Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661820 | XP_039685680.1 | 84.981 | 799 | 100 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661820 | sp|Q9SZL8|FRS5_ARATH | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.32e-69 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661820 | D3YBB9 | 76.456 | 807 | 173 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1285 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0661820 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661820 | MtrunA17_Chr3g0088371 | 83.696 | 184 | 27 | 1 | 618 | 798 | 1 | 184 | 1.95e-103 | 316 |
| Msa0661820 | MtrunA17_Chr3g0082121 | 31.693 | 691 | 384 | 17 | 41 | 727 | 49 | 655 | 8.85e-101 | 327 |
| Msa0661820 | MtrunA17_Chr2g0324011 | 30.709 | 635 | 364 | 13 | 36 | 665 | 8 | 571 | 1.40e-100 | 323 |
| Msa0661820 | MtrunA17_Chr1g0202341 | 29.606 | 635 | 366 | 17 | 34 | 662 | 50 | 609 | 2.20e-79 | 269 |
| Msa0661820 | MtrunA17_Chr8g0363841 | 28.776 | 629 | 375 | 13 | 40 | 665 | 22 | 580 | 5.96e-75 | 257 |
| Msa0661820 | MtrunA17_Chr1g0203721 | 26.026 | 780 | 452 | 20 | 1 | 739 | 16 | 711 | 7.33e-73 | 255 |
| Msa0661820 | MtrunA17_Chr5g0448761 | 25.318 | 707 | 449 | 14 | 31 | 728 | 56 | 692 | 1.42e-69 | 244 |
| Msa0661820 | MtrunA17_Chr2g0296781 | 27.688 | 679 | 405 | 20 | 39 | 708 | 1 | 602 | 3.75e-69 | 242 |
| Msa0661820 | MtrunA17_Chr6g0458391 | 26.984 | 630 | 357 | 15 | 41 | 662 | 231 | 765 | 3.59e-65 | 232 |
| Msa0661820 | MtrunA17_Chr6g0477261 | 29.032 | 527 | 316 | 14 | 180 | 699 | 7 | 482 | 6.45e-64 | 226 |
| Msa0661820 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 131 | 448 | 1 | 307 | 5.66e-63 | 214 |
| Msa0661820 | MtrunA17_Chr5g0441581 | 24.835 | 757 | 461 | 21 | 32 | 773 | 26 | 689 | 4.54e-60 | 216 |
| Msa0661820 | MtrunA17_Chr2g0287651 | 25.437 | 629 | 389 | 13 | 39 | 662 | 79 | 632 | 3.04e-58 | 214 |
| Msa0661820 | MtrunA17_Chr1g0207551 | 24.964 | 697 | 429 | 17 | 31 | 718 | 30 | 641 | 2.24e-55 | 204 |
| Msa0661820 | MtrunA17_Chr5g0440451 | 24.234 | 718 | 417 | 18 | 34 | 721 | 42 | 662 | 6.43e-55 | 204 |
| Msa0661820 | MtrunA17_Chr2g0329031 | 25.469 | 640 | 389 | 16 | 23 | 658 | 2 | 557 | 6.17e-54 | 199 |
| Msa0661820 | MtrunA17_Chr1g0196541 | 25.199 | 627 | 395 | 16 | 39 | 662 | 1 | 556 | 9.19e-54 | 199 |
| Msa0661820 | MtrunA17_Chr1g0172971 | 81.197 | 117 | 21 | 1 | 1 | 116 | 1 | 117 | 1.51e-53 | 194 |
| Msa0661820 | MtrunA17_Chr7g0258861 | 35.621 | 306 | 173 | 6 | 36 | 336 | 8 | 294 | 3.88e-53 | 187 |
| Msa0661820 | MtrunA17_Chr3g0118611 | 27.634 | 503 | 304 | 10 | 221 | 719 | 111 | 557 | 1.44e-52 | 196 |
| Msa0661820 | MtrunA17_Chr1g0198761 | 26.840 | 652 | 381 | 19 | 26 | 660 | 38 | 610 | 3.50e-52 | 194 |
| Msa0661820 | MtrunA17_Chr3g0080351 | 24.414 | 725 | 444 | 17 | 34 | 752 | 75 | 701 | 2.76e-49 | 187 |
| Msa0661820 | MtrunA17_Chr2g0287061 | 23.916 | 669 | 378 | 19 | 41 | 694 | 189 | 741 | 3.32e-47 | 180 |
| Msa0661820 | MtrunA17_Chr2g0290391 | 25.857 | 642 | 373 | 19 | 38 | 660 | 54 | 611 | 9.35e-47 | 177 |
| Msa0661820 | MtrunA17_Chr1g0203051 | 22.373 | 590 | 389 | 8 | 50 | 637 | 94 | 616 | 1.47e-46 | 176 |
| Msa0661820 | MtrunA17_Chr2g0276841 | 26.101 | 636 | 374 | 21 | 49 | 670 | 84 | 637 | 7.42e-45 | 172 |
| Msa0661820 | MtrunA17_Chr5g0448511 | 25.664 | 452 | 282 | 10 | 216 | 665 | 1 | 400 | 4.04e-44 | 167 |
| Msa0661820 | MtrunA17_Chr2g0291591 | 25.651 | 499 | 315 | 13 | 16 | 499 | 44 | 501 | 1.13e-41 | 160 |
| Msa0661820 | MtrunA17_Chr2g0291581 | 24.083 | 627 | 395 | 14 | 38 | 662 | 74 | 621 | 1.24e-41 | 162 |
| Msa0661820 | MtrunA17_Chr5g0431001 | 27.716 | 451 | 281 | 12 | 40 | 473 | 66 | 488 | 2.16e-41 | 159 |
| Msa0661820 | MtrunA17_Chr6g0475591 | 90.411 | 73 | 7 | 0 | 188 | 260 | 1 | 73 | 5.27e-40 | 141 |
| Msa0661820 | MtrunA17_Chr2g0294841 | 26.640 | 503 | 316 | 15 | 3 | 482 | 7 | 479 | 1.72e-35 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0661820 | AT4G38180.1 | 27.925 | 641 | 382 | 14 | 32 | 665 | 70 | 637 | 1.34e-70 | 248 |
| Msa0661820 | AT4G15090.1 | 24.827 | 721 | 448 | 16 | 50 | 753 | 66 | 709 | 3.45e-60 | 219 |
| Msa0661820 | AT4G15090.5 | 24.827 | 721 | 448 | 16 | 50 | 753 | 66 | 709 | 3.45e-60 | 219 |
| Msa0661820 | AT4G15090.3 | 24.827 | 721 | 448 | 16 | 50 | 753 | 66 | 709 | 3.45e-60 | 219 |
| Msa0661820 | AT4G15090.2 | 24.827 | 721 | 448 | 16 | 50 | 753 | 66 | 709 | 3.45e-60 | 219 |
