Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662620 | XP_013450454.1 | 94.554 | 202 | 0 | 1 | 1 | 191 | 1 | 202 | 1.64e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662620 | sp|Q9CPW7|ZMAT2_MOUSE | 45.226 | 199 | 89 | 6 | 8 | 190 | 3 | 197 | 3.83e-42 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662620 | A0A072U456 | 94.554 | 202 | 0 | 1 | 1 | 191 | 1 | 202 | 7.83e-134 | 382 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0662620 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662620 | MtrunA17_Chr7g0271741 | 94.554 | 202 | 0 | 1 | 1 | 191 | 1 | 202 | 1.51e-137 | 382 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662620 | AT3G05760.1 | 66.834 | 199 | 53 | 2 | 5 | 190 | 3 | 201 | 1.28e-83 | 246 |
| Msa0662620 | AT3G05760.2 | 71.329 | 143 | 30 | 1 | 5 | 136 | 3 | 145 | 1.54e-71 | 214 |
Find 70 sgRNAs with CRISPR-Local
Find 296 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTATCTTTCATTTGATAAT+AGG | 0.204827 | 4_4:-366094 | None:intergenic |
| TCCTGACGTTGCTGCCTTGA+TGG | 0.273991 | 4_4:+365927 | Msa0662620:CDS |
| AACTACTTGGATCATATTAA+TGG | 0.276389 | 4_4:+364371 | Msa0662620:CDS |
| GCAACGTCAGGATCCATTTC+AGG | 0.287879 | 4_4:-365916 | None:intergenic |
| TGAGACAGAAAATTTGAATT+GGG | 0.295777 | 4_4:-362215 | None:intergenic |
| GTTTGGTTCCGGGTGGCTTT+AGG | 0.299311 | 4_4:+366066 | Msa0662620:three_prime_UTR |
| TAAGCGATTCTAGAGAAAAT+TGG | 0.299955 | 4_4:-362314 | None:intergenic |
| GGTAGCTAACAGTTTGGTTC+CGG | 0.318971 | 4_4:+366055 | Msa0662620:three_prime_UTR |
| TTGAGACAGAAAATTTGAAT+TGG | 0.321223 | 4_4:-362216 | None:intergenic |
| GTAGCTAACAGTTTGGTTCC+GGG | 0.352019 | 4_4:+366056 | Msa0662620:three_prime_UTR |
| GTTATATTTATTCACAAGAT+TGG | 0.352491 | 4_4:+366153 | Msa0662620:three_prime_UTR |
| GTTGCTGCCTTGATGGGGTT+TGG | 0.376323 | 4_4:+365934 | Msa0662620:CDS |
| CCTGACGTTGCTGCCTTGAT+GGG | 0.380236 | 4_4:+365928 | Msa0662620:CDS |
| ATTAAATCGAATATTCATAA+TGG | 0.385619 | 4_4:-366293 | None:intergenic |
| CTGCAATGTTGAGCAGAATC+TGG | 0.389037 | 4_4:+366034 | Msa0662620:three_prime_UTR |
| AGAAAGAAAGCGACTGCGTC+GGG | 0.394814 | 4_4:+365616 | Msa0662620:CDS |
| TCATAATCTCTATGTTTCAA+TGG | 0.398737 | 4_4:-362729 | None:intergenic |
| AATTGAACTTACACTGTTGC+TGG | 0.398841 | 4_4:-362376 | None:intergenic |
| CTTGCTCTGTAAAGCTTCCT+AGG | 0.401772 | 4_4:-365220 | None:intergenic |
| GTCACTCCCCACATAGATAA+TGG | 0.418680 | 4_4:-366247 | None:intergenic |
| TCAAGTACCTGTTGGCTTAG+TGG | 0.422359 | 4_4:-363132 | None:intergenic |
| ATTATCAAATGAAAGATAGT+TGG | 0.424466 | 4_4:+366097 | Msa0662620:three_prime_UTR |
| AGCAGTAGAAGAACCTGAAA+TGG | 0.433262 | 4_4:+365903 | Msa0662620:CDS |
| TCCACAGATCAGAGAGCGTT+GGG | 0.434413 | 4_4:+364494 | Msa0662620:intron |
| ATTCGGTTGAATTAGGCCGC+TGG | 0.437263 | 4_4:+362457 | Msa0662620:intron |
| CCCATCAAGGCAGCAACGTC+AGG | 0.440366 | 4_4:-365928 | None:intergenic |
| TGCTCGTGAGCGTGAGAGAC+AGG | 0.449139 | 4_4:+362531 | Msa0662620:CDS |
| TGAACGTTCTTCTCTCAAAC+AGG | 0.469716 | 4_4:+364532 | Msa0662620:CDS |
| GAATCTGGTAGCTAACAGTT+TGG | 0.476202 | 4_4:+366049 | Msa0662620:three_prime_UTR |
| TTCGGTTGAATTAGGCCGCT+GGG | 0.484855 | 4_4:+362458 | Msa0662620:intron |
| TTATCAAATGAAAGATAGTT+GGG | 0.486371 | 4_4:+366098 | Msa0662620:three_prime_UTR |
| TTCAATGGCTTCCTCTGCAC+CGG | 0.489779 | 4_4:-362714 | None:intergenic |
| GAGACAGAAAATTTGAATTG+GGG | 0.499465 | 4_4:-362214 | None:intergenic |
| GAAGGACTCAGCAAACTACT+TGG | 0.508744 | 4_4:+364358 | Msa0662620:CDS |
| ATTATCTACCATTATCTATG+TGG | 0.510016 | 4_4:+366239 | Msa0662620:three_prime_UTR |
| TTATCTACCATTATCTATGT+GGG | 0.519180 | 4_4:+366240 | Msa0662620:three_prime_UTR |
| GGTTGCACCACTAAGCCAAC+AGG | 0.522528 | 4_4:+363125 | Msa0662620:CDS |
| GAAGAGAAAGCAAAACCTAA+AGG | 0.524374 | 4_4:+362556 | Msa0662620:CDS |
| AAGAAAGAAAGCGACTGCGT+CGG | 0.529732 | 4_4:+365615 | Msa0662620:CDS |
| GGTTTGAAAATCTGAAGAAA+CGG | 0.530251 | 4_4:+365192 | Msa0662620:CDS |
| TGTTGGCTTAGTGGTGCAAC+CGG | 0.533524 | 4_4:-363123 | None:intergenic |
| ATATATAGGTAGAGGTCCTC+CGG | 0.536652 | 4_4:+362695 | Msa0662620:intron |
| TTCCACAGATCAGAGAGCGT+TGG | 0.536771 | 4_4:+364493 | Msa0662620:intron |
| GACAGAAAATTTGAATTGGG+GGG | 0.537305 | 4_4:-362212 | None:intergenic |
| GCTGCCTTGATGGGGTTTGG+AGG | 0.549348 | 4_4:+365937 | Msa0662620:CDS |
