Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660940 | XP_003597529.1 | 97.912 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 0.0 | 862 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660940 | sp|Q04088|POF21_ARATH | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.02e-150 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660940 | G7IHV8 | 97.912 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 0.0 | 862 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0660940 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660940 | MtrunA17_Chr2g0329551 | 97.912 | 431 | 7 | 1 | 1 | 431 | 1 | 429 | 0.0 | 862 |
| Msa0660940 | MtrunA17_Chr3g0107491 | 45.402 | 348 | 141 | 10 | 72 | 406 | 38 | 349 | 3.26e-66 | 216 |
| Msa0660940 | MtrunA17_Chr5g0432701 | 52.549 | 255 | 68 | 9 | 72 | 320 | 51 | 258 | 8.96e-65 | 212 |
| Msa0660940 | MtrunA17_Chr3g0128781 | 43.796 | 274 | 80 | 8 | 72 | 335 | 7 | 216 | 6.07e-51 | 174 |
| Msa0660940 | MtrunA17_Chr4g0036071 | 44.318 | 264 | 88 | 8 | 109 | 323 | 213 | 466 | 3.38e-49 | 174 |
| Msa0660940 | MtrunA17_Chr6g0463571 | 42.532 | 308 | 122 | 12 | 66 | 366 | 22 | 281 | 8.73e-48 | 166 |
| Msa0660940 | MtrunA17_Chr1g0156051 | 59.712 | 139 | 53 | 2 | 176 | 313 | 343 | 479 | 2.17e-32 | 129 |
| Msa0660940 | MtrunA17_Chr2g0316551 | 37.821 | 156 | 82 | 2 | 219 | 374 | 206 | 346 | 2.13e-20 | 92.0 |
| Msa0660940 | MtrunA17_Chr2g0325131 | 45.614 | 114 | 57 | 2 | 219 | 327 | 189 | 302 | 1.48e-19 | 89.4 |
| Msa0660940 | MtrunA17_Chr4g0040891 | 46.000 | 100 | 54 | 0 | 219 | 318 | 192 | 291 | 8.30e-19 | 87.0 |
| Msa0660940 | MtrunA17_Chr1g0202051 | 36.697 | 109 | 69 | 0 | 206 | 314 | 109 | 217 | 2.65e-13 | 70.1 |
| Msa0660940 | MtrunA17_Chr8g0380611 | 27.341 | 267 | 158 | 6 | 58 | 313 | 80 | 321 | 2.66e-12 | 68.2 |
| Msa0660940 | MtrunA17_Chr2g0306581 | 63.265 | 49 | 18 | 0 | 209 | 257 | 1 | 49 | 2.93e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660940 | AT1G06070.1 | 73.810 | 336 | 69 | 6 | 19 | 352 | 21 | 339 | 3.64e-168 | 479 |
| Msa0660940 | AT2G31370.5 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 6.84e-152 | 436 |
| Msa0660940 | AT2G31370.2 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0660940 | AT2G31370.4 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0660940 | AT2G31370.1 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0660940 | AT2G31370.7 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0660940 | AT2G31370.3 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0660940 | AT2G31370.6 | 66.301 | 365 | 92 | 10 | 1 | 361 | 1 | 338 | 2.05e-151 | 435 |
| Msa0660940 | AT2G40620.1 | 49.231 | 260 | 95 | 7 | 66 | 324 | 28 | 251 | 2.15e-61 | 203 |
| Msa0660940 | AT1G43700.1 | 49.746 | 197 | 90 | 3 | 161 | 348 | 129 | 325 | 2.14e-49 | 171 |
| Msa0660940 | AT1G06850.1 | 52.459 | 183 | 61 | 2 | 204 | 360 | 131 | 313 | 4.19e-48 | 167 |
| Msa0660940 | AT4G38900.2 | 67.769 | 121 | 39 | 0 | 199 | 319 | 372 | 492 | 1.22e-45 | 166 |
| Msa0660940 | AT4G38900.3 | 67.769 | 121 | 39 | 0 | 199 | 319 | 372 | 492 | 1.22e-45 | 166 |
| Msa0660940 | AT4G38900.1 | 41.328 | 271 | 99 | 7 | 109 | 319 | 228 | 498 | 3.54e-43 | 159 |
| Msa0660940 | AT2G21230.4 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.31e-42 | 157 |
| Msa0660940 | AT2G21230.1 | 63.415 | 123 | 45 | 0 | 196 | 318 | 345 | 467 | 1.31e-42 | 157 |
| Msa0660940 | AT2G21230.3 | 59.690 | 129 | 46 | 1 | 196 | 318 | 345 | 473 | 1.39e-39 | 149 |
| Msa0660940 | AT2G21230.2 | 65.421 | 107 | 37 | 0 | 196 | 302 | 345 | 451 | 6.78e-37 | 140 |
| Msa0660940 | AT1G06850.2 | 76.712 | 73 | 17 | 0 | 204 | 276 | 131 | 203 | 8.33e-27 | 107 |
| Msa0660940 | AT2G42380.2 | 47.000 | 100 | 53 | 0 | 219 | 318 | 184 | 283 | 5.76e-20 | 90.5 |
| Msa0660940 | AT3G58120.1 | 47.959 | 98 | 51 | 0 | 221 | 318 | 202 | 299 | 1.01e-19 | 90.1 |
| Msa0660940 | AT2G12900.1 | 34.109 | 129 | 77 | 1 | 196 | 316 | 83 | 211 | 1.37e-18 | 85.5 |
| Msa0660940 | AT2G42380.5 | 47.619 | 84 | 44 | 0 | 219 | 302 | 184 | 267 | 3.48e-17 | 81.6 |
| Msa0660940 | AT3G58120.2 | 49.367 | 79 | 40 | 0 | 221 | 299 | 202 | 280 | 4.64e-16 | 78.6 |
| Msa0660940 | AT2G13150.1 | 37.615 | 109 | 67 | 1 | 207 | 315 | 136 | 243 | 6.18e-16 | 77.8 |
| Msa0660940 | AT2G12940.1 | 34.188 | 117 | 76 | 1 | 197 | 313 | 125 | 240 | 3.02e-15 | 76.3 |
| Msa0660940 | AT2G42380.1 | 42.000 | 100 | 47 | 1 | 219 | 318 | 184 | 272 | 1.29e-13 | 71.6 |
| Msa0660940 | AT2G21235.1 | 43.678 | 87 | 49 | 0 | 221 | 307 | 359 | 445 | 3.34e-13 | 72.0 |
| Msa0660940 | AT1G58110.1 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.21e-11 | 66.2 |
| Msa0660940 | AT1G58110.2 | 41.860 | 86 | 50 | 0 | 230 | 315 | 238 | 323 | 1.21e-11 | 66.2 |
| Msa0660940 | AT2G42380.3 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.67e-11 | 62.4 |
| Msa0660940 | AT2G42380.4 | 60.000 | 45 | 18 | 0 | 219 | 263 | 184 | 228 | 7.67e-11 | 62.4 |
Find 149 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTGCTGGTGTCTGATTC+TGG | 0.087788 | 4_3:+72064405 | None:intergenic |
| CTTAGAGTTGTTTAGGATTA+AGG | 0.155461 | 4_3:-72064950 | Msa0660940:five_prime_UTR |
| TTCCCTTTCTCTCTATTTCT+AGG | 0.189628 | 4_3:-72065245 | Msa0660940:five_prime_UTR |
| CCTATGAACTTTAATTCTTT+TGG | 0.197858 | 4_3:-72061994 | Msa0660940:CDS |
| TTCTTGGCACCTCAGTTAAT+TGG | 0.229412 | 4_3:-72061511 | Msa0660940:three_prime_UTR |
| GCTGTTTCTGAGGATGAATT+TGG | 0.240472 | 4_3:+72061896 | None:intergenic |
| AATGGAAAAGGACAAATCTT+TGG | 0.246887 | 4_3:-72064920 | Msa0660940:CDS |
