AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0658160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0658160 MtrunA17_Chr8g0381011 79.255 188 14 2 1 175 1 176 5.41e-99 283
Msa0658160 MtrunA17_Chr2g0303181 65.000 180 51 3 1 175 1 173 1.06e-76 226
Msa0658160 MtrunA17_Chr4g0054701 73.636 110 29 0 2 111 31 140 1.55e-55 172
Msa0658160 MtrunA17_Chr4g0047341 52.778 72 34 0 41 112 40 111 9.01e-22 86.3
Msa0658160 MtrunA17_Chr4g0047341 45.588 68 36 1 3 70 41 107 7.69e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0658160 AT4G20380.2 65.054 186 52 4 1 175 6 189 2.12e-64 196
Msa0658160 AT4G20380.7 65.054 186 52 4 1 175 6 189 2.12e-64 196
Msa0658160 AT4G20380.6 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa0658160 AT4G20380.3 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa0658160 AT4G20380.4 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa0658160 AT4G20380.1 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa0658160 AT4G20380.5 65.054 186 52 4 1 175 1 184 2.29e-64 196
Msa0658160 AT4G20380.8 57.075 212 52 4 1 175 1 210 4.49e-60 186
Msa0658160 AT1G32540.1 72.727 110 30 0 2 111 65 174 3.10e-55 173
Msa0658160 AT1G32540.3 72.727 110 30 0 2 111 32 141 4.05e-54 169
Msa0658160 AT1G32540.3 41.667 96 52 2 42 136 33 125 9.73e-14 65.5
Msa0658160 AT1G32540.2 72.727 110 30 0 2 111 32 141 4.05e-54 169
Msa0658160 AT1G32540.2 41.667 96 52 2 42 136 33 125 9.73e-14 65.5
Msa0658160 AT1G32540.5 74.074 108 28 0 2 109 32 139 1.59e-53 167
Msa0658160 AT1G32540.5 41.667 96 52 2 42 136 33 125 1.13e-13 65.5
Msa0658160 AT4G20380.9 69.106 123 27 3 1 112 1 123 8.50e-50 157
Msa0658160 AT4G20380.9 43.956 91 48 1 43 130 4 94 1.89e-16 72.0
Msa0658160 AT1G32540.7 76.389 72 17 0 2 73 65 136 1.88e-36 124
Msa0658160 AT1G32540.7 52.941 68 31 1 42 108 66 133 5.94e-14 65.9
Msa0658160 AT1G32540.4 76.389 72 17 0 2 73 32 103 1.10e-35 120
Msa0658160 AT1G32540.4 52.941 68 31 1 42 108 33 100 1.28e-13 64.3
Msa0658160 AT1G32540.6 76.389 72 17 0 2 73 32 103 1.10e-35 120
Msa0658160 AT1G32540.6 52.941 68 31 1 42 108 33 100 1.28e-13 64.3
Msa0658160 AT4G21610.1 52.703 74 35 0 40 113 57 130 7.76e-22 86.7
Msa0658160 AT4G21610.2 53.425 73 34 0 40 112 57 129 6.29e-21 84.3

Find 88 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGATTTGATAATAATTT+AGG 0.148987 4_3:+68191415 Msa0658160:five_prime_UTR
CACTGTTTGGCTCTGAGATT+GGG 0.264386 4_3:-68196107 None:intergenic
ACACTCTTTCGAAATTTCTT+TGG 0.276383 4_3:-68191474 None:intergenic
ACCAGGAGGCTTTGAATGTT+TGG 0.280256 4_3:+68196782 Msa0658160:three_prime_UTR
TTAAGAAGAAAACGTTGATA+TGG 0.280422 4_3:-68191729 None:intergenic
TCTAACCCTTACATCGAAAA+AGG 0.308859 4_3:-68196454 None:intergenic
TGTTGATTCAAGTGGGAAAT+TGG 0.322882 4_3:+68196150 Msa0658160:CDS
CCACTGTTTGGCTCTGAGAT+TGG 0.323278 4_3:-68196108 None:intergenic
ATTCGTTTGAATGAAACTAT+TGG 0.341778 4_3:-68196427 None:intergenic
ACAACACTCATGTATCCTTA+TGG 0.360459 4_3:+68194706 Msa0658160:CDS
TGATTGAATTGAATGAGAAT+TGG 0.366028 4_3:-68191662 None:intergenic
TATCAGTATGTATATGTATA+TGG 0.369936 4_3:+68196481 Msa0658160:three_prime_UTR
TTTACGAGTGATTTGTGAAA+AGG 0.370779 4_3:+68196744 Msa0658160:three_prime_UTR
TAAGAAGAAAACGTTGATAT+GGG 0.372153 4_3:-68191728 None:intergenic
AAACGTTGATATGGGGATAA+AGG 0.376173 4_3:-68191720 None:intergenic
ATGCGAGGAAAATAAAATAT+TGG 0.385227 4_3:+68191526 Msa0658160:five_prime_UTR
GATTGAATTGAATGAGAATT+GGG 0.398848 4_3:-68191661 None:intergenic
AAGTAGCCCATGTCCCTTGC+GGG 0.401008 4_3:+68194674 Msa0658160:CDS
GGCAGTTCCCGCAAGGGACA+TGG 0.407023 4_3:-68194681 None:intergenic
CATTCAAAGCCTCCTGGTCC+TGG 0.415471 4_3:-68196777 None:intergenic
AATAATGCAGCCATGATAGA+AGG 0.426858 4_3:+68196327 Msa0658160:exon
TGGGAATAATTTGATTGTGT+TGG 0.428702 4_3:-68191642 None:intergenic
CAAACATTGGTTGCCCCTCT+AGG 0.429678 4_3:-68192333 None:intergenic
TATACACATGCAATATCTTC+TGG 0.438927 4_3:-68196384 None:intergenic
ATGTCCCTTGCGGGAACTGC+CGG 0.445439 4_3:+68194683 Msa0658160:CDS
TGTGAAAAGGGCTGTGTGAT+TGG 0.446871 4_3:+68196515 Msa0658160:three_prime_UTR
GAGAGGACGAGTTGTGAAAA+GGG 0.449859 4_3:+68196503 Msa0658160:three_prime_UTR
TTCGTTACTGAATGTTGTAC+AGG 0.453491 4_3:+68196699 Msa0658160:three_prime_UTR
CCACTTGAATCAACAGACAT+TGG 0.458263 4_3:-68196142 None:intergenic
CAGGTGAGCAATGTTGTTGT+TGG 0.459951 4_3:+68196287 Msa0658160:intron
GTGTGATATAATAACAGATC+TGG 0.464583 4_3:+68196665 Msa0658160:three_prime_UTR
TTACGAGTGATTTGTGAAAA+GGG 0.470194 4_3:+68196745 Msa0658160:three_prime_UTR
TGATCTGTTAGGACCGTGTA+TGG 0.475377 4_3:+68196624 Msa0658160:three_prime_UTR
AAGTCGCAAGGAAGGAAGAA+AGG 0.479378 4_3:+68191567 Msa0658160:five_prime_UTR
GGAGAGGACGAGTTGTGAAA+AGG 0.487910 4_3:+68196502 Msa0658160:three_prime_UTR
TGGTGATTAATAGCATAGAA+AGG 0.493805 4_3:+68196009 Msa0658160:intron
CGTTTGAATGAAACTATTGG+AGG 0.497853 4_3:-68196424 None:intergenic
CTAAATTATTATCAAATCAA+AGG 0.500333 4_3:-68191414 None:intergenic
