AlfalfaGEDB | Msa0657940

M. sativa cultivar zhongmu-4 / Msa0657940

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009898 GO:0009987 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0045087 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0098552 GO:0098562 GO:0140096 GO:1901564
PFAM: PF12796.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657940	XP_024627556.2	94.578	498	4	1	1	498	1	475	0.0	964

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657940	sp\|F4IS56\|ILK1_ARATH	73.800	500	106	2	1	498	1	477	0.0	783

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657940	MtrunA17_Chr8g0380551	94.578	498	4	1	1	498	31	505	0.0	963
Msa0657940	MtrunA17_Chr5g0443471	46.781	466	212	5	35	492	1	438	4.06e-134	396
Msa0657940	MtrunA17_Chr2g0284901	44.934	454	215	5	39	492	4	422	5.99e-127	377
Msa0657940	MtrunA17_Chr4g0042731	37.150	428	224	10	77	491	19	414	1.55e-77	249
Msa0657940	MtrunA17_Chr1g0171451	32.432	296	162	8	193	484	413	674	6.61e-38	147
Msa0657940	MtrunA17_Chr5g0427651	31.803	305	158	9	188	482	640	904	7.71e-38	148
Msa0657940	MtrunA17_Chr3g0132791	32.119	302	163	8	186	482	647	911	1.35e-36	144
Msa0657940	MtrunA17_Chr2g0294351	31.544	298	168	8	186	481	458	721	1.60e-35	140
Msa0657940	MtrunA17_Chr1g0151541	31.250	304	167	9	183	481	652	918	1.06e-33	135
Msa0657940	MtrunA17_Chr4g0068411	32.526	289	157	10	186	471	452	705	5.12e-33	133

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0657940	AT2G43850.1	73.800	500	106	2	1	498	1	477	0.0	783
Msa0657940	AT2G43850.3	73.800	500	106	2	1	498	1	477	0.0	782
Msa0657940	AT2G43850.2	73.600	500	107	2	1	498	1	477	0.0	781
Msa0657940	AT2G31800.1	73.494	498	108	2	1	498	1	474	0.0	775
Msa0657940	AT3G59830.1	71.687	498	118	1	1	498	1	475	0.0	752
Msa0657940	AT4G18950.2	44.858	457	217	6	43	497	9	432	2.57e-127	378
Msa0657940	AT3G58760.1	45.295	457	215	7	43	492	10	438	8.95e-127	378
Msa0657940	AT4G18950.1	45.133	452	213	6	43	492	9	427	3.60e-126	376
Msa0657940	AT3G58760.3	45.077	457	216	6	43	492	73	501	9.36e-126	377
Msa0657940	AT3G58760.5	45.077	457	216	6	43	492	73	501	9.36e-126	377

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Find 137 sgRNAs with CRISPR-Local

