AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0655170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655170 MtrunA17_Chr2g0297251 81.679 131 19 1 21 151 36 161 6.42e-76 226
Msa0655170 MtrunA17_Chr4g0065041 61.364 132 46 1 20 151 6 132 4.65e-55 173
Msa0655170 MtrunA17_Chr4g0052461 98.667 75 1 0 1 75 1 75 5.54e-52 159
Msa0655170 MtrunA17_Chr4g0052451 93.827 81 4 1 72 151 10 90 2.52e-49 153
Msa0655170 MtrunA17_Chr7g0230511 52.632 133 57 1 19 151 6 132 9.13e-48 154
Msa0655170 MtrunA17_Chr4g0040071 45.802 131 65 2 22 151 15 140 3.75e-35 121
Msa0655170 MtrunA17_Chr8g0366581 43.478 138 72 2 15 151 26 158 6.28e-34 119
Msa0655170 MtrunA17_Chr5g0411151 44.030 134 69 2 19 151 32 160 1.51e-33 118
Msa0655170 MtrunA17_Chr5g0395181 43.511 131 68 2 22 151 21 146 1.18e-32 115
Msa0655170 MtrunA17_Chr7g0265291 43.284 134 67 3 22 151 7 135 1.13e-29 107
Msa0655170 MtrunA17_Chr1g0179781 40.909 132 71 3 22 151 7 133 2.46e-28 103
Msa0655170 MtrunA17_Chr2g0320521 41.045 134 73 4 24 151 8 141 1.52e-24 94.7
Msa0655170 MtrunA17_Chr2g0320561 38.806 134 76 4 24 151 6 139 7.38e-23 90.5
Msa0655170 MtrunA17_Chr2g0308401 39.552 134 75 4 24 151 6 139 1.27e-22 87.8
Msa0655170 MtrunA17_Chr2g0320551 36.567 134 79 4 24 151 6 139 5.66e-22 86.3
Msa0655170 MtrunA17_Chr4g0020811 38.806 134 76 4 24 151 8 141 7.39e-22 85.9
Msa0655170 MtrunA17_Chr8g0392151 32.639 144 80 4 24 151 15 157 1.58e-18 79.0
Msa0655170 MtrunA17_Chr5g0434331 31.081 148 86 5 12 151 29 168 2.05e-15 70.1
Msa0655170 MtrunA17_Chr1g0161601 44.444 81 43 2 19 99 45 123 2.44e-15 68.6
Msa0655170 MtrunA17_Chr8g0386511 38.144 97 49 4 60 151 4 94 9.61e-13 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0655170 AT1G31040.1 74.046 131 28 1 21 151 18 142 3.77e-70 211
Msa0655170 AT3G60670.1 58.824 136 51 1 16 151 1 131 5.32e-54 171
Msa0655170 AT2G12646.1 59.091 132 49 1 20 151 4 130 1.07e-51 165
Msa0655170 AT2G12646.2 59.091 132 49 1 20 151 4 130 1.07e-51 165
Msa0655170 AT2G12646.3 58.779 131 49 1 21 151 2 127 5.34e-51 163
Msa0655170 AT2G01818.1 46.429 140 70 2 17 151 6 145 8.75e-37 126
Msa0655170 AT1G32700.1 44.275 131 67 2 22 151 12 137 1.62e-31 112
Msa0655170 AT1G21000.2 43.511 131 68 2 22 151 13 138 1.75e-31 113
Msa0655170 AT1G21000.1 43.511 131 68 2 22 151 16 141 2.10e-31 113
Msa0655170 AT4G17900.1 44.444 135 68 3 19 151 31 160 2.36e-31 112
Msa0655170 AT4G17900.2 44.444 135 68 3 19 151 17 146 2.75e-31 112
Msa0655170 AT2G27930.3 43.478 138 72 3 20 151 2 139 5.45e-31 109
Msa0655170 AT2G27930.2 43.478 138 72 3 20 151 2 139 5.45e-31 109
Msa0655170 AT2G27930.1 43.478 138 72 3 20 151 2 139 6.84e-31 110
Msa0655170 AT2G27930.4 43.478 138 72 3 20 151 2 139 6.84e-31 110
Msa0655170 AT1G76590.1 43.511 131 68 2 22 151 18 143 2.37e-30 110
Msa0655170 AT1G43000.2 41.221 131 71 2 22 151 16 141 4.57e-28 103
Msa0655170 AT1G43000.1 41.221 131 71 2 22 151 9 134 5.09e-28 103
Msa0655170 AT5G46710.2 40.000 135 74 3 19 151 25 154 7.76e-27 99.0
Msa0655170 AT5G46710.3 40.741 135 73 3 19 151 9 138 1.52e-26 99.8
Msa0655170 AT5G46710.1 40.741 135 73 3 19 151 25 154 1.57e-26 100
Msa0655170 AT1G32700.2 44.660 103 51 2 50 151 1 98 1.34e-22 88.6
Msa0655170 AT2G01818.2 50.000 76 37 1 77 151 6 81 2.59e-19 79.3
Msa0655170 AT2G27930.5 46.429 84 41 1 72 151 59 142 9.71e-18 76.3