ATAAAATCACAGGCTTATCA+AGG 0.508700 4_3:-68196598 None:intergenic
ATATACTGTACCTTCTATCA+TGG 0.516123 4_3:-68196337 None:intergenic
AAACATTGGTTGCCCCTCTA+GGG 0.521552 4_3:-68192332 None:intergenic
AGAAGAAGAAGTCGCAAGGA+AGG 0.523100 4_3:+68191559 Msa0658160:five_prime_UTR
GCATGTTGCTTTACCCTAGA+GGG 0.526229 4_3:+68192319 Msa0658160:CDS
TGAAAAGGGTGATAATATCC+AGG 0.532173 4_3:+68196759 Msa0658160:three_prime_UTR
TTGACTGAAGGAGCTCCATA+AGG 0.536562 4_3:-68194721 None:intergenic
GAACACGGTCCTGGTGCCGC+AGG 0.537469 4_3:+68191827 Msa0658160:five_prime_UTR
AAGGATACATGAGTGTTGTC+CGG 0.538194 4_3:-68194702 None:intergenic
TCCAAACATTCAAAGCCTCC+TGG 0.539567 4_3:-68196783 None:intergenic
AAGGAAAAGAAATATGAAAG+AGG 0.541246 4_3:-68191701 None:intergenic
AGTCGCAAGGAAGGAAGAAA+GGG 0.544782 4_3:+68191568 Msa0658160:five_prime_UTR
GTTATTTAGTAAGTTGTAGA+CGG 0.549219 4_3:+68196555 Msa0658160:three_prime_UTR
AGGAAAAGAAATATGAAAGA+GGG 0.549490 4_3:-68191700 None:intergenic
GTTGTCCGGCAGTTCCCGCA+AGG 0.550249 4_3:-68194688 None:intergenic
CTTGTCGCAGAACACGGTCC+TGG 0.553516 4_3:+68191818 Msa0658160:five_prime_UTR
TAGCATAGAAAGGATGATGT+TGG 0.554099 4_3:+68196019 Msa0658160:intron
CTAACAATACCTGCGGCACC+AGG 0.557233 4_3:-68191836 None:intergenic
AACTTGTGTGTAATGGTTGT+AGG 0.557278 4_3:+68192295 Msa0658160:CDS
GCAGTTCCCGCAAGGGACAT+GGG 0.560859 4_3:-68194680 None:intergenic
CAGAGTCAACTTGTGTGTAA+TGG 0.563559 4_3:+68192288 Msa0658160:CDS
CAGATCATCGATAAAATCAC+AGG 0.563654 4_3:-68196608 None:intergenic
AAGATGAAGATGAAGTAGAG+AGG 0.567265 4_3:+68191500 Msa0658160:five_prime_UTR
GATATGTCTCAACTATATTG+TGG 0.572327 4_3:+68192553 Msa0658160:CDS
CCAATGTCTGTTGATTCAAG+TGG 0.574429 4_3:+68196142 Msa0658160:CDS
AAGAAGAAAACGTTGATATG+GGG 0.575509 4_3:-68191727 None:intergenic
GAGATTGGGGCATTGACTGT+AGG 0.580252 4_3:-68196093 None:intergenic
GAATCGCTTGTCGCAGAACA+CGG 0.581082 4_3:+68191812 Msa0658160:five_prime_UTR
ACTGTTTGGCTCTGAGATTG+GGG 0.587463 4_3:-68196106 None:intergenic
AACTATATTGTGGAGGCTGT+AGG 0.590469 4_3:+68192563 Msa0658160:CDS
TTGTCCGGCAGTTCCCGCAA+GGG 0.594632 4_3:-68194687 None:intergenic
ATTACCTCTGTTCCTCCACC+TGG 0.595203 4_3:+68192375 Msa0658160:CDS
GAAGTAGAGAGGAAGATGCG+AGG 0.596498 4_3:+68191511 Msa0658160:five_prime_UTR
CATACTGTAAACCTTGCTCC+AGG 0.599148 4_3:+68192637 Msa0658160:CDS
AATATACATTACCTGGAGCA+AGG 0.599284 4_3:-68192648 None:intergenic
CAATGTCTGTTGATTCAAGT+GGG 0.600952 4_3:+68196143 Msa0658160:CDS
GGGTGATAATATCCAGGACC+AGG 0.601001 4_3:+68196765 Msa0658160:three_prime_UTR
CGTTGGAGCTTACCAGGTGG+AGG 0.603157 4_3:-68192387 None:intergenic
GCACAATGCACAACAAACAT+TGG 0.623040 4_3:-68192346 None:intergenic
AGCATGTTGCTTTACCCTAG+AGG 0.627744 4_3:+68192318 Msa0658160:CDS
CAAACAGCACATTTGACTGA+AGG 0.639168 4_3:-68194733 None:intergenic
ATGTCTCAACTATATTGTGG+AGG 0.644670 4_3:+68192556 Msa0658160:CDS
CAAGTAGCCCATGTCCCTTG+CGG 0.646539 4_3:+68194673 Msa0658160:CDS
CATGTTGCTTTACCCTAGAG+GGG 0.647362 4_3:+68192320 Msa0658160:CDS
CTTACCAGGTGGAGGAACAG+AGG 0.665101 4_3:-68192379 None:intergenic
TGATAATATCCAGGACCAGG+AGG 0.672230 4_3:+68196768 Msa0658160:three_prime_UTR
GTATGTATATGTATATGGAG+AGG 0.676077 4_3:+68196486 Msa0658160:three_prime_UTR
CCAATCTCAGAGCCAAACAG+TGG 0.689166 4_3:+68196108 Msa0658160:CDS
TTGTATCGAATATCCATACA+CGG 0.711052 4_3:-68196637 None:intergenic
ACATTGTTAATGTACACACG+CGG 0.795848 4_3:+68192586 Msa0658160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTAAAATGTTATAC+GGG + chr4_3:68193433-68193452 Msa0658160:intron 10.0%
!! TTAAAGAAAAAATAATACTT+TGG + chr4_3:68195685-68195704 Msa0658160:intron 10.0%
!! CTAAATTATTATCAAATCAA+AGG - chr4_3:68191417-68191436 None:intergenic 15.0%
!!! CTTTGATTTGATAATAATTT+AGG + chr4_3:68191415-68191434 Msa0658160:five_prime_UTR 15.0%
!! AAACAAAAAAACAAAAACAA+AGG - chr4_3:68191864-68191883 None:intergenic 15.0%
!!! TTTGTTTTATTATACGTTTT+GGG + chr4_3:68191915-68191934 Msa0658160:intron 15.0%
!!! ATCATTTTTTTGTTCTTATT+TGG + chr4_3:68191986-68192005 Msa0658160:intron 15.0%
!!! TTCAACAAGATTTTTTTTTT+AGG - chr4_3:68194109-68194128 None:intergenic 15.0%
!!! TTTTTTTCTAGTTTTGTTTT+TGG + chr4_3:68195989-68196008 Msa0658160:intron 15.0%
!! AGGATATGATAAAAAAAATG+TGG + chr4_3:68191435-68191454 Msa0658160:five_prime_UTR 20.0%
!!! GTTTGTTTTATTATACGTTT+TGG + chr4_3:68191914-68191933 Msa0658160:intron 20.0%
!!! CTAAAACAGTTATGTTATTT+AGG + chr4_3:68193198-68193217 Msa0658160:intron 20.0%
!! GAAATTGAAGATTATTACAA+TGG - chr4_3:68193258-68193277 None:intergenic 20.0%
!!! TAGCTAATGTTTTGTAAATT+TGG + chr4_3:68193857-68193876 Msa0658160:intron 20.0%
!!! TTTTTTTTAGGAAGAATTGA+TGG - chr4_3:68194097-68194116 None:intergenic 20.0%
!! AACATGTAGTTGTTTATAAA+TGG - chr4_3:68194266-68194285 None:intergenic 20.0%
!!! ATATTTGCATAATCATTTTC+TGG + chr4_3:68194329-68194348 Msa0658160:intron 20.0%
!!! TATTTGCATAATCATTTTCT+GGG + chr4_3:68194330-68194349 Msa0658160:intron 20.0%
