Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656070 | XP_013455733.1 | 78.750 | 240 | 41 | 4 | 1 | 236 | 1 | 234 | 1.45e-119 | 350 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656070 | sp|O64703|AGL29_ARATH | 31.902 | 163 | 95 | 6 | 9 | 159 | 2 | 160 | 3.84e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656070 | A0A072UJ33 | 78.750 | 240 | 41 | 4 | 1 | 236 | 1 | 234 | 6.92e-120 | 350 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0656070 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656070 | MtrunA17_Chr4g0025531 | 78.750 | 240 | 41 | 4 | 1 | 236 | 1 | 234 | 1.33e-123 | 350 |
| Msa0656070 | MtrunA17_Chr3g0135891 | 50.376 | 133 | 44 | 4 | 106 | 222 | 16 | 142 | 1.51e-31 | 113 |
| Msa0656070 | MtrunA17_Chr1g0208561 | 28.571 | 168 | 107 | 2 | 1 | 158 | 1 | 165 | 4.26e-16 | 74.7 |
| Msa0656070 | MtrunA17_Chr5g0422941 | 25.101 | 247 | 149 | 6 | 1 | 226 | 1 | 232 | 6.71e-16 | 74.3 |
| Msa0656070 | MtrunA17_Chr3g0099421 | 28.000 | 200 | 129 | 4 | 1 | 185 | 26 | 225 | 1.23e-15 | 73.9 |
| Msa0656070 | MtrunA17_Chr8g0355091 | 39.130 | 92 | 56 | 0 | 1 | 92 | 1 | 92 | 1.86e-15 | 73.2 |
| Msa0656070 | MtrunA17_Chr1g0149391 | 44.444 | 72 | 40 | 0 | 1 | 72 | 1 | 72 | 2.26e-15 | 72.8 |
| Msa0656070 | MtrunA17_Chr3g0099411 | 39.130 | 92 | 56 | 0 | 1 | 92 | 1 | 92 | 3.57e-15 | 72.0 |
| Msa0656070 | MtrunA17_Chr1g0206721 | 28.824 | 170 | 107 | 3 | 1 | 156 | 1 | 170 | 3.78e-15 | 72.4 |
| Msa0656070 | MtrunA17_Chr1g0206991 | 44.444 | 72 | 40 | 0 | 1 | 72 | 1 | 72 | 3.81e-15 | 71.2 |
| Msa0656070 | MtrunA17_Chr1g0206701 | 39.130 | 92 | 56 | 0 | 1 | 92 | 1 | 92 | 4.18e-15 | 72.0 |
| Msa0656070 | MtrunA17_Chr1g0208581 | 43.056 | 72 | 41 | 0 | 1 | 72 | 1 | 72 | 5.32e-15 | 71.6 |
| Msa0656070 | MtrunA17_Chr8g0379021 | 29.747 | 158 | 104 | 2 | 4 | 156 | 7 | 162 | 6.34e-15 | 70.5 |
| Msa0656070 | MtrunA17_Chr3g0089141 | 28.313 | 166 | 106 | 2 | 1 | 156 | 1 | 163 | 6.51e-15 | 71.2 |
| Msa0656070 | MtrunA17_Chr2g0292791 | 39.130 | 92 | 56 | 0 | 1 | 92 | 1 | 92 | 8.89e-15 | 71.2 |
| Msa0656070 | MtrunA17_Chr3g0119901 | 40.659 | 91 | 52 | 1 | 1 | 89 | 1 | 91 | 1.06e-14 | 70.5 |
| Msa0656070 | MtrunA17_Chr2g0317481 | 41.667 | 72 | 42 | 0 | 1 | 72 | 1 | 72 | 1.32e-14 | 70.9 |
| Msa0656070 | MtrunA17_Chr2g0317451 | 41.667 | 72 | 42 | 0 | 1 | 72 | 1 | 72 | 1.37e-14 | 70.9 |
| Msa0656070 | MtrunA17_Chr5g0422421 | 37.500 | 88 | 55 | 0 | 1 | 88 | 1 | 88 | 1.58e-14 | 70.5 |