Msa0655170 AT2G27930.6 46.429 84 41 1 72 151 59 142 9.71e-18 76.3

Find 49 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCCTTTGCTTCTGATGA+TGG 0.298330 4_3:+63596563 None:intergenic
TTCGCACCGTTAATCGTATA+TGG 0.314823 4_3:+63591196 None:intergenic
TTAATGGGTGAGACATTCTT+TGG 0.323122 4_3:-63596503 Msa0655170:CDS
CCCCTCTCATCCCCTCCTTC+AGG 0.332528 4_3:-63596384 Msa0655170:intron
GGGGATGAGAGGGGTGAGAA+GGG 0.369978 4_3:+63596393 None:intergenic
CACTTGTGACAGGATTCTTC+AGG 0.373696 4_3:-63591095 Msa0655170:CDS
AGGGGATGAGAGGGGTGAGA+AGG 0.396086 4_3:+63596392 None:intergenic
TATTTGTTTGACCTGAATAT+AGG 0.411844 4_3:+63591376 None:intergenic
CATCGATTGCTCCTATATTC+AGG 0.420826 4_3:-63591387 Msa0655170:intron
TAATGGGTGAGACATTCTTT+GGG 0.422434 4_3:-63596502 Msa0655170:CDS
CTCCCTTTGCTTCTGATGAT+GGG 0.428222 4_3:+63596564 None:intergenic
TGCATGGTTAGAGAGGTTAA+TGG 0.448349 4_3:-63596519 Msa0655170:CDS
TTACCATGACGTGGTTCAAT+TGG 0.448712 4_3:-63591426 Msa0655170:CDS
ACTCTTGCTGCACTTGTGAC+AGG 0.455565 4_3:-63591105 Msa0655170:CDS
TGCATGAGAGAGAACAGAAA+TGG 0.467641 4_3:+63591065 None:intergenic
GTGTGAGACATGAGAGGAAG+TGG 0.470262 4_3:-63596593 None:intergenic
GCATGGTTAGAGAGGTTAAT+GGG 0.474331 4_3:-63596518 Msa0655170:CDS
ACCTGAAGGAGGGGATGAGA+GGG 0.482275 4_3:+63596383 None:intergenic
AGGGAGACAGTGAGGGCAGA+TGG 0.494496 4_3:+63596412 None:intergenic
ATGCAGCCATATACGATTAA+CGG 0.494856 4_3:-63591202 Msa0655170:intron
TACCATGACGTGGTTCAATT+GGG 0.505968 4_3:-63591425 Msa0655170:CDS
TACCTGAAGGAGGGGATGAG+AGG 0.543545 4_3:+63596382 None:intergenic
AATGGGTGAGACATTCTTTG+GGG 0.548115 4_3:-63596501 Msa0655170:CDS
GTCACAAGTGCAGCAAGAGT+TGG 0.556394 4_3:+63591108 None:intergenic
GGGTGAGAAGGGAGACAGTG+AGG 0.556701 4_3:+63596404 None:intergenic
GGTGAGAAGGGAGACAGTGA+GGG 0.559740 4_3:+63596405 None:intergenic
TGACCCATCATCAGAAGCAA+AGG 0.564164 4_3:-63596567 Msa0655170:CDS
TAAATGAGAGGGTGCAGTCA+AGG 0.569301 4_3:-63591162 Msa0655170:CDS
GACCCATCATCAGAAGCAAA+GGG 0.572363 4_3:-63596566 Msa0655170:CDS
TTTCTGTTCTCTCTCATGCA+AGG 0.584910 4_3:-63591062 None:intergenic
TGAGAGAGAACAGAAATGGA+AGG 0.587138 4_3:+63591069 None:intergenic
GCCATATTGTGCAGGTGAGA+AGG 0.589373 4_3:-63591454 Msa0655170:intron
ATTAACCTCTCTAACCATGC+AGG 0.589991 4_3:+63596521 None:intergenic
GTTAGTAGTACCTGAAGGAG+GGG 0.591333 4_3:+63596374 None:intergenic
AAGTTAGTAGTACCTGAAGG+AGG 0.592377 4_3:+63596372 None:intergenic
AGTGATATTCTTAAATGAGA+GGG 0.594917 4_3:-63591173 Msa0655170:CDS
AAGTGATATTCTTAAATGAG+AGG 0.602594 4_3:-63591174 Msa0655170:CDS
AGTTAGTAGTACCTGAAGGA+GGG 0.604029 4_3:+63596373 None:intergenic
AGAAACCTGCATGGTTAGAG+AGG 0.605580 4_3:-63596526 Msa0655170:CDS
ATGGGTGAGACATTCTTTGG+GGG 0.616331 4_3:-63596500 Msa0655170:CDS
AGTGCAGCAAGAGTTGGCAT+TGG 0.622670 4_3:+63591114 None:intergenic
CACCCAATTGAACCACGTCA+TGG 0.626928 4_3:+63591423 None:intergenic
GAGAGAGAACAGAAATGGAA+GGG 0.627838 4_3:+63591070 None:intergenic
CCTGAAGGAGGGGATGAGAG+GGG 0.636429 4_3:+63596384 None:intergenic
GTGCAGTCAAGGTCATGCAA+AGG 0.664808 4_3:-63591151 Msa0655170:CDS
AAGTGAATCAGAAACCTGCA+TGG 0.669083 4_3:-63596535 Msa0655170:CDS
TGAGACAACAGTGCAAACAA+AGG 0.686217 4_3:+63596435 None:intergenic
AAGGTATGTTTACCATGACG+TGG 0.686416 4_3:-63591435 Msa0655170:CDS
GTTGTGGTGTGAGACATGAG+AGG 0.704900 4_3:-63596599 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATTATTATTA+TGG - chr4_3:63591960-63591979 Msa0655170:intron 0.0%
