Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660630 | AES82018.2 | 57.676 | 241 | 40 | 6 | 45 | 239 | 4 | 228 | 2.36e-77 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660630 | sp|P52416|GLGS1_VICFA | 85.526 | 76 | 11 | 0 | 25 | 100 | 338 | 413 | 4.05e-39 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0660630 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660630 | MtrunA17_Chr5g0447341 | 85.526 | 76 | 11 | 0 | 25 | 100 | 345 | 420 | 2.97e-40 | 144 |
| Msa0660630 | MtrunA17_Chr4g0077071 | 79.452 | 73 | 15 | 0 | 28 | 100 | 3 | 75 | 4.37e-37 | 125 |
| Msa0660630 | MtrunA17_Chr3g0120471 | 81.579 | 76 | 11 | 1 | 25 | 100 | 344 | 416 | 4.92e-36 | 133 |
| Msa0660630 | MtrunA17_Chr4g0057621 | 80.769 | 52 | 10 | 0 | 164 | 215 | 421 | 472 | 1.10e-19 | 87.8 |
| Msa0660630 | MtrunA17_Chr3g0141761 | 33.333 | 129 | 70 | 3 | 25 | 149 | 361 | 477 | 3.52e-16 | 77.4 |
| Msa0660630 | MtrunA17_Chr7g0271011 | 41.096 | 73 | 42 | 1 | 25 | 97 | 367 | 438 | 1.43e-14 | 72.4 |
| Msa0660630 | MtrunA17_Chr4g0074531 | 44.737 | 76 | 41 | 1 | 25 | 100 | 352 | 426 | 3.94e-13 | 68.2 |
| Msa0660630 | MtrunA17_Chr4g0035171 | 38.356 | 73 | 44 | 1 | 25 | 97 | 359 | 430 | 1.88e-12 | 66.2 |
| Msa0660630 | MtrunA17_Chr3g0101491 | 79.412 | 34 | 7 | 0 | 55 | 88 | 30 | 63 | 3.58e-12 | 60.8 |
| Msa0660630 | MtrunA17_Chr3g0144731 | 40.741 | 54 | 32 | 0 | 44 | 97 | 10 | 63 | 9.98e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660630 | AT5G48300.1 | 81.579 | 76 | 14 | 0 | 25 | 100 | 350 | 425 | 1.19e-38 | 140 |
| Msa0660630 | AT1G27680.1 | 41.096 | 73 | 42 | 1 | 25 | 97 | 349 | 420 | 5.74e-14 | 71.2 |
| Msa0660630 | AT4G39210.2 | 40.260 | 77 | 45 | 1 | 25 | 101 | 352 | 427 | 1.58e-13 | 69.7 |
| Msa0660630 | AT4G39210.1 | 40.260 | 77 | 45 | 1 | 25 | 101 | 352 | 427 | 1.58e-13 | 69.7 |
| Msa0660630 | AT5G19220.1 | 45.333 | 75 | 40 | 1 | 25 | 99 | 353 | 426 | 5.30e-13 | 68.2 |
| Msa0660630 | AT2G21590.2 | 37.662 | 77 | 47 | 1 | 25 | 101 | 354 | 429 | 1.83e-12 | 66.6 |
| Msa0660630 | AT2G21590.3 | 37.662 | 77 | 47 | 1 | 25 | 101 | 354 | 429 | 1.83e-12 | 66.6 |
| Msa0660630 | AT2G21590.5 | 37.662 | 77 | 47 | 1 | 25 | 101 | 354 | 429 | 1.83e-12 | 66.6 |
| Msa0660630 | AT2G21590.4 | 37.662 | 77 | 47 | 1 | 25 | 101 | 354 | 429 | 1.83e-12 | 66.6 |
| Msa0660630 | AT2G21590.7 | 37.662 | 77 | 47 | 1 | 25 | 101 | 354 | 429 | 1.83e-12 | 66.6 |
| Msa0660630 | AT2G21590.1 | 37.662 | 77 | 47 | 1 | 25 | 101 | 354 | 429 | 1.83e-12 | 66.6 |
| Msa0660630 | AT2G21590.6 | 37.662 | 77 | 47 | 1 | 25 | 101 | 354 | 429 | 1.83e-12 | 66.6 |
| Msa0660630 | AT1G05610.1 | 41.096 | 73 | 39 | 1 | 28 | 100 | 311 | 379 | 9.41e-11 | 61.6 |
Find 45 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAATTGCCTCAGGTTTC+AGG | 0.144008 | 4_3:-71592922 | Msa0660630:intron |
| TTCTTTATAAATGCGCTTAA+AGG | 0.162223 | 4_3:+71593769 | None:intergenic |
| AATTGGATTGAAACTATATA+TGG | 0.256456 | 4_3:-71594507 | Msa0660630:CDS |
| CGGGGAAGGATGTGCAATTA+AGG | 0.304222 | 4_3:-71594070 | Msa0660630:intron |
| ACTGCAGCCCGACCACTAAA+TGG | 0.318789 | 4_3:+71593917 | None:intergenic |
| ATACTTGATTCCTGTGGATT+TGG | 0.331965 | 4_3:-71593799 | Msa0660630:CDS |
| GTATTTGGTGCAGAAAATTC+AGG | 0.340118 | 4_3:-71593452 | Msa0660630:intron |
| TTGCAAAATCTTCCATTTAG+TGG | 0.342717 | 4_3:-71593929 | Msa0660630:CDS |
| TCTTTATAAATGCGCTTAAA+GGG | 0.372019 | 4_3:+71593770 | None:intergenic |
| GATATCACTGATAGTGTTAT+CGG | 0.384478 | 4_3:-71594090 | Msa0660630:CDS |
| TCAGTGCGAAGTAAATTATC+AGG | 0.412783 | 4_3:-71592835 | Msa0660630:CDS |
| AAATTCAGCAAATTACATTC+AGG | 0.419246 | 4_3:-71593868 | Msa0660630:CDS |