| Msa0661820 | AT4G15090.4 | 24.827 | 721 | 448 | 16 | 50 | 753 | 66 | 709 | 3.45e-60 | 219 |
| Msa0661820 | AT2G27110.2 | 26.466 | 597 | 365 | 15 | 127 | 719 | 108 | 634 | 4.65e-54 | 201 |
| Msa0661820 | AT2G27110.1 | 26.466 | 597 | 365 | 15 | 127 | 719 | 108 | 634 | 4.65e-54 | 201 |
| Msa0661820 | AT2G27110.3 | 26.937 | 542 | 325 | 13 | 180 | 719 | 17 | 489 | 3.02e-53 | 197 |
| Msa0661820 | AT3G06250.2 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 2.96e-51 | 192 |
| Msa0661820 | AT3G06250.1 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 2.96e-51 | 192 |
| Msa0661820 | AT3G06250.3 | 25.118 | 633 | 351 | 16 | 34 | 661 | 189 | 703 | 2.96e-51 | 192 |
| Msa0661820 | AT1G76320.3 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 1.29e-50 | 189 |
| Msa0661820 | AT1G76320.2 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 6.14e-50 | 188 |
| Msa0661820 | AT1G76320.1 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 7.09e-50 | 188 |
| Msa0661820 | AT1G76320.4 | 24.815 | 677 | 413 | 19 | 50 | 720 | 12 | 598 | 7.09e-50 | 188 |
| Msa0661820 | AT3G22170.2 | 23.290 | 687 | 419 | 17 | 34 | 708 | 69 | 659 | 8.16e-49 | 186 |
| Msa0661820 | AT3G22170.1 | 23.290 | 687 | 419 | 17 | 34 | 708 | 69 | 659 | 8.16e-49 | 186 |
| Msa0661820 | AT5G18960.2 | 24.575 | 647 | 360 | 18 | 24 | 661 | 200 | 727 | 2.80e-45 | 175 |
| Msa0661820 | AT5G18960.1 | 24.575 | 647 | 360 | 18 | 24 | 661 | 200 | 727 | 2.80e-45 | 175 |
| Msa0661820 | AT4G38170.1 | 25.290 | 431 | 264 | 11 | 235 | 662 | 24 | 399 | 5.03e-44 | 167 |
| Msa0661820 | AT1G10240.2 | 24.880 | 623 | 376 | 19 | 49 | 659 | 62 | 604 | 5.31e-42 | 164 |
| Msa0661820 | AT1G10240.1 | 24.880 | 623 | 376 | 19 | 49 | 659 | 62 | 604 | 5.31e-42 | 164 |
| Msa0661820 | AT5G28530.1 | 24.100 | 639 | 388 | 17 | 40 | 660 | 60 | 619 | 2.68e-41 | 162 |
| Msa0661820 | AT2G32250.5 | 24.295 | 745 | 427 | 22 | 4 | 743 | 10 | 622 | 1.30e-40 | 160 |
| Msa0661820 | AT5G28530.3 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 1.34e-40 | 159 |
| Msa0661820 | AT5G28530.2 | 23.944 | 639 | 385 | 18 | 40 | 660 | 60 | 615 | 1.34e-40 | 159 |
| Msa0661820 | AT2G32250.2 | 24.295 | 745 | 427 | 22 | 4 | 743 | 10 | 622 | 2.19e-40 | 160 |
| Msa0661820 | AT2G32250.4 | 24.295 | 745 | 427 | 22 | 4 | 743 | 10 | 622 | 2.19e-40 | 160 |
| Msa0661820 | AT2G32250.6 | 24.295 | 745 | 427 | 22 | 4 | 743 | 10 | 622 | 3.20e-40 | 159 |
| Msa0661820 | AT2G32250.1 | 24.295 | 745 | 427 | 22 | 4 | 743 | 10 | 622 | 3.20e-40 | 159 |
| Msa0661820 | AT2G32250.3 | 24.295 | 745 | 427 | 22 | 4 | 743 | 10 | 622 | 3.20e-40 | 159 |
| Msa0661820 | AT2G32250.7 | 24.320 | 699 | 395 | 20 | 50 | 743 | 12 | 581 | 1.67e-39 | 157 |
| Msa0661820 | AT2G32250.8 | 24.320 | 699 | 395 | 20 | 50 | 743 | 12 | 581 | 1.71e-39 | 157 |
| Msa0661820 | AT1G80010.1 | 24.043 | 653 | 373 | 23 | 41 | 662 | 101 | 661 | 2.57e-37 | 150 |
| Msa0661820 | AT1G52520.1 | 22.311 | 623 | 408 | 15 | 41 | 662 | 91 | 638 | 1.44e-33 | 138 |
| Msa0661820 | AT4G19990.1 | 28.731 | 268 | 184 | 4 | 219 | 483 | 106 | 369 | 1.62e-27 | 119 |
| Msa0661820 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 1.27e-12 | 72.0 |
| Msa0661820 | AT4G19990.7 | 28.731 | 268 | 184 | 4 | 219 | 483 | 177 | 440 | 1.72e-27 | 119 |
| Msa0661820 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 1.49e-12 | 72.0 |
| Msa0661820 | AT4G19990.5 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 1.87e-27 | 119 |
| Msa0661820 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.45e-12 | 72.0 |
| Msa0661820 | AT4G19990.3 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.05e-27 | 119 |
| Msa0661820 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.46e-12 | 72.0 |
| Msa0661820 | AT4G19990.4 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.05e-27 | 119 |
| Msa0661820 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.46e-12 | 72.0 |
| Msa0661820 | AT4G19990.6 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.27e-27 | 119 |
| Msa0661820 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.39e-12 | 72.0 |
| Msa0661820 | AT4G19990.2 | 28.731 | 268 | 184 | 4 | 219 | 483 | 163 | 426 | 2.27e-27 | 119 |
| Msa0661820 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 1.39e-12 | 72.0 |
| Msa0661820 | AT5G28530.4 | 21.781 | 629 | 352 | 20 | 40 | 660 | 60 | 556 | 2.04e-22 | 103 |