!! ATAATAATAATAATAATAAT+AGG + chr4_3:63591958-63591977 None:intergenic 0.0%
!! ATTATTATTATTATTATTAT+AGG - chr4_3:63591958-63591977 Msa0655170:intron 0.0%
!!! TTAATTTAATTTTTATTTTT+TGG - chr4_3:63594834-63594853 Msa0655170:intron 0.0%
!!! TTTATTTATTATTTTTTTTT+CGG - chr4_3:63595339-63595358 Msa0655170:intron 0.0%
!!! TTATTTTTGATAAATTTGAT+AGG - chr4_3:63591567-63591586 Msa0655170:intron 10.0%
!!! AATTAAGTTTAATTTTGTAA+AGG - chr4_3:63591724-63591743 Msa0655170:intron 10.0%
!!! GAATTTTTTATTTAAACATT+TGG - chr4_3:63591760-63591779 Msa0655170:intron 10.0%
!! TGTAATAAAGAATAATTTAA+TGG - chr4_3:63595419-63595438 Msa0655170:intron 10.0%
!! TAAATATAGTTAATCTTATA+CGG + chr4_3:63595677-63595696 None:intergenic 10.0%
!!! CTTAACAAAAATATTTATTT+TGG + chr4_3:63595730-63595749 None:intergenic 10.0%
!!! CAAAATAAATATTTTTGTTA+AGG - chr4_3:63595728-63595747 Msa0655170:intron 10.0%
!!! GATTTTATTTTATTTTCTTA+AGG + chr4_3:63595848-63595867 None:intergenic 10.0%
!! AAATATTATTAAATTTGGTT+CGG + chr4_3:63595885-63595904 None:intergenic 10.0%
!! CAATGAAATATTATTAAATT+TGG + chr4_3:63595890-63595909 None:intergenic 10.0%
!! CAAATTTAATAATATTTCAT+TGG - chr4_3:63595888-63595907 Msa0655170:intron 10.0%
!! TAATTGAAGAACATATATAT+AGG + chr4_3:63591469-63591488 None:intergenic 15.0%
!!! TAATTTCTACTTTTATGTTT+TGG - chr4_3:63595025-63595044 Msa0655170:intron 15.0%
!! TAAAAATAAAAACTAGAGTT+GGG + chr4_3:63595181-63595200 None:intergenic 15.0%
!! ATTAACAAACTCTATTTAAT+GGG + chr4_3:63595256-63595275 None:intergenic 15.0%
!!! AATTTTGTAAAACAACTTAT+AGG - chr4_3:63595648-63595667 Msa0655170:intron 15.0%
!!! TTATTTTATTTTCTTAAGGA+AGG + chr4_3:63595844-63595863 None:intergenic 15.0%
!!! ATATACTGATATTGATTTTT+GGG + chr4_3:63596328-63596347 None:intergenic 15.0%
!!! TATATACTGATATTGATTTT+TGG + chr4_3:63596329-63596348 None:intergenic 15.0%
!!! TTATTAGAATTAAGCAATTT+TGG - chr4_3:63596374-63596393 Msa0655170:intron 15.0%
!!! TTTTGGTTATTAATTAACAT+AGG - chr4_3:63596391-63596410 Msa0655170:CDS 15.0%
!! TATTTGCAAATTAATTCATG+TGG - chr4_3:63591340-63591359 Msa0655170:intron 20.0%
!! TGAAGTAAGTATTTAGAAAT+AGG + chr4_3:63591656-63591675 None:intergenic 20.0%
!!! TTTGTTTGAATTTTATACGA+AGG + chr4_3:63591846-63591865 None:intergenic 20.0%
!! TTAAAATTAAGGTCCATATT+AGG + chr4_3:63594703-63594722 None:intergenic 20.0%
!!! TAATATGGACCTTAATTTTA+AGG - chr4_3:63593838-63593857 Msa0655170:intron 20.0%
!!! AATATGGACCTTAATTTTAA+GGG - chr4_3:63593839-63593858 Msa0655170:intron 20.0%
!! ATGGTTCATAATAAAAATTG+TGG + chr4_3:63593905-63593924 None:intergenic 20.0%
!!! CAATTTTTATTATGAACCAT+TGG - chr4_3:63593905-63593924 Msa0655170:intron 20.0%
!!! ATTGAAATTTTGAAGCTTTT+GGG + chr4_3:63594285-63594304 None:intergenic 20.0%
!! AATATTGTTTGAAAACGATA+GGG - chr4_3:63594451-63594470 Msa0655170:intron 20.0%
!!! AATATGGACCTTAATTTTAA+AGG + chr4_3:63593839-63593858 None:intergenic 20.0%
!! TTAAAATTAAGGTCCATATT+AGG - chr4_3:63594703-63594722 Msa0655170:intron 20.0%
!! TAAAATTAAGGTCCATATTA+GGG - chr4_3:63594704-63594723 Msa0655170:intron 20.0%
!! CTAAAAATAAAAACTAGAGT+TGG + chr4_3:63595182-63595201 None:intergenic 20.0%
!!! CAACTCTAGTTTTTATTTTT+AGG - chr4_3:63595180-63595199 Msa0655170:intron 20.0%
!! AAGTTTGGTTAATGTTATAT+TGG + chr4_3:63595225-63595244 None:intergenic 20.0%