!! AGTGTTTCATTATTTAATCT+TGG + chr4_3:68194421-68194440 Msa0658160:intron 20.0%
!! TGTAAAATGGAATTCTTTAT+TGG - chr4_3:68194576-68194595 None:intergenic 20.0%
!! CTTGAAATTTGATTAGAAAA+AGG + chr4_3:68194943-68194962 Msa0658160:intron 20.0%
!!! TTTAATCTGCGTTTTTAAAT+AGG + chr4_3:68195196-68195215 Msa0658160:intron 20.0%
!!! TCACACATAGATTATTTTTT+TGG + chr4_3:68195226-68195245 Msa0658160:intron 20.0%
!! AATAGTTGATTAGGATAATT+TGG - chr4_3:68195652-68195671 None:intergenic 20.0%
!! AAATTATCCTAATCAACTAT+TGG + chr4_3:68195651-68195670 Msa0658160:intron 20.0%
!! TGTAACATAGTATTAATTGA+AGG + chr4_3:68195714-68195733 Msa0658160:intron 20.0%
!! GTAACATAGTATTAATTGAA+GGG + chr4_3:68195715-68195734 Msa0658160:intron 20.0%
!!! CATTTTGAAACAGATTTTTT+TGG + chr4_3:68195789-68195808 Msa0658160:intron 20.0%
!!! AGACTTGTTTAAAATGAATT+TGG + chr4_3:68196257-68196276 Msa0658160:intron 20.0%
!! TATCAGTATGTATATGTATA+TGG + chr4_3:68196481-68196500 Msa0658160:three_prime_UTR 20.0%
! ATGCGAGGAAAATAAAATAT+TGG + chr4_3:68191526-68191545 Msa0658160:five_prime_UTR 25.0%
! GATTGAATTGAATGAGAATT+GGG - chr4_3:68191664-68191683 None:intergenic 25.0%
! TGATTGAATTGAATGAGAAT+TGG - chr4_3:68191665-68191684 None:intergenic 25.0%
! AGGAAAAGAAATATGAAAGA+GGG - chr4_3:68191703-68191722 None:intergenic 25.0%
! AAGGAAAAGAAATATGAAAG+AGG - chr4_3:68191704-68191723 None:intergenic 25.0%
! TAAGAAGAAAACGTTGATAT+GGG - chr4_3:68191731-68191750 None:intergenic 25.0%
! TTAAGAAGAAAACGTTGATA+TGG - chr4_3:68191732-68191751 None:intergenic 25.0%
!!! TTTGTTCCATTTTTTTCTTC+TGG + chr4_3:68191891-68191910 Msa0658160:intron 25.0%
!!! TTGTTCCATTTTTTTCTTCT+GGG + chr4_3:68191892-68191911 Msa0658160:intron 25.0%
!!! TTTTGGGAAATTCAACATTT+TGG + chr4_3:68191931-68191950 Msa0658160:intron 25.0%
!! TTTGGGAAATTCAACATTTT+GGG + chr4_3:68191932-68191951 Msa0658160:intron 25.0%
! ATTAGGCAAAACTTCAAATT+CGG - chr4_3:68192035-68192054 None:intergenic 25.0%
! CAAATTCCAACTACTATATT+AGG - chr4_3:68192052-68192071 None:intergenic 25.0%
! CTAATATAGTAGTTGGAATT+TGG + chr4_3:68192050-68192069 Msa0658160:intron 25.0%
! AAAAGCAAATATACATTACC+TGG - chr4_3:68192658-68192677 None:intergenic 25.0%
!!! TGTATGTTTTGAACTGTATT+TGG + chr4_3:68192909-68192928 Msa0658160:intron 25.0%
! ATTATTACAATGGAACACTA+GGG - chr4_3:68193248-68193267 None:intergenic 25.0%
! TTGCTAAATAAGATTGCTAA+TGG + chr4_3:68193287-68193306 Msa0658160:intron 25.0%
!! AGTCACTGAATAATTTCTTT+TGG + chr4_3:68193323-68193342 Msa0658160:intron 25.0%
! TTGAACAAAGCAAGAAAATA+AGG - chr4_3:68193399-68193418 None:intergenic 25.0%
! GAGATTTATTTACGCTAAAA+AGG + chr4_3:68193490-68193509 Msa0658160:intron 25.0%
! TTTATTTACGCTAAAAAGGA+TGG + chr4_3:68193494-68193513 Msa0658160:intron 25.0%
! TTATTTACGCTAAAAAGGAT+GGG + chr4_3:68193495-68193514 Msa0658160:intron 25.0%
! TGAGAACATTAGAGTTATAA+TGG + chr4_3:68193543-68193562 Msa0658160:intron 25.0%
! AATTTGGAGACAAAATTTCT+TGG + chr4_3:68193873-68193892 Msa0658160:intron 25.0%
! CAATAAAAATAATGACAACC+TGG + chr4_3:68193906-68193925 Msa0658160:intron 25.0%
! TAAACAACTACATGTTAATC+TGG + chr4_3:68194270-68194289 Msa0658160:intron 25.0%
! AAACAACTACATGTTAATCT+GGG + chr4_3:68194271-68194290 Msa0658160:intron 25.0%
! GAGATTTGAAGAGTAATAAA+AGG - chr4_3:68194474-68194493 None:intergenic 25.0%
! GAATAAATCACACTGTAAAA+TGG - chr4_3:68194589-68194608 None:intergenic 25.0%
!! TCTACAGAATTTTGTTAATC+TGG + chr4_3:68194789-68194808 Msa0658160:intron 25.0%
!! CTACAGAATTTTGTTAATCT+GGG + chr4_3:68194790-68194809 Msa0658160:intron 25.0%
! TAGTCTTTAATTCTTGTATG+TGG - chr4_3:68194886-68194905 None:intergenic 25.0%
!!! CCAATCTTATTCTTTTAAGT+TGG - chr4_3:68195375-68195394 None:intergenic 25.0%
! CCAACTTAAAAGAATAAGAT+TGG + chr4_3:68195372-68195391 Msa0658160:intron 25.0%
! AACATTGAACACATCTTAAA+GGG + chr4_3:68195452-68195471 Msa0658160:intron 25.0%
! AAACAAACCAATAGTTGATT+AGG - chr4_3:68195661-68195680 None:intergenic 25.0%
!!! TTCAAAATGAATGTCACTTT+CGG - chr4_3:68195778-68195797 None:intergenic 25.0%
! ATTCGTTTGAATGAAACTAT+TGG - chr4_3:68196430-68196449 None:intergenic 25.0%
! GTTATTTAGTAAGTTGTAGA+CGG + chr4_3:68196555-68196574 Msa0658160:three_prime_UTR 25.0%
ACACTCTTTCGAAATTTCTT+TGG - chr4_3:68191477-68191496 None:intergenic 30.0%
TGGGAATAATTTGATTGTGT+TGG - chr4_3:68191645-68191664 None:intergenic 30.0%
AAGAAGAAAACGTTGATATG+GGG - chr4_3:68191730-68191749 None:intergenic 30.0%
ACAAACCCAGAAGAAAAAAA+TGG - chr4_3:68191900-68191919 None:intergenic 30.0%
TTAGGCAAAACTTCAAATTC+GGG - chr4_3:68192034-68192053 None:intergenic 30.0%
! GTTTTGCCTAATATAGTAGT+TGG + chr4_3:68192043-68192062 Msa0658160:intron 30.0%
! ATTGAAACAAAAAGTGTGTC+AGG - chr4_3:68192131-68192150 None:intergenic 30.0%
!! TTTGGTTGGTTAAGGTTTTA+TGG + chr4_3:68192234-68192253 Msa0658160:intron 30.0%
GATGTACGAACATTACATAT+AGG - chr4_3:68192444-68192463 None:intergenic 30.0%
!! TGAGACTCTAAGTTGATATT+AGG + chr4_3:68192498-68192517 Msa0658160:intron 30.0%