| GTAGAGGTCCTCCGGTGCAG+AGG | 0.551585 | 4_4:+362703 | Msa0662620:CDS |
| AGTTTGTGAGTGCGTGGTGA+AGG | 0.552418 | 4_4:+364340 | Msa0662620:CDS |
| CTAGGAAGCTTTACAGAGCA+AGG | 0.559657 | 4_4:+365221 | Msa0662620:CDS |
| AATGGCTTCCTCTGCACCGG+AGG | 0.560400 | 4_4:-362711 | None:intergenic |
| CTGACGTTGCTGCCTTGATG+GGG | 0.560761 | 4_4:+365929 | Msa0662620:CDS |
| CTGAAGAAACGGAAAGACCT+AGG | 0.564143 | 4_4:+365203 | Msa0662620:CDS |
| ATTAAAACAGCAACAAGAAG+AGG | 0.569720 | 4_4:+365592 | Msa0662620:CDS |
| AGTCGGCTAAATGCTTTGCA+AGG | 0.575173 | 4_4:+366321 | Msa0662620:three_prime_UTR |
| AGTGACATTCTTCTACATGT+AGG | 0.577705 | 4_4:+365980 | Msa0662620:exon |
| AAAACCTCCAAACCCCATCA+AGG | 0.581455 | 4_4:-365941 | None:intergenic |
| AGACAGAAAATTTGAATTGG+GGG | 0.585578 | 4_4:-362213 | None:intergenic |
| ATAGTTTGCAAGCTGGTCCA+TGG | 0.590834 | 4_4:+366129 | Msa0662620:three_prime_UTR |
| TCAAACAATAGTTTGCAAGC+TGG | 0.607176 | 4_4:+366122 | Msa0662620:three_prime_UTR |
| GTCGGCTAAATGCTTTGCAA+GGG | 0.612786 | 4_4:+366322 | Msa0662620:three_prime_UTR |
| TAATGGATATCTCTGAGCCA+TGG | 0.626704 | 4_4:-366276 | None:intergenic |
| CTGCTCAGTTTGTGAGTGCG+TGG | 0.632386 | 4_4:+364334 | Msa0662620:CDS |
| GATGAACGCAGGTTCAGGAA+CGG | 0.633829 | 4_4:+365171 | Msa0662620:intron |
| TCGGTTGAATTAGGCCGCTG+GGG | 0.650254 | 4_4:+362459 | Msa0662620:intron |
| AGGTTCATCCTAAAGCCACC+CGG | 0.661880 | 4_4:-366074 | None:intergenic |
| TGAACTTACACTGTTGCTGG+TGG | 0.666094 | 4_4:-362373 | None:intergenic |
| TATCTACCATTATCTATGTG+GGG | 0.669135 | 4_4:+366241 | Msa0662620:three_prime_UTR |
| TGTGAATAAATATAACACCA+TGG | 0.670508 | 4_4:-366146 | None:intergenic |
| GAATGTGTTGTCAACCCCAG+CGG | 0.671454 | 4_4:-362473 | None:intergenic |
| GCTAACAGTTTGGTTCCGGG+TGG | 0.693222 | 4_4:+366059 | Msa0662620:three_prime_UTR |
| TGGGGAGTGACAAATTGCCA+TGG | 0.709290 | 4_4:+366259 | Msa0662620:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr4_4:362653-362672 | Msa0662620:intron | 0.0% |
| !! | TTCAAATTAATAATTTGATT+CGG | + | chr4_4:362440-362459 | Msa0662620:intron | 10.0% |
| !! | AAAAAGTGAACTTTAATATT+GGG | - | chr4_4:362409-362428 | None:intergenic | 15.0% |
| !! | AAAAAAGTGAACTTTAATAT+TGG | - | chr4_4:362410-362429 | None:intergenic | 15.0% |
| !! | ATATATATATATATAGGTAG+AGG | + | chr4_4:362687-362706 | Msa0662620:intron | 15.0% |
| !!! | TAAATTTTAGAAATGATCTT+AGG | + | chr4_4:363638-363657 | Msa0662620:intron | 15.0% |
| !!! | AAATTTTAGAAATGATCTTA+GGG | + | chr4_4:363639-363658 | Msa0662620:intron | 15.0% |
| !!! | TTTTATGTTGGTTAAAAATA+TGG | + | chr4_4:363803-363822 | Msa0662620:intron | 15.0% |
| !!! | TTTATGTTGGTTAAAAATAT+GGG | + | chr4_4:363804-363823 | Msa0662620:intron | 15.0% |
| !!! | TAAATTTTAGAAATGATCTT+AGG | + | chr4_4:363638-363657 | Msa0662620:intron | 15.0% |
| !!! | AAATTTTAGAAATGATCTTA+GGG | + | chr4_4:363639-363658 | Msa0662620:intron | 15.0% |
| !! | ATATACATTATTAAATCCAA+TGG | - | chr4_4:364298-364317 | None:intergenic | 15.0% |
| !!! | TGTTTATTTATTTCATTTTC+TGG | - | chr4_4:364574-364593 | None:intergenic | 15.0% |
| !!! | ATTTTGATATTTACAGATTT+GGG | + | chr4_4:364604-364623 | Msa0662620:intron | 15.0% |
| !! | AACTTACCTAATAATAATTA+GGG | - | chr4_4:364850-364869 | None:intergenic | 15.0% |
| !!! | TTGATCTATAACTAAAATTT+TGG | + | chr4_4:365367-365386 | Msa0662620:intron | 15.0% |
| !! | ATTAAATCGAATATTCATAA+TGG | - | chr4_4:366296-366315 | None:intergenic | 15.0% |
| !!! | ATTTTATGTTGTAGACTTTT+AGG | + | chr4_4:363005-363024 | Msa0662620:intron | 20.0% |
| !!! | AACTTTGCTTGTTAAAAATA+TGG | + | chr4_4:363334-363353 | Msa0662620:intron | 20.0% |
| !!! | ACTTTGCTTGTTAAAAATAT+GGG | + | chr4_4:363335-363354 | Msa0662620:intron | 20.0% |
| !! | ATATTGTAATGTCTAGAAAA+GGG | - | chr4_4:363564-363583 | None:intergenic | 20.0% |
| !! | AATATTGTAATGTCTAGAAA+AGG | - | chr4_4:363565-363584 | None:intergenic | 20.0% |
| !! | TCATAACTGTGTTATATATT+AGG | + | chr4_4:363665-363684 | Msa0662620:intron | 20.0% |
| !! | CATAACTGTGTTATATATTA+GGG | + | chr4_4:363666-363685 | Msa0662620:intron | 20.0% |
| !! | AACGAAAAGATTAATCATAT+AGG | - | chr4_4:363758-363777 | None:intergenic | 20.0% |
| !! | TTAACCAACATAAAATCTAA+AGG | - | chr4_4:363798-363817 | None:intergenic | 20.0% |
| !!! | TCTTTTTCCAAATTATATGT+GGG | + | chr4_4:363927-363946 | Msa0662620:intron | 20.0% |
| !! | ATCAAAAAGATTATCCATAT+AGG | - | chr4_4:364258-364277 | None:intergenic | 20.0% |