| AAAAGCATGTACCTGACTTC+AGG | 0.420411 | 4_3:-71594281 | Msa0660630:intron |
| CTATTTATTTACCTGAAGTC+AGG | 0.423738 | 4_3:+71594270 | None:intergenic |
| AAGTAAATTATCAGGACTTA+AGG | 0.440292 | 4_3:-71592827 | Msa0660630:CDS |
| TAATAACTTGCTGGCAGGAC+AGG | 0.447155 | 4_3:-71592740 | Msa0660630:CDS |
| TTGAGATTGTGCTGGAGAGA+AGG | 0.453920 | 4_3:-71592774 | Msa0660630:CDS |
| AAATCTTCCATTTAGTGGTC+GGG | 0.454966 | 4_3:-71593924 | Msa0660630:CDS |
| CAACAACAGCTTGGAGAGCT+AGG | 0.464849 | 4_3:-71592707 | Msa0660630:CDS |
| TATCGCGGTTGAGTGTAAAC+TGG | 0.470469 | 4_3:+71594141 | None:intergenic |
| AAGAGAACCTCTCTAGGGAT+TGG | 0.475653 | 4_3:+71593401 | None:intergenic |
| ATGGTTGTGTAATAACTTGC+TGG | 0.475745 | 4_3:-71592749 | Msa0660630:CDS |
| AAAATCAAGTGTAACTCTGT+TGG | 0.477213 | 4_3:-71592802 | Msa0660630:CDS |
| CTCAGGTTTCAGGAAATAGC+AGG | 0.477309 | 4_3:-71592912 | Msa0660630:intron |
| ATATCACTGATAGTGTTATC+GGG | 0.483108 | 4_3:-71594089 | Msa0660630:CDS |
| ATAACAAAGAGAACCTCTCT+AGG | 0.493848 | 4_3:+71593395 | None:intergenic |
| TGGAGAGTTTGAGATTGTGC+TGG | 0.507140 | 4_3:-71592782 | Msa0660630:CDS |
| TTGTGCTGGAGAGAAGGAAA+TGG | 0.520397 | 4_3:-71592768 | Msa0660630:CDS |
| GCTTTCAATAATGCAAATCT+CGG | 0.524294 | 4_3:-71594312 | Msa0660630:CDS |
| AAAATCTTCCATTTAGTGGT+CGG | 0.526450 | 4_3:-71593925 | Msa0660630:CDS |
| AGGGACTTTACCAAATCCAC+AGG | 0.571697 | 4_3:+71593789 | None:intergenic |
| ACTGATAGTGTTATCGGGGA+AGG | 0.575346 | 4_3:-71594084 | Msa0660630:CDS |
| TAACAAAGAGAACCTCTCTA+GGG | 0.584194 | 4_3:+71593396 | None:intergenic |
| TGCTAATCCAATCCCTAGAG+AGG | 0.591435 | 4_3:-71593408 | Msa0660630:intron |
| TTGAAACAATATATGGATTG+TGG | 0.600376 | 4_3:-71594551 | None:intergenic |
| GGAAGACATTGGTATCATTG+AGG | 0.601713 | 4_3:-71594334 | Msa0660630:intron |
| TTGAAACTATATATGGATTG+TGG | 0.617517 | 4_3:-71594500 | Msa0660630:CDS |
| ACATCAAGCATCTTCGACGG+AGG | 0.618921 | 4_3:+71594114 | None:intergenic |
| AAACTATATATGGATTGTGG+TGG | 0.623908 | 4_3:-71594497 | Msa0660630:CDS |
| TTGTGTAATAACTTGCTGGC+AGG | 0.629307 | 4_3:-71592745 | Msa0660630:CDS |
| TTTATGATACTTGATTCCTG+TGG | 0.641002 | 4_3:-71593805 | Msa0660630:CDS |
| TCAACATCAAGCATCTTCGA+CGG | 0.656482 | 4_3:+71594111 | None:intergenic |
| TTCGACGGAGGCAAGTATCG+CGG | 0.672054 | 4_3:+71594126 | None:intergenic |
| TCAGGTTTCAGGAAATAGCA+GGG | 0.674198 | 4_3:-71592911 | Msa0660630:intron |
| TATCACTGATAGTGTTATCG+GGG | 0.676811 | 4_3:-71594088 | Msa0660630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAGAATGTAAATTTTTGT+TGG | - | chr4_3:71593487-71593506 | Msa0660630:intron | 15.0% |
| !! | CTTTAGATATGTAAATATAA+TGG | + | chr4_3:71593764-71593783 | None:intergenic | 15.0% |
| !!! | ATATTTACATATCTAAAGTT+TGG | - | chr4_3:71593766-71593785 | Msa0660630:intron | 15.0% |
| !!! | TAAAGAATGTAAATTTTTGT+TGG | - | chr4_3:71593487-71593506 | Msa0660630:intron | 15.0% |
| !! | CTTTAGATATGTAAATATAA+TGG | + | chr4_3:71593764-71593783 | None:intergenic | 15.0% |
| !!! | ATATTTACATATCTAAAGTT+TGG | - | chr4_3:71593766-71593785 | Msa0660630:intron | 15.0% |
| !! | AATTGGATTGAAACTATATA+TGG | - | chr4_3:71592733-71592752 | Msa0660630:CDS | 20.0% |
| !! | ATTATACATGTCAATTCAAT+AGG | + | chr4_3:71592797-71592816 | None:intergenic | 20.0% |
| !! | ATGACAATATGATGATTATA+TGG | + | chr4_3:71593004-71593023 | None:intergenic | 20.0% |
| !! | AGATGTCAAATATGATTAAA+TGG | - | chr4_3:71593247-71593266 | Msa0660630:intron | 20.0% |
| !! | TACATGAAAAACTTGATAAA+TGG | - | chr4_3:71593412-71593431 | Msa0660630:CDS | 20.0% |
| !! | AATTGGATTGAAACTATATA+TGG | - | chr4_3:71592733-71592752 | Msa0660630:CDS | 20.0% |