| Msa0656070 | MtrunA17_Chr1g0188671 | 40.244 | 82 | 49 | 0 | 1 | 82 | 39 | 120 | 2.30e-14 | 70.5 |
| Msa0656070 | MtrunA17_Chr3g0085241 | 43.902 | 82 | 45 | 1 | 4 | 85 | 36 | 116 | 8.01e-14 | 68.9 |
| Msa0656070 | MtrunA17_Chr5g0419601 | 41.667 | 72 | 42 | 0 | 1 | 72 | 1 | 72 | 1.32e-13 | 68.2 |
| Msa0656070 | MtrunA17_Chr2g0333981 | 28.485 | 165 | 104 | 5 | 4 | 156 | 7 | 169 | 1.52e-13 | 66.6 |
| Msa0656070 | MtrunA17_Chr2g0325971 | 40.278 | 72 | 43 | 0 | 1 | 72 | 1 | 72 | 1.93e-13 | 67.4 |
| Msa0656070 | MtrunA17_Chr2g0300421 | 33.696 | 92 | 61 | 0 | 1 | 92 | 1 | 92 | 6.88e-13 | 64.7 |
| Msa0656070 | MtrunA17_Chr1g0187361 | 33.696 | 92 | 61 | 0 | 1 | 92 | 1 | 92 | 9.37e-13 | 65.5 |
| Msa0656070 | MtrunA17_Chr3g0089151 | 38.889 | 72 | 44 | 0 | 1 | 72 | 1 | 72 | 9.89e-13 | 63.5 |
| Msa0656070 | MtrunA17_Chr4g0052081 | 38.571 | 70 | 43 | 0 | 9 | 78 | 2 | 71 | 2.06e-12 | 63.5 |
| Msa0656070 | MtrunA17_Chr3g0111841 | 44.828 | 58 | 32 | 0 | 15 | 72 | 2 | 59 | 1.75e-11 | 58.5 |
| Msa0656070 | MtrunA17_Chr2g0300441 | 28.099 | 121 | 74 | 1 | 1 | 121 | 1 | 108 | 1.79e-11 | 62.0 |
| Msa0656070 | MtrunA17_Chr4g0052061 | 36.111 | 72 | 46 | 0 | 9 | 80 | 2 | 73 | 2.77e-11 | 60.1 |
| Msa0656070 | MtrunA17_Chr8g0376821 | 33.750 | 80 | 52 | 1 | 9 | 87 | 2 | 81 | 6.22e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0656070 | AT4G36590.1 | 29.940 | 167 | 100 | 5 | 5 | 156 | 3 | 167 | 3.33e-16 | 75.9 |
| Msa0656070 | AT2G34440.1 | 31.902 | 163 | 95 | 6 | 9 | 159 | 2 | 160 | 3.91e-16 | 73.9 |
| Msa0656070 | AT1G29962.1 | 45.000 | 80 | 43 | 1 | 1 | 80 | 1 | 79 | 8.70e-16 | 73.2 |
| Msa0656070 | AT5G60440.1 | 27.397 | 219 | 131 | 7 | 7 | 214 | 5 | 206 | 7.03e-14 | 70.1 |
| Msa0656070 | AT2G24840.1 | 40.476 | 84 | 48 | 1 | 7 | 88 | 61 | 144 | 1.10e-13 | 68.9 |
| Msa0656070 | AT1G28460.1 | 43.590 | 78 | 43 | 1 | 1 | 78 | 1 | 77 | 3.39e-13 | 66.2 |
| Msa0656070 | AT3G04100.1 | 36.471 | 85 | 51 | 1 | 2 | 86 | 7 | 88 | 2.67e-12 | 64.3 |
| Msa0656070 | AT1G01530.1 | 33.645 | 107 | 67 | 1 | 5 | 107 | 3 | 109 | 7.03e-12 | 63.5 |
| Msa0656070 | AT3G66656.1 | 42.188 | 64 | 37 | 0 | 9 | 72 | 2 | 65 | 1.00e-11 | 62.0 |
| Msa0656070 | AT1G28450.1 | 40.000 | 80 | 47 | 1 | 1 | 80 | 1 | 79 | 7.42e-11 | 59.7 |
Find 43 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAGTTAACAACGCTTTC+AGG | 0.127487 | 4_3:-65140466 | Msa0656070:CDS |
| TTGAAGATGTTGGAAAGTTC+TGG | 0.270990 | 4_3:-65140235 | Msa0656070:CDS |