| !! | GATTTAATAATGTATATTGC+AGG | + | chr4_4:364301-364320 | Msa0662620:intron | 20.0% |
| !! | CAAATCTGTAAATATCAAAA+TGG | - | chr4_4:364605-364624 | None:intergenic | 20.0% |
| !!! | CATTTTGATATTTACAGATT+TGG | + | chr4_4:364603-364622 | Msa0662620:intron | 20.0% |
| !! | ACTTACCTAATAATAATTAG+GGG | - | chr4_4:364849-364868 | None:intergenic | 20.0% |
| !! | CAACTTACCTAATAATAATT+AGG | - | chr4_4:364851-364870 | None:intergenic | 20.0% |
| !!! | TTTTTTCAGATTTTGATGAA+AGG | + | chr4_4:365567-365586 | Msa0662620:intron | 20.0% |
| !! | TCAATTAGAATACAAAATCT+TGG | + | chr4_4:365690-365709 | Msa0662620:intron | 20.0% |
| !!! | ACTATCTTTCATTTGATAAT+AGG | - | chr4_4:366097-366116 | None:intergenic | 20.0% |
| !! | ATTATCAAATGAAAGATAGT+TGG | + | chr4_4:366097-366116 | Msa0662620:three_prime_UTR | 20.0% |
| !! | TTATCAAATGAAAGATAGTT+GGG | + | chr4_4:366098-366117 | Msa0662620:three_prime_UTR | 20.0% |
| !! | GTTATATTTATTCACAAGAT+TGG | + | chr4_4:366153-366172 | Msa0662620:three_prime_UTR | 20.0% |
| !!! | ATTCGATTTAATTTTGTAGT+CGG | + | chr4_4:366304-366323 | Msa0662620:three_prime_UTR | 20.0% |
| ! | TGAGACAGAAAATTTGAATT+GGG | - | chr4_4:362218-362237 | None:intergenic | 25.0% |
| ! | TTGAGACAGAAAATTTGAAT+TGG | - | chr4_4:362219-362238 | None:intergenic | 25.0% |
| ! | AAAAAAAGAATGATGTGTGA+AGG | - | chr4_4:362260-362279 | None:intergenic | 25.0% |
| !!! | TAATTTGATTCGGTTGAATT+AGG | + | chr4_4:362450-362469 | Msa0662620:intron | 25.0% |
| !! | TGTGAAATTAGTTTACCTTT+AGG | - | chr4_4:362574-362593 | None:intergenic | 25.0% |
| ! | TCATAATCTCTATGTTTCAA+TGG | - | chr4_4:362732-362751 | None:intergenic | 25.0% |
| !! | AAAAACTCAGGTATGTTTTA+AGG | + | chr4_4:362776-362795 | Msa0662620:intron | 25.0% |
| !!! | TATGTTTGCTTTTTTGAGTT+TGG | + | chr4_4:362968-362987 | Msa0662620:intron | 25.0% |
| ! | AATAAAAATCAAGTACCTGT+TGG | - | chr4_4:363143-363162 | None:intergenic | 25.0% |
| !!! | GTATTTGTGTACTTTGAAAT+TGG | + | chr4_4:363165-363184 | Msa0662620:intron | 25.0% |
| !!! | ATAGCCTTTATTTCTTTTGT+TGG | + | chr4_4:363255-363274 | Msa0662620:intron | 25.0% |
| !!! | TAGCCTTTATTTCTTTTGTT+GGG | + | chr4_4:363256-363275 | Msa0662620:intron | 25.0% |
| !! | AGTACCTTTAGATTTTATGT+TGG | + | chr4_4:363791-363810 | Msa0662620:intron | 25.0% |
| !! | CTCTTTTTCCAAATTATATG+TGG | + | chr4_4:363926-363945 | Msa0662620:intron | 25.0% |
| ! | TATTGCAATGTCTAGAAAAA+GGG | - | chr4_4:364063-364082 | None:intergenic | 25.0% |
| ! | ATATTGCAATGTCTAGAAAA+AGG | - | chr4_4:364064-364083 | None:intergenic | 25.0% |
| ! | TCATAACTCTGTTATATATC+AGG | + | chr4_4:364165-364184 | Msa0662620:intron | 25.0% |
| ! | CATAACTCTGTTATATATCA+GGG | + | chr4_4:364166-364185 | Msa0662620:intron | 25.0% |
| ! | AACTACTTGGATCATATTAA+TGG | + | chr4_4:364371-364390 | Msa0662620:CDS | 25.0% |
| ! | ATTAGAATTCATAGACTAGA+AGG | - | chr4_4:365014-365033 | None:intergenic | 25.0% |
| ! | TTCTAGTCTATGAATTCTAA+TGG | + | chr4_4:365013-365032 | Msa0662620:intron | 25.0% |
| ! | ACTTTAATGTCCATTATTCT+TGG | + | chr4_4:365297-365316 | Msa0662620:intron | 25.0% |
| ! | AATAAAGCTTCTACAATTTC+AGG | - | chr4_4:365323-365342 | None:intergenic | 25.0% |
| !!! | TCGTATTTTTGAATACTTCT+AGG | + | chr4_4:365431-365450 | Msa0662620:intron | 25.0% |
| ! | CATGTTGAAATTTCAAATGT+TGG | + | chr4_4:365479-365498 | Msa0662620:intron | 25.0% |
| ! | AAAATTCAATTTCCACACTA+AGG | - | chr4_4:365544-365563 | None:intergenic | 25.0% |
| ! | AAGAAACTGTAATCTGAATA+CGG | - | chr4_4:365666-365685 | None:intergenic | 25.0% |
| !!! | ATCACTTTTAGAAAGATAGA+TGG | - | chr4_4:365800-365819 | None:intergenic | 25.0% |
| ! | TGTGAATAAATATAACACCA+TGG | - | chr4_4:366149-366168 | None:intergenic | 25.0% |
| ! | ATTATCTACCATTATCTATG+TGG | + | chr4_4:366239-366258 | Msa0662620:three_prime_UTR | 25.0% |
| ! | TTATCTACCATTATCTATGT+GGG | + | chr4_4:366240-366259 | Msa0662620:three_prime_UTR | 25.0% |
| AGACAGAAAATTTGAATTGG+GGG | - | chr4_4:362216-362235 | None:intergenic | 30.0% | |
| GAGACAGAAAATTTGAATTG+GGG | - | chr4_4:362217-362236 | None:intergenic | 30.0% | |
| ! | TAAGCGATTCTAGAGAAAAT+TGG | - | chr4_4:362317-362336 | None:intergenic | 30.0% |
| TAAATCCTTGACATTCACTT+AGG | - | chr4_4:362882-362901 | None:intergenic | 30.0% | |
| AGTGAATGTCAAGGATTTAT+AGG | + | chr4_4:362883-362902 | Msa0662620:intron | 30.0% | |