| !! | ATTATACATGTCAATTCAAT+AGG | + | chr4_3:71592797-71592816 | None:intergenic | 20.0% |
| !! | ATGACAATATGATGATTATA+TGG | + | chr4_3:71593004-71593023 | None:intergenic | 20.0% |
| !! | AGATGTCAAATATGATTAAA+TGG | - | chr4_3:71593247-71593266 | Msa0660630:intron | 20.0% |
| !! | TACATGAAAAACTTGATAAA+TGG | - | chr4_3:71593412-71593431 | Msa0660630:CDS | 20.0% |
| ! | GAATGTGAGTTTGAAAAAAT+TGG | - | chr4_3:71592716-71592735 | Msa0660630:CDS | 25.0% |
| !! | TTGAAACTATATATGGATTG+TGG | - | chr4_3:71592740-71592759 | Msa0660630:CDS | 25.0% |
| ! | GTGTAAGCTTACTTATATTA+TGG | - | chr4_3:71592877-71592896 | Msa0660630:CDS | 25.0% |
| ! | AAATTCAGCAAATTACATTC+AGG | - | chr4_3:71593372-71593391 | Msa0660630:intron | 25.0% |
| ! | TCTTTATAAATGCGCTTAAA+GGG | + | chr4_3:71593473-71593492 | None:intergenic | 25.0% |
| ! | TTCTTTATAAATGCGCTTAA+AGG | + | chr4_3:71593474-71593493 | None:intergenic | 25.0% |
| !!! | TAACTTTTTCTTACCACTTT+AGG | - | chr4_3:71593535-71593554 | Msa0660630:intron | 25.0% |
| !! | CTAACTTTTATAGACCAAAA+AGG | + | chr4_3:71593643-71593662 | None:intergenic | 25.0% |
| !! | CATATCTAAAGTTTGGTATT+TGG | - | chr4_3:71593773-71593792 | Msa0660630:CDS | 25.0% |
| !!! | TTGTAATTTTTCAAGAACTC+TGG | + | chr4_3:71593908-71593927 | None:intergenic | 25.0% |
| ! | GAAAAATTACAAATCAAGCT+TGG | - | chr4_3:71593916-71593935 | Msa0660630:CDS | 25.0% |
| !!! | TTCTTTATTTCTGTTTCTCA+AGG | + | chr4_3:71594002-71594021 | None:intergenic | 25.0% |
| ! | CAGAAATAAAGAAGAAAATG+TGG | - | chr4_3:71594009-71594028 | Msa0660630:intron | 25.0% |
| !! | CAAATTTGTTTGACACATTA+AGG | + | chr4_3:71594035-71594054 | None:intergenic | 25.0% |
| ! | AAATTTAGCAACAACAGATA+TGG | + | chr4_3:71594156-71594175 | None:intergenic | 25.0% |
| ! | TACCTGAATTATTAGTGATA+TGG | - | chr4_3:71594286-71594305 | Msa0660630:CDS | 25.0% |
| ! | ATCCATATCACTAATAATTC+AGG | + | chr4_3:71594291-71594310 | None:intergenic | 25.0% |
| ! | AAGTAAATTATCAGGACTTA+AGG | - | chr4_3:71594413-71594432 | Msa0660630:intron | 25.0% |
| ! | GAATGTGAGTTTGAAAAAAT+TGG | - | chr4_3:71592716-71592735 | Msa0660630:CDS | 25.0% |
| !! | TTGAAACTATATATGGATTG+TGG | - | chr4_3:71592740-71592759 | Msa0660630:CDS | 25.0% |
| ! | GTGTAAGCTTACTTATATTA+TGG | - | chr4_3:71592877-71592896 | Msa0660630:CDS | 25.0% |
| ! | AAATTCAGCAAATTACATTC+AGG | - | chr4_3:71593372-71593391 | Msa0660630:intron | 25.0% |
| ! | TCTTTATAAATGCGCTTAAA+GGG | + | chr4_3:71593473-71593492 | None:intergenic | 25.0% |
| ! | TTCTTTATAAATGCGCTTAA+AGG | + | chr4_3:71593474-71593493 | None:intergenic | 25.0% |
| !!! | TAACTTTTTCTTACCACTTT+AGG | - | chr4_3:71593535-71593554 | Msa0660630:intron | 25.0% |
| !! | CTAACTTTTATAGACCAAAA+AGG | + | chr4_3:71593643-71593662 | None:intergenic | 25.0% |
| !! | CATATCTAAAGTTTGGTATT+TGG | - | chr4_3:71593773-71593792 | Msa0660630:CDS | 25.0% |
| !!! | TTGTAATTTTTCAAGAACTC+TGG | + | chr4_3:71593908-71593927 | None:intergenic | 25.0% |
| ! | GAAAAATTACAAATCAAGCT+TGG | - | chr4_3:71593916-71593935 | Msa0660630:CDS | 25.0% |
| !!! | TTCTTTATTTCTGTTTCTCA+AGG | + | chr4_3:71594002-71594021 | None:intergenic | 25.0% |
| ! | CAGAAATAAAGAAGAAAATG+TGG | - | chr4_3:71594009-71594028 | Msa0660630:intron | 25.0% |
| !! | CAAATTTGTTTGACACATTA+AGG | + | chr4_3:71594035-71594054 | None:intergenic | 25.0% |
| ! | AAATTTAGCAACAACAGATA+TGG | + | chr4_3:71594156-71594175 | None:intergenic | 25.0% |
| ! | TACCTGAATTATTAGTGATA+TGG | - | chr4_3:71594286-71594305 | Msa0660630:CDS | 25.0% |
| ! | ATCCATATCACTAATAATTC+AGG | + | chr4_3:71594291-71594310 | None:intergenic | 25.0% |