| TGTTTATCTGATCATATATC+TGG | 0.321316 | 4_3:+65139619 | None:intergenic |
| ACACAAGGAGTCAACCTTAT+TGG | 0.323352 | 4_3:-65139682 | Msa0656070:CDS |
| GATGGTTCTCCATAACAAAA+TGG | 0.328060 | 4_3:+65140403 | None:intergenic |
| TTTCTTTCACTTGATCATAT+TGG | 0.336690 | 4_3:+65140176 | None:intergenic |
| ATCATTTCCTCTTCAGTTGA+AGG | 0.352137 | 4_3:+65140340 | None:intergenic |
| TGAAGAGGAAATGATGAAAC+TGG | 0.354714 | 4_3:-65140332 | Msa0656070:CDS |
| ATCCTCCGCTTGCACCAATA+AGG | 0.357163 | 4_3:+65139668 | None:intergenic |
| ATTGGTGCAAGCGGAGGATA+TGG | 0.361451 | 4_3:-65139664 | Msa0656070:CDS |
| ATTCTCATGCTTTCTCCAAC+GGG | 0.372760 | 4_3:-65140430 | Msa0656070:CDS |
| TGTTGGAAAGTTCTGGATAT+TGG | 0.391346 | 4_3:-65140228 | Msa0656070:CDS |
| TTTCTTATAGATTCAGAAGA+TGG | 0.420510 | 4_3:+65140385 | None:intergenic |
| TTTATTTGCGACAGCAACTA+AGG | 0.428054 | 4_3:+65140144 | None:intergenic |
| CTGAGTTAACAACGCTTTCA+GGG | 0.433355 | 4_3:-65140465 | Msa0656070:CDS |
| GCATTTACAACGAGAAAGTC+TGG | 0.455029 | 4_3:-65140505 | Msa0656070:CDS |
| TTTCCTCTTGATGGCCTCTT+CGG | 0.457920 | 4_3:+65140577 | None:intergenic |
| TTGATGTCCTCAATGACATA+AGG | 0.468063 | 4_3:+65139911 | None:intergenic |
| GACTTCATTCAGTTCCTCAA+TGG | 0.472764 | 4_3:+65139946 | None:intergenic |
| TGTAGTAATTTCTACCATTG+AGG | 0.489642 | 4_3:-65139960 | Msa0656070:intron |
| TATTCTCATGCTTTCTCCAA+CGG | 0.513625 | 4_3:-65140431 | Msa0656070:CDS |
| TAACAAAATGGTTTCCCCGT+TGG | 0.519377 | 4_3:+65140415 | None:intergenic |
| ATCAACAAAGATCATGAAGT+TGG | 0.522438 | 4_3:-65139893 | Msa0656070:CDS |
| TTATCCAAAAGGTAAAGGTA+TGG | 0.531949 | 4_3:-65139731 | Msa0656070:intron |
| TGTGTTTCTATATCATGAGA+AGG | 0.540228 | 4_3:+65139700 | None:intergenic |
| TGAAAATCCTTCAACTGAAG+AGG | 0.542125 | 4_3:-65140347 | Msa0656070:CDS |
| AAATCCTCCTTATGTCATTG+AGG | 0.570912 | 4_3:-65139918 | Msa0656070:CDS |
| GTCAACCTTATTGGTGCAAG+CGG | 0.586884 | 4_3:-65139673 | Msa0656070:CDS |
| AACCTTATTGGTGCAAGCGG+AGG | 0.596051 | 4_3:-65139670 | Msa0656070:CDS |
| TCCAAAAGGTAAAGGTATGG+TGG | 0.601173 | 4_3:-65139728 | Msa0656070:intron |
| GAGTAAGAATGGCGCCGAAG+AGG | 0.604647 | 4_3:-65140591 | None:intergenic |
| ATGTCCTCAATGACATAAGG+AGG | 0.622929 | 4_3:+65139914 | None:intergenic |
| TGGATATTGGTCGATACAAG+AGG | 0.628309 | 4_3:-65140215 | Msa0656070:CDS |
| TGAGTTAACAACGCTTTCAG+GGG | 0.630940 | 4_3:-65140464 | Msa0656070:CDS |
| GCAAGCGGAGGATATGGAAG+TGG | 0.633800 | 4_3:-65139658 | Msa0656070:CDS |