GATATGTCTCAACTATATTG+TGG + chr4_3:68192553-68192572 Msa0658160:CDS 30.0%
GTGGTTTAGTATTAGTTAAG+CGG + chr4_3:68192705-68192724 Msa0658160:intron 30.0%
TGGTTTAGTATTAGTTAAGC+GGG + chr4_3:68192706-68192725 Msa0658160:intron 30.0%
TTGAACTGTATTTGGATAAG+AGG + chr4_3:68192917-68192936 Msa0658160:intron 30.0%
ATGATGTTCATTTGTATGCA+TGG + chr4_3:68193017-68193036 Msa0658160:intron 30.0%
!! TTACTTTGATTCCACTTTTG+AGG + chr4_3:68193072-68193091 Msa0658160:intron 30.0%
TGTGAGTGGTTTATTTATGT+TGG + chr4_3:68193169-68193188 Msa0658160:intron 30.0%
TGGTTTATTTATGTTGGTCA+CGG + chr4_3:68193175-68193194 Msa0658160:intron 30.0%
TTAGGTGTTCTTACTTGTAA+TGG + chr4_3:68193216-68193235 Msa0658160:intron 30.0%
GATTATTACAATGGAACACT+AGG - chr4_3:68193249-68193268 None:intergenic 30.0%
AATCAAAGAAGACTGAATCA+GGG - chr4_3:68193360-68193379 None:intergenic 30.0%
TTAGAGTTATAATGGCTAAG+TGG + chr4_3:68193551-68193570 Msa0658160:intron 30.0%
TTATAATGGCTAAGTGGTTA+TGG + chr4_3:68193557-68193576 Msa0658160:intron 30.0%
! CATTTTAAGCTTTGCAGAAA+AGG - chr4_3:68193597-68193616 None:intergenic 30.0%
! GCTAAAATGCTTTTCCAAAA+AGG + chr4_3:68193698-68193717 Msa0658160:intron 30.0%
! AAAATGCTTTTCCAAAAAGG+TGG + chr4_3:68193701-68193720 Msa0658160:intron 30.0%
! TTCTCGTTTAAAGTCTACAA+AGG - chr4_3:68193834-68193853 None:intergenic 30.0%
!! TTTTTAGGAAGAATTGATGG+AGG - chr4_3:68194094-68194113 None:intergenic 30.0%
AAGTGAAGAATCAACACATT+CGG - chr4_3:68194136-68194155 None:intergenic 30.0%
! TACATGTTAATCTGGGATTA+AGG + chr4_3:68194278-68194297 Msa0658160:intron 30.0%
AAATAATGAAACACTGACCT+TGG - chr4_3:68194416-68194435 None:intergenic 30.0%
TCTTCAAATCTCTATTGTAG+AGG + chr4_3:68194482-68194501 Msa0658160:intron 30.0%
TAAAGACTAGTATGAGAGAA+AGG + chr4_3:68194897-68194916 Msa0658160:intron 30.0%
!! GATTCAGTTAATTTGTAGGA+AGG - chr4_3:68195073-68195092 None:intergenic 30.0%
TGGTTATAGTAGTAAAGGAA+GGG - chr4_3:68195096-68195115 None:intergenic 30.0%
TTAGGTGGTTATAGTAGTAA+AGG - chr4_3:68195101-68195120 None:intergenic 30.0%
AAGTAGCTACAGAATTAGTT+AGG - chr4_3:68195119-68195138 None:intergenic 30.0%
! TCTGCGTTTTTAAATAGGAA+AGG + chr4_3:68195201-68195220 Msa0658160:intron 30.0%
CAAGCTTATCAAGAATAAGT+AGG - chr4_3:68195311-68195330 None:intergenic 30.0%
AAGAATAAGATTGGAGTCTA+AGG + chr4_3:68195381-68195400 Msa0658160:intron 30.0%
CAACATTGAACACATCTTAA+AGG + chr4_3:68195451-68195470 Msa0658160:intron 30.0%
CAGTATGAAAAAATCAACTC+AGG - chr4_3:68195859-68195878 None:intergenic 30.0%
TGGTGATTAATAGCATAGAA+AGG + chr4_3:68196009-68196028 Msa0658160:intron 30.0%
ATATACTGTACCTTCTATCA+TGG - chr4_3:68196340-68196359 None:intergenic 30.0%
TATACACATGCAATATCTTC+TGG - chr4_3:68196387-68196406 None:intergenic 30.0%
GTATGTATATGTATATGGAG+AGG + chr4_3:68196486-68196505 Msa0658160:three_prime_UTR 30.0%
ATAAAATCACAGGCTTATCA+AGG - chr4_3:68196601-68196620 None:intergenic 30.0%
! GATTTTATCGATGATCTGTT+AGG + chr4_3:68196613-68196632 Msa0658160:three_prime_UTR 30.0%
TTGTATCGAATATCCATACA+CGG - chr4_3:68196640-68196659 None:intergenic 30.0%
GTGTGATATAATAACAGATC+TGG + chr4_3:68196665-68196684 Msa0658160:three_prime_UTR 30.0%
! TTTACGAGTGATTTGTGAAA+AGG + chr4_3:68196744-68196763 Msa0658160:three_prime_UTR 30.0%
! TTACGAGTGATTTGTGAAAA+GGG + chr4_3:68196745-68196764 Msa0658160:three_prime_UTR 30.0%
AAGATGAAGATGAAGTAGAG+AGG + chr4_3:68191500-68191519 Msa0658160:five_prime_UTR 35.0%
AAACGTTGATATGGGGATAA+AGG - chr4_3:68191723-68191742 None:intergenic 35.0%
AAAGGATCTAACAATACCTG+CGG - chr4_3:68191846-68191865 None:intergenic 35.0%
!! AATCTTGGTTTGGTTGGTTA+AGG + chr4_3:68192226-68192245 Msa0658160:intron 35.0%
!! TGGTTAAGGTTTTATGGTGA+TGG + chr4_3:68192240-68192259 Msa0658160:intron 35.0%
AACTTGTGTGTAATGGTTGT+AGG + chr4_3:68192295-68192314 Msa0658160:CDS 35.0%
TTTAATAACGAGAACAGCGT+TGG - chr4_3:68192407-68192426 None:intergenic 35.0%
ATGTCTCAACTATATTGTGG+AGG + chr4_3:68192556-68192575 Msa0658160:CDS 35.0%
ACATTGTTAATGTACACACG+CGG + chr4_3:68192586-68192605 Msa0658160:CDS 35.0%
AATATACATTACCTGGAGCA+AGG - chr4_3:68192651-68192670 None:intergenic 35.0%
TTTAGTATTAGTTAAGCGGG+TGG + chr4_3:68192709-68192728 Msa0658160:intron 35.0%
CATTGCTTGATCATGGAATA+TGG + chr4_3:68192795-68192814 Msa0658160:intron 35.0%
TGTATTTGGATAAGAGGCAA+TGG + chr4_3:68192923-68192942 Msa0658160:intron 35.0%
! TAGTGAAAGGTTTGGTTGTT+TGG + chr4_3:68192954-68192973 Msa0658160:intron 35.0%
CATCATAATCTACAAACTGC+AGG - chr4_3:68193003-68193022 None:intergenic 35.0%
TTTATGAGCCTTGGTAAACA+CGG + chr4_3:68193109-68193128 Msa0658160:intron 35.0%
CACAACATCAACTTGATCAT+TGG - chr4_3:68193146-68193165 None:intergenic 35.0%
GAATCAAAGAAGACTGAATC+AGG - chr4_3:68193361-68193380 None:intergenic 35.0%
TAAGCTTTGCAGAAAAGGTT+AGG - chr4_3:68193592-68193611 None:intergenic 35.0%
TGTGAAAGGTGAATGTATGT+TGG + chr4_3:68193742-68193761 Msa0658160:intron 35.0%
AATAGAATCAGTTCCTTGAG+TGG - chr4_3:68194057-68194076 None:intergenic 35.0%