| ! | AAGTAAATTATCAGGACTTA+AGG | - | chr4_3:71594413-71594432 | Msa0660630:intron | 25.0% |
| ! | AAACTATATATGGATTGTGG+TGG | - | chr4_3:71592743-71592762 | Msa0660630:CDS | 30.0% |
| TGACATGTATAATCTTGCTA+TGG | - | chr4_3:71592804-71592823 | Msa0660630:CDS | 30.0% | |
| ACTTTCATAGCTTAAATCTC+AGG | - | chr4_3:71592828-71592847 | Msa0660630:CDS | 30.0% | |
| CTTACTTATATTATGGCTAC+CGG | - | chr4_3:71592884-71592903 | Msa0660630:CDS | 30.0% | |
| TTACTTATATTATGGCTACC+GGG | - | chr4_3:71592885-71592904 | Msa0660630:CDS | 30.0% | |
| GCTTTCAATAATGCAAATCT+CGG | - | chr4_3:71592928-71592947 | Msa0660630:intron | 30.0% | |
| CTATTTATTTACCTGAAGTC+AGG | + | chr4_3:71592973-71592992 | None:intergenic | 30.0% | |
| CTGACTTCAGGTAAATAAAT+AGG | - | chr4_3:71592971-71592990 | Msa0660630:intron | 30.0% | |
| ! | GATATCACTGATAGTGTTAT+CGG | - | chr4_3:71593150-71593169 | Msa0660630:intron | 30.0% |
| ! | ATATCACTGATAGTGTTATC+GGG | - | chr4_3:71593151-71593170 | Msa0660630:intron | 30.0% |
| TCACATTCTACGAACATATT+CGG | + | chr4_3:71593206-71593225 | None:intergenic | 30.0% | |
| ! | ATGGAAGATTTTGCAATTCT+AGG | + | chr4_3:71593307-71593326 | None:intergenic | 30.0% |
| TTGCAAAATCTTCCATTTAG+TGG | - | chr4_3:71593311-71593330 | Msa0660630:intron | 30.0% | |
| AAAATCTTCCATTTAGTGGT+CGG | - | chr4_3:71593315-71593334 | Msa0660630:intron | 30.0% | |
| TTTATGATACTTGATTCCTG+TGG | - | chr4_3:71593435-71593454 | Msa0660630:CDS | 30.0% | |
| TGGTAAGAAAAAGTTAGATG+AGG | + | chr4_3:71593531-71593550 | None:intergenic | 30.0% | |
| ! | TTTCTTACCACTTTAGGTTT+AGG | - | chr4_3:71593541-71593560 | Msa0660630:intron | 30.0% |
| TTATAGACCAAAAAGGACTA+AGG | + | chr4_3:71593636-71593655 | None:intergenic | 30.0% | |
| TAACAGTACATGTATGTGAA+AGG | + | chr4_3:71593680-71593699 | None:intergenic | 30.0% | |
| !! | GTTCTCTTTGTTATTCAGAA+GGG | - | chr4_3:71593854-71593873 | Msa0660630:CDS | 30.0% |
| ! | GAAAAGTGAGATTAGCTAAA+AGG | + | chr4_3:71593978-71593997 | None:intergenic | 30.0% |
| ! | ATGTCATTTAATTCCATGCA+AGG | - | chr4_3:71594119-71594138 | Msa0660630:CDS | 30.0% |
| ATTTCATTGCTTCATGAACT+CGG | + | chr4_3:71594198-71594217 | None:intergenic | 30.0% | |
| AGTTCATGAAGCAATGAAAT+TGG | - | chr4_3:71594198-71594217 | Msa0660630:intron | 30.0% | |
| ! | TTAGACAGTATTTTGCTTTG+AGG | - | chr4_3:71594225-71594244 | Msa0660630:intron | 30.0% |
| ! | ACTGATCTAAATTTTGAACG+GGG | + | chr4_3:71594390-71594409 | None:intergenic | 30.0% |
| ! | CACTGATCTAAATTTTGAAC+GGG | + | chr4_3:71594391-71594410 | None:intergenic | 30.0% |
| !! | GCACTGATCTAAATTTTGAA+CGG | + | chr4_3:71594392-71594411 | None:intergenic | 30.0% |
| AAAATCAAGTGTAACTCTGT+TGG | - | chr4_3:71594438-71594457 | Msa0660630:intron | 30.0% | |
| ! | AAACTATATATGGATTGTGG+TGG | - | chr4_3:71592743-71592762 | Msa0660630:CDS | 30.0% |
| TGACATGTATAATCTTGCTA+TGG | - | chr4_3:71592804-71592823 | Msa0660630:CDS | 30.0% | |
| ACTTTCATAGCTTAAATCTC+AGG | - | chr4_3:71592828-71592847 | Msa0660630:CDS | 30.0% | |
| CTTACTTATATTATGGCTAC+CGG | - | chr4_3:71592884-71592903 | Msa0660630:CDS | 30.0% | |
| TTACTTATATTATGGCTACC+GGG | - | chr4_3:71592885-71592904 | Msa0660630:CDS | 30.0% | |
| GCTTTCAATAATGCAAATCT+CGG | - | chr4_3:71592928-71592947 | Msa0660630:intron | 30.0% | |
| CTATTTATTTACCTGAAGTC+AGG | + | chr4_3:71592973-71592992 | None:intergenic | 30.0% | |
| CTGACTTCAGGTAAATAAAT+AGG | - | chr4_3:71592971-71592990 | Msa0660630:intron | 30.0% | |
| ! | GATATCACTGATAGTGTTAT+CGG | - | chr4_3:71593150-71593169 | Msa0660630:intron | 30.0% |
| ! | ATATCACTGATAGTGTTATC+GGG | - | chr4_3:71593151-71593170 | Msa0660630:intron | 30.0% |
| TCACATTCTACGAACATATT+CGG | + | chr4_3:71593206-71593225 | None:intergenic | 30.0% | |