| ATCTGATGAAGGATTATCTT+TGG | 0.251730 | 4_3:+72061726 | None:intergenic |
| CCATGCCATGCACACTCTTT+TGG | 0.268695 | 4_3:-72061941 | Msa0660940:CDS |
| GTGATTGCTTAGAGTTGTTT+AGG | 0.272957 | 4_3:-72064957 | Msa0660940:five_prime_UTR |
| GTGCATGGCATGGTTATTAT+TGG | 0.277488 | 4_3:+72061951 | None:intergenic |
| TCAGGAGGAGGTACCTCTTC+TGG | 0.279881 | 4_3:-72064463 | Msa0660940:CDS |
| TGTATAATACTAAAATTTCT+TGG | 0.284037 | 4_3:-72061527 | Msa0660940:three_prime_UTR |
| CTAGAATCTGAGCTGGTTCC+AGG | 0.284646 | 4_3:+72064784 | None:intergenic |
| TTCCGAGATTCTTACCTTGC+CGG | 0.302193 | 4_3:-72064692 | Msa0660940:CDS |
| ACCTTTGCGCCGCGTAGATC+AGG | 0.306683 | 4_3:+72065193 | None:intergenic |
| ACCTCCATCAGGACGTTATC+CGG | 0.323576 | 4_3:-72064878 | Msa0660940:CDS |
| TACCTCTTCTGGGGAAAATA+TGG | 0.331870 | 4_3:-72064452 | Msa0660940:CDS |
| TCTGATGAAGGATTATCTTT+GGG | 0.340833 | 4_3:+72061727 | None:intergenic |
| CTGTGCTGGTGTCTGATTCT+GGG | 0.348924 | 4_3:+72064406 | None:intergenic |
| ACAAATGCAGCAGCAGCAGC+AGG | 0.359774 | 4_3:-72061806 | Msa0660940:CDS |
| TTTGTTGCTGCTGTATTTGT+TGG | 0.370991 | 4_3:+72061839 | None:intergenic |
| TGCACAGTTAACTCTCTTAC+AGG | 0.371836 | 4_3:-72062714 | Msa0660940:intron |
| TTGTTGATTGAGATGGTATA+GGG | 0.373709 | 4_3:-72061431 | Msa0660940:three_prime_UTR |
| CAGGAGGAGGTACCTCTTCT+GGG | 0.381898 | 4_3:-72064462 | Msa0660940:CDS |
| GTTGTCCATGTACCTTGATA+TGG | 0.382193 | 4_3:-72064587 | Msa0660940:CDS |
| CGCAGTTTCTCAACAATCCT+TGG | 0.383849 | 4_3:+72061687 | None:intergenic |
| TCGTATCCGCCGCTTGCTCC+TGG | 0.385842 | 4_3:-72064802 | Msa0660940:CDS |
| TTTGTTGATTGAGATGGTAT+AGG | 0.386419 | 4_3:-72061432 | Msa0660940:three_prime_UTR |
| GTCTAATGCTGCCGGAGCAT+CGG | 0.391354 | 4_3:-72064515 | Msa0660940:CDS |
| ATGGAAAAGGACAAATCTTT+GGG | 0.392509 | 4_3:-72064919 | Msa0660940:CDS |
| TGCTGCCGGAGCATCGGGTT+TGG | 0.393129 | 4_3:-72064509 | Msa0660940:CDS |
| AAACAATAGTACCAACTGTA+TGG | 0.395953 | 4_3:-72065376 | None:intergenic |
| CGGAATGAAGAGAGAGAAAG+TGG | 0.396602 | 4_3:+72065277 | None:intergenic |
| TCCCTTTCTCTCTATTTCTA+GGG | 0.403424 | 4_3:-72065244 | Msa0660940:five_prime_UTR |
| CATCCATGGACTGGCTGTGC+TGG | 0.409055 | 4_3:+72064392 | None:intergenic |
| AAGGACAAATCTTTGGGTCT+TGG | 0.416966 | 4_3:-72064913 | Msa0660940:CDS |
| TAGGATTAAGGAATCTTCAA+TGG | 0.417963 | 4_3:-72064938 | Msa0660940:exon |
| GGAGCAACAAGTTCACTTGC+AGG | 0.420631 | 4_3:-72062509 | Msa0660940:CDS |
| TCTAATGCTGCCGGAGCATC+GGG | 0.422071 | 4_3:-72064514 | Msa0660940:CDS |
| TTGACCCCAAGCGTGCAAAA+AGG | 0.430308 | 4_3:-72064261 | Msa0660940:intron |
| CAAGGCAAGTTCTGCAAGCT+TGG | 0.432209 | 4_3:+72064285 | None:intergenic |
| AACCCTAGAAATAGAGAGAA+AGG | 0.437708 | 4_3:+72065242 | None:intergenic |
| TGCACGCTTGGGGTCAATCA+AGG | 0.439782 | 4_3:+72064267 | None:intergenic |
| GTTTGATTCGTTGACGAGAA+TGG | 0.440805 | 4_3:-72065353 | Msa0660940:five_prime_UTR |
| TAAGGAATCTTCAATGGAAA+AGG | 0.443828 | 4_3:-72064932 | Msa0660940:exon |
| GAGAAAGGGAAAATGAATAT+CGG | 0.443981 | 4_3:+72065257 | None:intergenic |
| TTTAAATGACGCGTTAAAAG+AGG | 0.453730 | 4_3:-72062070 | Msa0660940:CDS |
| TATCCGGGTTATTCACCAAC+TGG | 0.455335 | 4_3:-72064862 | Msa0660940:CDS |
| GTAACAGGATATGGGCAAAT+AGG | 0.455791 | 4_3:-72062832 | Msa0660940:intron |
| CAAGTGAACTTGTTGCTCCA+TGG | 0.458049 | 4_3:+72062513 | None:intergenic |
| TGCATGGCATGGTTATTATT+GGG | 0.461227 | 4_3:+72061952 | None:intergenic |
| ATTTGTGTGTAACAGGATAT+GGG | 0.465089 | 4_3:-72062840 | Msa0660940:intron |
| GTTTACTTTGTTGATTGAGA+TGG | 0.465856 | 4_3:-72061438 | Msa0660940:three_prime_UTR |
| AAATCTTTGGGTCTTGGCGG+TGG | 0.466838 | 4_3:-72064907 | Msa0660940:CDS |
| GGCTATGAATATATCAATGT+AGG | 0.467004 | 4_3:-72061490 | Msa0660940:three_prime_UTR |
| TGGCGCCAAACCCGATGCTC+CGG | 0.468192 | 4_3:+72064504 | None:intergenic |
| GTAGATCAGGGGAGATAGAT+TGG | 0.469223 | 4_3:+72065206 | None:intergenic |
| GACAAATCTTTGGGTCTTGG+CGG | 0.471518 | 4_3:-72064910 | Msa0660940:CDS |
| CAAACCTGAGATGTTAATCT+CGG | 0.472947 | 4_3:-72064356 | Msa0660940:CDS |
| TTCATCAGATGTAAATCCTT+CGG | 0.478143 | 4_3:-72061713 | Msa0660940:CDS |
| AAGTTCATAGGTCCTCCATT+TGG | 0.480765 | 4_3:+72062006 | None:intergenic |
| CCAAAAGAATTAAAGTTCAT+AGG | 0.483391 | 4_3:+72061994 | None:intergenic |
| CGTCTATGACCTCTATTTCT+CGG | 0.485976 | 4_3:+72064721 | None:intergenic |
| CCTTTGCGCCGCGTAGATCA+GGG | 0.489306 | 4_3:+72065194 | None:intergenic |
| GCGGCGGATACGACGATGAT+GGG | 0.489367 | 4_3:+72064812 | None:intergenic |
| GGTTATTCACCAACTGGAAG+TGG | 0.489501 | 4_3:-72064856 | Msa0660940:CDS |
| GGGCAAGCTATGCCGCCAAA+TGG | 0.498892 | 4_3:-72062021 | Msa0660940:CDS |
| GGTGTAGTTGGTGGTGCTGA+TGG | 0.502800 | 4_3:-72064643 | Msa0660940:CDS |
| CTTGGTGTCCTAGTGTTGGT+AGG | 0.502821 | 4_3:-72061633 | Msa0660940:three_prime_UTR |
| GAAGGATTTACATCTGATGA+AGG | 0.504672 | 4_3:+72061715 | None:intergenic |
| CGCATTTGAAAGTACTGACT+GGG | 0.505823 | 4_3:-72062041 | Msa0660940:CDS |
| GATAGTGACCTCGGTGTAGT+TGG | 0.507851 | 4_3:-72064655 | Msa0660940:CDS |
| AGCGGCGGATACGACGATGA+TGG | 0.508995 | 4_3:+72064811 | None:intergenic |
| TTCATAGGTCCTCCATTTGG+CGG | 0.509377 | 4_3:+72062009 | None:intergenic |
| CAGCACAGCCAGTCCATGGA+TGG | 0.510016 | 4_3:-72064391 | Msa0660940:CDS |
| CAACAATCCTTGGCTGCCGA+AGG | 0.516507 | 4_3:+72061697 | None:intergenic |
| CTATCAAAGCTAATATCATC+CGG | 0.517208 | 4_3:+72064673 | None:intergenic |
| GATTGTTGTTGACCCATCCA+TGG | 0.518412 | 4_3:+72064378 | None:intergenic |
