGTTGTCTCACCATCTGCCCTCACTGTCTCCCTTCTCACCCCTCTCATCCCCTCCTTCAGGTGAGAAGGTATGTTTACCATGACGTGGTTCAATTGGGTGATCTTGAAAAGCTCATCGATTGCTCCTATATTCAGCCATATACGATTAACGGTGCGAAAGTGATATTCTTAAATGAGAGGGTGCAGTCAAGGTCATGCAAAGGTACTACTACTGCTGCCAATGCCAACTCTTGCTGCACTTGTGACAGGATTCTTCAGGATCCCTTCCATTTCTGTTCTCTCTCATGCAAG

Protein sequence

>Msa0655170

MRGSGSDPSSEAKGDMKVNQKPAWLERLMGETFFGGCGVHKNQRKNEKNILCLHCCLTICPHCLPSHPSHPLLQVRRYVYHDVVQLGDLEKLIDCSYIQPYTINGAKVIFLNERVQSRSCKGTTTAANANSCCTCDRILQDPFHFCSLSCK