| Msa0661820 | AT5G28530.5 | 21.622 | 629 | 349 | 21 | 40 | 660 | 60 | 552 | 9.24e-22 | 100 |
Find 123 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 4_3:-73389639 | Msa0661820:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 4_3:-73389948 | Msa0661820:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 4_3:+73388813 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 4_3:-73389681 | Msa0661820:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 4_3:-73390732 | Msa0661820:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 4_3:-73390229 | Msa0661820:intron |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 4_3:-73390196 | Msa0661820:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 4_3:+73390102 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 4_3:+73388819 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 4_3:-73389907 | Msa0661820:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 4_3:-73388967 | Msa0661820:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 4_3:+73390682 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 4_3:-73388570 | Msa0661820:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 4_3:+73388751 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 4_3:-73389384 | Msa0661820:CDS |
| ACTAGCCTGGTCTGTGTATA+TGG | 0.360230 | 4_3:+73390084 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 4_3:-73389807 | Msa0661820:CDS |
| AATTCTTGATTGTTATGTAT+TGG | 0.372244 | 4_3:-73388589 | Msa0661820:three_prime_UTR |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 4_3:-73388975 | Msa0661820:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 4_3:-73390675 | Msa0661820:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 4_3:-73390683 | Msa0661820:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 4_3:-73391595 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 4_3:-73389808 | Msa0661820:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 4_3:+73389091 | None:intergenic |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 4_3:+73391212 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 4_3:-73388827 | Msa0661820:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 4_3:+73388837 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 4_3:-73389507 | Msa0661820:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 4_3:-73388942 | Msa0661820:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 4_3:-73391441 | Msa0661820:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 4_3:-73389259 | Msa0661820:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 4_3:+73389336 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 4_3:-73391370 | Msa0661820:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 4_3:-73389301 | Msa0661820:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 4_3:+73389335 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 4_3:-73391035 | Msa0661820:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 4_3:-73391153 | Msa0661820:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 4_3:+73390091 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 4_3:-73391170 | Msa0661820:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 4_3:+73389158 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 4_3:-73391287 | Msa0661820:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 4_3:-73391005 | Msa0661820:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 4_3:-73391516 | Msa0661820:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 4_3:-73390017 | Msa0661820:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 4_3:-73389853 | Msa0661820:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 4_3:-73389258 | Msa0661820:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 4_3:-73391321 | Msa0661820:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 4_3:+73389505 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 4_3:+73391176 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 4_3:-73391383 | Msa0661820:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 4_3:-73390892 | Msa0661820:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 4_3:+73391065 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 4_3:-73391327 | Msa0661820:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 4_3:-73389491 | Msa0661820:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 4_3:+73390216 | None:intergenic |