Find 597 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTCCTCTGCGGGCTT+GGG	0.353950	4_3:-67910239	None:intergenic
AAAGGTGCGACATCCTAATG+TGG	0.682578	4_3:+67906538	Msa0657940:CDS
AAATAACAAAGAGACATAAA+CGG	0.520597	4_3:+67904432	Msa0657940:five_prime_UTR
AACAATCTCCGATTCAGCTT+TGG	0.413163	4_3:+67904828	Msa0657940:CDS
AACAGTCATTGGAGTCTTCC+TGG	0.292870	4_3:-67905869	None:intergenic
AACGGATTGAGTTCATATTC+AGG	0.351808	4_3:-67905910	None:intergenic
AACTCTATCCCACGCATTTG+CGG	0.433243	4_3:-67904463	None:intergenic
AAGCATCGCTCGATCCACGT+CGG	0.735218	4_3:+67904805	Msa0657940:CDS
AATCGGAGATTGTTCCGACG+TGG	0.702781	4_3:-67904819	None:intergenic
ACACGAACCCGCATCGCATT+TGG	0.373991	4_3:+67904396	Msa0657940:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCTCTCTAAATCTAATAG+CGG	+	chr4_3:67904368-67904387	Msa0657940:five_prime_UTR	30.0%
TTCTATTGATGTTATTCAGC+CGG	-	chr4_3:67904581-67904600	None:intergenic	30.0%
TAAAATGTTAGCAGCAAATG+TGG	+	chr4_3:67905473-67905492	Msa0657940:intron	30.0%
GTTCCATTAGATAATAAGAG+AGG	+	chr4_3:67905578-67905597	Msa0657940:intron	30.0%
TTCCCTCTCTTATTATCTAA+TGG	-	chr4_3:67905584-67905603	None:intergenic	30.0%
TATTTGATCAATCTACTTGC+AGG	+	chr4_3:67906176-67906195	Msa0657940:intron	30.0%
ATTTGATCAATCTACTTGCA+GGG	+	chr4_3:67906177-67906196	Msa0657940:intron	30.0%
TATCAAGTAGCTAAATGGAA+TGG	+	chr4_3:67906204-67906223	Msa0657940:CDS	30.0%
CATCAAACAATCTGATTAAG+TGG	-	chr4_3:67906336-67906355	None:intergenic	30.0%
CATTGTAAACTAGAAAGCTA+AGG	-	chr4_3:67907044-67907063	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	67904325	67912490	67904325	ID=Msa0657940;Name=Msa0657940
chr4_3	mRNA	67904325	67912490	67904325	ID=Msa0657940-mRNA-1;Parent=Msa0657940;Name=Msa0657940-mRNA-1;_AED=0.18;_eAED=0.18;_QI=236\|0.83\|0.84\|0.92\|0.91\|0.84\|13\|87\|498
chr4_3	exon	67904325	67904523	67904325	ID=Msa0657940-mRNA-1:exon:19593;Parent=Msa0657940-mRNA-1
chr4_3	exon	67904674	67905142	67904674	ID=Msa0657940-mRNA-1:exon:19594;Parent=Msa0657940-mRNA-1
chr4_3	exon	67905685	67905759	67905685	ID=Msa0657940-mRNA-1:exon:19595;Parent=Msa0657940-mRNA-1
chr4_3	exon	67905865	67905969	67905865	ID=Msa0657940-mRNA-1:exon:19596;Parent=Msa0657940-mRNA-1
chr4_3	exon	67906198	67906283	67906198	ID=Msa0657940-mRNA-1:exon:19597;Parent=Msa0657940-mRNA-1
chr4_3	exon	67906505	67906625	67906505	ID=Msa0657940-mRNA-1:exon:19598;Parent=Msa0657940-mRNA-1
chr4_3	exon	67906827	67906975	67906827	ID=Msa0657940-mRNA-1:exon:19599;Parent=Msa0657940-mRNA-1
chr4_3	exon	67907137	67907199	67907137	ID=Msa0657940-mRNA-1:exon:19600;Parent=Msa0657940-mRNA-1
chr4_3	exon	67907303	67907424	67907303	ID=Msa0657940-mRNA-1:exon:19601;Parent=Msa0657940-mRNA-1
chr4_3	exon	67908678	67908763	67908678	ID=Msa0657940-mRNA-1:exon:19602;Parent=Msa0657940-mRNA-1
chr4_3	exon	67910212	67910336	67910212	ID=Msa0657940-mRNA-1:exon:19603;Parent=Msa0657940-mRNA-1
chr4_3	exon	67910421	67910552	67910421	ID=Msa0657940-mRNA-1:exon:19604;Parent=Msa0657940-mRNA-1
chr4_3	exon	67912403	67912490	67912403	ID=Msa0657940-mRNA-1:exon:19605;Parent=Msa0657940-mRNA-1
chr4_3	five_prime_UTR	67904325	67904523	67904325	ID=Msa0657940-mRNA-1:five_prime_utr;Parent=Msa0657940-mRNA-1
chr4_3	five_prime_UTR	67904674	67904710	67904674	ID=Msa0657940-mRNA-1:five_prime_utr;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67904711	67905142	67904711	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67905685	67905759	67905685	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67905865	67905969	67905865	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67906198	67906283	67906198	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67906505	67906625	67906505	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67906827	67906975	67906827	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67907137	67907199	67907137	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67907303	67907424	67907303	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67908678	67908763	67908678	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67910212	67910336	67910212	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67910421	67910552	67910421	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	CDS	67912403	67912403	67912403	ID=Msa0657940-mRNA-1:cds;Parent=Msa0657940-mRNA-1
chr4_3	three_prime_UTR	67912404	67912490	67912404	ID=Msa0657940-mRNA-1:three_prime_utr;Parent=Msa0657940-mRNA-1