| TATAGGAAGGGCAGTTGCTA+AGG | 0.518572 | 4_3:+72061405 | None:intergenic |
| CTTATCCATATCAAGGTACA+TGG | 0.520173 | 4_3:+72064582 | None:intergenic |
| ATGTCGGTAGGGCAGACATC+AGG | 0.524354 | 4_3:-72064481 | Msa0660940:CDS |
| GCTATATTGCTGAGCTTGAA+AGG | 0.525278 | 4_3:-72062775 | Msa0660940:CDS |
| CCTCCATCAGGACGTTATCC+GGG | 0.528655 | 4_3:-72064877 | Msa0660940:CDS |
| ATCGGGTTTGGCGCCAATGT+CGG | 0.530842 | 4_3:-72064497 | Msa0660940:CDS |
| GGTTTGGCGCCAATGTCGGT+AGG | 0.535811 | 4_3:-72064493 | Msa0660940:CDS |
| GATGTCTGCCCTACCGACAT+TGG | 0.538923 | 4_3:+72064484 | None:intergenic |
| ATCCGGCAAGGTAAGAATCT+CGG | 0.540794 | 4_3:+72064690 | None:intergenic |
| CTGCGGCAAGGTCAAAAGAA+AGG | 0.542300 | 4_3:-72062805 | Msa0660940:CDS |
| CATGGACAACAAATCTTCCT+CGG | 0.543636 | 4_3:+72064600 | None:intergenic |
| CCCTGATCTACGCGGCGCAA+AGG | 0.544257 | 4_3:-72065194 | Msa0660940:intron |
| GAAGGATTATCTTTGGGGCA+TGG | 0.547961 | 4_3:+72061733 | None:intergenic |
| AATTGAACTTATCCATATCA+AGG | 0.549561 | 4_3:+72064575 | None:intergenic |
| ACCCTAGAAATAGAGAGAAA+GGG | 0.550518 | 4_3:+72065243 | None:intergenic |
| TGTAAATCCTTCGGCAGCCA+AGG | 0.553319 | 4_3:-72061704 | Msa0660940:CDS |
| GCTATGAATATATCAATGTA+GGG | 0.556993 | 4_3:-72061489 | Msa0660940:three_prime_UTR |
| GAACCCGAGATTAACATCTC+AGG | 0.557523 | 4_3:+72064352 | None:intergenic |
| ACGCATTTGAAAGTACTGAC+TGG | 0.558522 | 4_3:-72062042 | Msa0660940:CDS |
| TTGTCTTGGTGTCCTAGTGT+TGG | 0.558889 | 4_3:-72061637 | Msa0660940:three_prime_UTR |
| ACACCAGCACAGCCAGTCCA+TGG | 0.559692 | 4_3:-72064395 | Msa0660940:CDS |
| GGTGAGGGGTCTAATGCTGC+CGG | 0.563134 | 4_3:-72064523 | Msa0660940:CDS |
| TTGTTGACCCATCCATGGAC+TGG | 0.565600 | 4_3:+72064383 | None:intergenic |
| GAAAGTGCAGACATTGCAAA+CGG | 0.566063 | 4_3:-72062753 | Msa0660940:CDS |
| AAACCTGAGATGTTAATCTC+GGG | 0.567313 | 4_3:-72064355 | Msa0660940:CDS |
| AACAATAGTACCAACTGTAT+GGG | 0.567890 | 4_3:-72065375 | None:intergenic |
| GATAATCCTCCGAGAAATAG+AGG | 0.571302 | 4_3:-72064730 | Msa0660940:CDS |
| TGATGTTGCTGCTGTTTCTG+AGG | 0.574585 | 4_3:+72061886 | None:intergenic |
| CAAGCTATGCCGCCAAATGG+AGG | 0.574883 | 4_3:-72062018 | Msa0660940:CDS |
| CTGATGAAGGATTATCTTTG+GGG | 0.574967 | 4_3:+72061728 | None:intergenic |
| CGGCGGATACGACGATGATG+GGG | 0.587072 | 4_3:+72064813 | None:intergenic |
| AAAGCCACTAGAATCTGAGC+TGG | 0.591242 | 4_3:+72064777 | None:intergenic |
| CCAAAAGAGTGTGCATGGCA+TGG | 0.592655 | 4_3:+72061941 | None:intergenic |
| CTTCCAGTTGGTGAATAACC+CGG | 0.596092 | 4_3:+72064859 | None:intergenic |
| GGATAACGTCCTGATGGAGG+TGG | 0.599011 | 4_3:+72064880 | None:intergenic |
| ATTAGCTTTGATAGTGACCT+CGG | 0.599687 | 4_3:-72064664 | Msa0660940:CDS |
| ACATTGAAACCACTTCCAGT+TGG | 0.606876 | 4_3:+72064847 | None:intergenic |
| TGCAGCCAAAAGAGTGTGCA+TGG | 0.611169 | 4_3:+72061936 | None:intergenic |
| AGTGACCTCGGTGTAGTTGG+TGG | 0.612819 | 4_3:-72064652 | Msa0660940:CDS |
| GTTTGGCGCCAATGTCGGTA+GGG | 0.616468 | 4_3:-72064492 | Msa0660940:CDS |
| ACGAATCAAACCCATACAGT+TGG | 0.616810 | 4_3:+72065365 | None:intergenic |
| AGCACAGCCAGTCCATGGAT+GGG | 0.619422 | 4_3:-72064390 | Msa0660940:CDS |
| GAGCTGGTTCCAGGAGCAAG+CGG | 0.619940 | 4_3:+72064793 | None:intergenic |
| GAAGCTGCGGTTGCAAACCA+TGG | 0.620439 | 4_3:-72062530 | Msa0660940:CDS |
| CAACAAGTTCACTTGCAGGA+TGG | 0.622286 | 4_3:-72062505 | Msa0660940:intron |
| TAACCCGGATAACGTCCTGA+TGG | 0.622648 | 4_3:+72064874 | None:intergenic |
| CTGGTTCCAGGAGCAAGCGG+CGG | 0.624878 | 4_3:+72064796 | None:intergenic |
| AAAGCTAATATCATCCGGCA+AGG | 0.625947 | 4_3:+72064678 | None:intergenic |
| CAAATAGGCAGTCTGCGGCA+AGG | 0.630192 | 4_3:-72062817 | Msa0660940:CDS |
| TCTGGGGAAAATATGGCAGT+CGG | 0.630934 | 4_3:-72064445 | Msa0660940:CDS |
| CCCGGATAACGTCCTGATGG+AGG | 0.636399 | 4_3:+72064877 | None:intergenic |
| TCGGTAGGGCAGACATCAGG+AGG | 0.636796 | 4_3:-72064478 | Msa0660940:CDS |
| GGCTGCAACCTACCAACACT+AGG | 0.637292 | 4_3:+72061625 | None:intergenic |
| CAGTCGGTACTACAAATGAA+AGG | 0.639281 | 4_3:-72064429 | Msa0660940:CDS |
| CTTTGCGCCGCGTAGATCAG+GGG | 0.647338 | 4_3:+72065195 | None:intergenic |
| GGAACCAGCTCAGATTCTAG+TGG | 0.650014 | 4_3:-72064781 | Msa0660940:CDS |
| GGATTATCTTTGGGGCATGG+AGG | 0.651440 | 4_3:+72061736 | None:intergenic |
| AGGAGGAGGTACCTCTTCTG+GGG | 0.666286 | 4_3:-72064461 | Msa0660940:CDS |
| ATGAACAGAGAGATACAAGT+GGG | 0.666459 | 4_3:-72062576 | Msa0660940:intron |
| GTAGGGCAGACATCAGGAGG+AGG | 0.666831 | 4_3:-72064475 | Msa0660940:CDS |
| CTATGACCTCTATTTCTCGG+AGG | 0.675680 | 4_3:+72064724 | None:intergenic |
| ATGGGCAAATAGGCAGTCTG+CGG | 0.682103 | 4_3:-72062822 | Msa0660940:CDS |
| AGAACAGTGAGCTGAAGCTG+CGG | 0.689015 | 4_3:-72062543 | Msa0660940:CDS |
| GTCGTTCTCTGATGATACCG+AGG | 0.690738 | 4_3:-72064617 | Msa0660940:CDS |
| TATGAACAGAGAGATACAAG+TGG | 0.694542 | 4_3:-72062577 | Msa0660940:intron |
| GGCGGATACGACGATGATGG+GGG | 0.706397 | 4_3:+72064814 | None:intergenic |
| TATTCATAGCCAATTAACTG+AGG | 0.714934 | 4_3:+72061502 | None:intergenic |
| TCTATCTCCCCTGATCTACG+CGG | 0.750401 | 4_3:-72065202 | Msa0660940:five_prime_UTR |
| TCGGTATCATCAGAGAACGA+CGG | 0.752661 | 4_3:+72064619 | None:intergenic |
| CAGCACCACCAACTACACCG+AGG | 0.826194 | 4_3:+72064647 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAACAAAAGAGAAAAAT+TGG | + | chr4_3:72061690-72061709 | None:intergenic | 15.0% |
| !!! | ATTTTTATCAATTTGTTACT+AGG | - | chr4_3:72061773-72061792 | Msa0660940:CDS | 15.0% |
| !!! | TTTTTATCAATTTGTTACTA+GGG | - | chr4_3:72061774-72061793 | Msa0660940:CDS | 15.0% |