!! CATTAACAAACTCTATTTAA+TGG + chr4_3:63595257-63595276 None:intergenic 20.0%
!! CAAAAAATAAATAGAGTGAT+AGG + chr4_3:63595543-63595562 None:intergenic 20.0%
!!! TCACTCTATTTATTTTTTGA+AGG - chr4_3:63595544-63595563 Msa0655170:intron 20.0%
!! TAGAAATAGAATACTATGTT+AGG - chr4_3:63596019-63596038 Msa0655170:intron 20.0%
!! CAAAATTATAGTACAAATGA+GGG + chr4_3:63596106-63596125 None:intergenic 20.0%
!! ACAAAATTATAGTACAAATG+AGG + chr4_3:63596107-63596126 None:intergenic 20.0%
!!! AAATAATATATGAGTTGGTT+TGG - chr4_3:63596417-63596436 Msa0655170:CDS 20.0%
! TACTAACTTAACTTCTGTTA+TGG - chr4_3:63591289-63591308 Msa0655170:intron 25.0%
!!! TTGAAATTTTGGAGTTGATA+AGG + chr4_3:63591316-63591335 None:intergenic 25.0%
! TATCAACTCCAAAATTTCAA+AGG - chr4_3:63591316-63591335 Msa0655170:intron 25.0%
! ATCAACTCCAAAATTTCAAA+GGG - chr4_3:63591317-63591336 Msa0655170:intron 25.0%
!!! TAGCACTTTTTTTTTTCCTT+TGG - chr4_3:63591383-63591402 Msa0655170:intron 25.0%
! AGAATAAAGTAATGATCCAA+AGG + chr4_3:63591420-63591439 None:intergenic 25.0%
! AAAACCAATCATAGACAATT+TGG + chr4_3:63591605-63591624 None:intergenic 25.0%
! ACAGAAAAATAAAGGAAATC+TGG + chr4_3:63591874-63591893 None:intergenic 25.0%
!!! AGATTTCCTTTATTTTTCTG+TGG - chr4_3:63591873-63591892 Msa0655170:intron 25.0%
!!! GATTTCCTTTATTTTTCTGT+GGG - chr4_3:63591874-63591893 Msa0655170:intron 25.0%
! TCATAATAAAAATTGTGGAC+AGG + chr4_3:63593900-63593919 None:intergenic 25.0%
! CACACATTAATTATACAGAA+AGG + chr4_3:63594123-63594142 None:intergenic 25.0%
! TATAATCAGTGACACAAAAA+TGG + chr4_3:63594154-63594173 None:intergenic 25.0%
!!! GATTGAAATTTTGAAGCTTT+TGG + chr4_3:63594286-63594305 None:intergenic 25.0%
! AAAGAAGAAGAAAATTGATC+TGG + chr4_3:63594333-63594352 None:intergenic 25.0%
! TAGTGTCTTCAAACAAATAA+TGG + chr4_3:63594359-63594378 None:intergenic 25.0%
! AATAACACAAACAAGAGAAA+AGG - chr4_3:63594383-63594402 Msa0655170:intron 25.0%
! ATAACACAAACAAGAGAAAA+GGG - chr4_3:63594384-63594403 Msa0655170:intron 25.0%
! CAATATTGTTTGAAAACGAT+AGG - chr4_3:63594450-63594469 Msa0655170:intron 25.0%
! ATATTGTTTGAAAACGATAG+GGG - chr4_3:63594452-63594471 Msa0655170:intron 25.0%
!!! ATTGGTTATTTTGGGTTTAA+AGG + chr4_3:63594619-63594638 None:intergenic 25.0%
! AAACCCAAAATAACCAATAT+AGG - chr4_3:63594621-63594640 Msa0655170:intron 25.0%
!!! CTTCCTATATTGGTTATTTT+GGG + chr4_3:63594627-63594646 None:intergenic 25.0%
!!! TCTTCCTATATTGGTTATTT+TGG + chr4_3:63594628-63594647 None:intergenic 25.0%
! CTATAGCAGGTAAATTAATA+AGG - chr4_3:63594665-63594684 Msa0655170:intron 25.0%
! AAAATTAAGGTCCATATTAG+GGG - chr4_3:63594705-63594724 Msa0655170:intron 25.0%
! GAAATTAATCATACAAGACA+TGG + chr4_3:63595012-63595031 None:intergenic 25.0%
! TGGTTAATGTTATATTGGAT+TGG + chr4_3:63595220-63595239 None:intergenic 25.0%
! TAATGGGATAAATCAAAGTT+TGG + chr4_3:63595240-63595259 None:intergenic 25.0%
! TTTCATTTGGAGATGATTAA+AGG + chr4_3:63595376-63595395 None:intergenic 25.0%
!!! TATTATTAAATTTGGTTCGG+TGG + chr4_3:63595882-63595901 None:intergenic 25.0%
! CAATTATTGTCACACATTAT+TGG + chr4_3:63596156-63596175 None:intergenic 25.0%
! ATAATGTGTGACAATAATTG+AGG - chr4_3:63596156-63596175 Msa0655170:intron 25.0%
! TATTTGTTTGACCTGAATAT+AGG + chr4_3:63596274-63596293 None:intergenic 25.0%
! GGTAGAAATAATATATGAGT+TGG - chr4_3:63596412-63596431 Msa0655170:CDS 25.0%