| CTGTCTATGAACCATCTGTT+GGG | 0.491412 | 4_3:-73388866 | Msa0661820:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 4_3:-73389906 | Msa0661820:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 4_3:-73390879 | Msa0661820:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 4_3:-73389667 | Msa0661820:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 4_3:+73389587 | None:intergenic |
| GAAGCGATGGGTCAAGGAGT+TGG | 0.502080 | 4_3:-73390960 | Msa0661820:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 4_3:+73390787 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 4_3:+73391077 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 4_3:-73389820 | Msa0661820:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 4_3:-73389322 | Msa0661820:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 4_3:+73390921 | None:intergenic |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 4_3:-73389648 | Msa0661820:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 4_3:-73389802 | Msa0661820:CDS |
| TGTCTATAAGATATATAAGT+GGG | 0.514682 | 4_3:-73391117 | Msa0661820:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 4_3:+73389342 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 4_3:+73389699 | None:intergenic |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 4_3:-73389321 | Msa0661820:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 4_3:+73389510 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 4_3:-73388761 | Msa0661820:CDS |
| ACTTCAACAACGCACTAGCC+TGG | 0.534735 | 4_3:+73390071 | None:intergenic |
| GAGAACATCTTATGAAGCGA+TGG | 0.538371 | 4_3:-73390973 | Msa0661820:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 4_3:-73391276 | Msa0661820:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 4_3:+73389704 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 4_3:-73389490 | Msa0661820:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 4_3:-73391275 | Msa0661820:CDS |
| TCTTATGAAGCGATGGGTCA+AGG | 0.545849 | 4_3:-73390966 | Msa0661820:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 4_3:-73391451 | Msa0661820:CDS |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 4_3:-73389101 | Msa0661820:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 4_3:-73390825 | Msa0661820:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 4_3:-73391492 | Msa0661820:CDS |
| GCTGTCTATGAACCATCTGT+TGG | 0.568181 | 4_3:-73388867 | Msa0661820:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 4_3:-73389015 | Msa0661820:CDS |
| ATGTCTATAAGATATATAAG+TGG | 0.572287 | 4_3:-73391118 | Msa0661820:CDS |
| GCGATGGGTCAAGGAGTTGG+AGG | 0.575794 | 4_3:-73390957 | Msa0661820:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 4_3:+73389586 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 4_3:+73388855 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 4_3:-73388736 | Msa0661820:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 4_3:+73389565 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 4_3:-73391527 | Msa0661820:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 4_3:-73388974 | Msa0661820:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 4_3:-73388979 | Msa0661820:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 4_3:-73388674 | Msa0661820:three_prime_UTR |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.594796 | 4_3:-73389352 | Msa0661820:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 4_3:+73388899 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 4_3:-73390886 | Msa0661820:CDS |
| GAGGCTTTAACAATTTAAGC+GGG | 0.600751 | 4_3:-73388717 | Msa0661820:exon |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 4_3:+73389067 | None:intergenic |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 4_3:-73390883 | Msa0661820:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 4_3:-73389012 | Msa0661820:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 4_3:-73389589 | Msa0661820:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 4_3:-73389504 | Msa0661820:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 4_3:+73391227 | None:intergenic |
| AGAACATCTTATGAAGCGAT+GGG | 0.621635 | 4_3:-73390972 | Msa0661820:CDS |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 4_3:+73389851 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.624321 | 4_3:-73390952 | Msa0661820:CDS |