| !! | AAAATAACTAAGAAACATTA+TGG | + | chr4_3:72062577-72062596 | None:intergenic | 15.0% |
| !! | ACAGAATAATATATAACATT+TGG | + | chr4_3:72062649-72062668 | None:intergenic | 15.0% |
| !!! | TCAAATTTTAGAAAATGTAT+TGG | - | chr4_3:72062959-72062978 | Msa0660940:intron | 15.0% |
| !!! | CAAATTTTAGAAAATGTATT+GGG | - | chr4_3:72062960-72062979 | Msa0660940:intron | 15.0% |
| !!! | TATTGTATACTTTATTTTTG+TGG | - | chr4_3:72063200-72063219 | Msa0660940:intron | 15.0% |
| !!! | AAAATTGTAAGATTTTTCTA+AGG | - | chr4_3:72063276-72063295 | Msa0660940:intron | 15.0% |
| !!! | TTATTTTCTAAAACTGTTTT+TGG | - | chr4_3:72063622-72063641 | Msa0660940:intron | 15.0% |
| !!! | TATTTTCTAAAACTGTTTTT+GGG | - | chr4_3:72063623-72063642 | Msa0660940:intron | 15.0% |
| !!! | AGGACTATATTAATATTTTT+TGG | - | chr4_3:72064179-72064198 | Msa0660940:intron | 15.0% |
| !! | GACAAATATATTAATCTATT+GGG | + | chr4_3:72064475-72064494 | None:intergenic | 15.0% |
| !! | AGACAAATATATTAATCTAT+TGG | + | chr4_3:72064476-72064495 | None:intergenic | 15.0% |
| !! | TAGATTAATATATTTGTCTT+AGG | - | chr4_3:72064477-72064496 | Msa0660940:CDS | 15.0% |
| !! | TAAGAATAAAAAATAGAACA+AGG | + | chr4_3:72065183-72065202 | None:intergenic | 15.0% |
| !! | TGTATAATACTAAAATTTCT+TGG | - | chr4_3:72065257-72065276 | Msa0660940:five_prime_UTR | 15.0% |
| !! | TAATCTAGCATTCATAAATT+AGG | - | chr4_3:72062682-72062701 | Msa0660940:intron | 20.0% |
| !! | AAACATGTTTATAAGCTATA+TGG | + | chr4_3:72062911-72062930 | None:intergenic | 20.0% |
| !! | TTGTGTTTATTAATTTCAAC+AGG | + | chr4_3:72063099-72063118 | None:intergenic | 20.0% |
| !! | TGAAATTAATAAACACAACA+AGG | - | chr4_3:72063101-72063120 | Msa0660940:intron | 20.0% |
| !!! | ACAAAAATATAGTGTTATTG+TGG | + | chr4_3:72063143-72063162 | None:intergenic | 20.0% |
| !!! | ACAATAACACTATATTTTTG+TGG | - | chr4_3:72063142-72063161 | Msa0660940:intron | 20.0% |
| !!! | ATACAAAATATTGTAGGTTT+TGG | - | chr4_3:72063224-72063243 | Msa0660940:intron | 20.0% |
| !! | TTCCAAAAAATCTCATTATT+GGG | - | chr4_3:72063657-72063676 | Msa0660940:intron | 20.0% |
| !! | AGTATTTATTTAGTGCAATA+TGG | - | chr4_3:72064393-72064412 | Msa0660940:CDS | 20.0% |
| ! | GTTGAAAATTGAAATGATGA+AGG | + | chr4_3:72061630-72061649 | None:intergenic | 25.0% |
| !! | AATGAGCTAGTTTAAGAAAT+TGG | - | chr4_3:72061718-72061737 | Msa0660940:CDS | 25.0% |
| !! | ATGAGCTAGTTTAAGAAATT+GGG | - | chr4_3:72061719-72061738 | Msa0660940:CDS | 25.0% |
| ! | AATTGAACTTATCCATATCA+AGG | + | chr4_3:72062212-72062231 | None:intergenic | 25.0% |
| ! | TTTCTCTTTCACTATCATTT+CGG | - | chr4_3:72062856-72062875 | Msa0660940:intron | 25.0% |
| ! | ATGAGAAAAAATCTCAGAAA+TGG | - | chr4_3:72063025-72063044 | Msa0660940:intron | 25.0% |
| !! | GGTACTTTTGTATTATACAT+AGG | + | chr4_3:72063074-72063093 | None:intergenic | 25.0% |
| ! | GTTTATTAATTTCAACAGGA+AGG | + | chr4_3:72063095-72063114 | None:intergenic | 25.0% |
| ! | TTCAAATACTACCAAAACAA+TGG | + | chr4_3:72063596-72063615 | None:intergenic | 25.0% |
| ! | CTTCCAAAAAATCTCATTAT+TGG | - | chr4_3:72063656-72063675 | Msa0660940:intron | 25.0% |
| ! | TGCAATAGATAAAGCAAAAT+AGG | + | chr4_3:72063823-72063842 | None:intergenic | 25.0% |
| !! | TTTTCTTTCTATCTCTTTTG+TGG | - | chr4_3:72063879-72063898 | Msa0660940:intron | 25.0% |
| ! | AGGAAACATTTATAATGTTG+TGG | + | chr4_3:72064310-72064329 | None:intergenic | 25.0% |
| ! | TATCCTTGCAATTTACAATA+TGG | - | chr4_3:72064427-72064446 | Msa0660940:CDS | 25.0% |
| ! | ATACCATATTGTAAATTGCA+AGG | + | chr4_3:72064433-72064452 | None:intergenic | 25.0% |
| ! | AATATATTTGTCTTAGGTGA+AGG | - | chr4_3:72064483-72064502 | Msa0660940:CDS | 25.0% |
| ! | CCAAAAGAATTAAAGTTCAT+AGG | + | chr4_3:72064793-72064812 | None:intergenic | 25.0% |
| !! | CCTATGAACTTTAATTCTTT+TGG | - | chr4_3:72064790-72064809 | Msa0660940:CDS | 25.0% |
| !! | ATGAACTTTAATTCTTTTGG+AGG | - | chr4_3:72064793-72064812 | Msa0660940:CDS | 25.0% |
| !! | CTTTTTAGATTTCATTGTCT+TGG | - | chr4_3:72065133-72065152 | Msa0660940:intron | 25.0% |
| ! | GCTATGAATATATCAATGTA+GGG | - | chr4_3:72065295-72065314 | Msa0660940:five_prime_UTR | 25.0% |
| !! | GATTTTGTCAAATCTACAAT+AGG | - | chr4_3:72065320-72065339 | Msa0660940:five_prime_UTR | 25.0% |
| GAGAAAGGGAAAATGAATAT+CGG | + | chr4_3:72061530-72061549 | None:intergenic | 30.0% | |
| ! | CTTAGAGTTGTTTAGGATTA+AGG | - | chr4_3:72061834-72061853 | Msa0660940:CDS | 30.0% |
| TAGGATTAAGGAATCTTCAA+TGG | - | chr4_3:72061846-72061865 | Msa0660940:CDS | 30.0% | |
| TAAGGAATCTTCAATGGAAA+AGG | - | chr4_3:72061852-72061871 | Msa0660940:CDS | 30.0% | |
| AATGGAAAAGGACAAATCTT+TGG | - | chr4_3:72061864-72061883 | Msa0660940:CDS | 30.0% | |
| ATGGAAAAGGACAAATCTTT+GGG | - | chr4_3:72061865-72061884 | Msa0660940:CDS | 30.0% | |
| CTATCAAAGCTAATATCATC+CGG | + | chr4_3:72062114-72062133 | None:intergenic | 30.0% | |
| ! | AGCAACGTCTAATTTTCAAA+TGG | - | chr4_3:72062239-72062258 | Msa0660940:intron | 30.0% |
| ! | GCAACGTCTAATTTTCAAAT+GGG | - | chr4_3:72062240-72062259 | Msa0660940:intron | 30.0% |
| ! | TCTAATTTTCAAATGGGTGA+GGG | - | chr4_3:72062246-72062265 | Msa0660940:intron | 30.0% |
| !!! | TGACATTGCTTTTTTGGAAT+CGG | + | chr4_3:72062475-72062494 | None:intergenic | 30.0% |
| TTCTCTTTCACTATCATTTC+GGG | - | chr4_3:72062857-72062876 | Msa0660940:intron | 30.0% | |
| ! | TTCGGGATAATTTTATTCAC+TGG | - | chr4_3:72062874-72062893 | Msa0660940:intron | 30.0% |
| CATGTTTAGCAAAACTATTG+AGG | - | chr4_3:72062924-72062943 | Msa0660940:intron | 30.0% | |