!! CATCTCTTTGAAATGAAGTC+TGG + chr4_3:68194168-68194187 Msa0658160:intron 35.0%
TATTGCTTGCATTTAGTCCA+AGG + chr4_3:68194396-68194415 Msa0658160:intron 35.0%
ATAGTACTCATCAAGACGAA+CGG - chr4_3:68194450-68194469 None:intergenic 35.0%
ACAACACTCATGTATCCTTA+TGG + chr4_3:68194706-68194725 Msa0658160:CDS 35.0%
TGATTAGAAAAAGGATCCCA+AGG + chr4_3:68194952-68194971 Msa0658160:intron 35.0%
GATTAGAAAAAGGATCCCAA+GGG + chr4_3:68194953-68194972 Msa0658160:intron 35.0%
CAGCACCTCAGTTATAAAAA+AGG - chr4_3:68195002-68195021 None:intergenic 35.0%
!! TTTCTGAACTGTTAGCTTTG+GGG - chr4_3:68195032-68195051 None:intergenic 35.0%
!! CTTTCTGAACTGTTAGCTTT+GGG - chr4_3:68195033-68195052 None:intergenic 35.0%
! TCTTTCTGAACTGTTAGCTT+TGG - chr4_3:68195034-68195053 None:intergenic 35.0%
!! TCAGTTAATTTGTAGGAAGG+CGG - chr4_3:68195070-68195089 None:intergenic 35.0%
!! AGGGGATTCAGTTAATTTGT+AGG - chr4_3:68195077-68195096 None:intergenic 35.0%
GGTTATAGTAGTAAAGGAAG+GGG - chr4_3:68195095-68195114 None:intergenic 35.0%
GTGGTTATAGTAGTAAAGGA+AGG - chr4_3:68195097-68195116 None:intergenic 35.0%
TAGCTACAGAATTAGTTAGG+TGG - chr4_3:68195116-68195135 None:intergenic 35.0%
GGAGATACATTTAAGTCTTC+TGG + chr4_3:68195247-68195266 Msa0658160:intron 35.0%
ATAACAGGCATGTGATAACT+TGG - chr4_3:68195339-68195358 None:intergenic 35.0%
ACATGCCTGTTATCAGATAT+TGG + chr4_3:68195346-68195365 Msa0658160:intron 35.0%
CATGCCTGTTATCAGATATT+GGG + chr4_3:68195347-68195366 Msa0658160:intron 35.0%
ATGAAATTTCATTCCCGTTG+AGG + chr4_3:68195500-68195519 Msa0658160:intron 35.0%
TACAACAGACAAAAGCTCAA+AGG - chr4_3:68195526-68195545 None:intergenic 35.0%
! GAGCTTTTGTCTGTTGTAAA+TGG + chr4_3:68195528-68195547 Msa0658160:intron 35.0%
!!! GACACTCATTTTGAAATGGA+GGG - chr4_3:68195565-68195584 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+TGG - chr4_3:68195815-68195834 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG - chr4_3:68195595-68195614 None:intergenic 35.0%
ATTGCACACAGATTAAGGAA+TGG + chr4_3:68195595-68195614 Msa0658160:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr4_3:68195815-68195834 Msa0658160:intron 35.0%
ATTGGACATCTACAAAAGAC+AGG - chr4_3:68195885-68195904 None:intergenic 35.0%
! TGTCTTTTGTAGATGTCCAA+TGG + chr4_3:68195884-68195903 Msa0658160:intron 35.0%
! TTTTGTAGATGTCCAATGGA+AGG + chr4_3:68195888-68195907 Msa0658160:intron 35.0%
AACGTTACCTTCTACTTCAA+CGG + chr4_3:68195955-68195974 Msa0658160:intron 35.0%
AAACATACCGTTGAAGTAGA+AGG - chr4_3:68195965-68195984 None:intergenic 35.0%
TAGCATAGAAAGGATGATGT+TGG + chr4_3:68196019-68196038 Msa0658160:intron 35.0%
! GATTTTCTACAACCACTGTT+TGG - chr4_3:68196123-68196142 None:intergenic 35.0%
!! CAATGTCTGTTGATTCAAGT+GGG + chr4_3:68196143-68196162 Msa0658160:CDS 35.0%
!! TGTTGATTCAAGTGGGAAAT+TGG + chr4_3:68196150-68196169 Msa0658160:CDS 35.0%
AAATGAATTTGGCATGTCAC+AGG + chr4_3:68196268-68196287 Msa0658160:intron 35.0%
AATAATGCAGCCATGATAGA+AGG + chr4_3:68196327-68196346 Msa0658160:exon 35.0%
CGTTTGAATGAAACTATTGG+AGG - chr4_3:68196427-68196446 None:intergenic 35.0%
!!! ATCCTTCCTTTTTCGATGTA+AGG + chr4_3:68196448-68196467 Msa0658160:three_prime_UTR 35.0%
!!! TCCTTCCTTTTTCGATGTAA+GGG + chr4_3:68196449-68196468 Msa0658160:three_prime_UTR 35.0%
TCTAACCCTTACATCGAAAA+AGG - chr4_3:68196457-68196476 None:intergenic 35.0%
CAGATCATCGATAAAATCAC+AGG - chr4_3:68196611-68196630 None:intergenic 35.0%
TTCGTTACTGAATGTTGTAC+AGG + chr4_3:68196699-68196718 Msa0658160:three_prime_UTR 35.0%
TGAAAAGGGTGATAATATCC+AGG + chr4_3:68196759-68196778 Msa0658160:three_prime_UTR 35.0%
AAGAAGAAGAAGAAGTCGCA+AGG + chr4_3:68191555-68191574 Msa0658160:five_prime_UTR 40.0%
TGTGTGTGAGAATCTTGGTT+TGG + chr4_3:68192216-68192235 Msa0658160:intron 40.0%
!! TGTGAGAATCTTGGTTTGGT+TGG + chr4_3:68192220-68192239 Msa0658160:intron 40.0%
CAGAGTCAACTTGTGTGTAA+TGG + chr4_3:68192288-68192307 Msa0658160:CDS 40.0%
GCACAATGCACAACAAACAT+TGG - chr4_3:68192349-68192368 None:intergenic 40.0%
AACTATATTGTGGAGGCTGT+AGG + chr4_3:68192563-68192582 Msa0658160:CDS 40.0%
TTTGCTGCATTGCTTGATCA+TGG + chr4_3:68192788-68192807 Msa0658160:intron 40.0%
TAATCCGTACACGAGGATTT+CGG - chr4_3:68192839-68192858 None:intergenic 40.0%
CAGTTCAAAACATACACTCG+AGG - chr4_3:68192905-68192924 None:intergenic 40.0%
TTTGGATAAGAGGCAATGGA+AGG + chr4_3:68192927-68192946 Msa0658160:intron 40.0%
TTGGATAAGAGGCAATGGAA+GGG + chr4_3:68192928-68192947 Msa0658160:intron 40.0%
ACGACAAATGACCTCAAAAG+TGG - chr4_3:68193086-68193105 None:intergenic 40.0%
!! TGTCGTGTTTTTATGAGCCT+TGG + chr4_3:68193100-68193119 Msa0658160:intron 40.0%
! TTGATGTTGTGACTTGTGAG+TGG + chr4_3:68193155-68193174 Msa0658160:intron 40.0%
! TCTTATTTAGCAACAGCGTC+TGG - chr4_3:68193280-68193299 None:intergenic 40.0%
! TATACGGGATTCCTTTTGCA+TGG + chr4_3:68193448-68193467 Msa0658160:intron 40.0%
! ATACGGGATTCCTTTTGCAT+GGG + chr4_3:68193449-68193468 Msa0658160:intron 40.0%