| ! | ATGGAAGATTTTGCAATTCT+AGG | + | chr4_3:71593307-71593326 | None:intergenic | 30.0% |
| TTGCAAAATCTTCCATTTAG+TGG | - | chr4_3:71593311-71593330 | Msa0660630:intron | 30.0% | |
| AAAATCTTCCATTTAGTGGT+CGG | - | chr4_3:71593315-71593334 | Msa0660630:intron | 30.0% | |
| TTTATGATACTTGATTCCTG+TGG | - | chr4_3:71593435-71593454 | Msa0660630:CDS | 30.0% | |
| TGGTAAGAAAAAGTTAGATG+AGG | + | chr4_3:71593531-71593550 | None:intergenic | 30.0% | |
| ! | TTTCTTACCACTTTAGGTTT+AGG | - | chr4_3:71593541-71593560 | Msa0660630:intron | 30.0% |
| TTATAGACCAAAAAGGACTA+AGG | + | chr4_3:71593636-71593655 | None:intergenic | 30.0% | |
| TAACAGTACATGTATGTGAA+AGG | + | chr4_3:71593680-71593699 | None:intergenic | 30.0% | |
| !! | GTTCTCTTTGTTATTCAGAA+GGG | - | chr4_3:71593854-71593873 | Msa0660630:CDS | 30.0% |
| ! | GAAAAGTGAGATTAGCTAAA+AGG | + | chr4_3:71593978-71593997 | None:intergenic | 30.0% |
| ! | ATGTCATTTAATTCCATGCA+AGG | - | chr4_3:71594119-71594138 | Msa0660630:CDS | 30.0% |
| ATTTCATTGCTTCATGAACT+CGG | + | chr4_3:71594198-71594217 | None:intergenic | 30.0% | |
| AGTTCATGAAGCAATGAAAT+TGG | - | chr4_3:71594198-71594217 | Msa0660630:intron | 30.0% | |
| ! | TTAGACAGTATTTTGCTTTG+AGG | - | chr4_3:71594225-71594244 | Msa0660630:intron | 30.0% |
| ! | ACTGATCTAAATTTTGAACG+GGG | + | chr4_3:71594390-71594409 | None:intergenic | 30.0% |
| ! | CACTGATCTAAATTTTGAAC+GGG | + | chr4_3:71594391-71594410 | None:intergenic | 30.0% |
| !! | GCACTGATCTAAATTTTGAA+CGG | + | chr4_3:71594392-71594411 | None:intergenic | 30.0% |
| AAAATCAAGTGTAACTCTGT+TGG | - | chr4_3:71594438-71594457 | Msa0660630:intron | 30.0% | |
| CACTGGTGTGAAAAATTCAT+AGG | - | chr4_3:71592855-71592874 | Msa0660630:CDS | 35.0% | |
| ! | TATCACTGATAGTGTTATCG+GGG | - | chr4_3:71593152-71593171 | Msa0660630:intron | 35.0% |
| AAATCTTCCATTTAGTGGTC+GGG | - | chr4_3:71593316-71593335 | Msa0660630:intron | 35.0% | |
| ATACTTGATTCCTGTGGATT+TGG | - | chr4_3:71593441-71593460 | Msa0660630:CDS | 35.0% | |
| TTGTTGGATATTTCTTCAGC+TGG | - | chr4_3:71593503-71593522 | Msa0660630:intron | 35.0% | |
| TATGGATCCTAAACCTAAAG+TGG | + | chr4_3:71593551-71593570 | None:intergenic | 35.0% | |
| ATGACAGATTAAGGCTCATA+TGG | + | chr4_3:71593569-71593588 | None:intergenic | 35.0% | |
| CAATGCAGTATGACAGATTA+AGG | + | chr4_3:71593578-71593597 | None:intergenic | 35.0% | |
| CTTAATCTGTCATACTGCAT+TGG | - | chr4_3:71593576-71593595 | Msa0660630:intron | 35.0% | |
| ACATACATGTACTGTTAGCT+AGG | - | chr4_3:71593683-71593702 | Msa0660630:intron | 35.0% | |
| ACTGTTAGCTAGGTCATTAA+TGG | - | chr4_3:71593693-71593712 | Msa0660630:intron | 35.0% | |
| !! | GTATTTGGTGCAGAAAATTC+AGG | - | chr4_3:71593788-71593807 | Msa0660630:CDS | 35.0% |
| TAACAAAGAGAACCTCTCTA+GGG | + | chr4_3:71593847-71593866 | None:intergenic | 35.0% | |
| ATAACAAAGAGAACCTCTCT+AGG | + | chr4_3:71593848-71593867 | None:intergenic | 35.0% | |
| !! | GGTTCTCTTTGTTATTCAGA+AGG | - | chr4_3:71593853-71593872 | Msa0660630:CDS | 35.0% |
| ! | AAACCATATGCATTTTCTCC+TGG | - | chr4_3:71593878-71593897 | Msa0660630:CDS | 35.0% |
| TCAGTGCGAAGTAAATTATC+AGG | - | chr4_3:71594405-71594424 | Msa0660630:intron | 35.0% | |
| ! | ATGGTTGTGTAATAACTTGC+TGG | - | chr4_3:71594491-71594510 | Msa0660630:intron | 35.0% |
| !!! | CTTTGTTTTCAACAACAGCT+TGG | - | chr4_3:71594524-71594543 | Msa0660630:CDS | 35.0% |
| CACTGGTGTGAAAAATTCAT+AGG | - | chr4_3:71592855-71592874 | Msa0660630:CDS | 35.0% | |
| ! | TATCACTGATAGTGTTATCG+GGG | - | chr4_3:71593152-71593171 | Msa0660630:intron | 35.0% |
| AAATCTTCCATTTAGTGGTC+GGG | - | chr4_3:71593316-71593335 | Msa0660630:intron | 35.0% | |