| !! | AGCCTTTATTTCTTTTGTTG+GGG | + | chr4_4:363257-363276 | Msa0662620:intron | 30.0% |
| ! | ACCGTTTTCCAAATTATATG+TGG | + | chr4_4:363460-363479 | Msa0662620:intron | 30.0% |
| CCCACATATAATTTGGAAAA+CGG | - | chr4_4:363464-363483 | None:intergenic | 30.0% | |
| ! | CCGTTTTCCAAATTATATGT+GGG | + | chr4_4:363461-363480 | Msa0662620:intron | 30.0% |
| TTGTGATTTCAATTGTCTTG+TGG | + | chr4_4:363534-363553 | Msa0662620:intron | 30.0% | |
| TTGGAAAAAGAGAACTTTCA+GGG | - | chr4_4:363918-363937 | None:intergenic | 30.0% | |
| TTTGGAAAAAGAGAACTTTC+AGG | - | chr4_4:363919-363938 | None:intergenic | 30.0% | |
| TTGTGATATTAATTGTCTCG+TGG | + | chr4_4:364033-364052 | Msa0662620:intron | 30.0% | |
| TAATAATGTATATTGCAGGC+TGG | + | chr4_4:364305-364324 | Msa0662620:intron | 30.0% | |
| ! | AGAAACGTATGTAGTCTTTT+TGG | + | chr4_4:364396-364415 | Msa0662620:intron | 30.0% |
| !! | ACCTGATATCACTTTTATAG+AGG | - | chr4_4:364630-364649 | None:intergenic | 30.0% |
| !!! | TCTTTTTATTTTCAGAACCC+AGG | - | chr4_4:364653-364672 | None:intergenic | 30.0% |
| ATAATAATTAGGGGAGAGAA+GGG | - | chr4_4:364840-364859 | None:intergenic | 30.0% | |
| AATAATAATTAGGGGAGAGA+AGG | - | chr4_4:364841-364860 | None:intergenic | 30.0% | |
| TCTCTCCCCTAATTATTATT+AGG | + | chr4_4:364841-364860 | Msa0662620:intron | 30.0% | |
| ATAGGTTTCTTCTCTAGTAT+GGG | + | chr4_4:364957-364976 | Msa0662620:intron | 30.0% | |
| TCAAGCAATGTCAAAGATAA+TGG | - | chr4_4:365044-365063 | None:intergenic | 30.0% | |
| AGAAACCAAATGACACATAA+TGG | - | chr4_4:365108-365127 | None:intergenic | 30.0% | |
| GGTTTGAAAATCTGAAGAAA+CGG | + | chr4_4:365192-365211 | Msa0662620:CDS | 30.0% | |
| CAACTCTCTTCTATTATCTT+AGG | - | chr4_4:365252-365271 | None:intergenic | 30.0% | |
| CTAAGATAATAGAAGAGAGT+TGG | + | chr4_4:365250-365269 | Msa0662620:intron | 30.0% | |
| AATCTCCTTAATTGAAAGGT+CGG | - | chr4_4:365349-365368 | None:intergenic | 30.0% | |
| GATCAATCTCCTTAATTGAA+AGG | - | chr4_4:365353-365372 | None:intergenic | 30.0% | |
| ATTAAAACAGCAACAAGAAG+AGG | + | chr4_4:365592-365611 | Msa0662620:CDS | 30.0% | |
| TCGGGAAAAGAAAAAAGAAA+AGG | + | chr4_4:365634-365653 | Msa0662620:CDS | 30.0% | |
| !! | TTAATTGCTGCTTTGTGAAA+AGG | - | chr4_4:365851-365870 | None:intergenic | 30.0% |
| ! | CAATTTTTGCATTCAGAAGA+AGG | + | chr4_4:365879-365898 | Msa0662620:intron | 30.0% |
| !!! | AGAAGAATGTCACTTTTTGT+TGG | - | chr4_4:365974-365993 | None:intergenic | 30.0% |
| TATCTACCATTATCTATGTG+GGG | + | chr4_4:366241-366260 | Msa0662620:three_prime_UTR | 30.0% | |
| AATTTGAATTGGGGGGATTT+GGG | - | chr4_4:362208-362227 | None:intergenic | 35.0% | |
| AAATTTGAATTGGGGGGATT+TGG | - | chr4_4:362209-362228 | None:intergenic | 35.0% | |
| GACAGAAAATTTGAATTGGG+GGG | - | chr4_4:362215-362234 | None:intergenic | 35.0% | |
| GGAATTAGAATGATGTGTGA+AGG | - | chr4_4:362296-362315 | None:intergenic | 35.0% | |
| AATTGAACTTACACTGTTGC+TGG | - | chr4_4:362379-362398 | None:intergenic | 35.0% | |
| GAAGAGAAAGCAAAACCTAA+AGG | + | chr4_4:362556-362575 | Msa0662620:CDS | 35.0% | |
| TGTCTGGATTACTTTCTTTC+AGG | + | chr4_4:362802-362821 | Msa0662620:intron | 35.0% | |
| TTAAGCTGTGTATCCAAACA+GGG | + | chr4_4:362856-362875 | Msa0662620:intron | 35.0% | |
| TGAACGGTATGAACAAATCT+TGG | - | chr4_4:363057-363076 | None:intergenic | 35.0% | |
| ! | GATATCGTGTCATATTTTGC+AGG | + | chr4_4:363092-363111 | Msa0662620:intron | 35.0% |
| ! | TATTTTGCAGGTTGTAACAC+CGG | + | chr4_4:363104-363123 | Msa0662620:intron | 35.0% |
| CTCCCCAACAAAAGAAATAA+AGG | - | chr4_4:363262-363281 | None:intergenic | 35.0% | |
| !! | CTTTATTTCTTTTGTTGGGG+AGG | + | chr4_4:363260-363279 | Msa0662620:intron | 35.0% |
| ! | CAAAGTTTTCCAAATACCTG+TGG | + | chr4_4:363377-363396 | Msa0662620:intron | 35.0% |
| TTCCAAATTATATGTGGGCA+AGG | + | chr4_4:363466-363485 | Msa0662620:intron | 35.0% | |
| ! | ATCACTTGCTTGATCTTTTC+GGG | - | chr4_4:363492-363511 | None:intergenic | 35.0% |
| ! | GATCACTTGCTTGATCTTTT+CGG | - | chr4_4:363493-363512 | None:intergenic | 35.0% |
| ATCACAAAAAACACAGCCAA+TGG | - | chr4_4:363521-363540 | None:intergenic | 35.0% | |
| CACAGGAATTTGGAAAACTT+TGG | - | chr4_4:363848-363867 | None:intergenic | 35.0% | |
| ! | CAAAGTTTTCCAAATTCCTG+TGG | + | chr4_4:363846-363865 | Msa0662620:intron | 35.0% |
| GATTATCCATATAGGATCCT+TGG | - | chr4_4:364250-364269 | None:intergenic | 35.0% | |