! AAGTGATATTCTTAAATGAG+AGG - chr4_3:63596473-63596492 Msa0655170:CDS 25.0%
! AGTGATATTCTTAAATGAGA+GGG - chr4_3:63596474-63596493 Msa0655170:CDS 25.0%
!!! GCAAATACCCTTTGAAATTT+TGG + chr4_3:63591327-63591346 None:intergenic 30.0%
AAAGGAAAAGAAACATCCAA+AGG + chr4_3:63591402-63591421 None:intergenic 30.0%
! TTTGGATGTTTCTTTTCCTT+TGG - chr4_3:63591401-63591420 Msa0655170:CDS 30.0%
TTTGCCAAATTGTCTATGAT+TGG - chr4_3:63591598-63591617 Msa0655170:intron 30.0%
!!! CTATGATTGGTTTTATGACA+TGG - chr4_3:63591611-63591630 Msa0655170:intron 30.0%
! ACATGGATTTATGCTTTGTT+TGG - chr4_3:63591628-63591647 Msa0655170:intron 30.0%
! TTCTACTCCAGATTTTGTAA+AGG - chr4_3:63591696-63591715 Msa0655170:intron 30.0%
TTGCTATCCTTTACAAAATC+TGG + chr4_3:63591706-63591725 None:intergenic 30.0%
TATTATGGAAGCTCCTAATA+TGG - chr4_3:63593823-63593842 Msa0655170:intron 30.0%
TCAATGGTCCCTTAAAATTA+AGG + chr4_3:63593850-63593869 None:intergenic 30.0%
!! TAATTTTAAGGGACCATTGA+TGG - chr4_3:63593850-63593869 Msa0655170:intron 30.0%
AACTTAAGCTCAAAATCCAA+TGG + chr4_3:63593924-63593943 None:intergenic 30.0%
AGTTATTAACATTCTGCTTC+TGG - chr4_3:63593940-63593959 Msa0655170:intron 30.0%
! AAAGTCTAAAATCCACTTTG+TGG - chr4_3:63593998-63594017 Msa0655170:intron 30.0%
! AAGTCTAAAATCCACTTTGT+GGG - chr4_3:63593999-63594018 Msa0655170:intron 30.0%
!!! TTTTGAAGCTTTTGGGTAAA+TGG + chr4_3:63594278-63594297 None:intergenic 30.0%
TAACACAAACAAGAGAAAAG+GGG - chr4_3:63594385-63594404 Msa0655170:intron 30.0%
AAAGTGGATGTAACCATAAA+TGG - chr4_3:63594557-63594576 Msa0655170:intron 30.0%
!! CTGTTTTGTTCTTCCTATAT+TGG + chr4_3:63594637-63594656 None:intergenic 30.0%
AAATTAATAAGGTCCACCAA+TGG - chr4_3:63594676-63594695 Msa0655170:intron 30.0%
!! TAATTTTAAAGGACCATTGG+TGG + chr4_3:63594692-63594711 None:intergenic 30.0%
!! CCTTAATTTTAAAGGACCAT+TGG + chr4_3:63594695-63594714 None:intergenic 30.0%
!! CCAATGGTCCTTTAAAATTA+AGG - chr4_3:63594692-63594711 Msa0655170:intron 30.0%
!!! TTGGTTTTCTAGAATTGACA+AGG - chr4_3:63594853-63594872 Msa0655170:intron 30.0%
!!! TGGTTTTCTAGAATTGACAA+GGG - chr4_3:63594854-63594873 Msa0655170:intron 30.0%
CAAACACAATGAGACAAAAT+TGG + chr4_3:63594921-63594940 None:intergenic 30.0%
!!! TTTTCCACTTTTTGTTTTCC+AGG - chr4_3:63594978-63594997 Msa0655170:intron 30.0%
! TTTGGTTTCTTTCCCATTAA+TGG - chr4_3:63595043-63595062 Msa0655170:intron 30.0%
AAAAGGGATCTTCCATTAAT+GGG + chr4_3:63595058-63595077 None:intergenic 30.0%
AAAAAGGGATCTTCCATTAA+TGG + chr4_3:63595059-63595078 None:intergenic 30.0%
GGGGAAATTGGATAAAAAAA+GGG + chr4_3:63595074-63595093 None:intergenic 30.0%
AGGGGAAATTGGATAAAAAA+AGG + chr4_3:63595075-63595094 None:intergenic 30.0%
GAAAGACAGAAGAAGAATTT+GGG + chr4_3:63595132-63595151 None:intergenic 30.0%
AGAAAGACAGAAGAAGAATT+TGG + chr4_3:63595133-63595152 None:intergenic 30.0%
! AAACTTTTATAACCTGGTAC+AGG + chr4_3:63595456-63595475 None:intergenic 30.0%
! TGAGACAAACTTTTATAACC+TGG + chr4_3:63595462-63595481 None:intergenic 30.0%
GTTTGTCTCAAATTAGAAGT+CGG - chr4_3:63595472-63595491 Msa0655170:intron 30.0%
AATGAAATGTGACAGTTTCT+GGG + chr4_3:63595930-63595949 None:intergenic 30.0%
!! ATATATGAGTTGGTTTGGAA+TGG - chr4_3:63596422-63596441 Msa0655170:CDS 30.0%
! TTAATGGGTGAGACATTCTT+TGG - chr4_3:63591144-63591163 Msa0655170:CDS 35.0%