| TGAGGCTTTAACAATTTAAG+CGG | 0.627823 | 4_3:-73388718 | Msa0661820:exon |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 4_3:+73389337 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 4_3:-73390016 | Msa0661820:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 4_3:+73389094 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 4_3:-73389666 | Msa0661820:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 4_3:+73389116 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 4_3:+73389545 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 4_3:-73388990 | Msa0661820:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 4_3:+73389240 | None:intergenic |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 4_3:-73389257 | Msa0661820:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 4_3:-73389406 | Msa0661820:CDS |
| TCAAACCATATACACAGACC+AGG | 0.683597 | 4_3:-73390089 | Msa0661820:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 4_3:-73389405 | Msa0661820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATGTTATAAGTT+AGG | - | chr4_3:73391464-73391483 | Msa0661820:CDS | 10.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr4_3:73388768-73388787 | Msa0661820:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr4_3:73388824-73388843 | Msa0661820:CDS | 20.0% |
| !! | ATGTCTATAAGATATATAAG+TGG | - | chr4_3:73389033-73389052 | Msa0661820:CDS | 20.0% |
| !! | TGTCTATAAGATATATAAGT+GGG | - | chr4_3:73389034-73389053 | Msa0661820:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr4_3:73389623-73389642 | Msa0661820:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr4_3:73389651-73389670 | Msa0661820:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr4_3:73390273-73390292 | Msa0661820:intron | 20.0% |
| !! | AATTCTTGATTGTTATGTAT+TGG | - | chr4_3:73391562-73391581 | Msa0661820:five_prime_UTR | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr4_3:73388659-73388678 | Msa0661820:three_prime_UTR | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | chr4_3:73388700-73388719 | Msa0661820:three_prime_UTR | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr4_3:73388820-73388839 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr4_3:73388830-73388849 | Msa0661820:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr4_3:73389146-73389165 | Msa0661820:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr4_3:73389468-73389487 | Msa0661820:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr4_3:73389494-73389513 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGATTGTTC+TGG | - | chr4_3:73389541-73389560 | Msa0661820:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr4_3:73389643-73389662 | Msa0661820:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr4_3:73389650-73389669 | Msa0661820:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr4_3:73389899-73389918 | Msa0661820:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr4_3:73390111-73390130 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr4_3:73390203-73390222 | Msa0661820:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr4_3:73390277-73390296 | Msa0661820:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr4_3:73390470-73390489 | Msa0661820:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr4_3:73390609-73390628 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr4_3:73390644-73390663 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr4_3:73390644-73390663 | Msa0661820:intron | 25.0% |
| !! | CAAAGTTTTCACAATTGAAA+AGG | - | chr4_3:73390704-73390723 | Msa0661820:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr4_3:73390745-73390764 | Msa0661820:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr4_3:73390746-73390765 | Msa0661820:CDS | 25.0% |
| ATATTAACTTCATCTGAGAG+TGG | - | chr4_3:73388624-73388643 | Msa0661820:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr4_3:73388710-73388729 | Msa0661820:exon | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr4_3:73388875-73388894 | Msa0661820:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr4_3:73388876-73388895 | Msa0661820:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr4_3:73388965-73388984 | Msa0661820:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr4_3:73388998-73389017 | Msa0661820:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr4_3:73389077-73389096 | None:intergenic | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr4_3:73389223-73389242 | Msa0661820:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr4_3:73389233-73389252 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr4_3:73389347-73389366 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | chr4_3:73389381-73389400 | Msa0661820:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | chr4_3:73389382-73389401 | Msa0661820:CDS | 30.0% |