| GCGCCGAAGAGGCCATCAAG+AGG | 0.648337 | 4_3:-65140580 | Msa0656070:CDS |
| TGAAAGCGTTGTTAACTCAG+AGG | 0.671628 | 4_3:+65140468 | None:intergenic |
| GGAGGAGAGCTTAACCCTCG+TGG | 0.693010 | 4_3:-65140097 | Msa0656070:intron |
| TTCTCATGCTTTCTCCAACG+GGG | 0.698001 | 4_3:-65140429 | Msa0656070:CDS |
| AAGATGTACACTTACCACGA+GGG | 0.717576 | 4_3:+65140083 | None:intergenic |
| AAGCATGAGAATATCAACAG+AGG | 0.718686 | 4_3:+65140441 | None:intergenic |
| TCTCATGATATAGAAACACA+AGG | 0.726046 | 4_3:-65139697 | Msa0656070:CDS |
| AAAGTCTGGAATTTACAACA+AGG | 0.757794 | 4_3:-65140491 | Msa0656070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAAAAAAATGATGATTTTT+TGG | - | chr4_3:65139920-65139939 | Msa0656070:CDS | 15.0% |
| !! | ATAAATAATCTCTTGAAAAA+TGG | - | chr4_3:65140095-65140114 | Msa0656070:intron | 15.0% |
| !!! | TGAAAAAAATGATGATTTTT+TGG | - | chr4_3:65139920-65139939 | Msa0656070:CDS | 15.0% |
| !! | ATAAATAATCTCTTGAAAAA+TGG | - | chr4_3:65140095-65140114 | Msa0656070:intron | 15.0% |
| !! | CTTAAAATAATCAGACAAAA+AGG | + | chr4_3:65140213-65140232 | None:intergenic | 20.0% |
| !! | TCAAGCAAAAAAAAAAAAAC+AGG | + | chr4_3:65140366-65140385 | None:intergenic | 20.0% |
| !!! | TTCAATCTTTTTTATCCAAA+AGG | - | chr4_3:65140471-65140490 | Msa0656070:CDS | 20.0% |
| !! | CTTAAAATAATCAGACAAAA+AGG | + | chr4_3:65140213-65140232 | None:intergenic | 20.0% |
| !! | TCAAGCAAAAAAAAAAAAAC+AGG | + | chr4_3:65140366-65140385 | None:intergenic | 20.0% |
| !!! | TTCAATCTTTTTTATCCAAA+AGG | - | chr4_3:65140471-65140490 | Msa0656070:CDS | 20.0% |
| !!! | ATTTTTTGTTTTCCTCTTGA+TGG | + | chr4_3:65139648-65139667 | None:intergenic | 25.0% |
| ! | TTTCTTATAGATTCAGAAGA+TGG | + | chr4_3:65139831-65139850 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGATGT+TGG | - | chr4_3:65139968-65139987 | Msa0656070:intron | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | + | chr4_3:65140040-65140059 | None:intergenic | 25.0% |
| ! | AATAATCTCTTGAAAAATGG+AGG | - | chr4_3:65140098-65140117 | Msa0656070:CDS | 25.0% |
| !!! | CTGATTATTTTAAGTGAATC+TGG | - | chr4_3:65140219-65140238 | Msa0656070:CDS | 25.0% |
| !!! | TTTTTTGCTTGACATTTACT+AGG | - | chr4_3:65140374-65140393 | Msa0656070:CDS | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | + | chr4_3:65140463-65140482 | None:intergenic | 25.0% |
| !!! | CTTTTTTATCCAAAAGGTAA+AGG | - | chr4_3:65140477-65140496 | Msa0656070:CDS | 25.0% |