! TAATGGGTGAGACATTCTTT+GGG - chr4_3:63591145-63591164 Msa0655170:CDS 35.0%
! TGTTCTTTTCGTTCTTCCTT+TGG + chr4_3:63591191-63591210 None:intergenic 35.0%
GTTAAGTTAGTAGTACCTGA+AGG + chr4_3:63591281-63591300 None:intergenic 35.0%
CGAATCCCACAGAAAAATAA+AGG + chr4_3:63591882-63591901 None:intergenic 35.0%
AAACTAATGAGGTCCATCAA+TGG + chr4_3:63593866-63593885 None:intergenic 35.0%
TTGTAGCAGGTAAACTAATG+AGG + chr4_3:63593877-63593896 None:intergenic 35.0%
TCACAAGAATGGAAGAAATG+GGG + chr4_3:63594049-63594068 None:intergenic 35.0%
CTCACAAGAATGGAAGAAAT+GGG + chr4_3:63594050-63594069 None:intergenic 35.0%
ACTCACAAGAATGGAAGAAA+TGG + chr4_3:63594051-63594070 None:intergenic 35.0%
GATGAGTCAAACTCATAGAA+GGG + chr4_3:63594090-63594109 None:intergenic 35.0%
TGATGAGTCAAACTCATAGA+AGG + chr4_3:63594091-63594110 None:intergenic 35.0%
GTTAAAACACAAGTGTGATG+TGG + chr4_3:63594250-63594269 None:intergenic 35.0%
! GAAGAAAATTGATCTGGAGT+AGG + chr4_3:63594327-63594346 None:intergenic 35.0%
! AAAAGAACGTGAGAGAGTAT+TGG - chr4_3:63594533-63594552 Msa0655170:intron 35.0%
!! AAAGAACGTGAGAGAGTATT+GGG - chr4_3:63594534-63594553 Msa0655170:intron 35.0%
ATAATAGGAAGCCCCTAATA+TGG + chr4_3:63594719-63594738 None:intergenic 35.0%
AAGCATCAACAGTGATATCT+GGG + chr4_3:63594950-63594969 None:intergenic 35.0%
TAAGCATCAACAGTGATATC+TGG + chr4_3:63594951-63594970 None:intergenic 35.0%
AAGCTTTCGCTTTCAATGAA+AGG + chr4_3:63595106-63595125 None:intergenic 35.0%
! CTGTCTTTCTACTTCAAGTT+TGG - chr4_3:63595143-63595162 Msa0655170:intron 35.0%
AAAACTAGAGTTGGGAAGTA+GGG + chr4_3:63595173-63595192 None:intergenic 35.0%
AAAAACTAGAGTTGGGAAGT+AGG + chr4_3:63595174-63595193 None:intergenic 35.0%
CATTTGGAGATGATTAAAGG+TGG + chr4_3:63595373-63595392 None:intergenic 35.0%
GAATGAAATGTGACAGTTTC+TGG + chr4_3:63595931-63595950 None:intergenic 35.0%
ATGCAGCCATATACGATTAA+CGG - chr4_3:63596445-63596464 Msa0655170:CDS 35.0%
AAGTGAATCAGAAACCTGCA+TGG - chr4_3:63591112-63591131 Msa0655170:CDS 40.0%
ATTAACCTCTCTAACCATGC+AGG + chr4_3:63591129-63591148 None:intergenic 40.0%
TGCATGGTTAGAGAGGTTAA+TGG - chr4_3:63591128-63591147 Msa0655170:CDS 40.0%
GCATGGTTAGAGAGGTTAAT+GGG - chr4_3:63591129-63591148 Msa0655170:CDS 40.0%
AATGGGTGAGACATTCTTTG+GGG - chr4_3:63591146-63591165 Msa0655170:CDS 40.0%
!!! CGTTCTTCCTTTGGTTTTTG+TGG + chr4_3:63591182-63591201 None:intergenic 40.0%
TGAGACAACAGTGCAAACAA+AGG + chr4_3:63591215-63591234 None:intergenic 40.0%
AGTTAGTAGTACCTGAAGGA+GGG + chr4_3:63591277-63591296 None:intergenic 40.0%
AAGTTAGTAGTACCTGAAGG+AGG + chr4_3:63591278-63591297 None:intergenic 40.0%
!! AAATGGGGTGGTGTTTTTGA+AGG + chr4_3:63594034-63594053 None:intergenic 40.0%
TCATAGAAGGGAGAAGAAGA+GGG + chr4_3:63594078-63594097 None:intergenic 40.0%
!! GAAGCTTTTGGGTAAATGGA+AGG + chr4_3:63594274-63594293 None:intergenic 40.0%
TGGATGTAACCATAAATGGC+TGG - chr4_3:63594561-63594580 Msa0655170:intron 40.0%
ACCATAAATGGCTGGAGAAA+TGG - chr4_3:63594569-63594588 Msa0655170:intron 40.0%
TCCATTTCTCCAGCCATTTA+TGG + chr4_3:63594573-63594592 None:intergenic 40.0%
GGAAGAACAAAACAGTTGAC+AGG - chr4_3:63594642-63594661 Msa0655170:intron 40.0%
!! TTCTAGAATTGACAAGGGCT+TGG - chr4_3:63594859-63594878 Msa0655170:intron 40.0%
AATTGGTCACTAGTGTCTAG+TGG + chr4_3:63594904-63594923 None:intergenic 40.0%
!!! TCCACTTTTTGTTTTCCAGG+AGG - chr4_3:63594981-63595000 Msa0655170:intron 40.0%