| CAACAAGATTATGCTCTATT+TGG | - | chr4_3:73389419-73389438 | Msa0661820:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr4_3:73389472-73389491 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr4_3:73389476-73389495 | Msa0661820:CDS | 30.0% | |
| !! | TTGTTCTGGTTTAGAATTGA+AGG | - | chr4_3:73389555-73389574 | Msa0661820:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr4_3:73389580-73389599 | Msa0661820:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr4_3:73389714-73389733 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr4_3:73389858-73389877 | Msa0661820:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr4_3:73389938-73389957 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr4_3:73390052-73390071 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr4_3:73390102-73390121 | Msa0661820:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr4_3:73390114-73390133 | Msa0661820:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr4_3:73390159-73390178 | Msa0661820:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr4_3:73390244-73390263 | Msa0661820:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr4_3:73390245-73390264 | Msa0661820:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr4_3:73390455-73390474 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr4_3:73390589-73390608 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr4_3:73390649-73390668 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr4_3:73390647-73390666 | Msa0661820:intron | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | + | chr4_3:73390817-73390836 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr4_3:73390818-73390837 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr4_3:73390829-73390848 | Msa0661820:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr4_3:73390830-73390849 | Msa0661820:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr4_3:73390926-73390945 | Msa0661820:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr4_3:73390929-73390948 | Msa0661820:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr4_3:73390994-73391013 | Msa0661820:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr4_3:73391161-73391180 | Msa0661820:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr4_3:73391209-73391228 | Msa0661820:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr4_3:73391317-73391336 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr4_3:73391324-73391343 | Msa0661820:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr4_3:73391335-73391354 | None:intergenic | 30.0% | |
| ! | TGAGGCTTTAACAATTTAAG+CGG | - | chr4_3:73391433-73391452 | Msa0661820:CDS | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr4_3:73391477-73391496 | Msa0661820:CDS | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr4_3:73391495-73391514 | Msa0661820:CDS | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr4_3:73388596-73388615 | Msa0661820:three_prime_UTR | 35.0% |
| ATAACACTGGATTCTCTGTT+AGG | - | chr4_3:73388781-73388800 | Msa0661820:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr4_3:73388864-73388883 | Msa0661820:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr4_3:73388901-73388920 | Msa0661820:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr4_3:73388942-73388961 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr4_3:73388959-73388978 | Msa0661820:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr4_3:73388964-73388983 | Msa0661820:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr4_3:73389116-73389135 | Msa0661820:CDS | 35.0% | |
| AGAACATCTTATGAAGCGAT+GGG | - | chr4_3:73389179-73389198 | Msa0661820:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr4_3:73389259-73389278 | Msa0661820:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr4_3:73389561-73389580 | Msa0661820:CDS | 35.0% |