| ! | TGTTATTGTGGTTCATGTTT+TGG | + | chr4_3:72063131-72063150 | None:intergenic | 30.0% |
| ! | GCAAAATATTGTAGGTTTTG+TGG | - | chr4_3:72063168-72063187 | Msa0660940:intron | 30.0% |
| TGTGGCATACAAAATATTGT+AGG | - | chr4_3:72063186-72063205 | Msa0660940:intron | 30.0% | |
| GGTATACTTTGCAATTGATA+AGG | - | chr4_3:72063245-72063264 | Msa0660940:intron | 30.0% | |
| ATACTTTGCAATTGATAAGG+AGG | - | chr4_3:72063248-72063267 | Msa0660940:intron | 30.0% | |
| ! | TAGTTGTTGTTGTTGTTCTA+AGG | - | chr4_3:72063311-72063330 | Msa0660940:intron | 30.0% |
| ACTGAAAGAAAATGTTGGAA+TGG | - | chr4_3:72063337-72063356 | Msa0660940:intron | 30.0% | |
| AGTTAATCTTACCTAGCATT+TGG | + | chr4_3:72063423-72063442 | None:intergenic | 30.0% | |
| TAACTACAATAGACCCATAA+TGG | - | chr4_3:72063438-72063457 | Msa0660940:intron | 30.0% | |
| AACTACAATAGACCCATAAT+GGG | - | chr4_3:72063439-72063458 | Msa0660940:intron | 30.0% | |
| TACTTCCATGATAACATCTA+GGG | + | chr4_3:72063475-72063494 | None:intergenic | 30.0% | |
| !!! | GTTGCGTTTTATTTACTTGA+AGG | - | chr4_3:72063510-72063529 | Msa0660940:intron | 30.0% |
| AATATATGGCATTATCTCCT+GGG | - | chr4_3:72063797-72063816 | Msa0660940:intron | 30.0% | |
| TTTGCTTTATCTATTGCACT+TGG | - | chr4_3:72063825-72063844 | Msa0660940:intron | 30.0% | |
| ! | TTTCTATCTCTTTTGTGGTT+TGG | - | chr4_3:72063884-72063903 | Msa0660940:intron | 30.0% |
| ! | TTCTATCTCTTTTGTGGTTT+GGG | - | chr4_3:72063885-72063904 | Msa0660940:intron | 30.0% |
| TGCTTATATTTGTGTGTAAC+AGG | - | chr4_3:72063937-72063956 | Msa0660940:intron | 30.0% | |
| TATTTGTGTGTAACAGGATA+TGG | - | chr4_3:72063943-72063962 | Msa0660940:intron | 30.0% | |
| ATTTGTGTGTAACAGGATAT+GGG | - | chr4_3:72063944-72063963 | Msa0660940:intron | 30.0% | |
| CTGGTTTAAAAGCTAATAGT+AGG | - | chr4_3:72064159-72064178 | Msa0660940:intron | 30.0% | |
| AATTGCAAGGATATTACACA+CGG | + | chr4_3:72064420-72064439 | None:intergenic | 30.0% | |
| TATAAGCTTGAGAATATCCA+AGG | - | chr4_3:72064619-72064638 | Msa0660940:CDS | 30.0% | |
| TTTAAATGACGCGTTAAAAG+AGG | - | chr4_3:72064714-72064733 | Msa0660940:CDS | 30.0% | |
| !! | AACTTTAATTCTTTTGGAGG+AGG | - | chr4_3:72064796-72064815 | Msa0660940:CDS | 30.0% |
| !! | ACTTTAATTCTTTTGGAGGA+GGG | - | chr4_3:72064797-72064816 | Msa0660940:CDS | 30.0% |
| TCTGATGAAGGATTATCTTT+GGG | + | chr4_3:72065060-72065079 | None:intergenic | 30.0% | |
| ATCTGATGAAGGATTATCTT+TGG | + | chr4_3:72065061-72065080 | None:intergenic | 30.0% | |
| TTCATCAGATGTAAATCCTT+CGG | - | chr4_3:72065071-72065090 | Msa0660940:intron | 30.0% | |
| TATTCATAGCCAATTAACTG+AGG | + | chr4_3:72065285-72065304 | None:intergenic | 30.0% | |
| GGCTATGAATATATCAATGT+AGG | - | chr4_3:72065294-72065313 | Msa0660940:five_prime_UTR | 30.0% | |
| ! | GTTTACTTTGTTGATTGAGA+TGG | - | chr4_3:72065346-72065365 | Msa0660940:five_prime_UTR | 30.0% |
| ! | TTTGTTGATTGAGATGGTAT+AGG | - | chr4_3:72065352-72065371 | Msa0660940:five_prime_UTR | 30.0% |
| ! | TTGTTGATTGAGATGGTATA+GGG | - | chr4_3:72065353-72065372 | Msa0660940:five_prime_UTR | 30.0% |
| ! | TTCCCTTTCTCTCTATTTCT+AGG | - | chr4_3:72061539-72061558 | Msa0660940:three_prime_UTR | 35.0% |
| !! | TCCCTTTCTCTCTATTTCTA+GGG | - | chr4_3:72061540-72061559 | Msa0660940:three_prime_UTR | 35.0% |
| ACCCTAGAAATAGAGAGAAA+GGG | + | chr4_3:72061544-72061563 | None:intergenic | 35.0% | |
| AACCCTAGAAATAGAGAGAA+AGG | + | chr4_3:72061545-72061564 | None:intergenic | 35.0% | |
| GTGATTGCTTAGAGTTGTTT+AGG | - | chr4_3:72061827-72061846 | Msa0660940:CDS | 35.0% | |
| !! | ATTAGCTTTGATAGTGACCT+CGG | - | chr4_3:72062120-72062139 | Msa0660940:intron | 35.0% |
| CTTATCCATATCAAGGTACA+TGG | + | chr4_3:72062205-72062224 | None:intergenic | 35.0% | |
| ! | GTCTAATTTTCAAATGGGTG+AGG | - | chr4_3:72062245-72062264 | Msa0660940:intron | 35.0% |
| ! | CTAATTTTCAAATGGGTGAG+GGG | - | chr4_3:72062247-72062266 | Msa0660940:intron | 35.0% |
| CAAACCTGAGATGTTAATCT+CGG | - | chr4_3:72062428-72062447 | Msa0660940:intron | 35.0% | |
| AAACCTGAGATGTTAATCTC+GGG | - | chr4_3:72062429-72062448 | Msa0660940:intron | 35.0% | |
| ! | TAATACCTTTTTGCACGCTT+GGG | + | chr4_3:72062531-72062550 | None:intergenic | 35.0% |
| ! | ATAATACCTTTTTGCACGCT+TGG | + | chr4_3:72062532-72062551 | None:intergenic | 35.0% |
| ! | CATGTTGGTGAAAAAAAAGG+TGG | + | chr4_3:72062798-72062817 | None:intergenic | 35.0% |
| AATGACAAAACAGAGCTTTG+AGG | + | chr4_3:72062830-72062849 | None:intergenic | 35.0% | |
| ! | TCAAAGCTCTGTTTTGTCAT+TGG | - | chr4_3:72062829-72062848 | Msa0660940:intron | 35.0% |
| TTTAGCAAAACTATTGAGGC+AGG | - | chr4_3:72062928-72062947 | Msa0660940:intron | 35.0% | |
| !! | TTTGAGACAGGATAGGATTT+TGG | - | chr4_3:72062985-72063004 | Msa0660940:intron | 35.0% |
| TGTGGCATGCAAAATATTGT+AGG | - | chr4_3:72063160-72063179 | Msa0660940:intron | 35.0% | |
| !!! | GATTTTTCTAAGGTCTACCA+AGG | - | chr4_3:72063286-72063305 | Msa0660940:intron | 35.0% |
| GGTCTACTGAAAGAAAATGT+TGG | - | chr4_3:72063332-72063351 | Msa0660940:intron | 35.0% | |
| ! | GCAAATGTTTTCCAAATGCT+AGG | - | chr4_3:72063409-72063428 | Msa0660940:intron | 35.0% |
| CTACTTCCATGATAACATCT+AGG | + | chr4_3:72063476-72063495 | None:intergenic | 35.0% | |
| CAAGTAAATAAAACGCAACC+TGG | + | chr4_3:72063509-72063528 | None:intergenic | 35.0% | |
| !!! | TCTAAAACTGTTTTTGGGTG+TGG | - | chr4_3:72063628-72063647 | Msa0660940:intron | 35.0% |
| !!! | GGCCCAATAATGAGATTTTT+TGG | + | chr4_3:72063662-72063681 | None:intergenic | 35.0% |
| !! | GGTATTGATGAAATACTGCT+CGG | - | chr4_3:72063708-72063727 | Msa0660940:intron | 35.0% |