!!! CCACTTTTTGTTTTCCAGGA+GGG - chr4_3:63594982-63595001 Msa0655170:intron 40.0%
TCAATGAAAGGAACGTTGCA+GGG + chr4_3:63595094-63595113 None:intergenic 40.0%
TTCAATGAAAGGAACGTTGC+AGG + chr4_3:63595095-63595114 None:intergenic 40.0%
TTGGAGATGATTAAAGGTGG+AGG + chr4_3:63595370-63595389 None:intergenic 40.0%
! CTTTTATAACCTGGTACAGG+AGG + chr4_3:63595453-63595472 None:intergenic 40.0%
! AGGAGTGTGAGAGTTAAAGA+GGG + chr4_3:63595824-63595843 None:intergenic 40.0%
! AAGGAGTGTGAGAGTTAAAG+AGG + chr4_3:63595825-63595844 None:intergenic 40.0%
! AAATGAGGGTATGAGTAAGC+AGG + chr4_3:63596092-63596111 None:intergenic 40.0%
AAGGTATGTTTACCATGACG+TGG - chr4_3:63596212-63596231 Msa0655170:intron 40.0%
TTACCATGACGTGGTTCAAT+TGG - chr4_3:63596221-63596240 Msa0655170:intron 40.0%
TACCATGACGTGGTTCAATT+GGG - chr4_3:63596222-63596241 Msa0655170:intron 40.0%
! CATCGATTGCTCCTATATTC+AGG - chr4_3:63596260-63596279 Msa0655170:intron 40.0%
TTCGCACCGTTAATCGTATA+TGG + chr4_3:63596454-63596473 None:intergenic 40.0%
GAGAGAGAACAGAAATGGAA+GGG + chr4_3:63596580-63596599 None:intergenic 40.0%
TGAGAGAGAACAGAAATGGA+AGG + chr4_3:63596581-63596600 None:intergenic 40.0%
TGCATGAGAGAGAACAGAAA+TGG + chr4_3:63596585-63596604 None:intergenic 40.0%
TGACCCATCATCAGAAGCAA+AGG - chr4_3:63591080-63591099 Msa0655170:CDS 45.0%
GACCCATCATCAGAAGCAAA+GGG - chr4_3:63591081-63591100 Msa0655170:CDS 45.0%
CTCCCTTTGCTTCTGATGAT+GGG + chr4_3:63591086-63591105 None:intergenic 45.0%
TCTCCCTTTGCTTCTGATGA+TGG + chr4_3:63591087-63591106 None:intergenic 45.0%
AGAAACCTGCATGGTTAGAG+AGG - chr4_3:63591121-63591140 Msa0655170:CDS 45.0%
ATGGGTGAGACATTCTTTGG+GGG - chr4_3:63591147-63591166 Msa0655170:CDS 45.0%
! AGACATTCTTTGGGGGTTGT+GGG - chr4_3:63591154-63591173 Msa0655170:CDS 45.0%
GTTAGTAGTACCTGAAGGAG+GGG + chr4_3:63591276-63591295 None:intergenic 45.0%
AATTGTGGACAGGTTGTAGC+AGG + chr4_3:63593890-63593909 None:intergenic 45.0%
CAAGAATGGAAGAAATGGGG+TGG + chr4_3:63594046-63594065 None:intergenic 45.0%
CTCATAGAAGGGAGAAGAAG+AGG + chr4_3:63594079-63594098 None:intergenic 45.0%
!! GTGAGAGAGTATTGGGAAAG+TGG - chr4_3:63594541-63594560 Msa0655170:intron 45.0%
AATGGCTGGAGAAATGGAGA+AGG - chr4_3:63594575-63594594 Msa0655170:intron 45.0%
AACAGTTGACAGGCTATAGC+AGG - chr4_3:63594652-63594671 Msa0655170:intron 45.0%
CCCTCCTGGAAAACAAAAAG+TGG + chr4_3:63594985-63595004 None:intergenic 45.0%
CAATGAAAGGAACGTTGCAG+GGG + chr4_3:63595093-63595112 None:intergenic 45.0%
CTATTGCTGCCATATTGTGC+AGG - chr4_3:63596185-63596204 Msa0655170:intron 45.0%
ACCTTCTCACCTGCACAATA+TGG + chr4_3:63596197-63596216 None:intergenic 45.0%
! TAAATGAGAGGGTGCAGTCA+AGG - chr4_3:63596485-63596504 Msa0655170:CDS 45.0%
CACTTGTGACAGGATTCTTC+AGG - chr4_3:63596552-63596571 Msa0655170:CDS 45.0%
!! TTTATAATATTACATAAATA+TGG + chr4_3:63595292-63595311 None:intergenic 5.0%
!!! TTATTTATTATTTTTTTTTC+GGG - chr4_3:63595340-63595359 Msa0655170:intron 5.0%
!!! AATTAATTTAAATTTTCATT+TGG + chr4_3:63595389-63595408 None:intergenic 5.0%
!!! AAAATAAATATTTTTGTTAA+GGG - chr4_3:63595729-63595748 Msa0655170:intron 5.0%
! GAGACATTCTTTGGGGGTTG+TGG - chr4_3:63591153-63591172 Msa0655170:CDS 50.0%
! GACATTCTTTGGGGGTTGTG+GGG - chr4_3:63591155-63591174 Msa0655170:CDS 50.0%
GTGGGGTCCACAAAAACCAA+AGG - chr4_3:63591172-63591191 Msa0655170:CDS 50.0%