| CATAAATTCCAAGGCAAGAT+AGG | + | chr4_3:73389681-73389700 | None:intergenic | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | chr4_3:73389690-73389709 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr4_3:73389955-73389974 | Msa0661820:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr4_3:73389998-73390017 | Msa0661820:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr4_3:73390127-73390146 | Msa0661820:CDS | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr4_3:73390287-73390306 | Msa0661820:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr4_3:73390331-73390350 | Msa0661820:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr4_3:73390344-73390363 | Msa0661820:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr4_3:73390414-73390433 | Msa0661820:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr4_3:73390484-73390503 | Msa0661820:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr4_3:73390485-73390504 | Msa0661820:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr4_3:73390767-73390786 | Msa0661820:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr4_3:73390819-73390838 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr4_3:73390936-73390955 | Msa0661820:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr4_3:73390996-73391015 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr4_3:73390997-73391016 | Msa0661820:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr4_3:73391263-73391282 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr4_3:73391390-73391409 | Msa0661820:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr4_3:73391415-73391434 | Msa0661820:CDS | 35.0% | |
| ! | GAGGCTTTAACAATTTAAGC+GGG | - | chr4_3:73391434-73391453 | Msa0661820:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr4_3:73388635-73388654 | Msa0661820:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr4_3:73388915-73388934 | None:intergenic | 40.0% |
| GAGAACATCTTATGAAGCGA+TGG | - | chr4_3:73389178-73389197 | Msa0661820:CDS | 40.0% | |
| TCCATCTGCCCAAAAAATAC+TGG | + | chr4_3:73389393-73389412 | None:intergenic | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | chr4_3:73389694-73389713 | Msa0661820:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr4_3:73389804-73389823 | Msa0661820:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr4_3:73389808-73389827 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr4_3:73389922-73389941 | Msa0661820:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr4_3:73390063-73390082 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr4_3:73390062-73390081 | Msa0661820:CDS | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr4_3:73390343-73390362 | Msa0661820:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr4_3:73390450-73390469 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr4_3:73390512-73390531 | Msa0661820:intron | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr4_3:73390660-73390679 | Msa0661820:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr4_3:73390661-73390680 | Msa0661820:intron | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr4_3:73390799-73390818 | Msa0661820:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr4_3:73390892-73390911 | Msa0661820:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr4_3:73390893-73390912 | Msa0661820:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr4_3:73390939-73390958 | Msa0661820:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr4_3:73391038-73391057 | None:intergenic | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | chr4_3:73391050-73391069 | Msa0661820:CDS | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | chr4_3:73391060-73391079 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr4_3:73391063-73391082 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr4_3:73391087-73391106 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr4_3:73391172-73391191 | Msa0661820:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr4_3:73391255-73391274 | None:intergenic | 40.0% |
| CTGTCTATGAACCATCTGTT+GGG | - | chr4_3:73391285-73391304 | Msa0661820:CDS | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr4_3:73391341-73391360 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr4_3:73391403-73391422 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr4_3:73388927-73388946 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr4_3:73388969-73388988 | Msa0661820:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr4_3:73388978-73388997 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr4_3:73388981-73389000 | Msa0661820:CDS | 45.0% |