| AGTTCCAGCTCATCAATATA+TGG | - | chr4_3:72063783-72063802 | Msa0660940:intron | 35.0% | |
| AATGCCATATATTGATGAGC+TGG | + | chr4_3:72063790-72063809 | None:intergenic | 35.0% | |
| CAATATATGGCATTATCTCC+TGG | - | chr4_3:72063796-72063815 | Msa0660940:intron | 35.0% | |
| TATGAACAGAGAGATACAAG+TGG | - | chr4_3:72064207-72064226 | Msa0660940:intron | 35.0% | |
| ATGAACAGAGAGATACAAGT+GGG | - | chr4_3:72064208-72064227 | Msa0660940:intron | 35.0% | |
| !! | TGGCTGCAAAATTTTGTTGT+TGG | - | chr4_3:72064525-72064544 | Msa0660940:CDS | 35.0% |
| !!! | GGCTGCAAAATTTTGTTGTT+GGG | - | chr4_3:72064526-72064545 | Msa0660940:CDS | 35.0% |
| !!! | GCAAAATTTTGTTGTTGGGT+TGG | - | chr4_3:72064530-72064549 | Msa0660940:CDS | 35.0% |
| TGCATGGCATGGTTATTATT+GGG | + | chr4_3:72064835-72064854 | None:intergenic | 35.0% | |
| TTTGTTGCTGCTGTATTTGT+TGG | + | chr4_3:72064948-72064967 | None:intergenic | 35.0% | |
| GAACAACAACAACAACAATC+AGG | - | chr4_3:72065000-72065019 | Msa0660940:intron | 35.0% | |
| CTGATGAAGGATTATCTTTG+GGG | + | chr4_3:72065059-72065078 | None:intergenic | 35.0% | |
| GAAGGATTTACATCTGATGA+AGG | + | chr4_3:72065072-72065091 | None:intergenic | 35.0% | |
| ! | GTTTGATTCGTTGACGAGAA+TGG | - | chr4_3:72061431-72061450 | Msa0660940:three_prime_UTR | 40.0% |
| !!! | GGGTTTTGAAGTGATTGAAC+TGG | - | chr4_3:72061794-72061813 | Msa0660940:CDS | 40.0% |
| AAGGACAAATCTTTGGGTCT+TGG | - | chr4_3:72061871-72061890 | Msa0660940:CDS | 40.0% | |
| ACATTGAAACCACTTCCAGT+TGG | + | chr4_3:72061940-72061959 | None:intergenic | 40.0% | |
| GATAATCCTCCGAGAAATAG+AGG | - | chr4_3:72062054-72062073 | Msa0660940:CDS | 40.0% | |
| ! | CGTCTATGACCTCTATTTCT+CGG | + | chr4_3:72062066-72062085 | None:intergenic | 40.0% |
| AAAGCTAATATCATCCGGCA+AGG | + | chr4_3:72062109-72062128 | None:intergenic | 40.0% | |
| CATGGACAACAAATCTTCCT+CGG | + | chr4_3:72062187-72062206 | None:intergenic | 40.0% | |
| GTTGTCCATGTACCTTGATA+TGG | - | chr4_3:72062197-72062216 | Msa0660940:intron | 40.0% | |
| ! | TACCTCTTCTGGGGAAAATA+TGG | - | chr4_3:72062332-72062351 | Msa0660940:intron | 40.0% |
| CAGTCGGTACTACAAATGAA+AGG | - | chr4_3:72062355-72062374 | Msa0660940:intron | 40.0% | |
| ! | AATACCTTTTTGCACGCTTG+GGG | + | chr4_3:72062530-72062549 | None:intergenic | 40.0% |
| AGTCAATAATACAGACCGAG+TGG | + | chr4_3:72062774-72062793 | None:intergenic | 40.0% | |
| ! | CGGCATGTTGGTGAAAAAAA+AGG | + | chr4_3:72062801-72062820 | None:intergenic | 40.0% |
| !! | ACAGAGCTTTGAGGAATTCA+CGG | + | chr4_3:72062821-72062840 | None:intergenic | 40.0% |
| CAAAACTATTGAGGCAGGAT+AGG | - | chr4_3:72062933-72062952 | Msa0660940:intron | 40.0% | |
| !! | ATGTATTGGGTCTTTGAGAC+AGG | - | chr4_3:72062973-72062992 | Msa0660940:intron | 40.0% |
| CAACAACAACAACTAAGCCT+TGG | + | chr4_3:72063306-72063325 | None:intergenic | 40.0% | |
| CCATGATAACATCTAGGGAA+GGG | + | chr4_3:72063470-72063489 | None:intergenic | 40.0% | |
| TCCATGATAACATCTAGGGA+AGG | + | chr4_3:72063471-72063490 | None:intergenic | 40.0% | |
| ! | ACACACTCACACCATTGTTT+TGG | - | chr4_3:72063582-72063601 | Msa0660940:intron | 40.0% |
| GAAATACTGCTCGGATAGAA+TGG | - | chr4_3:72063717-72063736 | Msa0660940:intron | 40.0% | |
| ATAGAATGGCCTTCCTTAGA+GGG | - | chr4_3:72063731-72063750 | Msa0660940:intron | 40.0% | |
| AGATAAAGCAAAATAGGCCC+AGG | + | chr4_3:72063817-72063836 | None:intergenic | 40.0% | |
| TAAGCAGTGTTTGTCGATGT+TGG | + | chr4_3:72063923-72063942 | None:intergenic | 40.0% | |
| GTAACAGGATATGGGCAAAT+AGG | - | chr4_3:72063952-72063971 | Msa0660940:intron | 40.0% | |
| GCTATATTGCTGAGCTTGAA+AGG | - | chr4_3:72064009-72064028 | Msa0660940:intron | 40.0% | |
| ! | GAAAGTGCAGACATTGCAAA+CGG | - | chr4_3:72064031-72064050 | Msa0660940:intron | 40.0% |
| TGCACAGTTAACTCTCTTAC+AGG | - | chr4_3:72064070-72064089 | Msa0660940:intron | 40.0% | |
| CCAGCAAGCGAAATAGTAAT+TGG | + | chr4_3:72064143-72064162 | None:intergenic | 40.0% | |
| CCAATTACTATTTCGCTTGC+TGG | - | chr4_3:72064140-72064159 | Msa0660940:intron | 40.0% | |
| AAGCTTGAGAATATCCAAGG+TGG | - | chr4_3:72064622-72064641 | Msa0660940:CDS | 40.0% | |
| TCAAGATAAACTGTCCACCT+TGG | + | chr4_3:72064639-72064658 | None:intergenic | 40.0% | |
| ! | ACGCGTCATTTAAAGCTACA+AGG | + | chr4_3:72064708-72064727 | None:intergenic | 40.0% |
| !! | ACGCATTTGAAAGTACTGAC+TGG | - | chr4_3:72064742-72064761 | Msa0660940:CDS | 40.0% |
| !! | CGCATTTGAAAGTACTGACT+GGG | - | chr4_3:72064743-72064762 | Msa0660940:CDS | 40.0% |
| AAGTTCATAGGTCCTCCATT+TGG | + | chr4_3:72064781-72064800 | None:intergenic | 40.0% | |
| GTGCATGGCATGGTTATTAT+TGG | + | chr4_3:72064836-72064855 | None:intergenic | 40.0% | |
| !! | GCTGTTTCTGAGGATGAATT+TGG | + | chr4_3:72064891-72064910 | None:intergenic | 40.0% |
| TTCTTGGCACCTCAGTTAAT+TGG | - | chr4_3:72065273-72065292 | Msa0660940:five_prime_UTR | 40.0% | |
| CGGAATGAAGAGAGAGAAAG+TGG | + | chr4_3:72061510-72061529 | None:intergenic | 45.0% | |
| GTAGATCAGGGGAGATAGAT+TGG | + | chr4_3:72061581-72061600 | None:intergenic | 45.0% | |
| GACAAATCTTTGGGTCTTGG+CGG | - | chr4_3:72061874-72061893 | Msa0660940:CDS | 45.0% | |
| TATCCGGGTTATTCACCAAC+TGG | - | chr4_3:72061922-72061941 | Msa0660940:CDS | 45.0% | |
| !! | CTTCCAGTTGGTGAATAACC+CGG | + | chr4_3:72061928-72061947 | None:intergenic | 45.0% |
| GGTTATTCACCAACTGGAAG+TGG | - | chr4_3:72061928-72061947 | Msa0660940:CDS | 45.0% | |
| AAAGCCACTAGAATCTGAGC+TGG | + | chr4_3:72062010-72062029 | None:intergenic | 45.0% | |
| ! | CTATGACCTCTATTTCTCGG+AGG | + | chr4_3:72062063-72062082 | None:intergenic | 45.0% |