| AATAACCATGAGCAAAGTGA+CGG | - | chr4_4:364464-364483 | None:intergenic | 35.0% | |
| TCAAACAGGTACAGTGATAT+AGG | + | chr4_4:364546-364565 | Msa0662620:intron | 35.0% | |
| GCCTCTATAAAAGTGATATC+AGG | + | chr4_4:364626-364645 | Msa0662620:intron | 35.0% | |
| ATAAAAGTGATATCAGGTCC+TGG | + | chr4_4:364632-364651 | Msa0662620:intron | 35.0% | |
| TAAAAGTGATATCAGGTCCT+GGG | + | chr4_4:364633-364652 | Msa0662620:intron | 35.0% | |
| CATAGGTTTCTTCTCTAGTA+TGG | + | chr4_4:364956-364975 | Msa0662620:intron | 35.0% | |
| ! | CAATGTCAAAGATAATGGCA+TGG | - | chr4_4:365039-365058 | None:intergenic | 35.0% |
| ! | GTGTTCCATTATGTGTCATT+TGG | + | chr4_4:365100-365119 | Msa0662620:intron | 35.0% |
| GATTTATAACTGTCATGCAG+AGG | - | chr4_4:365146-365165 | None:intergenic | 35.0% | |
| TAAATCTTTGTGATGAACGC+AGG | + | chr4_4:365160-365179 | Msa0662620:intron | 35.0% | |
| CAATTTCAGGCCAAGAATAA+TGG | - | chr4_4:365310-365329 | None:intergenic | 35.0% | |
| TTCAACCGACCTTTCAATTA+AGG | + | chr4_4:365341-365360 | Msa0662620:intron | 35.0% | |
| AGTGACATTCTTCTACATGT+AGG | + | chr4_4:365980-365999 | Msa0662620:exon | 35.0% | |
| ! | TCAAACAATAGTTTGCAAGC+TGG | + | chr4_4:366122-366141 | Msa0662620:three_prime_UTR | 35.0% |
| ATATATAGGTAGAGGTCCTC+CGG | + | chr4_4:362695-362714 | Msa0662620:intron | 40.0% | |
| ! | ATACCTGAGTTTTTCCCAAG+CGG | - | chr4_4:362770-362789 | None:intergenic | 40.0% |
| !!! | GTATGTTTTAAGGCTCTGTC+TGG | + | chr4_4:362786-362805 | Msa0662620:intron | 40.0% |
| GTTAAGCTGTGTATCCAAAC+AGG | + | chr4_4:362855-362874 | Msa0662620:intron | 40.0% | |
| !! | TGTTGTAGACTTTTAGGTCG+TGG | + | chr4_4:363011-363030 | Msa0662620:intron | 40.0% |
| !! | GTTGTAGACTTTTAGGTCGT+GGG | + | chr4_4:363012-363031 | Msa0662620:intron | 40.0% |
| !! | TTGTAGACTTTTAGGTCGTG+GGG | + | chr4_4:363013-363032 | Msa0662620:intron | 40.0% |
| !! | TGAACAAATCTTGGTGCTAG+TGG | - | chr4_4:363048-363067 | None:intergenic | 40.0% |
| AGGCTATCAAGAGAGTAAAG+AGG | - | chr4_4:363242-363261 | None:intergenic | 40.0% | |
| TGGAAAACGGTGAACTTTCA+TGG | - | chr4_4:363451-363470 | None:intergenic | 40.0% | |
| AGCAAGTGATCTTTCACCAT+TGG | + | chr4_4:363502-363521 | Msa0662620:intron | 40.0% | |
| !! | TGATTTTGACAACCTTGCGA+AGG | + | chr4_4:363730-363749 | Msa0662620:intron | 40.0% |
| ATCATATAGGATCCTTCGCA+AGG | - | chr4_4:363745-363764 | None:intergenic | 40.0% | |
| GGACTTGCCCACATATAATT+TGG | - | chr4_4:363937-363956 | None:intergenic | 40.0% | |
| !! | AAAGCTTTGGCTGTGTTTTG+TGG | + | chr4_4:364003-364022 | Msa0662620:intron | 40.0% |
| !! | AAGCTTTGGCTGTGTTTTGT+GGG | + | chr4_4:364004-364023 | Msa0662620:intron | 40.0% |
| !! | TGATTTTGACAACCTTGCCA+AGG | + | chr4_4:364230-364249 | Msa0662620:intron | 40.0% |
| TGCAACTTATGTAGCACCAT+TGG | + | chr4_4:364279-364298 | Msa0662620:intron | 40.0% | |
| TGAACGTTCTTCTCTCAAAC+AGG | + | chr4_4:364532-364551 | Msa0662620:CDS | 40.0% | |
| TGGAATCAGTTGGGACATTA+GGG | - | chr4_4:364705-364724 | None:intergenic | 40.0% | |
| TTGCATCTCATAGTCTGATC+TGG | + | chr4_4:364868-364887 | Msa0662620:intron | 40.0% | |
| GAGAAGAAGCCTATAAGATG+AGG | - | chr4_4:364912-364931 | None:intergenic | 40.0% | |
| GAGAAGAAACCTATGAGATG+AGG | - | chr4_4:364951-364970 | None:intergenic | 40.0% | |
| TAATGGAACACATGCATGCA+TGG | - | chr4_4:365091-365110 | None:intergenic | 40.0% | |
| TGACAGAACATCAAAGTGTG+TGG | - | chr4_4:365521-365540 | None:intergenic | 40.0% | |
| TCAGAGAGCTAGACAGAAAT+GGG | - | chr4_4:365736-365755 | None:intergenic | 40.0% | |
| ATCAGAGAGCTAGACAGAAA+TGG | - | chr4_4:365737-365756 | None:intergenic | 40.0% | |
| AGCAGTAGAAGAACCTGAAA+TGG | + | chr4_4:365903-365922 | Msa0662620:CDS | 40.0% | |
| GAATCTGGTAGCTAACAGTT+TGG | + | chr4_4:366049-366068 | Msa0662620:three_prime_UTR | 40.0% | |
| ! | TAATGGATATCTCTGAGCCA+TGG | - | chr4_4:366279-366298 | None:intergenic | 40.0% |
| TGAACTTACACTGTTGCTGG+TGG | - | chr4_4:362376-362395 | None:intergenic | 45.0% | |
| ! | TTTTTCCCAAGCGGGATTCA+AGG | - | chr4_4:362761-362780 | None:intergenic | 45.0% |
| ! | TACCTGAGTTTTTCCCAAGC+GGG | - | chr4_4:362769-362788 | None:intergenic | 45.0% |
| TCAGGCTATCTGCTGCTATA+AGG | + | chr4_4:362820-362839 | Msa0662620:intron | 45.0% | |
| ACATTCACTTAGGCCCTGTT+TGG | - | chr4_4:362872-362891 | None:intergenic | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | + | chr4_4:362910-362929 | Msa0662620:intron | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | + | chr4_4:362911-362930 | Msa0662620:intron | 45.0% | |