| CTCAAGTAGCACAAATGCTC+TGG | + | chr4_3:73389089-73389108 | None:intergenic | 45.0% | |
| TCTTATGAAGCGATGGGTCA+AGG | - | chr4_3:73389185-73389204 | Msa0661820:CDS | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr4_3:73389265-73389284 | Msa0661820:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr4_3:73389268-73389287 | Msa0661820:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr4_3:73389326-73389345 | Msa0661820:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr4_3:73389367-73389386 | None:intergenic | 45.0% | |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr4_3:73389389-73389408 | Msa0661820:CDS | 45.0% |
| ! | ACTAGCCTGGTCTGTGTATA+TGG | + | chr4_3:73390070-73390089 | None:intergenic | 45.0% |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr4_3:73390303-73390322 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr4_3:73390349-73390368 | Msa0661820:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr4_3:73390366-73390385 | Msa0661820:intron | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr4_3:73390503-73390522 | Msa0661820:intron | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr4_3:73390562-73390581 | Msa0661820:intron | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr4_3:73390812-73390831 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr4_3:73390894-73390913 | Msa0661820:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr4_3:73390914-73390933 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr4_3:73391184-73391203 | Msa0661820:CDS | 45.0% | |
| GCTGTCTATGAACCATCTGT+TGG | - | chr4_3:73391284-73391303 | Msa0661820:CDS | 45.0% | |
| TGGGTGATCCTATCTTGCCT+TGG | - | chr4_3:73389670-73389689 | Msa0661820:CDS | 50.0% | |
| ACTTCAACAACGCACTAGCC+TGG | + | chr4_3:73390083-73390102 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr4_3:73390134-73390153 | Msa0661820:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr4_3:73390135-73390154 | Msa0661820:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr4_3:73390298-73390317 | Msa0661820:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr4_3:73390567-73390586 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr4_3:73390850-73390869 | Msa0661820:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr4_3:73391136-73391155 | Msa0661820:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr4_3:73391177-73391196 | Msa0661820:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr4_3:73391299-73391318 | None:intergenic | 50.0% |
| GAAGCGATGGGTCAAGGAGT+TGG | - | chr4_3:73389191-73389210 | Msa0661820:CDS | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr4_3:73389272-73389291 | Msa0661820:CDS | 55.0% |
| GGACCGCATAAGCTGACTGT+TGG | + | chr4_3:73390568-73390587 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr4_3:73391176-73391195 | Msa0661820:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr4_3:73391190-73391209 | Msa0661820:CDS | 55.0% | |
| GCGATGGGTCAAGGAGTTGG+AGG | - | chr4_3:73389194-73389213 | Msa0661820:CDS | 60.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr4_3:73389199-73389218 | Msa0661820:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr4_3:73391139-73391158 | Msa0661820:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 73388570 | 73391603 | 73388570 | ID=Msa0661820;Name=Msa0661820 |
| chr4_3 | mRNA | 73388570 | 73391603 | 73388570 | ID=Msa0661820-mRNA-1;Parent=Msa0661820;Name=Msa0661820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
| chr4_3 | exon | 73388570 | 73390241 | 73388570 | ID=Msa0661820-mRNA-1:exon:22189;Parent=Msa0661820-mRNA-1 |
| chr4_3 | exon | 73390676 | 73391603 | 73390676 | ID=Msa0661820-mRNA-1:exon:22188;Parent=Msa0661820-mRNA-1 |
| chr4_3 | five_prime_UTR | 73391559 | 73391603 | 73391559 | ID=Msa0661820-mRNA-1:five_prime_utr;Parent=Msa0661820-mRNA-1 |
| chr4_3 | CDS | 73390676 | 73391558 | 73390676 | ID=Msa0661820-mRNA-1:cds;Parent=Msa0661820-mRNA-1 |
| chr4_3 | CDS | 73388722 | 73390241 | 73388722 | ID=Msa0661820-mRNA-1:cds;Parent=Msa0661820-mRNA-1 |
| chr4_3 | three_prime_UTR | 73388570 | 73388721 | 73388570 | ID=Msa0661820-mRNA-1:three_prime_utr;Parent=Msa0661820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