Gene Sequence

>Msa0657940

ATGGAAAACATTGCCGCGCAACTAAAGCGCGGCATCTCGCGCCAATTCTCCTCCGGCTCCTTACGCAAAACTCTCAGTCGTCAATTCACACGTCAAGCATCGCTCGATCCACGTCGGAACAATCTCCGATTCAGCTTTGGTCGTCAATCATCGCTAGACCCGATCCGACGGAGTCCTGGCGATGATCAAGACCAGGTGGAACTCACCGTACCGGAGAATCTCGACTCCACCATGCAGCTTTTGTTCATGGCGTGCCGTGGGGATGTTAAAGGAGTTGAAGATTTGCTTAACGAAGGGATTGATGTTAATAGCATTGATCTTGATGGCCGCACTGCTCTTCATATCGCTGCTTGCGAAGGACATGTTGATGTTGCGAAGCTTTTGCTCAGCCGTAAGGCCAATCTTGATGCTCGTGATCGTTGGGGTAGTACGGCAGCGGCTGATGCTAAATATTATGGAAATACAGAAGTTTATTATATGTTGAAGGCGCGTGGAGCAAAAGTGCCGAAAACCAGGAAGACTCCAATGACTGTTGCAAATCCTCGTGAAGTTCCTGAATATGAACTCAATCCGTTAGAACTACAGGTTCGGAAGAGTGATGGTATTTCAACGGGGACATATCAAGTAGCTAAATGGAATGGCACAAAGGTTGCGGTGAAGATACTTGATAAGGACAGTTATTCAAATCCTGATACCATAAATATTTTCAAACACGAGCTCACACTATTGGAAAAGGTGCGACATCCTAATGTGGTCCAGTTTGTTGGAGCTGTTACCCAAAACATACCTATGATGATTGTTCGAGAGTACCATGCTAAGGGTGACTTAACAGGTTATATTCAAAAGAAAGGGCGTTTGTCCCCATCAAAAGTTCTACGGTTTTCTCTTGATATTGCTAGGCAAGTTACCATTTTAAGCAAATATGCTGGGTGGAATCTTTGTGAACATATCTTTAGAAAATCGTTGACGGGCATGAATTATCTTCATGAATGCAAGCCAGATCCTATTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGGCAATTGAAGGTAGCTGGATTTGGCACTGTGAGATTTTCACTAATAACACCTGACAAAGCATTGTTAGAACAGCCTGAGGCCAACATTGACCCTTCAAGCTTGTACGTGGCACCAGAGATTTACAGAGGTGATGTATTCGATAGAAGTGTGGATGCATATTCTTTTGGTCTCATTGTATATGAGATGATAGAGGGTATACCGCCCTTCCATCCCAAGCCCGCAGAGGAAGCTTTGAAACTGATGTGTTTAGAAGGGAAGAGACCACAATTCAAGATCAAAACAAAAAGTTATCCTCCGGATTTGAAAGAGTTGATTGAGGAATGTTGGGATCCAGAACCTGAGGTCAGACCAACATTTTCTCAGGTCATTGCCCGGTTGGATAAGATTGTTGCAAATTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAACTTCCTTGA

Protein sequence

>Msa0657940

MENIAAQLKRGISRQFSSGSLRKTLSRQFTRQASLDPRRNNLRFSFGRQSSLDPIRRSPGDDQDQVELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVDVAKLLLSRKANLDARDRWGSTAAADAKYYGNTEVYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGISTGTYQVAKWNGTKVAVKILDKDSYSNPDTINIFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVREYHAKGDLTGYIQKKGRLSPSKVLRFSLDIARQVTILSKYAGWNLCEHIFRKSLTGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGTVRFSLITPDKALLEQPEANIDPSSLYVAPEIYRGDVFDRSVDAYSFGLIVYEMIEGIPPFHPKPAEEALKLMCLEGKRPQFKIKTKSYPPDLKELIEECWDPEPEVRPTFSQVIARLDKIVANCSKQGWWKDTFKLP*