| !!! | ATTTTTTGTTTTCCTCTTGA+TGG | + | chr4_3:65139648-65139667 | None:intergenic | 25.0% |
| ! | TTTCTTATAGATTCAGAAGA+TGG | + | chr4_3:65139831-65139850 | None:intergenic | 25.0% |
| ! | ACGTAAAAATTTGAAGATGT+TGG | - | chr4_3:65139968-65139987 | Msa0656070:intron | 25.0% |
| ! | TTTCTTTCACTTGATCATAT+TGG | + | chr4_3:65140040-65140059 | None:intergenic | 25.0% |
| ! | AATAATCTCTTGAAAAATGG+AGG | - | chr4_3:65140098-65140117 | Msa0656070:CDS | 25.0% |
| !!! | CTGATTATTTTAAGTGAATC+TGG | - | chr4_3:65140219-65140238 | Msa0656070:CDS | 25.0% |
| !!! | TTTTTTGCTTGACATTTACT+AGG | - | chr4_3:65140374-65140393 | Msa0656070:CDS | 25.0% |
| ! | AAAAAGATTGAATCCATGAA+AGG | + | chr4_3:65140463-65140482 | None:intergenic | 25.0% |
| !!! | CTTTTTTATCCAAAAGGTAA+AGG | - | chr4_3:65140477-65140496 | Msa0656070:CDS | 25.0% |
| ! | AAAGTCTGGAATTTACAACA+AGG | - | chr4_3:65139722-65139741 | Msa0656070:CDS | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | - | chr4_3:65139938-65139957 | Msa0656070:CDS | 30.0% |
| TGTAGTAATTTCTACCATTG+AGG | - | chr4_3:65140253-65140272 | Msa0656070:CDS | 30.0% | |
| ATCAACAAAGATCATGAAGT+TGG | - | chr4_3:65140320-65140339 | Msa0656070:CDS | 30.0% | |
| TTATCCAAAAGGTAAAGGTA+TGG | - | chr4_3:65140482-65140501 | Msa0656070:CDS | 30.0% | |
| ! | TGTGTTTCTATATCATGAGA+AGG | + | chr4_3:65140516-65140535 | None:intergenic | 30.0% |
| TCTCATGATATAGAAACACA+AGG | - | chr4_3:65140516-65140535 | Msa0656070:CDS | 30.0% | |
| ! | AAAGTCTGGAATTTACAACA+AGG | - | chr4_3:65139722-65139741 | Msa0656070:CDS | 30.0% |
| ! | TTTGGATAAAAAGCATGTTG+CGG | - | chr4_3:65139938-65139957 | Msa0656070:CDS | 30.0% |
| TGTAGTAATTTCTACCATTG+AGG | - | chr4_3:65140253-65140272 | Msa0656070:CDS | 30.0% | |
| ATCAACAAAGATCATGAAGT+TGG | - | chr4_3:65140320-65140339 | Msa0656070:CDS | 30.0% | |
| TTATCCAAAAGGTAAAGGTA+TGG | - | chr4_3:65140482-65140501 | Msa0656070:CDS | 30.0% | |
| ! | TGTGTTTCTATATCATGAGA+AGG | + | chr4_3:65140516-65140535 | None:intergenic | 30.0% |
| TCTCATGATATAGAAACACA+AGG | - | chr4_3:65140516-65140535 | Msa0656070:CDS | 30.0% | |
| AAGCATGAGAATATCAACAG+AGG | + | chr4_3:65139775-65139794 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | - | chr4_3:65139782-65139801 | Msa0656070:intron | 35.0% | |
| GATGGTTCTCCATAACAAAA+TGG | + | chr4_3:65139813-65139832 | None:intergenic | 35.0% | |
| TGAAAATCCTTCAACTGAAG+AGG | - | chr4_3:65139866-65139885 | Msa0656070:intron | 35.0% | |