TAGCGTAAATAAATCTCCCG+AGG - chr4_3:68193487-68193506 None:intergenic 40.0%
GAAGCTATTTACTGCACGAT+TGG + chr4_3:68193616-68193635 Msa0658160:intron 40.0%
ATTTACTGCACGATTGGTGT+TGG + chr4_3:68193622-68193641 Msa0658160:intron 40.0%
! TTTACTGCACGATTGGTGTT+GGG + chr4_3:68193623-68193642 Msa0658160:intron 40.0%
TCCAATAACTGGAATGAGGT+TGG + chr4_3:68193670-68193689 Msa0658160:intron 40.0%
CCAATAACTGGAATGAGGTT+GGG + chr4_3:68193671-68193690 Msa0658160:intron 40.0%
CATTCACCTTTCACAAGCAT+AGG - chr4_3:68193737-68193756 None:intergenic 40.0%
! AGACGGGATTTTATAGTACC+AGG - chr4_3:68193927-68193946 None:intergenic 40.0%
AAAATCCCGTCTTATGTTCC+CGG + chr4_3:68193935-68193954 Msa0658160:intron 40.0%
CATTTCAAAGAGATGACGTG+AGG - chr4_3:68194163-68194182 None:intergenic 40.0%
TTTGCACACTACGAGATGTT+TGG + chr4_3:68194526-68194545 Msa0658160:intron 40.0%
! AAGGATACATGAGTGTTGTC+CGG - chr4_3:68194705-68194724 None:intergenic 40.0%
CAAACAGCACATTTGACTGA+AGG - chr4_3:68194736-68194755 None:intergenic 40.0%
!!! GGCAGCCTTTTTTATAACTG+AGG + chr4_3:68194994-68195013 Msa0658160:intron 40.0%
!! TTAATTTGTAGGAAGGCGGA+AGG - chr4_3:68195066-68195085 None:intergenic 40.0%
GGATCCCAATATCTGATAAC+AGG - chr4_3:68195354-68195373 None:intergenic 40.0%
TTTCCCTAGGGCATATAAGT+CGG - chr4_3:68195416-68195435 None:intergenic 40.0%
TATATGCCCTAGGGAAACTT+TGG + chr4_3:68195419-68195438 Msa0658160:intron 40.0%
GAGAATCCAAAGTTTCCCTA+GGG - chr4_3:68195428-68195447 None:intergenic 40.0%
TGAGAATCCAAAGTTTCCCT+AGG - chr4_3:68195429-68195448 None:intergenic 40.0%
!!! CGACACTCATTTTGAAATGG+AGG - chr4_3:68195566-68195585 None:intergenic 40.0%
AGCCAATTGCACACAGATTA+AGG + chr4_3:68195590-68195609 Msa0658160:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4_3:68195819-68195838 Msa0658160:intron 40.0%
CCACTTGAATCAACAGACAT+TGG - chr4_3:68196145-68196164 None:intergenic 40.0%
!! CCAATGTCTGTTGATTCAAG+TGG + chr4_3:68196142-68196161 Msa0658160:CDS 40.0%
ACCCTTACATCGAAAAAGGA+AGG - chr4_3:68196453-68196472 None:intergenic 40.0%
AGAAGAAGAAGTCGCAAGGA+AGG + chr4_3:68191559-68191578 Msa0658160:five_prime_UTR 45.0%
AAGTCGCAAGGAAGGAAGAA+AGG + chr4_3:68191567-68191586 Msa0658160:five_prime_UTR 45.0%
AGTCGCAAGGAAGGAAGAAA+GGG + chr4_3:68191568-68191587 Msa0658160:five_prime_UTR 45.0%
GTGTGTGTGTGTGAGAATCT+TGG + chr4_3:68192211-68192230 Msa0658160:intron 45.0%
!! AGCATGTTGCTTTACCCTAG+AGG + chr4_3:68192318-68192337 Msa0658160:CDS 45.0%
!! GCATGTTGCTTTACCCTAGA+GGG + chr4_3:68192319-68192338 Msa0658160:CDS 45.0%
!! CATGTTGCTTTACCCTAGAG+GGG + chr4_3:68192320-68192339 Msa0658160:CDS 45.0%
! AAACATTGGTTGCCCCTCTA+GGG - chr4_3:68192335-68192354 None:intergenic 45.0%
CATACTGTAAACCTTGCTCC+AGG + chr4_3:68192637-68192656 Msa0658160:CDS 45.0%
GCTTGACAGATGAAGCTTAG+TGG + chr4_3:68192686-68192705 Msa0658160:intron 45.0%
TAGTTAAGCGGGTGGCATAT+TGG + chr4_3:68192717-68192736 Msa0658160:intron 45.0%
! GATTACCAGGGGGTACATTA+AGG + chr4_3:68192854-68192873 Msa0658160:intron 45.0%
AATGACCTTAATGTACCCCC+TGG - chr4_3:68192862-68192881 None:intergenic 45.0%
TGGATAAGAGGCAATGGAAG+GGG + chr4_3:68192929-68192948 Msa0658160:intron 45.0%
! AATGGAAGGGGGTTAGTGAA+AGG + chr4_3:68192941-68192960 Msa0658160:intron 45.0%
! AAGGGGGTTAGTGAAAGGTT+TGG + chr4_3:68192946-68192965 Msa0658160:intron 45.0%
ACAATGGAACACTAGGGAAG+AGG - chr4_3:68193242-68193261 None:intergenic 45.0%
! TACGGGATTCCTTTTGCATG+GGG + chr4_3:68193450-68193469 Msa0658160:intron 45.0%
AAAGGATGGGTGCTTAGTCT+TGG + chr4_3:68193508-68193527 Msa0658160:intron 45.0%
!! GGTGCTTAGTCTTGGTAAGT+TGG + chr4_3:68193516-68193535 Msa0658160:intron 45.0%
TTCCAGTTATTGGAGCCAGT+GGG - chr4_3:68193664-68193683 None:intergenic 45.0%
ATTCCAGTTATTGGAGCCAG+TGG - chr4_3:68193665-68193684 None:intergenic 45.0%
TGGCTCCAATAACTGGAATG+AGG + chr4_3:68193666-68193685 Msa0658160:intron 45.0%
CCCAACCTCATTCCAGTTAT+TGG - chr4_3:68193674-68193693 None:intergenic 45.0%
GGTGAATGTATGTTGGAGAG+TGG + chr4_3:68193749-68193768 Msa0658160:intron 45.0%
AAATCCCGTCTTATGTTCCC+GGG + chr4_3:68193936-68193955 Msa0658160:intron 45.0%
ATCAGATTCCACACCACTCA+AGG + chr4_3:68194041-68194060 Msa0658160:intron 45.0%
AATCAGTTCCTTGAGTGGTG+TGG - chr4_3:68194052-68194071 None:intergenic 45.0%
TTGACTGAAGGAGCTCCATA+AGG - chr4_3:68194724-68194743 None:intergenic 45.0%
TGTTGAAGGGGAAAACCCTT+GGG - chr4_3:68194971-68194990 None:intergenic 45.0%
TTGTTGAAGGGGAAAACCCT+TGG - chr4_3:68194972-68194991 None:intergenic 45.0%
! AGGGTTTTCCCCTTCAACAA+AGG + chr4_3:68194972-68194991 Msa0658160:intron 45.0%
! GGGTTTTCCCCTTCAACAAA+GGG + chr4_3:68194973-68194992 Msa0658160:intron 45.0%
AAAGGCTGCCCTTTGTTGAA+GGG - chr4_3:68194984-68195003 None:intergenic 45.0%
AAAAGGCTGCCCTTTGTTGA+AGG - chr4_3:68194985-68195004 None:intergenic 45.0%
AAACCCGACTTATATGCCCT+AGG + chr4_3:68195409-68195428 Msa0658160:intron 45.0%
AACCCGACTTATATGCCCTA+GGG + chr4_3:68195410-68195429 Msa0658160:intron 45.0%