| TTCCGAGATTCTTACCTTGC+CGG | - | chr4_3:72062092-72062111 | Msa0660940:intron | 45.0% | |
| ATCCGGCAAGGTAAGAATCT+CGG | + | chr4_3:72062097-72062116 | None:intergenic | 45.0% | |
| TCGGTATCATCAGAGAACGA+CGG | + | chr4_3:72062168-72062187 | None:intergenic | 45.0% | |
| ! | TGCCATATTTTCCCCAGAAG+AGG | + | chr4_3:72062337-72062356 | None:intergenic | 45.0% |
| TCTGGGGAAAATATGGCAGT+CGG | - | chr4_3:72062339-72062358 | Msa0660940:intron | 45.0% | |
| ! | GATTGTTGTTGACCCATCCA+TGG | + | chr4_3:72062409-72062428 | None:intergenic | 45.0% |
| GAACCCGAGATTAACATCTC+AGG | + | chr4_3:72062435-72062454 | None:intergenic | 45.0% | |
| !!! | GGCTGCTGACATTGCTTTTT+TGG | + | chr4_3:72062481-72062500 | None:intergenic | 45.0% |
| ATCCTGACGTGTATTCCACT+CGG | - | chr4_3:72062756-72062775 | Msa0660940:CDS | 45.0% | |
| TTGAGGAATTCACGGCATGT+TGG | + | chr4_3:72062813-72062832 | None:intergenic | 45.0% | |
| !! | TTGGGTCTTTGAGACAGGAT+AGG | - | chr4_3:72062978-72062997 | Msa0660940:intron | 45.0% |
| GATAACATCTAGGGAAGGGT+TGG | + | chr4_3:72063466-72063485 | None:intergenic | 45.0% | |
| CCCTTCCCTAGATGTTATCA+TGG | - | chr4_3:72063467-72063486 | Msa0660940:intron | 45.0% | |
| ATCAATACCTGCTGCAGTGT+GGG | + | chr4_3:72063697-72063716 | None:intergenic | 45.0% | |
| GATAGAATGGCCTTCCTTAG+AGG | - | chr4_3:72063730-72063749 | Msa0660940:intron | 45.0% | |
| TGTATAGACTGTGCCCTCTA+AGG | + | chr4_3:72063747-72063766 | None:intergenic | 45.0% | |
| !! | CAAGTGAACTTGTTGCTCCA+TGG | + | chr4_3:72064274-72064293 | None:intergenic | 45.0% |
| CAACAAGTTCACTTGCAGGA+TGG | - | chr4_3:72064279-72064298 | Msa0660940:CDS | 45.0% | |
| GTGCATGTTTAGTGTGAAGC+TGG | - | chr4_3:72064505-72064524 | Msa0660940:CDS | 45.0% | |
| TTCATAGGTCCTCCATTTGG+CGG | + | chr4_3:72064778-72064797 | None:intergenic | 45.0% | |
| !! | TGATGTTGCTGCTGTTTCTG+AGG | + | chr4_3:72064901-72064920 | None:intergenic | 45.0% |
| !! | GAAGGATTATCTTTGGGGCA+TGG | + | chr4_3:72065054-72065073 | None:intergenic | 45.0% |
| CGCAGTTTCTCAACAATCCT+TGG | + | chr4_3:72065100-72065119 | None:intergenic | 45.0% | |
| !! | TTGTCTTGGTGTCCTAGTGT+TGG | - | chr4_3:72065147-72065166 | Msa0660940:intron | 45.0% |
| TCTATCTCCCCTGATCTACG+CGG | - | chr4_3:72061582-72061601 | Msa0660940:three_prime_UTR | 50.0% | |
| AAATCTTTGGGTCTTGGCGG+TGG | - | chr4_3:72061877-72061896 | Msa0660940:CDS | 50.0% | |
| ACCTCCATCAGGACGTTATC+CGG | - | chr4_3:72061906-72061925 | Msa0660940:CDS | 50.0% | |
| TAACCCGGATAACGTCCTGA+TGG | + | chr4_3:72061913-72061932 | None:intergenic | 50.0% | |
| ! | CTAGAATCTGAGCTGGTTCC+AGG | + | chr4_3:72062003-72062022 | None:intergenic | 50.0% |
| GGAACCAGCTCAGATTCTAG+TGG | - | chr4_3:72062003-72062022 | Msa0660940:CDS | 50.0% | |
| ! | GATAGTGACCTCGGTGTAGT+TGG | - | chr4_3:72062129-72062148 | Msa0660940:intron | 50.0% |
| GTCGTTCTCTGATGATACCG+AGG | - | chr4_3:72062167-72062186 | Msa0660940:intron | 50.0% | |
| ! | CTGTGCTGGTGTCTGATTCT+GGG | + | chr4_3:72062381-72062400 | None:intergenic | 50.0% |
| TTGTTGACCCATCCATGGAC+TGG | + | chr4_3:72062404-72062423 | None:intergenic | 50.0% | |
| CAAGGCAAGTTCTGCAAGCT+TGG | + | chr4_3:72062502-72062521 | None:intergenic | 50.0% | |
| TTGACCCCAAGCGTGCAAAA+AGG | - | chr4_3:72062523-72062542 | Msa0660940:CDS | 50.0% | |
| GGAAGGGTTGGACCCATTAT+GGG | + | chr4_3:72063454-72063473 | None:intergenic | 50.0% | |
| ! | GGAAGTAGCTCTATAGCACC+AGG | - | chr4_3:72063488-72063507 | Msa0660940:intron | 50.0% |
| CAGTGTGGGAAGGGATCAAA+AGG | + | chr4_3:72063683-72063702 | None:intergenic | 50.0% | |
| CATCAATACCTGCTGCAGTG+TGG | + | chr4_3:72063698-72063717 | None:intergenic | 50.0% | |
| ! | TAGACTGTGCCCTCTAAGGA+AGG | + | chr4_3:72063743-72063762 | None:intergenic | 50.0% |
| ATGGGCAAATAGGCAGTCTG+CGG | - | chr4_3:72063962-72063981 | Msa0660940:intron | 50.0% | |
| CTGCGGCAAGGTCAAAAGAA+AGG | - | chr4_3:72063979-72063998 | Msa0660940:intron | 50.0% | |
| AGAACAGTGAGCTGAAGCTG+CGG | - | chr4_3:72064241-72064260 | Msa0660940:intron | 50.0% | |
| GGAGCAACAAGTTCACTTGC+AGG | - | chr4_3:72064275-72064294 | Msa0660940:CDS | 50.0% | |
| ! | CCAAAAGAGTGTGCATGGCA+TGG | + | chr4_3:72064846-72064865 | None:intergenic | 50.0% |
| ! | CCATGCCATGCACACTCTTT+TGG | - | chr4_3:72064843-72064862 | Msa0660940:CDS | 50.0% |
| ! | TGCAGCCAAAAGAGTGTGCA+TGG | + | chr4_3:72064851-72064870 | None:intergenic | 50.0% |
| !! | GGATTATCTTTGGGGCATGG+AGG | + | chr4_3:72065051-72065070 | None:intergenic | 50.0% |
| TGTAAATCCTTCGGCAGCCA+AGG | - | chr4_3:72065080-72065099 | Msa0660940:intron | 50.0% | |
| !! | CTTGGTGTCCTAGTGTTGGT+AGG | - | chr4_3:72065151-72065170 | Msa0660940:intron | 50.0% |
| ! | GGTGGTTTTCCACCTCCATC+AGG | - | chr4_3:72061895-72061914 | Msa0660940:CDS | 55.0% |
| GGATAACGTCCTGATGGAGG+TGG | + | chr4_3:72061907-72061926 | None:intergenic | 55.0% | |
| CCTCCATCAGGACGTTATCC+GGG | - | chr4_3:72061907-72061926 | Msa0660940:CDS | 55.0% | |
| ! | AGTGACCTCGGTGTAGTTGG+TGG | - | chr4_3:72062132-72062151 | Msa0660940:intron | 55.0% |
| !! | GGTGTAGTTGGTGGTGCTGA+TGG | - | chr4_3:72062141-72062160 | Msa0660940:intron | 55.0% |
| GTCTAATGCTGCCGGAGCAT+CGG | - | chr4_3:72062269-72062288 | Msa0660940:intron | 55.0% | |
| ! | TCTAATGCTGCCGGAGCATC+GGG | - | chr4_3:72062270-72062289 | Msa0660940:intron | 55.0% |
| ATCGGGTTTGGCGCCAATGT+CGG | - | chr4_3:72062287-72062306 | Msa0660940:intron | 55.0% | |
| GTTTGGCGCCAATGTCGGTA+GGG | - | chr4_3:72062292-72062311 | Msa0660940:intron | 55.0% | |
| GATGTCTGCCCTACCGACAT+TGG | + | chr4_3:72062303-72062322 | None:intergenic | 55.0% | |