| ATCATTTCCTCTTCAGTTGA+AGG | + | chr4_3:65139876-65139895 | None:intergenic | 35.0% | |
| TGAAGAGGAAATGATGAAAC+TGG | - | chr4_3:65139881-65139900 | Msa0656070:intron | 35.0% | |
| TTGAAGATGTTGGAAAGTTC+TGG | - | chr4_3:65139978-65139997 | Msa0656070:intron | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | - | chr4_3:65139985-65140004 | Msa0656070:intron | 35.0% |
| TTTATTTGCGACAGCAACTA+AGG | + | chr4_3:65140072-65140091 | None:intergenic | 35.0% | |
| AAATCCTCCTTATGTCATTG+AGG | - | chr4_3:65140295-65140314 | Msa0656070:CDS | 35.0% | |
| TTGATGTCCTCAATGACATA+AGG | + | chr4_3:65140305-65140324 | None:intergenic | 35.0% | |
| ATGTATTGTCGTTCCTTTCA+TGG | - | chr4_3:65140447-65140466 | Msa0656070:CDS | 35.0% | |
| AAGCATGAGAATATCAACAG+AGG | + | chr4_3:65139775-65139794 | None:intergenic | 35.0% | |
| TATTCTCATGCTTTCTCCAA+CGG | - | chr4_3:65139782-65139801 | Msa0656070:intron | 35.0% | |
| GATGGTTCTCCATAACAAAA+TGG | + | chr4_3:65139813-65139832 | None:intergenic | 35.0% | |
| TGAAAATCCTTCAACTGAAG+AGG | - | chr4_3:65139866-65139885 | Msa0656070:intron | 35.0% | |
| ATCATTTCCTCTTCAGTTGA+AGG | + | chr4_3:65139876-65139895 | None:intergenic | 35.0% | |
| TGAAGAGGAAATGATGAAAC+TGG | - | chr4_3:65139881-65139900 | Msa0656070:intron | 35.0% | |
| TTGAAGATGTTGGAAAGTTC+TGG | - | chr4_3:65139978-65139997 | Msa0656070:intron | 35.0% | |
| !! | TGTTGGAAAGTTCTGGATAT+TGG | - | chr4_3:65139985-65140004 | Msa0656070:intron | 35.0% |
| TTTATTTGCGACAGCAACTA+AGG | + | chr4_3:65140072-65140091 | None:intergenic | 35.0% | |
| AAATCCTCCTTATGTCATTG+AGG | - | chr4_3:65140295-65140314 | Msa0656070:CDS | 35.0% | |
| TTGATGTCCTCAATGACATA+AGG | + | chr4_3:65140305-65140324 | None:intergenic | 35.0% | |
| ATGTATTGTCGTTCCTTTCA+TGG | - | chr4_3:65140447-65140466 | Msa0656070:CDS | 35.0% | |
| GCATTTACAACGAGAAAGTC+TGG | - | chr4_3:65139708-65139727 | Msa0656070:CDS | 40.0% | |
| !! | TGAAAGCGTTGTTAACTCAG+AGG | + | chr4_3:65139748-65139767 | None:intergenic | 40.0% |
| TCTGAGTTAACAACGCTTTC+AGG | - | chr4_3:65139747-65139766 | Msa0656070:intron | 40.0% | |
| CTGAGTTAACAACGCTTTCA+GGG | - | chr4_3:65139748-65139767 | Msa0656070:intron | 40.0% | |
| TGAGTTAACAACGCTTTCAG+GGG | - | chr4_3:65139749-65139768 | Msa0656070:intron | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | - | chr4_3:65139783-65139802 | Msa0656070:intron | 40.0% | |
| TAACAAAATGGTTTCCCCGT+TGG | + | chr4_3:65139801-65139820 | None:intergenic | 40.0% | |