| TGATCCCACTTAGTGGGATA+TGG | + | chr4_4:362917-362936 | Msa0662620:intron | 45.0% | |
| CAAGCCATATCCCACTAAGT+GGG | - | chr4_4:362924-362943 | None:intergenic | 45.0% | |
| !! | ACAAATCTTGGTGCTAGTGG+AGG | - | chr4_4:363045-363064 | None:intergenic | 45.0% |
| CTCTCATCAGTACAGCTGAA+CGG | - | chr4_4:363073-363092 | None:intergenic | 45.0% | |
| !! | TCAAGTACCTGTTGGCTTAG+TGG | - | chr4_4:363135-363154 | None:intergenic | 45.0% |
| !! | TTCTTTTGTTGGGGAGGTGT+TGG | + | chr4_4:363266-363285 | Msa0662620:intron | 45.0% |
| !!! | TCTTTTGTTGGGGAGGTGTT+GGG | + | chr4_4:363267-363286 | Msa0662620:intron | 45.0% |
| CTGACAAGTCCACAGGTATT+TGG | - | chr4_4:363389-363408 | None:intergenic | 45.0% | |
| AATACCTGTGGACTTGTCAG+TGG | + | chr4_4:363389-363408 | Msa0662620:intron | 45.0% | |
| ATACCTGTGGACTTGTCAGT+GGG | + | chr4_4:363390-363409 | Msa0662620:intron | 45.0% | |
| GGCCTTGCCCACATATAATT+TGG | - | chr4_4:363471-363490 | None:intergenic | 45.0% | |
| CCAAATTCCTGTGGACTTGT+CGG | + | chr4_4:363855-363874 | Msa0662620:intron | 45.0% | |
| !! | ATCACTCGCTTGGTCTTTTC+GGG | - | chr4_4:363958-363977 | None:intergenic | 45.0% |
| !! | GATCACTCGCTTGGTCTTTT+CGG | - | chr4_4:363959-363978 | None:intergenic | 45.0% |
| ATGGTGAAAGATCACTCGCT+TGG | - | chr4_4:363968-363987 | None:intergenic | 45.0% | |
| AGCGAGTGATCTTTCACCAT+TGG | + | chr4_4:363968-363987 | Msa0662620:intron | 45.0% | |
| CTTTGTGAATGCTCTGCCAA+TGG | - | chr4_4:363987-364006 | None:intergenic | 45.0% | |
| ! | GCAGAGCATTCACAAAGCTT+TGG | + | chr4_4:363990-364009 | Msa0662620:intron | 45.0% |
| ACCTTGCCAAGGATCCTATA+TGG | + | chr4_4:364241-364260 | Msa0662620:intron | 45.0% | |
| TCCATATAGGATCCTTGGCA+AGG | - | chr4_4:364245-364264 | None:intergenic | 45.0% | |
| GAAGGACTCAGCAAACTACT+TGG | + | chr4_4:364358-364377 | Msa0662620:CDS | 45.0% | |
| ! | AATTGCCGTCACTTTGCTCA+TGG | + | chr4_4:364456-364475 | Msa0662620:intron | 45.0% |
| TGGGCACACTCTAATTGTCT+AGG | - | chr4_4:364680-364699 | None:intergenic | 45.0% | |
| CTGGAATCAGTTGGGACATT+AGG | - | chr4_4:364706-364725 | None:intergenic | 45.0% | |
| ATGGGATGAGAAGAGAGGAA+GGG | - | chr4_4:364733-364752 | None:intergenic | 45.0% | |
| TATGGATGGGATGAGAAGAG+AGG | - | chr4_4:364738-364757 | None:intergenic | 45.0% | |
| AGCTGAATGGTGCAGATTCA+AGG | - | chr4_4:364983-365002 | None:intergenic | 45.0% | |
| GAAGGCTGTCTTAAGCTGAA+TGG | - | chr4_4:364996-365015 | None:intergenic | 45.0% | |
| TTTGTGATGAACGCAGGTTC+AGG | + | chr4_4:365166-365185 | Msa0662620:intron | 45.0% | |
| CTGAAGAAACGGAAAGACCT+AGG | + | chr4_4:365203-365222 | Msa0662620:CDS | 45.0% | |
| CTTGCTCTGTAAAGCTTCCT+AGG | - | chr4_4:365223-365242 | None:intergenic | 45.0% | |
| CTAGGAAGCTTTACAGAGCA+AGG | + | chr4_4:365221-365240 | Msa0662620:CDS | 45.0% | |
| GAACATCAAAGTGTGTGGAC+TGG | - | chr4_4:365516-365535 | None:intergenic | 45.0% | |
| GATGTTCTGTCACCTTAGTG+TGG | + | chr4_4:365529-365548 | Msa0662620:intron | 45.0% | |
| AAGAAAGAAAGCGACTGCGT+CGG | + | chr4_4:365615-365634 | Msa0662620:CDS | 45.0% | |
| AGAAATGGGAGGAGAGAGAA+AGG | - | chr4_4:365722-365741 | None:intergenic | 45.0% | |
| AAAACCTCCAAACCCCATCA+AGG | - | chr4_4:365944-365963 | None:intergenic | 45.0% | |
| ! | TGATGGGGTTTGGAGGTTTT+CGG | + | chr4_4:365944-365963 | Msa0662620:CDS | 45.0% |
| CTGCAATGTTGAGCAGAATC+TGG | + | chr4_4:366034-366053 | Msa0662620:three_prime_UTR | 45.0% | |
| ! | GGTAGCTAACAGTTTGGTTC+CGG | + | chr4_4:366055-366074 | Msa0662620:three_prime_UTR | 45.0% |
| ! | GTAGCTAACAGTTTGGTTCC+GGG | + | chr4_4:366056-366075 | Msa0662620:three_prime_UTR | 45.0% |
| ! | ATAGTTTGCAAGCTGGTCCA+TGG | + | chr4_4:366129-366148 | Msa0662620:three_prime_UTR | 45.0% |
| GTCACTCCCCACATAGATAA+TGG | - | chr4_4:366250-366269 | None:intergenic | 45.0% | |
| AGTCGGCTAAATGCTTTGCA+AGG | + | chr4_4:366321-366340 | Msa0662620:three_prime_UTR | 45.0% | |
| GTCGGCTAAATGCTTTGCAA+GGG | + | chr4_4:366322-366341 | Msa0662620:three_prime_UTR | 45.0% | |
| ATTCGGTTGAATTAGGCCGC+TGG | + | chr4_4:362457-362476 | Msa0662620:intron | 50.0% | |
| TTCGGTTGAATTAGGCCGCT+GGG | + | chr4_4:362458-362477 | Msa0662620:intron | 50.0% | |
| GAATGTGTTGTCAACCCCAG+CGG | - | chr4_4:362476-362495 | None:intergenic | 50.0% | |