GGTGAGAAACACCCACAAAG+TGG + chr4_3:63594013-63594032 None:intergenic 50.0%
GAGGGAGAGACTCACAAGAA+TGG + chr4_3:63594060-63594079 None:intergenic 50.0%
ACACAAGTGTGATGTGGTGC+TGG + chr4_3:63594244-63594263 None:intergenic 50.0%
!! TGGAGTAGGTGCTGTTTGTG+TGG + chr4_3:63594313-63594332 None:intergenic 50.0%
TCACTAGTGTCTAGTGGTGG+TGG + chr4_3:63594898-63594917 None:intergenic 50.0%
TGGTCACTAGTGTCTAGTGG+TGG + chr4_3:63594901-63594920 None:intergenic 50.0%
AGGAACGTTGCAGGGGAAAT+TGG + chr4_3:63595086-63595105 None:intergenic 50.0%
GTTACTACTCCTCCTGTACC+AGG - chr4_3:63595441-63595460 Msa0655170:intron 50.0%
GCCATATTGTGCAGGTGAGA+AGG - chr4_3:63596193-63596212 Msa0655170:intron 50.0%
CACCCAATTGAACCACGTCA+TGG + chr4_3:63596227-63596246 None:intergenic 50.0%
GTGCAGTCAAGGTCATGCAA+AGG - chr4_3:63596496-63596515 Msa0655170:CDS 50.0%
AGTGCAGCAAGAGTTGGCAT+TGG + chr4_3:63596536-63596555 None:intergenic 50.0%
GTCACAAGTGCAGCAAGAGT+TGG + chr4_3:63596542-63596561 None:intergenic 50.0%
ACTCTTGCTGCACTTGTGAC+AGG - chr4_3:63596542-63596561 Msa0655170:CDS 50.0%
GGTGAGAAGGGAGACAGTGA+GGG + chr4_3:63591245-63591264 None:intergenic 55.0%
ACCTGAAGGAGGGGATGAGA+GGG + chr4_3:63591267-63591286 None:intergenic 55.0%
TACCTGAAGGAGGGGATGAG+AGG + chr4_3:63591268-63591287 None:intergenic 55.0%
CAAGACATGGTGAACCCTCC+TGG + chr4_3:63594999-63595018 None:intergenic 55.0%
AGGGAGACAGTGAGGGCAGA+TGG + chr4_3:63591238-63591257 None:intergenic 60.0%
GGGTGAGAAGGGAGACAGTG+AGG + chr4_3:63591246-63591265 None:intergenic 60.0%
GGGGATGAGAGGGGTGAGAA+GGG + chr4_3:63591257-63591276 None:intergenic 60.0%
AGGGGATGAGAGGGGTGAGA+AGG + chr4_3:63591258-63591277 None:intergenic 60.0%
CCTGAAGGAGGGGATGAGAG+GGG + chr4_3:63591266-63591285 None:intergenic 60.0%
CCCCTCTCATCCCCTCCTTC+AGG - chr4_3:63591263-63591282 Msa0655170:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 63591063 63596606 63591063 ID=Msa0655170;Name=Msa0655170
chr4_3 mRNA 63591063 63596606 63591063 ID=Msa0655170-mRNA-1;Parent=Msa0655170;Name=Msa0655170-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|0.66|3|0|151
chr4_3 exon 63596385 63596606 63596385 ID=Msa0655170-mRNA-1:exon:17917;Parent=Msa0655170-mRNA-1
chr4_3 exon 63591388 63591462 63591388 ID=Msa0655170-mRNA-1:exon:17916;Parent=Msa0655170-mRNA-1
chr4_3 exon 63591063 63591218 63591063 ID=Msa0655170-mRNA-1:exon:17915;Parent=Msa0655170-mRNA-1
chr4_3 CDS 63596385 63596606 63596385 ID=Msa0655170-mRNA-1:cds;Parent=Msa0655170-mRNA-1
chr4_3 CDS 63591388 63591462 63591388 ID=Msa0655170-mRNA-1:cds;Parent=Msa0655170-mRNA-1
chr4_3 CDS 63591063 63591218 63591063 ID=Msa0655170-mRNA-1:cds;Parent=Msa0655170-mRNA-1
Gene Sequence

>Msa0655170

ATGAGAGGAAGTGGAAGTGACCCATCATCAGAAGCAAAGGGAGACATGAAAGTGAATCAGAAACCTGCATGGTTAGAGAGGTTAATGGGTGAGACATTCTTTGGGGGTTGTGGGGTCCACAAAAACCAAAGGAAGAACGAAAAGAACATCCTTTGTTTGCACTGTTGTCTCACCATCTGCCCTCACTGTCTCCCTTCTCACCCCTCTCATCCCCTCCTTCAGGTGAGAAGGTATGTTTACCATGACGTGGTTCAATTGGGTGATCTTGAAAAGCTCATCGATTGCTCCTATATTCAGCCATATACGATTAACGGTGCGAAAGTGATATTCTTAAATGAGAGGGTGCAGTCAAGGTCATGCAAAGGTACTACTACTGCTGCCAATGCCAACTCTTGCTGCACTTGTGACAGGATTCTTCAGGATCCCTTCCATTTCTGTTCTCTCTCATGCAAG

Protein sequence

>Msa0655170

MRGSGSDPSSEAKGDMKVNQKPAWLERLMGETFFGGCGVHKNQRKNEKNILCLHCCLTICPHCLPSHPSHPLLQVRRYVYHDVVQLGDLEKLIDCSYIQPYTINGAKVIFLNERVQSRSCKGTTTAANANSCCTCDRILQDPFHFCSLSCK