| ATACTTGATTCCTGTGGATT+TGG | - | chr4_3:71593441-71593460 | Msa0660630:CDS | 35.0% | |
| TTGTTGGATATTTCTTCAGC+TGG | - | chr4_3:71593503-71593522 | Msa0660630:intron | 35.0% | |
| TATGGATCCTAAACCTAAAG+TGG | + | chr4_3:71593551-71593570 | None:intergenic | 35.0% | |
| ATGACAGATTAAGGCTCATA+TGG | + | chr4_3:71593569-71593588 | None:intergenic | 35.0% | |
| CAATGCAGTATGACAGATTA+AGG | + | chr4_3:71593578-71593597 | None:intergenic | 35.0% | |
| CTTAATCTGTCATACTGCAT+TGG | - | chr4_3:71593576-71593595 | Msa0660630:intron | 35.0% | |
| ACATACATGTACTGTTAGCT+AGG | - | chr4_3:71593683-71593702 | Msa0660630:intron | 35.0% | |
| ACTGTTAGCTAGGTCATTAA+TGG | - | chr4_3:71593693-71593712 | Msa0660630:intron | 35.0% | |
| !! | GTATTTGGTGCAGAAAATTC+AGG | - | chr4_3:71593788-71593807 | Msa0660630:CDS | 35.0% |
| TAACAAAGAGAACCTCTCTA+GGG | + | chr4_3:71593847-71593866 | None:intergenic | 35.0% | |
| ATAACAAAGAGAACCTCTCT+AGG | + | chr4_3:71593848-71593867 | None:intergenic | 35.0% | |
| !! | GGTTCTCTTTGTTATTCAGA+AGG | - | chr4_3:71593853-71593872 | Msa0660630:CDS | 35.0% |
| ! | AAACCATATGCATTTTCTCC+TGG | - | chr4_3:71593878-71593897 | Msa0660630:CDS | 35.0% |
| TCAGTGCGAAGTAAATTATC+AGG | - | chr4_3:71594405-71594424 | Msa0660630:intron | 35.0% | |
| ! | ATGGTTGTGTAATAACTTGC+TGG | - | chr4_3:71594491-71594510 | Msa0660630:intron | 35.0% |
| !!! | CTTTGTTTTCAACAACAGCT+TGG | - | chr4_3:71594524-71594543 | Msa0660630:CDS | 35.0% |
| CTTAAATCTCAGGAAGACAC+TGG | - | chr4_3:71592838-71592857 | Msa0660630:CDS | 40.0% | |
| CAATGATACCAATGTCTTCC+CGG | + | chr4_3:71592906-71592925 | None:intergenic | 40.0% | |
| GGAAGACATTGGTATCATTG+AGG | - | chr4_3:71592906-71592925 | Msa0660630:CDS | 40.0% | |
| ! | GAAGTCAGGTACATGCTTTT+TGG | + | chr4_3:71592959-71592978 | None:intergenic | 40.0% |
| ! | AAAAGCATGTACCTGACTTC+AGG | - | chr4_3:71592959-71592978 | Msa0660630:intron | 40.0% |
| !! | TGCACTTTATGAGAGCATCT+TGG | - | chr4_3:71593029-71593048 | Msa0660630:intron | 40.0% |
| !! | TTATGAGAGCATCTTGGTCA+TGG | - | chr4_3:71593035-71593054 | Msa0660630:intron | 40.0% |
| TCAACATCAAGCATCTTCGA+CGG | + | chr4_3:71593132-71593151 | None:intergenic | 40.0% | |
| !! | GTCATACTGCATTGGTTTCT+TGG | - | chr4_3:71593584-71593603 | Msa0660630:intron | 40.0% |
| AAAAGGACTAAGGATTGCCT+CGG | + | chr4_3:71593626-71593645 | None:intergenic | 40.0% | |
| ! | AGGCAATCCTTAGTCCTTTT+TGG | - | chr4_3:71593626-71593645 | Msa0660630:intron | 40.0% |
| CAGTACATGTATGTGAAAGG+TGG | + | chr4_3:71593677-71593696 | None:intergenic | 40.0% | |
| GTCATTAATGGTCATGCTTG+TGG | - | chr4_3:71593705-71593724 | Msa0660630:intron | 40.0% | |
| CTTCCAGGAGAAAATGCATA+TGG | + | chr4_3:71593884-71593903 | None:intergenic | 40.0% | |
| CAAATCAAGCTTGGAGTTCT+TGG | - | chr4_3:71593925-71593944 | Msa0660630:CDS | 40.0% | |
| GAGTTCTTGGCTTATCTAGA+AGG | - | chr4_3:71593938-71593957 | Msa0660630:intron | 40.0% | |
| CTCATATCTTCAATTGCCTC+AGG | - | chr4_3:71594311-71594330 | Msa0660630:CDS | 40.0% | |
| TCAGGTTTCAGGAAATAGCA+GGG | - | chr4_3:71594329-71594348 | Msa0660630:CDS | 40.0% | |
| ! | ATTTTGAACGGGGACAAGAT+TGG | + | chr4_3:71594380-71594399 | None:intergenic | 40.0% |
| !! | TTGTGTAATAACTTGCTGGC+AGG | - | chr4_3:71594495-71594514 | Msa0660630:CDS | 40.0% |
| CTTAAATCTCAGGAAGACAC+TGG | - | chr4_3:71592838-71592857 | Msa0660630:CDS | 40.0% | |
| CAATGATACCAATGTCTTCC+CGG | + | chr4_3:71592906-71592925 | None:intergenic | 40.0% | |
| GGAAGACATTGGTATCATTG+AGG | - | chr4_3:71592906-71592925 | Msa0660630:CDS | 40.0% | |
| ! | GAAGTCAGGTACATGCTTTT+TGG | + | chr4_3:71592959-71592978 | None:intergenic | 40.0% |
| ! | AAAAGCATGTACCTGACTTC+AGG | - | chr4_3:71592959-71592978 | Msa0660630:intron | 40.0% |
| !! | TGCACTTTATGAGAGCATCT+TGG | - | chr4_3:71593029-71593048 | Msa0660630:intron | 40.0% |
| !! | TTATGAGAGCATCTTGGTCA+TGG | - | chr4_3:71593035-71593054 | Msa0660630:intron | 40.0% |
| TCAACATCAAGCATCTTCGA+CGG | + | chr4_3:71593132-71593151 | None:intergenic | 40.0% | |
| !! | GTCATACTGCATTGGTTTCT+TGG | - | chr4_3:71593584-71593603 | Msa0660630:intron | 40.0% |
| AAAAGGACTAAGGATTGCCT+CGG | + | chr4_3:71593626-71593645 | None:intergenic | 40.0% | |
| ! | AGGCAATCCTTAGTCCTTTT+TGG | - | chr4_3:71593626-71593645 | Msa0660630:intron | 40.0% |
| CAGTACATGTATGTGAAAGG+TGG | + | chr4_3:71593677-71593696 | None:intergenic | 40.0% | |
| GTCATTAATGGTCATGCTTG+TGG | - | chr4_3:71593705-71593724 | Msa0660630:intron | 40.0% | |
| CTTCCAGGAGAAAATGCATA+TGG | + | chr4_3:71593884-71593903 | None:intergenic | 40.0% | |
| CAAATCAAGCTTGGAGTTCT+TGG | - | chr4_3:71593925-71593944 | Msa0660630:CDS | 40.0% | |
| GAGTTCTTGGCTTATCTAGA+AGG | - | chr4_3:71593938-71593957 | Msa0660630:intron | 40.0% | |
| CTCATATCTTCAATTGCCTC+AGG | - | chr4_3:71594311-71594330 | Msa0660630:CDS | 40.0% | |
| TCAGGTTTCAGGAAATAGCA+GGG | - | chr4_3:71594329-71594348 | Msa0660630:CDS | 40.0% | |
| ! | ATTTTGAACGGGGACAAGAT+TGG | + | chr4_3:71594380-71594399 | None:intergenic | 40.0% |
| !! | TTGTGTAATAACTTGCTGGC+AGG | - | chr4_3:71594495-71594514 | Msa0660630:CDS | 40.0% |
| ! | CATCTTGGTCATGGTGTCAA+TGG | - | chr4_3:71593044-71593063 | Msa0660630:intron | 45.0% |
| TATCGCGGTTGAGTGTAAAC+TGG | + | chr4_3:71593102-71593121 | None:intergenic | 45.0% | |
| ! | ACTGATAGTGTTATCGGGGA+AGG | - | chr4_3:71593156-71593175 | Msa0660630:intron | 45.0% |
| AGGGACTTTACCAAATCCAC+AGG | + | chr4_3:71593454-71593473 | None:intergenic | 45.0% | |
| TGCTAATCCAATCCCTAGAG+AGG | - | chr4_3:71593832-71593851 | Msa0660630:CDS | 45.0% | |
| ! | AAGAGAACCTCTCTAGGGAT+TGG | + | chr4_3:71593842-71593861 | None:intergenic | 45.0% |
| ! | TTCAAGAACTCTGGTCTTCC+AGG | + | chr4_3:71593899-71593918 | None:intergenic | 45.0% |
| CTTCAATTGCCTCAGGTTTC+AGG | - | chr4_3:71594318-71594337 | Msa0660630:CDS | 45.0% | |
| !! | CTGCTATTTCCTGAAACCTG+AGG | + | chr4_3:71594330-71594349 | None:intergenic | 45.0% |
| CTCAGGTTTCAGGAAATAGC+AGG | - | chr4_3:71594328-71594347 | Msa0660630:CDS | 45.0% | |
| ! | TGGAGAGTTTGAGATTGTGC+TGG | - | chr4_3:71594458-71594477 | Msa0660630:intron | 45.0% |
| TTGAGATTGTGCTGGAGAGA+AGG | - | chr4_3:71594466-71594485 | Msa0660630:intron | 45.0% | |
| TTGTGCTGGAGAGAAGGAAA+TGG | - | chr4_3:71594472-71594491 | Msa0660630:intron | 45.0% | |
| !! | TAATAACTTGCTGGCAGGAC+AGG | - | chr4_3:71594500-71594519 | Msa0660630:CDS | 45.0% |
| ! | CATCTTGGTCATGGTGTCAA+TGG | - | chr4_3:71593044-71593063 | Msa0660630:intron | 45.0% |
| TATCGCGGTTGAGTGTAAAC+TGG | + | chr4_3:71593102-71593121 | None:intergenic | 45.0% | |
| ! | ACTGATAGTGTTATCGGGGA+AGG | - | chr4_3:71593156-71593175 | Msa0660630:intron | 45.0% |
| AGGGACTTTACCAAATCCAC+AGG | + | chr4_3:71593454-71593473 | None:intergenic | 45.0% | |
| TGCTAATCCAATCCCTAGAG+AGG | - | chr4_3:71593832-71593851 | Msa0660630:CDS | 45.0% | |
| ! | AAGAGAACCTCTCTAGGGAT+TGG | + | chr4_3:71593842-71593861 | None:intergenic | 45.0% |
| ! | TTCAAGAACTCTGGTCTTCC+AGG | + | chr4_3:71593899-71593918 | None:intergenic | 45.0% |
| CTTCAATTGCCTCAGGTTTC+AGG | - | chr4_3:71594318-71594337 | Msa0660630:CDS | 45.0% | |
| !! | CTGCTATTTCCTGAAACCTG+AGG | + | chr4_3:71594330-71594349 | None:intergenic | 45.0% |
| CTCAGGTTTCAGGAAATAGC+AGG | - | chr4_3:71594328-71594347 | Msa0660630:CDS | 45.0% | |
| ! | TGGAGAGTTTGAGATTGTGC+TGG | - | chr4_3:71594458-71594477 | Msa0660630:intron | 45.0% |
| TTGAGATTGTGCTGGAGAGA+AGG | - | chr4_3:71594466-71594485 | Msa0660630:intron | 45.0% | |
| TTGTGCTGGAGAGAAGGAAA+TGG | - | chr4_3:71594472-71594491 | Msa0660630:intron | 45.0% | |
| !! | TAATAACTTGCTGGCAGGAC+AGG | - | chr4_3:71594500-71594519 | Msa0660630:CDS | 45.0% |
| TATGGCTACCGGGAAGACAT+TGG | - | chr4_3:71592895-71592914 | Msa0660630:CDS | 50.0% | |
| ACATCAAGCATCTTCGACGG+AGG | + | chr4_3:71593129-71593148 | None:intergenic | 50.0% | |
| CGGGGAAGGATGTGCAATTA+AGG | - | chr4_3:71593170-71593189 | Msa0660630:intron | 50.0% | |
| ! | GGACGTATAGTAGCCTTGCA+TGG | + | chr4_3:71594135-71594154 | None:intergenic | 50.0% |
| CAACAACAGCTTGGAGAGCT+AGG | - | chr4_3:71594533-71594552 | Msa0660630:CDS | 50.0% | |
| TATGGCTACCGGGAAGACAT+TGG | - | chr4_3:71592895-71592914 | Msa0660630:CDS | 50.0% | |
| ACATCAAGCATCTTCGACGG+AGG | + | chr4_3:71593129-71593148 | None:intergenic | 50.0% | |
| CGGGGAAGGATGTGCAATTA+AGG | - | chr4_3:71593170-71593189 | Msa0660630:intron | 50.0% | |
| ! | GGACGTATAGTAGCCTTGCA+TGG | + | chr4_3:71594135-71594154 | None:intergenic | 50.0% |
| CAACAACAGCTTGGAGAGCT+AGG | - | chr4_3:71594533-71594552 | Msa0660630:CDS | 50.0% | |
| ! | TTCGACGGAGGCAAGTATCG+CGG | + | chr4_3:71593117-71593136 | None:intergenic | 55.0% |
| ACTGCAGCCCGACCACTAAA+TGG | + | chr4_3:71593326-71593345 | None:intergenic | 55.0% | |
| GACCATGTCAGTACTTGCCG+AGG | - | chr4_3:71593606-71593625 | Msa0660630:intron | 55.0% | |
| !! | TGCCTCGGCAAGTACTGACA+TGG | + | chr4_3:71593611-71593630 | None:intergenic | 55.0% |
| ! | TTCGACGGAGGCAAGTATCG+CGG | + | chr4_3:71593117-71593136 | None:intergenic | 55.0% |
| ACTGCAGCCCGACCACTAAA+TGG | + | chr4_3:71593326-71593345 | None:intergenic | 55.0% | |
| GACCATGTCAGTACTTGCCG+AGG | - | chr4_3:71593606-71593625 | Msa0660630:intron | 55.0% | |
| !! | TGCCTCGGCAAGTACTGACA+TGG | + | chr4_3:71593611-71593630 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 71592701 | 71594561 | 71592701 | ID=Msa0660630;Name=Msa0660630 |
| chr4_3 | mRNA | 71592701 | 71594561 | 71592701 | ID=Msa0660630-mRNA-1;Parent=Msa0660630;Name=Msa0660630-mRNA-1;_AED=0.27;_eAED=0.29;_QI=0|0|0|0.83|0.6|0.5|6|0|239 |
| chr4_3 | exon | 71594492 | 71594561 | 71594492 | ID=Msa0660630-mRNA-1:exon:21460;Parent=Msa0660630-mRNA-1 |
| chr4_3 | exon | 71594282 | 71594351 | 71594282 | ID=Msa0660630-mRNA-1:exon:21459;Parent=Msa0660630-mRNA-1 |
| chr4_3 | exon | 71594071 | 71594182 | 71594071 | ID=Msa0660630-mRNA-1:exon:21458;Parent=Msa0660630-mRNA-1 |
| chr4_3 | exon | 71593768 | 71593953 | 71593768 | ID=Msa0660630-mRNA-1:exon:21457;Parent=Msa0660630-mRNA-1 |
| chr4_3 | exon | 71593409 | 71593461 | 71593409 | ID=Msa0660630-mRNA-1:exon:21456;Parent=Msa0660630-mRNA-1 |
| chr4_3 | exon | 71592701 | 71592929 | 71592701 | ID=Msa0660630-mRNA-1:exon:21455;Parent=Msa0660630-mRNA-1 |
| chr4_3 | CDS | 71594492 | 71594561 | 71594492 | ID=Msa0660630-mRNA-1:cds;Parent=Msa0660630-mRNA-1 |
| chr4_3 | CDS | 71594282 | 71594351 | 71594282 | ID=Msa0660630-mRNA-1:cds;Parent=Msa0660630-mRNA-1 |
| chr4_3 | CDS | 71594071 | 71594182 | 71594071 | ID=Msa0660630-mRNA-1:cds;Parent=Msa0660630-mRNA-1 |
| chr4_3 | CDS | 71593768 | 71593953 | 71593768 | ID=Msa0660630-mRNA-1:cds;Parent=Msa0660630-mRNA-1 |
| chr4_3 | CDS | 71593409 | 71593461 | 71593409 | ID=Msa0660630-mRNA-1:cds;Parent=Msa0660630-mRNA-1 |
| chr4_3 | CDS | 71592701 | 71592929 | 71592701 | ID=Msa0660630-mRNA-1:cds;Parent=Msa0660630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