TTCCCTAGGGCATATAAGTC+GGG - chr4_3:68195415-68195434 None:intergenic 45.0%
AAAAGCTCAAAGGCCTCAAC+GGG - chr4_3:68195516-68195535 None:intergenic 45.0%
CAAAAGCTCAAAGGCCTCAA+CGG - chr4_3:68195517-68195536 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4_3:68195818-68195837 Msa0658160:intron 45.0%
AGGAATTGGAAGCCTTCCAT+TGG - chr4_3:68195903-68195922 None:intergenic 45.0%
AATGGAAGGCTTCCAATTCC+TGG + chr4_3:68195902-68195921 Msa0658160:intron 45.0%
TGAGGTCTATGACCAGGAAT+TGG - chr4_3:68195917-68195936 None:intergenic 45.0%
ATTCCTGGTCATAGACCTCA+CGG + chr4_3:68195917-68195936 Msa0658160:intron 45.0%
!! ACTGTTTGGCTCTGAGATTG+GGG - chr4_3:68196109-68196128 None:intergenic 45.0%
!! CACTGTTTGGCTCTGAGATT+GGG - chr4_3:68196110-68196129 None:intergenic 45.0%
AGAGAAGCAGTCAAATGCAG+TGG - chr4_3:68196217-68196236 None:intergenic 45.0%
CAGGTGAGCAATGTTGTTGT+TGG + chr4_3:68196287-68196306 Msa0658160:intron 45.0%
GAGAGGACGAGTTGTGAAAA+GGG + chr4_3:68196503-68196522 Msa0658160:three_prime_UTR 45.0%
TGTGAAAAGGGCTGTGTGAT+TGG + chr4_3:68196515-68196534 Msa0658160:three_prime_UTR 45.0%
TGATCTGTTAGGACCGTGTA+TGG + chr4_3:68196624-68196643 Msa0658160:three_prime_UTR 45.0%
TGATAATATCCAGGACCAGG+AGG + chr4_3:68196768-68196787 Msa0658160:three_prime_UTR 45.0%
!! TTAAAATAATCAAAAAAAAA+AGG + chr4_3:68191748-68191767 Msa0658160:five_prime_UTR 5.0%
!!! ATAAAATTTAAAATGTTATA+CGG + chr4_3:68193432-68193451 Msa0658160:intron 5.0%
GAAGTAGAGAGGAAGATGCG+AGG + chr4_3:68191511-68191530 Msa0658160:five_prime_UTR 50.0%
GAATCGCTTGTCGCAGAACA+CGG + chr4_3:68191812-68191831 Msa0658160:five_prime_UTR 50.0%
! CAAACATTGGTTGCCCCTCT+AGG - chr4_3:68192336-68192355 None:intergenic 50.0%
ATTACCTCTGTTCCTCCACC+TGG + chr4_3:68192375-68192394 Msa0658160:CDS 50.0%
! TACCGTACTGATGTTCCTGC+AGG + chr4_3:68192526-68192545 Msa0658160:intron 50.0%
! ACCGTACTGATGTTCCTGCA+GGG + chr4_3:68192527-68192546 Msa0658160:intron 50.0%
TCCCTGCAGGAACATCAGTA+CGG - chr4_3:68192531-68192550 None:intergenic 50.0%
TACTGATGTTCCTGCAGGGA+TGG + chr4_3:68192531-68192550 Msa0658160:intron 50.0%
TGAGACATATCCATCCCTGC+AGG - chr4_3:68192544-68192563 None:intergenic 50.0%
CGTTCCGAAATCCTCGTGTA+CGG + chr4_3:68192832-68192851 Msa0658160:intron 50.0%
! ATCCTCGTGTACGGATTACC+AGG + chr4_3:68192841-68192860 Msa0658160:intron 50.0%
! TCCTCGTGTACGGATTACCA+GGG + chr4_3:68192842-68192861 Msa0658160:intron 50.0%
GGATAAGAGGCAATGGAAGG+GGG + chr4_3:68192930-68192949 Msa0658160:intron 50.0%
GAGCCTTGGTAAACACGGTT+TGG + chr4_3:68193114-68193133 Msa0658160:intron 50.0%
CAGCCAAACCGTGTTTACCA+AGG - chr4_3:68193120-68193139 None:intergenic 50.0%
! ACGGGATTCCTTTTGCATGG+GGG + chr4_3:68193451-68193470 Msa0658160:intron 50.0%
CCAAATGACCCCCATGCAAA+AGG - chr4_3:68193462-68193481 None:intergenic 50.0%
! CCTTTTGCATGGGGGTCATT+TGG + chr4_3:68193459-68193478 Msa0658160:intron 50.0%
!! AACCCACTGGCTCCAATAAC+TGG + chr4_3:68193659-68193678 Msa0658160:intron 50.0%
TTTCCAAAAAGGTGGCAGCC+CGG + chr4_3:68193709-68193728 Msa0658160:intron 50.0%
CTTTCACAAGCATAGGAGCC+GGG - chr4_3:68193730-68193749 None:intergenic 50.0%
CCTTTCACAAGCATAGGAGC+CGG - chr4_3:68193731-68193750 None:intergenic 50.0%
TCTTCCCGGGAACATAAGAC+GGG - chr4_3:68193943-68193962 None:intergenic 50.0%
CTCTTCCCGGGAACATAAGA+CGG - chr4_3:68193944-68193963 None:intergenic 50.0%
AAATTTGTCCGCCTCTTCCC+GGG - chr4_3:68193956-68193975 None:intergenic 50.0%
CAAATTTGTCCGCCTCTTCC+CGG - chr4_3:68193957-68193976 None:intergenic 50.0%
AAGGCTGCCCTTTGTTGAAG+GGG - chr4_3:68194983-68195002 None:intergenic 50.0%
TTTGTAGGAAGGCGGAAGGA+GGG - chr4_3:68195062-68195081 None:intergenic 50.0%
ATTTGTAGGAAGGCGGAAGG+AGG - chr4_3:68195063-68195082 None:intergenic 50.0%
TAGGACGACGTAGACACGAA+TGG - chr4_3:68195292-68195311 None:intergenic 50.0%
GGCATATAAGTCGGGTTTGC+AGG - chr4_3:68195407-68195426 None:intergenic 50.0%
TTCCTGGTCATAGACCTCAC+GGG + chr4_3:68195918-68195937 Msa0658160:intron 50.0%
AGAAGGTAACGTTCCCGAGT+CGG - chr4_3:68195948-68195967 None:intergenic 50.0%
!! GAGATTGGGGCATTGACTGT+AGG - chr4_3:68196096-68196115 None:intergenic 50.0%
!! CCACTGTTTGGCTCTGAGAT+TGG - chr4_3:68196111-68196130 None:intergenic 50.0%
CCAATCTCAGAGCCAAACAG+TGG + chr4_3:68196108-68196127 Msa0658160:CDS 50.0%
GGAGAGGACGAGTTGTGAAA+AGG + chr4_3:68196502-68196521 Msa0658160:three_prime_UTR 50.0%
GGGTGATAATATCCAGGACC+AGG + chr4_3:68196765-68196784 Msa0658160:three_prime_UTR 50.0%
CTAACAATACCTGCGGCACC+AGG - chr4_3:68191839-68191858 None:intergenic 55.0%
CTTACCAGGTGGAGGAACAG+AGG - chr4_3:68192382-68192401 None:intergenic 55.0%
! GAACAGCGTTGGAGCTTACC+AGG - chr4_3:68192396-68192415 None:intergenic 55.0%
! CCTCGTGTACGGATTACCAG+GGG + chr4_3:68192843-68192862 Msa0658160:intron 55.0%
! CTCGTGTACGGATTACCAGG+GGG + chr4_3:68192844-68192863 Msa0658160:intron 55.0%
! GGTTTGGTTGTTTGGCCCGA+CGG + chr4_3:68192962-68192981 Msa0658160:intron 55.0%
GTTTGGTTGTTTGGCCCGAC+GGG + chr4_3:68192963-68192982 Msa0658160:intron 55.0%