| TTCAATGGCTTCCTCTGCAC+CGG | - | chr4_4:362717-362736 | None:intergenic | 50.0% | |
| AGTAGACCTTGAATCCCGCT+TGG | + | chr4_4:362752-362771 | Msa0662620:intron | 50.0% | |
| GTAGACCTTGAATCCCGCTT+GGG | + | chr4_4:362753-362772 | Msa0662620:intron | 50.0% | |
| ATCCCGCTTGGGAAAAACTC+AGG | + | chr4_4:362764-362783 | Msa0662620:intron | 50.0% | |
| CAGGGCCTAAGTGAATGTCA+AGG | + | chr4_4:362874-362893 | Msa0662620:intron | 50.0% | |
| CCAAGCCATATCCCACTAAG+TGG | - | chr4_4:362925-362944 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATATGGCT+TGG | + | chr4_4:362922-362941 | Msa0662620:intron | 50.0% | |
| !! | TGTTGGCTTAGTGGTGCAAC+CGG | - | chr4_4:363126-363145 | None:intergenic | 50.0% |
| CCGACAAGTCCACAGGAATT+TGG | - | chr4_4:363858-363877 | None:intergenic | 50.0% | |
| AATTCCTGTGGACTTGTCGG+TGG | + | chr4_4:363858-363877 | Msa0662620:intron | 50.0% | |
| ATTCCTGTGGACTTGTCGGT+GGG | + | chr4_4:363859-363878 | Msa0662620:intron | 50.0% | |
| AGTTTGTGAGTGCGTGGTGA+AGG | + | chr4_4:364340-364359 | Msa0662620:CDS | 50.0% | |
| ! | TTCCACAGATCAGAGAGCGT+TGG | + | chr4_4:364493-364512 | Msa0662620:intron | 50.0% |
| !! | TCCACAGATCAGAGAGCGTT+GGG | + | chr4_4:364494-364513 | Msa0662620:intron | 50.0% |
| CAGTTGGGACATTAGGGACT+GGG | - | chr4_4:364699-364718 | None:intergenic | 50.0% | |
| TCAGTTGGGACATTAGGGAC+TGG | - | chr4_4:364700-364719 | None:intergenic | 50.0% | |
| AGGGTAGGCTGGAATCAGTT+GGG | - | chr4_4:364714-364733 | None:intergenic | 50.0% | |
| AAGGGTAGGCTGGAATCAGT+TGG | - | chr4_4:364715-364734 | None:intergenic | 50.0% | |
| GATGAGAAGAGAGGAAGGGT+AGG | - | chr4_4:364729-364748 | None:intergenic | 50.0% | |
| GATGGGATGAGAAGAGAGGA+AGG | - | chr4_4:364734-364753 | None:intergenic | 50.0% | |
| ! | GAGGGAGAGAGCATATGGAT+GGG | - | chr4_4:364751-364770 | None:intergenic | 50.0% |
| ! | AGAGGGAGAGAGCATATGGA+TGG | - | chr4_4:364752-364771 | None:intergenic | 50.0% |
| ! | AGAGAGAGGGAGAGAGCATA+TGG | - | chr4_4:364756-364775 | None:intergenic | 50.0% |
| TAGAGTAGAGAGGACGTGTG+TGG | - | chr4_4:364796-364815 | None:intergenic | 50.0% | |
| TCCTCTCTACTCTAGCCTCT+AGG | + | chr4_4:364802-364821 | Msa0662620:intron | 50.0% | |
| TCCTAGAGGCTAGAGTAGAG+AGG | - | chr4_4:364806-364825 | None:intergenic | 50.0% | |
| TAAGATGAGGCCCAAGAGGA+GGG | - | chr4_4:364899-364918 | None:intergenic | 50.0% | |
| ATAAGATGAGGCCCAAGAGG+AGG | - | chr4_4:364900-364919 | None:intergenic | 50.0% | |
| CCTATAAGATGAGGCCCAAG+AGG | - | chr4_4:364903-364922 | None:intergenic | 50.0% | |
| CCTCTTGGGCCTCATCTTAT+AGG | + | chr4_4:364900-364919 | Msa0662620:intron | 50.0% | |
| TTCTTCTCTAGCCCTCCTCT+TGG | + | chr4_4:364924-364943 | Msa0662620:intron | 50.0% | |
| TCTTCTCTAGCCCTCCTCTT+GGG | + | chr4_4:364925-364944 | Msa0662620:intron | 50.0% | |
| GATGAACGCAGGTTCAGGAA+CGG | + | chr4_4:365171-365190 | Msa0662620:intron | 50.0% | |
| AGAAAGAAAGCGACTGCGTC+GGG | + | chr4_4:365616-365635 | Msa0662620:CDS | 50.0% | |
| GAGAGCTAGACAGAAATGGG+AGG | - | chr4_4:365733-365752 | None:intergenic | 50.0% | |
| GCAACGTCAGGATCCATTTC+AGG | - | chr4_4:365919-365938 | None:intergenic | 50.0% | |
| AGGTTCATCCTAAAGCCACC+CGG | - | chr4_4:366077-366096 | None:intergenic | 50.0% | |
| TGGGGAGTGACAAATTGCCA+TGG | + | chr4_4:366259-366278 | Msa0662620:three_prime_UTR | 50.0% | |
| TCGGTTGAATTAGGCCGCTG+GGG | + | chr4_4:362459-362478 | Msa0662620:intron | 55.0% | |
| GGTTGCACCACTAAGCCAAC+AGG | + | chr4_4:363125-363144 | Msa0662620:CDS | 55.0% | |
| !! | TGGGGAGGTGTTGGGACTTA+TGG | + | chr4_4:363275-363294 | Msa0662620:intron | 55.0% |
| !! | GGGGAGGTGTTGGGACTTAT+GGG | + | chr4_4:363276-363295 | Msa0662620:intron | 55.0% |
| GTACCCACTGACAAGTCCAC+AGG | - | chr4_4:363396-363415 | None:intergenic | 55.0% | |
| CTGCTCAGTTTGTGAGTGCG+TGG | + | chr4_4:364334-364353 | Msa0662620:CDS | 55.0% | |
| AGAAGAGAGGAAGGGTAGGC+TGG | - | chr4_4:364725-364744 | None:intergenic | 55.0% | |
| TGCACTGTGGGAGAGAGAGA+GGG | - | chr4_4:364769-364788 | None:intergenic | 55.0% | |
| GGGTGTGACTCGTTTCCTAG+AGG | - | chr4_4:364820-364839 | None:intergenic | 55.0% | |
| AAGATGAGGCCCAAGAGGAG+GGG | - | chr4_4:364898-364917 | None:intergenic | 55.0% | |
| TGAGATGAGGCCCAAGAGGA+GGG | - | chr4_4:364938-364957 | None:intergenic | 55.0% | |
| ATGAGATGAGGCCCAAGAGG+AGG | - | chr4_4:364939-364958 | None:intergenic | 55.0% | |
| CCTATGAGATGAGGCCCAAG+AGG | - | chr4_4:364942-364961 | None:intergenic | 55.0% | |