| ATGTCGGTAGGGCAGACATC+AGG | - | chr4_3:72062303-72062322 | Msa0660940:intron | 55.0% | |
| !! | TCAGGAGGAGGTACCTCTTC+TGG | - | chr4_3:72062321-72062340 | Msa0660940:intron | 55.0% |
| !! | CAGGAGGAGGTACCTCTTCT+GGG | - | chr4_3:72062322-72062341 | Msa0660940:intron | 55.0% |
| !! | AGGAGGAGGTACCTCTTCTG+GGG | - | chr4_3:72062323-72062342 | Msa0660940:intron | 55.0% |
| ! | GCTGTGCTGGTGTCTGATTC+TGG | + | chr4_3:72062382-72062401 | None:intergenic | 55.0% |
| AGCACAGCCAGTCCATGGAT+GGG | - | chr4_3:72062394-72062413 | Msa0660940:intron | 55.0% | |
| TGCACGCTTGGGGTCAATCA+AGG | + | chr4_3:72062520-72062539 | None:intergenic | 55.0% | |
| GACCGAGTGGAATACACGTC+AGG | + | chr4_3:72062761-72062780 | None:intergenic | 55.0% | |
| GGGAAGGGTTGGACCCATTA+TGG | + | chr4_3:72063455-72063474 | None:intergenic | 55.0% | |
| TACCTGCTGCAGTGTGGGAA+GGG | + | chr4_3:72063692-72063711 | None:intergenic | 55.0% | |
| ATACCTGCTGCAGTGTGGGA+AGG | + | chr4_3:72063693-72063712 | None:intergenic | 55.0% | |
| CAAATAGGCAGTCTGCGGCA+AGG | - | chr4_3:72063967-72063986 | Msa0660940:intron | 55.0% | |
| GAAGCTGCGGTTGCAAACCA+TGG | - | chr4_3:72064254-72064273 | Msa0660940:intron | 55.0% | |
| AGCAGCAGAGTAGCAGCTTC+AGG | + | chr4_3:72064330-72064349 | None:intergenic | 55.0% | |
| CAAGCTATGCCGCCAAATGG+AGG | - | chr4_3:72064766-72064785 | Msa0660940:CDS | 55.0% | |
| ACAAATGCAGCAGCAGCAGC+AGG | - | chr4_3:72064978-72064997 | Msa0660940:five_prime_UTR | 55.0% | |
| CAACAATCCTTGGCTGCCGA+AGG | + | chr4_3:72065090-72065109 | None:intergenic | 55.0% | |
| GGCTGCAACCTACCAACACT+AGG | + | chr4_3:72065162-72065181 | None:intergenic | 55.0% | |
| CTTTGCGCCGCGTAGATCAG+GGG | + | chr4_3:72061592-72061611 | None:intergenic | 60.0% | |
| CCTTTGCGCCGCGTAGATCA+GGG | + | chr4_3:72061593-72061612 | None:intergenic | 60.0% | |
| ACCTTTGCGCCGCGTAGATC+AGG | + | chr4_3:72061594-72061613 | None:intergenic | 60.0% | |
| CCCGGATAACGTCCTGATGG+AGG | + | chr4_3:72061910-72061929 | None:intergenic | 60.0% | |
| ! | GGCGGATACGACGATGATGG+GGG | + | chr4_3:72061973-72061992 | None:intergenic | 60.0% |
| CGGCGGATACGACGATGATG+GGG | + | chr4_3:72061974-72061993 | None:intergenic | 60.0% | |
| GCGGCGGATACGACGATGAT+GGG | + | chr4_3:72061975-72061994 | None:intergenic | 60.0% | |
| AGCGGCGGATACGACGATGA+TGG | + | chr4_3:72061976-72061995 | None:intergenic | 60.0% | |
| ! | GAGCTGGTTCCAGGAGCAAG+CGG | + | chr4_3:72061994-72062013 | None:intergenic | 60.0% |
| CAGCACCACCAACTACACCG+AGG | + | chr4_3:72062140-72062159 | None:intergenic | 60.0% | |
| GGTGAGGGGTCTAATGCTGC+CGG | - | chr4_3:72062261-72062280 | Msa0660940:intron | 60.0% | |
| GGTTTGGCGCCAATGTCGGT+AGG | - | chr4_3:72062291-72062310 | Msa0660940:intron | 60.0% | |
| TCGGTAGGGCAGACATCAGG+AGG | - | chr4_3:72062306-72062325 | Msa0660940:intron | 60.0% | |
| GTAGGGCAGACATCAGGAGG+AGG | - | chr4_3:72062309-72062328 | Msa0660940:intron | 60.0% | |
| ACACCAGCACAGCCAGTCCA+TGG | - | chr4_3:72062389-72062408 | Msa0660940:intron | 60.0% | |
| !! | CATCCATGGACTGGCTGTGC+TGG | + | chr4_3:72062395-72062414 | None:intergenic | 60.0% |
| CAGCACAGCCAGTCCATGGA+TGG | - | chr4_3:72062393-72062412 | Msa0660940:intron | 60.0% | |
| ATCCCTTCCCACACTGCAGC+AGG | - | chr4_3:72063687-72063706 | Msa0660940:intron | 60.0% | |
| GGGCAAGCTATGCCGCCAAA+TGG | - | chr4_3:72064763-72064782 | Msa0660940:CDS | 60.0% | |
| CCCTGATCTACGCGGCGCAA+AGG | - | chr4_3:72061590-72061609 | Msa0660940:three_prime_UTR | 65.0% | |
| TCGTATCCGCCGCTTGCTCC+TGG | - | chr4_3:72061982-72062001 | Msa0660940:CDS | 65.0% | |
| CTGGTTCCAGGAGCAAGCGG+CGG | + | chr4_3:72061991-72062010 | None:intergenic | 65.0% | |
| !! | TGCTGCCGGAGCATCGGGTT+TGG | - | chr4_3:72062275-72062294 | Msa0660940:intron | 65.0% |
| TGGCGCCAAACCCGATGCTC+CGG | + | chr4_3:72062283-72062302 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 72061420 | 72065386 | 72061420 | ID=Msa0660940;Name=Msa0660940 |
| chr4_3 | mRNA | 72061420 | 72065386 | 72061420 | ID=Msa0660940-mRNA-1;Parent=Msa0660940;Name=Msa0660940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=262|1|1|1|0.75|0.6|5|276|431 |
| chr4_3 | exon | 72061420 | 72062093 | 72061420 | ID=Msa0660940-mRNA-1:exon:21601;Parent=Msa0660940-mRNA-1 |
| chr4_3 | exon | 72062506 | 72062590 | 72062506 | ID=Msa0660940-mRNA-1:exon:21600;Parent=Msa0660940-mRNA-1 |
| chr4_3 | exon | 72062715 | 72062847 | 72062715 | ID=Msa0660940-mRNA-1:exon:21599;Parent=Msa0660940-mRNA-1 |
| chr4_3 | exon | 72064262 | 72065011 | 72064262 | ID=Msa0660940-mRNA-1:exon:21598;Parent=Msa0660940-mRNA-1 |
| chr4_3 | exon | 72065195 | 72065386 | 72065195 | ID=Msa0660940-mRNA-1:exon:21597;Parent=Msa0660940-mRNA-1 |
| chr4_3 | five_prime_UTR | 72065195 | 72065386 | 72065195 | ID=Msa0660940-mRNA-1:five_prime_utr;Parent=Msa0660940-mRNA-1 |
| chr4_3 | five_prime_UTR | 72064942 | 72065011 | 72064942 | ID=Msa0660940-mRNA-1:five_prime_utr;Parent=Msa0660940-mRNA-1 |
| chr4_3 | CDS | 72064262 | 72064941 | 72064262 | ID=Msa0660940-mRNA-1:cds;Parent=Msa0660940-mRNA-1 |
| chr4_3 | CDS | 72062715 | 72062847 | 72062715 | ID=Msa0660940-mRNA-1:cds;Parent=Msa0660940-mRNA-1 |
| chr4_3 | CDS | 72062506 | 72062590 | 72062506 | ID=Msa0660940-mRNA-1:cds;Parent=Msa0660940-mRNA-1 |
| chr4_3 | CDS | 72061696 | 72062093 | 72061696 | ID=Msa0660940-mRNA-1:cds;Parent=Msa0660940-mRNA-1 |
| chr4_3 | three_prime_UTR | 72061420 | 72061695 | 72061420 | ID=Msa0660940-mRNA-1:three_prime_utr;Parent=Msa0660940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