TGAGAAACCACCATCCCGTC+GGG - chr4_3:68192980-68192999 None:intergenic 55.0%
GTGAGAAACCACCATCCCGT+CGG - chr4_3:68192981-68193000 None:intergenic 55.0%
! ATGGGGGTCATTTGGCTCCT+CGG + chr4_3:68193467-68193486 Msa0658160:intron 55.0%
CCGGCTCCTATGCTTGTGAA+AGG + chr4_3:68193728-68193747 Msa0658160:intron 55.0%
CGTCTTATGTTCCCGGGAAG+AGG + chr4_3:68193942-68193961 Msa0658160:intron 55.0%
CTTATGTTCCCGGGAAGAGG+CGG + chr4_3:68193945-68193964 Msa0658160:intron 55.0%
CAAGTAGCCCATGTCCCTTG+CGG + chr4_3:68194673-68194692 Msa0658160:CDS 55.0%
AAGTAGCCCATGTCCCTTGC+GGG + chr4_3:68194674-68194693 Msa0658160:CDS 55.0%
TTGTAGGAAGGCGGAAGGAG+GGG - chr4_3:68195061-68195080 None:intergenic 55.0%
CATTCAAAGCCTCCTGGTCC+TGG - chr4_3:68196780-68196799 None:intergenic 55.0%
CTTGTCGCAGAACACGGTCC+TGG + chr4_3:68191818-68191837 Msa0658160:five_prime_UTR 60.0%
CGTTGGAGCTTACCAGGTGG+AGG - chr4_3:68192390-68192409 None:intergenic 60.0%
! CAGCGTTGGAGCTTACCAGG+TGG - chr4_3:68192393-68192412 None:intergenic 60.0%
CCCCTGGTAATCCGTACACG+AGG - chr4_3:68192846-68192865 None:intergenic 60.0%
! TGGGGGTCATTTGGCTCCTC+GGG + chr4_3:68193468-68193487 Msa0658160:intron 60.0%
! TTGGAGCCAGTGGGTTCGCA+GGG - chr4_3:68193655-68193674 None:intergenic 60.0%
! ATTGGAGCCAGTGGGTTCGC+AGG - chr4_3:68193656-68193675 None:intergenic 60.0%
GCAGTTCCCGCAAGGGACAT+GGG - chr4_3:68194683-68194702 None:intergenic 60.0%
ATGTCCCTTGCGGGAACTGC+CGG + chr4_3:68194683-68194702 Msa0658160:CDS 60.0%
TTGTCCGGCAGTTCCCGCAA+GGG - chr4_3:68194690-68194709 None:intergenic 60.0%
TGTAGGAAGGCGGAAGGAGG+GGG - chr4_3:68195060-68195079 None:intergenic 60.0%
GTCCCGTGAGGTCTATGACC+AGG - chr4_3:68195923-68195942 None:intergenic 60.0%
ACCTCACGGGACAACCGACT+CGG + chr4_3:68195931-68195950 Msa0658160:intron 60.0%
GGTTGTTTGGCCCGACGGGA+TGG + chr4_3:68192967-68192986 Msa0658160:intron 65.0%
TGTTTGGCCCGACGGGATGG+TGG + chr4_3:68192970-68192989 Msa0658160:intron 65.0%
AGCAAGCCCTGCGAACCCAC+TGG + chr4_3:68193646-68193665 Msa0658160:intron 65.0%
! GAGCCGGGCTGCCACCTTTT+TGG - chr4_3:68193715-68193734 None:intergenic 65.0%
GGCAGTTCCCGCAAGGGACA+TGG - chr4_3:68194684-68194703 None:intergenic 65.0%
GTTGTCCGGCAGTTCCCGCA+AGG - chr4_3:68194691-68194710 None:intergenic 65.0%
! CCTCACGGGACAACCGACTC+GGG + chr4_3:68195932-68195951 Msa0658160:intron 65.0%
!! GAACACGGTCCTGGTGCCGC+AGG + chr4_3:68191827-68191846 Msa0658160:five_prime_UTR 70.0%
CCCGAGTCGGTTGTCCCGTG+AGG - chr4_3:68195935-68195954 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 68191398 68196802 68191398 ID=Msa0658160;Name=Msa0658160
chr4_3 mRNA 68191398 68196802 68191398 ID=Msa0658160-mRNA-1;Parent=Msa0658160;Name=Msa0658160-mRNA-1;_AED=0.09;_eAED=0.14;_QI=453|0.8|0.83|1|1|1|6|471|175
chr4_3 exon 68191398 68191848 68191398 ID=Msa0658160-mRNA-1:exon:19719;Parent=Msa0658160-mRNA-1
chr4_3 exon 68192283 68192396 68192283 ID=Msa0658160-mRNA-1:exon:19720;Parent=Msa0658160-mRNA-1
chr4_3 exon 68192548 68192658 68192548 ID=Msa0658160-mRNA-1:exon:19721;Parent=Msa0658160-mRNA-1
chr4_3 exon 68194665 68194777 68194665 ID=Msa0658160-mRNA-1:exon:19722;Parent=Msa0658160-mRNA-1
chr4_3 exon 68196022 68196171 68196022 ID=Msa0658160-mRNA-1:exon:19723;Parent=Msa0658160-mRNA-1
chr4_3 exon 68196290 68196802 68196290 ID=Msa0658160-mRNA-1:exon:19724;Parent=Msa0658160-mRNA-1
chr4_3 five_prime_UTR 68191398 68191848 68191398 ID=Msa0658160-mRNA-1:five_prime_utr;Parent=Msa0658160-mRNA-1
chr4_3 five_prime_UTR 68192283 68192284 68192283 ID=Msa0658160-mRNA-1:five_prime_utr;Parent=Msa0658160-mRNA-1
chr4_3 CDS 68192285 68192396 68192285 ID=Msa0658160-mRNA-1:cds;Parent=Msa0658160-mRNA-1
chr4_3 CDS 68192548 68192658 68192548 ID=Msa0658160-mRNA-1:cds;Parent=Msa0658160-mRNA-1
chr4_3 CDS 68194665 68194777 68194665 ID=Msa0658160-mRNA-1:cds;Parent=Msa0658160-mRNA-1
chr4_3 CDS 68196022 68196171 68196022 ID=Msa0658160-mRNA-1:cds;Parent=Msa0658160-mRNA-1
chr4_3 CDS 68196290 68196331 68196290 ID=Msa0658160-mRNA-1:cds;Parent=Msa0658160-mRNA-1
chr4_3 three_prime_UTR 68196332 68196802 68196332 ID=Msa0658160-mRNA-1:three_prime_utr;Parent=Msa0658160-mRNA-1
Gene Sequence

>Msa0658160

ATGCAGAGTCAACTTGTGTGTAATGGTTGTAGGAGCATGTTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTACCTCTGTTCCTCCACCTGGGATGGATATGTCTCAACTATATTGTGGAGGCTGTAGGACATTGTTAATGTACACACGCGGAGCTACAAGTGTCAGATGTTCTTGCTGTCATACTGTAAACCTTGCTCCAGTATCTAATCAAGTAGCCCATGTCCCTTGCGGGAACTGCCGGACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCTGTTTGTCACTATGTTACGAATATCAATCATAGAAAGGATGATGTTGGTGTTTTCTGTTCTGATAATCTAATGAATATCAATGTGATTCTGTTTTACTACCTACAGTCAATGCCCCAATCTCAGAGCCAAACAGTGGTTGTAGAAAATCCAATGTCTGTTGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGTGTTACAACAGATAAGAAATAA
Protein sequence

>Msa0658160

MQSQLVCNGCRSMLLYPRGATNVCCALCNTITSVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYVTNINHRKDDVGVFCSDNLMNINVILFYYLQSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK*