AlfalfaGEDB | Msa0659970

M. sativa cultivar zhongmu-4 / Msa0659970

KEGG: K14486
GO: GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0008285 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009838 GO:0009889 GO:0009890 GO:0009892 GO:0009900 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010047 GO:0010150 GO:0010227 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010959 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0033993 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035670 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090693 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901363 GO:1901379 GO:1901381 GO:1901700 GO:1902679 GO:1903286 GO:1903288 GO:1903506 GO:1903507 GO:1904062 GO:1904064 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659970	XP_003630583.2	97.119	833	19	1	1	828	1	833	0.0	1681

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659970	sp\|Q94JM3\|ARFB_ARATH	64.106	872	237	14	13	826	1	854	0.0	1077

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0659970	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659970	MtrunA17_Chr8g0385791	97.119	833	19	1	1	828	1	833	0.0	1681
Msa0659970	MtrunA17_Chr2g0276781	62.998	427	147	3	50	469	19	441	0.0	551
Msa0659970	MtrunA17_Chr2g0276781	41.489	188	99	3	617	804	470	646	5.19e-35	142
Msa0659970	MtrunA17_Chr8g0346711	64.067	359	120	5	42	395	13	367	2.90e-159	479
Msa0659970	MtrunA17_Chr8g0346711	39.362	188	94	4	616	793	468	645	4.83e-27	117
Msa0659970	MtrunA17_Chr7g0239061	61.436	376	135	7	48	418	8	378	5.99e-155	468
Msa0659970	MtrunA17_Chr7g0239061	37.566	189	105	4	611	799	488	663	7.01e-31	129
Msa0659970	MtrunA17_Chr4g0009751	62.895	380	121	7	54	425	19	386	6.86e-153	461
Msa0659970	MtrunA17_Chr4g0009751	55.072	69	30	1	704	772	554	621	2.16e-17	86.7
Msa0659970	MtrunA17_Chr4g0029671	38.925	614	327	10	52	629	52	653	7.68e-136	422

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0659970	AT5G62000.2	64.106	872	237	14	13	826	1	854	0.0	1077
Msa0659970	AT5G62000.5	64.106	872	237	14	13	826	1	854	0.0	1077
Msa0659970	AT5G62000.3	64.106	872	237	14	13	826	1	854	0.0	1077
Msa0659970	AT5G62000.1	64.106	872	237	14	13	826	1	854	0.0	1077
Msa0659970	AT5G62000.4	64.434	866	230	15	13	820	1	846	0.0	1071
Msa0659970	AT1G59750.4	68.767	365	111	2	50	412	18	381	2.91e-179	531
Msa0659970	AT1G59750.4	36.667	210	120	4	586	795	431	627	2.91e-32	134
Msa0659970	AT1G59750.2	68.767	365	111	2	50	412	18	381	3.85e-179	531
Msa0659970	AT1G59750.2	36.667	210	120	4	586	795	433	629	2.87e-32	134
Msa0659970	AT1G59750.1	68.767	365	111	2	50	412	18	381	4.11e-179	531

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Find 246 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAGAGAGAGAAAGT+GGG	0.590956	4_3:-70444930	Msa0659970:five_prime_UTR
AAAGAGTCATCGTCAATTGA+AGG	0.480956	4_3:-70444901	Msa0659970:five_prime_UTR
AAAGATGGCCAACATCTAAA+TGG	0.327483	4_3:-70442622	Msa0659970:CDS
AAATAGCTGATCCAATTCAG+CGG	0.687488	4_3:+70441315	None:intergenic
AAATTTAGCGACAGACCAGG+TGG	0.706484	4_3:+70442012	None:intergenic
AACACAAGTTCTCCTTCTCT+TGG	0.429337	4_3:+70444515	None:intergenic
AACATAACATGCTTACTCAA+TGG	0.515530	4_3:-70442044	Msa0659970:CDS
AACGAATGAACATGAAATCG+CGG	0.650113	4_3:+70443766	None:intergenic
AACGTATTCGGACCTTCTGT+CGG	0.500644	4_3:-70442091	Msa0659970:CDS
AACTACTTAATTACATTAAT+GGG	0.191163	4_3:+70440380	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTTAGAGAGAGAAAGT+GGG	-	chr4_3:70440414-70440433	Msa0659970:three_prime_UTR	30.0%
TTTCATGAAGAGTGAATGTT+TGG	-	chr4_3:70440521-70440540	Msa0659970:three_prime_UTR	30.0%
TTCATGAAGAGTGAATGTTT+GGG	-	chr4_3:70440522-70440541	Msa0659970:three_prime_UTR	30.0%
AACAACTTACAACGTTAACA+TGG	-	chr4_3:70440674-70440693	Msa0659970:three_prime_UTR	30.0%
TTTCCGACAATTATCTTTCA+TGG	-	chr4_3:70440901-70440920	Msa0659970:intron	30.0%
GACAATTATCTTTCATGGTT+TGG	-	chr4_3:70440906-70440925	Msa0659970:intron	30.0%
ACATAATTCAATGCATTAGG+TGG	-	chr4_3:70441086-70441105	Msa0659970:CDS	30.0%
AACAATTAAACAACACAAGG+AGG	+	chr4_3:70441716-70441735	None:intergenic	30.0%
AGAAGAAATATGAGCAAGAA+CGG	+	chr4_3:70442411-70442430	None:intergenic	30.0%
AACATAACATGCTTACTCAA+TGG	-	chr4_3:70443300-70443319	Msa0659970:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	70440221	70445145	70440221	ID=Msa0659970;Name=Msa0659970
chr4_3	mRNA	70440221	70445145	70440221	ID=Msa0659970-mRNA-1;Parent=Msa0659970;Name=Msa0659970-mRNA-1;_AED=0.09;_eAED=0.09;_QI=315\|1\|1\|1\|0.92\|0.85\|14\|550\|828
chr4_3	exon	70440221	70440763	70440221	ID=Msa0659970-mRNA-1:exon:20920;Parent=Msa0659970-mRNA-1
chr4_3	exon	70440937	70441112	70440937	ID=Msa0659970-mRNA-1:exon:20919;Parent=Msa0659970-mRNA-1
chr4_3	exon	70441217	70441407	70441217	ID=Msa0659970-mRNA-1:exon:20918;Parent=Msa0659970-mRNA-1
chr4_3	exon	70441483	70442342	70441483	ID=Msa0659970-mRNA-1:exon:20917;Parent=Msa0659970-mRNA-1
chr4_3	exon	70442438	70442685	70442438	ID=Msa0659970-mRNA-1:exon:20916;Parent=Msa0659970-mRNA-1
chr4_3	exon	70442812	70442931	70442812	ID=Msa0659970-mRNA-1:exon:20915;Parent=Msa0659970-mRNA-1
chr4_3	exon	70443053	70443217	70443053	ID=Msa0659970-mRNA-1:exon:20914;Parent=Msa0659970-mRNA-1
chr4_3	exon	70443302	70443392	70443302	ID=Msa0659970-mRNA-1:exon:20913;Parent=Msa0659970-mRNA-1
chr4_3	exon	70443501	70443585	70443501	ID=Msa0659970-mRNA-1:exon:20912;Parent=Msa0659970-mRNA-1
chr4_3	exon	70443678	70443833	70443678	ID=Msa0659970-mRNA-1:exon:20911;Parent=Msa0659970-mRNA-1
chr4_3	exon	70443952	70444008	70443952	ID=Msa0659970-mRNA-1:exon:20910;Parent=Msa0659970-mRNA-1
chr4_3	exon	70444166	70444261	70444166	ID=Msa0659970-mRNA-1:exon:20909;Parent=Msa0659970-mRNA-1
chr4_3	exon	70444487	70444599	70444487	ID=Msa0659970-mRNA-1:exon:20908;Parent=Msa0659970-mRNA-1
chr4_3	exon	70444695	70445145	70444695	ID=Msa0659970-mRNA-1:exon:20907;Parent=Msa0659970-mRNA-1
chr4_3	five_prime_UTR	70444831	70445145	70444831	ID=Msa0659970-mRNA-1:five_prime_utr;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70444695	70444830	70444695	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70444487	70444599	70444487	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70444166	70444261	70444166	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70443952	70444008	70443952	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70443678	70443833	70443678	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70443501	70443585	70443501	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70443302	70443392	70443302	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70443053	70443217	70443053	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70442812	70442931	70442812	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70442438	70442685	70442438	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70441483	70442342	70441483	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70441217	70441407	70441217	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	CDS	70440944	70441112	70440944	ID=Msa0659970-mRNA-1:cds;Parent=Msa0659970-mRNA-1
chr4_3	three_prime_UTR	70440937	70440943	70440937	ID=Msa0659970-mRNA-1:three_prime_utr;Parent=Msa0659970-mRNA-1
chr4_3	three_prime_UTR	70440221	70440763	70440221	ID=Msa0659970-mRNA-1:three_prime_utr;Parent=Msa0659970-mRNA-1

Gene Sequence

>Msa0659970

ATGTTTGGGATGAGAGATCTGGAAGAAGATAGAAACATGGCATCATCAGAAGTATCTATGAAGGGAAATTCTGTCAACGGAAAAGGTGAAAGCAACGTTGATGCTGTTGGAGATGCTCAAAATGGTTCTTCAAGAGAAGCTGAAGCTGCACTTTACAGAGAACTATGGCATGCGTGTGCTGGTCCTTTGGTAACGGTTCCAAGAGAAGGAGAACTTGTGTTCTATTTTCCACAAGGACATATTGAACAGGTGGAAGCTTCGACAAATCAAGCATCGGAACAACACATGCCCGTTTACGATCTCCGTCCTAAGATCCTTTGTCGGGTCATCAACGTTATGCTAAAGGCGGAGCCAGATACTGATGAGGTGTTTGCCCAAGTGACTTTGGTACCAGAGCCCAATCAAGATGAAAATGCTGTTGAGAAAGAAGCTCCACCTGCTCCTCCGCCGCGATTTCATGTTCATTCGTTTTGTAAAACATTGACTGCATCTGATACTAGTACTCATGGTGGTTTTTCTGTACTTAGACGTCATGCTGATGAATGCCTTCCTCCACTGGATATGTCAAAACAACCACCTACACAGGAATTGGTGGCCAAGGATCTGCACGGGAATGAGTGGCGTTTTAGGCATATTTTTCGCGGTCAACCACGTAGACATTTGCTGCAGAGTGGTTGGAGTGTTTTTGTCAGTTCTAAGAGGCTGGTTGCTGGGGATGCATTTATATTTCTAAGAGGTGAGAATGGGGAGCTTCGAGTTGGTGTCAGGCGTGCAATGAGACAGCAGGGTAATGTTCCGTCTTCGGTTATCTCTAGCCATAGCATGCATCTCGGTGTTCTTGCGACTGCTTGGCATGCTGTTTTGACTGGGACCATGTTCACTGTTTATTACAAACCCCGGACAAGTCCAGCGGAGTTTATTGTTCCGTATGATCAATACATGGAGTCTCTAAAAAATAATTATACAATAGGCATGCGGTTTAAAATGAGGTTTGAGGGTGAAGAGGCTCCTGAGCAAAGGTTTACAGGTACCATTGTTGGCATTGAAGACTCTGACTCCAAAAGATGGCCAACATCTAAATGGAGATGTCTCAAGGTTAGATGGGATGAGACCTCTAACATACCTCGTCCTGAGAGAGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTCTAAATCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGAGCTAACGTGGTGCCGTCCTCCCCAGATTCTTCTGTTCTTACCCGCGAAGCATCGTCAAAAGTATGCATGGACCCTTTGCCCACTAGTGGTTTCCAGAGGGTCTTGCAAGGTCAAGAATCATCGACCTTGAGAGGAAATTTGGCTGAAAGCAACGACTCTTACACTGCAGAGAAGTCGGTTGCCTGGACTCCTGCAACTGATGAAGAAAAGATGGATGCTGTTTCTACTTCAAGAAGGTATGGTTCAGAGAACTGGATGTCAATGTCAAGGCTGGAACCAACGTATTCGGACCTTCTGTCGGGATTTGGTAGTGCCCGTGAAGGCAAACATAACATGCTTACTCAATGGCCTGTAATGCCACCTGGTCTGTCGCTAAATTTCTTGCACTCTAATATGAAAGGTTCTGCACAAGGCAGTGATAATGCCACTTACCAAGCTCAAGGTAATATGAGATACAGTGCATTTGGTGATTACTCAGTGCTTCATGGACATAAAGTTGAAAATCCACACGGAAACTTTTTGATGCCACCACCACCACCAACTCAATACGAGAGTCCCCATTCTACAGAATCGTCACAGAAACAAATGTCTTCAAAAACAAGCGAGGCTGCAAAACCGAAAGACAGTGACTGTAAGCTATTCGGCTTCTCGCTTCTCAGTAGCCCAACTATGCCGGACCCTTCAATATCTCAAAGAAATGTTACAAACGAGACTTCTAGTCCCATGCAAATTTCATCACAACATCACACATTTGAAAATGATCAGAAGTCTGAACATTCAAAGAGCTTCAAACCAGCTGATAAACTAGTCATAGTTGATGAGCACGAGAAGCAGTTGCAAACTTCTCAGCCTCATGTTAAAGATGTTCAACTCAAACCTCAAAGTGGTTCTGCTAGAAGCTGCACAAAAGTTCACAAGAAAGGGATTGCGCTTGGTAGGTCGGTTGATCTTACAAAGTTTAGTGACTATGATGAATTAACCGCTGAATTGGATCAGCTATTTGAATTTGGAGGTGAACTAATATCTCCACAAAAGGATTGGCTCGTGGTCTTCACTGATAATGAGGGTGACATGATGCTTGTTGGCGACGATCCATGGCAGGAGTTTTGTTCAATGGTTCGCAAAATTTACATCTACCCCAAAGAAGAGATTCAGAAAATGAGCCCAGGCACATTGAGTTCGAAAAATGAAGAGAATCATTCAGCTACCGATGGCGGAGATGCACAAGAAACTAAATCTCAGCTGAATCAATCAGCTTCAGATAATTGA

Protein sequence

>Msa0659970

MFGMRDLEEDRNMASSEVSMKGNSVNGKGESNVDAVGDAQNGSSREAEAALYRELWHACAGPLVTVPREGELVFYFPQGHIEQVEASTNQASEQHMPVYDLRPKILCRVINVMLKAEPDTDEVFAQVTLVPEPNQDENAVEKEAPPAPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAVLTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDSDSKRWPTSKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRANVVPSSPDSSVLTREASSKVCMDPLPTSGFQRVLQGQESSTLRGNLAESNDSYTAEKSVAWTPATDEEKMDAVSTSRRYGSENWMSMSRLEPTYSDLLSGFGSAREGKHNMLTQWPVMPPGLSLNFLHSNMKGSAQGSDNATYQAQGNMRYSAFGDYSVLHGHKVENPHGNFLMPPPPPTQYESPHSTESSQKQMSSKTSEAAKPKDSDCKLFGFSLLSSPTMPDPSISQRNVTNETSSPMQISSQHHTFENDQKSEHSKSFKPADKLVIVDEHEKQLQTSQPHVKDVQLKPQSGSARSCTKVHKKGIALGRSVDLTKFSDYDELTAELDQLFEFGGELISPQKDWLVVFTDNEGDMMLVGDDPWQEFCSMVRKIYIYPKEEIQKMSPGTLSSKNEENHSATDGGDAQETKSQLNQSASDN*