| CCTCTTGGGCCTCATCTCAT+AGG | + | chr4_4:364939-364958 | Msa0662620:intron | 55.0% | |
| TCCTGACGTTGCTGCCTTGA+TGG | + | chr4_4:365927-365946 | Msa0662620:CDS | 55.0% | |
| CCTGACGTTGCTGCCTTGAT+GGG | + | chr4_4:365928-365947 | Msa0662620:CDS | 55.0% | |
| CTGACGTTGCTGCCTTGATG+GGG | + | chr4_4:365929-365948 | Msa0662620:CDS | 55.0% | |
| GTTGCTGCCTTGATGGGGTT+TGG | + | chr4_4:365934-365953 | Msa0662620:CDS | 55.0% | |
| ! | GCTAACAGTTTGGTTCCGGG+TGG | + | chr4_4:366059-366078 | Msa0662620:three_prime_UTR | 55.0% |
| ! | GTTTGGTTCCGGGTGGCTTT+AGG | + | chr4_4:366066-366085 | Msa0662620:three_prime_UTR | 55.0% |
| TGCTCGTGAGCGTGAGAGAC+AGG | + | chr4_4:362531-362550 | Msa0662620:CDS | 60.0% | |
| AATGGCTTCCTCTGCACCGG+AGG | - | chr4_4:362714-362733 | None:intergenic | 60.0% | |
| GTACCCACCGACAAGTCCAC+AGG | - | chr4_4:363865-363884 | None:intergenic | 60.0% | |
| GCCCAACGCTCTCTGATCTG+TGG | - | chr4_4:364498-364517 | None:intergenic | 60.0% | |
| GTGCACTGTGGGAGAGAGAG+AGG | - | chr4_4:364770-364789 | None:intergenic | 60.0% | |
| GTGTGTGGCAGGTGCACTGT+GGG | - | chr4_4:364781-364800 | None:intergenic | 60.0% | |
| GTAGAGAGGACGTGTGTGGC+AGG | - | chr4_4:364792-364811 | None:intergenic | 60.0% | |
| CCCATCAAGGCAGCAACGTC+AGG | - | chr4_4:365931-365950 | None:intergenic | 60.0% | |
| GCTGCCTTGATGGGGTTTGG+AGG | + | chr4_4:365937-365956 | Msa0662620:CDS | 60.0% | |
| GTAGAGGTCCTCCGGTGCAG+AGG | + | chr4_4:362703-362722 | Msa0662620:CDS | 65.0% | |
| CGTGTGTGGCAGGTGCACTG+TGG | - | chr4_4:364782-364801 | None:intergenic | 65.0% | |
| ATCTGGCGCACCCCTCCTCT+TGG | + | chr4_4:364885-364904 | Msa0662620:intron | 65.0% | |
| TCTGGCGCACCCCTCCTCTT+GGG | + | chr4_4:364886-364905 | Msa0662620:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 362205 | 366364 | 362205 | ID=Msa0662620;Name=Msa0662620 |
| chr4_4 | mRNA | 362205 | 366364 | 362205 | ID=Msa0662620-mRNA-1;Parent=Msa0662620;Name=Msa0662620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=122|0.88|0.9|1|0.88|0.8|10|380|191 |
| chr4_4 | exon | 362205 | 362265 | 362205 | ID=Msa0662620-mRNA-1:exon:122;Parent=Msa0662620-mRNA-1 |
| chr4_4 | exon | 362302 | 362386 | 362302 | ID=Msa0662620-mRNA-1:exon:123;Parent=Msa0662620-mRNA-1 |
| chr4_4 | exon | 362472 | 362577 | 362472 | ID=Msa0662620-mRNA-1:exon:124;Parent=Msa0662620-mRNA-1 |
| chr4_4 | exon | 362703 | 362752 | 362703 | ID=Msa0662620-mRNA-1:exon:125;Parent=Msa0662620-mRNA-1 |
| chr4_4 | exon | 363114 | 363146 | 363114 | ID=Msa0662620-mRNA-1:exon:126;Parent=Msa0662620-mRNA-1 |
| chr4_4 | exon | 364323 | 364401 | 364323 | ID=Msa0662620-mRNA-1:exon:127;Parent=Msa0662620-mRNA-1 |
| chr4_4 | exon | 364501 | 364553 | 364501 | ID=Msa0662620-mRNA-1:exon:128;Parent=Msa0662620-mRNA-1 |
| chr4_4 | exon | 365182 | 365242 | 365182 | ID=Msa0662620-mRNA-1:exon:129;Parent=Msa0662620-mRNA-1 |
| chr4_4 | exon | 365576 | 365655 | 365576 | ID=Msa0662620-mRNA-1:exon:130;Parent=Msa0662620-mRNA-1 |
| chr4_4 | exon | 365895 | 366364 | 365895 | ID=Msa0662620-mRNA-1:exon:131;Parent=Msa0662620-mRNA-1 |
| chr4_4 | five_prime_UTR | 362205 | 362265 | 362205 | ID=Msa0662620-mRNA-1:five_prime_utr;Parent=Msa0662620-mRNA-1 |
| chr4_4 | five_prime_UTR | 362302 | 362362 | 362302 | ID=Msa0662620-mRNA-1:five_prime_utr;Parent=Msa0662620-mRNA-1 |
| chr4_4 | CDS | 362363 | 362386 | 362363 | ID=Msa0662620-mRNA-1:cds;Parent=Msa0662620-mRNA-1 |
| chr4_4 | CDS | 362472 | 362577 | 362472 | ID=Msa0662620-mRNA-1:cds;Parent=Msa0662620-mRNA-1 |
| chr4_4 | CDS | 362703 | 362752 | 362703 | ID=Msa0662620-mRNA-1:cds;Parent=Msa0662620-mRNA-1 |
| chr4_4 | CDS | 363114 | 363146 | 363114 | ID=Msa0662620-mRNA-1:cds;Parent=Msa0662620-mRNA-1 |
| chr4_4 | CDS | 364323 | 364401 | 364323 | ID=Msa0662620-mRNA-1:cds;Parent=Msa0662620-mRNA-1 |
| chr4_4 | CDS | 364501 | 364553 | 364501 | ID=Msa0662620-mRNA-1:cds;Parent=Msa0662620-mRNA-1 |
| chr4_4 | CDS | 365182 | 365242 | 365182 | ID=Msa0662620-mRNA-1:cds;Parent=Msa0662620-mRNA-1 |
| chr4_4 | CDS | 365576 | 365655 | 365576 | ID=Msa0662620-mRNA-1:cds;Parent=Msa0662620-mRNA-1 |
| chr4_4 | CDS | 365895 | 365984 | 365895 | ID=Msa0662620-mRNA-1:cds;Parent=Msa0662620-mRNA-1 |
| chr4_4 | three_prime_UTR | 365985 | 366364 | 365985 | ID=Msa0662620-mRNA-1:three_prime_utr;Parent=Msa0662620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