| ! | ACGGGGAAACCATTTTGTTA+TGG | - | chr4_3:65139801-65139820 | Msa0656070:intron | 40.0% |
| TGGATATTGGTCGATACAAG+AGG | - | chr4_3:65139998-65140017 | Msa0656070:intron | 40.0% | |
| AAGATGTACACTTACCACGA+GGG | + | chr4_3:65140133-65140152 | None:intergenic | 40.0% | |
| GACTTCATTCAGTTCCTCAA+TGG | + | chr4_3:65140270-65140289 | None:intergenic | 40.0% | |
| ATGTCCTCAATGACATAAGG+AGG | + | chr4_3:65140302-65140321 | None:intergenic | 40.0% | |
| ! | TCCAAAAGGTAAAGGTATGG+TGG | - | chr4_3:65140485-65140504 | Msa0656070:CDS | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr4_3:65140531-65140550 | Msa0656070:CDS | 40.0% | |
| GCATTTACAACGAGAAAGTC+TGG | - | chr4_3:65139708-65139727 | Msa0656070:CDS | 40.0% | |
| !! | TGAAAGCGTTGTTAACTCAG+AGG | + | chr4_3:65139748-65139767 | None:intergenic | 40.0% |
| TCTGAGTTAACAACGCTTTC+AGG | - | chr4_3:65139747-65139766 | Msa0656070:intron | 40.0% | |
| CTGAGTTAACAACGCTTTCA+GGG | - | chr4_3:65139748-65139767 | Msa0656070:intron | 40.0% | |
| TGAGTTAACAACGCTTTCAG+GGG | - | chr4_3:65139749-65139768 | Msa0656070:intron | 40.0% | |
| ATTCTCATGCTTTCTCCAAC+GGG | - | chr4_3:65139783-65139802 | Msa0656070:intron | 40.0% | |
| TAACAAAATGGTTTCCCCGT+TGG | + | chr4_3:65139801-65139820 | None:intergenic | 40.0% | |
| ! | ACGGGGAAACCATTTTGTTA+TGG | - | chr4_3:65139801-65139820 | Msa0656070:intron | 40.0% |
| TGGATATTGGTCGATACAAG+AGG | - | chr4_3:65139998-65140017 | Msa0656070:intron | 40.0% | |
| AAGATGTACACTTACCACGA+GGG | + | chr4_3:65140133-65140152 | None:intergenic | 40.0% | |
| GACTTCATTCAGTTCCTCAA+TGG | + | chr4_3:65140270-65140289 | None:intergenic | 40.0% | |
| ATGTCCTCAATGACATAAGG+AGG | + | chr4_3:65140302-65140321 | None:intergenic | 40.0% | |
| ! | TCCAAAAGGTAAAGGTATGG+TGG | - | chr4_3:65140485-65140504 | Msa0656070:CDS | 40.0% |
| ACACAAGGAGTCAACCTTAT+TGG | - | chr4_3:65140531-65140550 | Msa0656070:CDS | 40.0% | |
| ! | TTTCCTCTTGATGGCCTCTT+CGG | + | chr4_3:65139639-65139658 | None:intergenic | 45.0% |
| TTCTCATGCTTTCTCCAACG+GGG | - | chr4_3:65139784-65139803 | Msa0656070:intron | 45.0% | |
| GAAGATGTACACTTACCACG+AGG | + | chr4_3:65140134-65140153 | None:intergenic | 45.0% | |
| ! | GCCACCATACCTTTACCTTT+TGG | + | chr4_3:65140489-65140508 | None:intergenic | 45.0% |
| GTCAACCTTATTGGTGCAAG+CGG | - | chr4_3:65140540-65140559 | Msa0656070:CDS | 45.0% | |
| ! | TTTCCTCTTGATGGCCTCTT+CGG | + | chr4_3:65139639-65139658 | None:intergenic | 45.0% |
| TTCTCATGCTTTCTCCAACG+GGG | - | chr4_3:65139784-65139803 | Msa0656070:intron | 45.0% | |
| GAAGATGTACACTTACCACG+AGG | + | chr4_3:65140134-65140153 | None:intergenic | 45.0% | |
| ! | GCCACCATACCTTTACCTTT+TGG | + | chr4_3:65140489-65140508 | None:intergenic | 45.0% |
| GTCAACCTTATTGGTGCAAG+CGG | - | chr4_3:65140540-65140559 | Msa0656070:CDS | 45.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | - | chr4_3:65140543-65140562 | Msa0656070:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | + | chr4_3:65140548-65140567 | None:intergenic | 50.0% | |
| ATTGGTGCAAGCGGAGGATA+TGG | - | chr4_3:65140549-65140568 | Msa0656070:CDS | 50.0% | |
| AACCTTATTGGTGCAAGCGG+AGG | - | chr4_3:65140543-65140562 | Msa0656070:CDS | 50.0% | |
| ATCCTCCGCTTGCACCAATA+AGG | + | chr4_3:65140548-65140567 | None:intergenic | 50.0% | |
| ATTGGTGCAAGCGGAGGATA+TGG | - | chr4_3:65140549-65140568 | Msa0656070:CDS | 50.0% | |
| GCAAGCGGAGGATATGGAAG+TGG | - | chr4_3:65140555-65140574 | Msa0656070:CDS | 55.0% | |
| GCAAGCGGAGGATATGGAAG+TGG | - | chr4_3:65140555-65140574 | Msa0656070:CDS | 55.0% | |
| GGAGGAGAGCTTAACCCTCG+TGG | - | chr4_3:65140116-65140135 | Msa0656070:CDS | 60.0% | |
| GGAGGAGAGCTTAACCCTCG+TGG | - | chr4_3:65140116-65140135 | Msa0656070:CDS | 60.0% | |
| GCGCCGAAGAGGCCATCAAG+AGG | - | chr4_3:65139633-65139652 | Msa0656070:CDS | 65.0% | |
| GCGCCGAAGAGGCCATCAAG+AGG | - | chr4_3:65139633-65139652 | Msa0656070:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 65139630 | 65140605 | 65139630 | ID=Msa0656070;Name=Msa0656070 |
| chr4_3 | mRNA | 65139630 | 65140605 | 65139630 | ID=Msa0656070-mRNA-1;Parent=Msa0656070;Name=Msa0656070-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|236 |
| chr4_3 | exon | 65140098 | 65140605 | 65140098 | ID=Msa0656070-mRNA-1:exon:18477;Parent=Msa0656070-mRNA-1 |
| chr4_3 | exon | 65139888 | 65139977 | 65139888 | ID=Msa0656070-mRNA-1:exon:18476;Parent=Msa0656070-mRNA-1 |
| chr4_3 | exon | 65139630 | 65139742 | 65139630 | ID=Msa0656070-mRNA-1:exon:18475;Parent=Msa0656070-mRNA-1 |
| chr4_3 | CDS | 65140098 | 65140605 | 65140098 | ID=Msa0656070-mRNA-1:cds;Parent=Msa0656070-mRNA-1 |
| chr4_3 | CDS | 65139888 | 65139977 | 65139888 | ID=Msa0656070-mRNA-1:cds;Parent=Msa0656070-mRNA-1 |
| chr4_3 | CDS | 65139630 | 65139742 | 65139630 | ID=Msa0656070-mRNA-1:cds;Parent=Msa0656070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
