AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0662790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662790 MtrunA17_Chr8g0346001 76.923 260 2 2 1 202 1 260 1.19e-139 401
Msa0662790 MtrunA17_Chr2g0309331 63.314 169 27 2 10 154 5 162 1.38e-71 224
Msa0662790 MtrunA17_Chr4g0017921 54.630 216 51 5 5 197 1 192 1.42e-71 224
Msa0662790 MtrunA17_Chr4g0056541 49.593 246 62 6 9 203 1 235 1.05e-67 215
Msa0662790 MtrunA17_Chr4g0018391 42.553 282 97 7 9 239 1 268 8.93e-66 209
Msa0662790 MtrunA17_Chr5g0405211 59.394 165 33 2 12 153 5 158 5.03e-64 205
Msa0662790 MtrunA17_Chr5g0398971 57.396 169 38 2 9 153 1 159 6.13e-63 202
Msa0662790 MtrunA17_Chr8g0372121 57.059 170 39 3 12 158 3 161 5.68e-61 196
Msa0662790 MtrunA17_Chr1g0200561 57.558 172 35 3 6 152 10 168 1.89e-59 193
Msa0662790 MtrunA17_Chr6g0481091 41.379 174 69 3 15 165 6 169 4.59e-43 147
Msa0662790 MtrunA17_Chr3g0091921 45.714 175 60 5 3 152 2 166 7.83e-42 146
Msa0662790 MtrunA17_Chr4g0060931 42.268 194 66 6 3 170 2 175 1.03e-41 147
Msa0662790 MtrunA17_Chr2g0316971 44.311 167 58 4 13 154 21 177 4.89e-41 146
Msa0662790 MtrunA17_Chr3g0109821 44.172 163 55 4 15 152 6 157 9.28e-41 150
Msa0662790 MtrunA17_Chr3g0139331 40.000 205 68 5 5 184 1 175 2.73e-40 143
Msa0662790 MtrunA17_Chr2g0309891 42.604 169 61 5 15 158 6 163 6.39e-40 142
Msa0662790 MtrunA17_Chr5g0417791 40.351 171 71 3 14 161 2 164 1.06e-39 139
Msa0662790 MtrunA17_Chr5g0433781 44.172 163 54 4 15 152 6 156 1.20e-39 146
Msa0662790 MtrunA17_Chr1g0147421 41.304 184 68 4 12 169 24 193 4.94e-39 140
Msa0662790 MtrunA17_Chr6g0484441 38.571 210 82 5 12 198 2 187 9.22e-39 139
Msa0662790 MtrunA17_Chr4g0054791 37.864 206 86 5 13 188 4 197 9.24e-39 139
Msa0662790 MtrunA17_Chr2g0318101 40.000 170 72 3 12 154 12 178 1.31e-38 139
Msa0662790 MtrunA17_Chr6g0453451 41.765 170 66 4 14 160 19 178 1.96e-38 138
Msa0662790 MtrunA17_Chr7g0252971 37.438 203 86 4 12 181 5 199 1.96e-38 138
Msa0662790 MtrunA17_Chr4g0042561 39.884 173 73 3 10 159 4 168 2.11e-38 136
Msa0662790 MtrunA17_Chr3g0124761 39.444 180 78 3 14 171 6 176 3.29e-38 136
Msa0662790 MtrunA17_Chr8g0347361 58.120 117 27 1 193 287 1 117 6.84e-38 133
Msa0662790 MtrunA17_Chr7g0217721 43.678 174 62 4 18 160 22 190 1.14e-37 136
Msa0662790 MtrunA17_Chr1g0172341 59.649 114 24 1 203 294 3 116 1.22e-37 129
Msa0662790 MtrunA17_Chr3g0130731 38.857 175 76 4 9 161 1 166 1.23e-37 135
Msa0662790 MtrunA17_Chr5g0400461 38.947 190 67 5 11 168 2 174 1.81e-37 135
Msa0662790 MtrunA17_Chr7g0223511 58.120 117 27 1 193 287 14 130 2.95e-37 132
Msa0662790 MtrunA17_Chr2g0312321 41.176 170 64 5 12 158 8 164 9.55e-37 133
Msa0662790 MtrunA17_Chr2g0318081 41.212 165 62 3 11 152 12 164 1.11e-36 134
Msa0662790 MtrunA17_Chr7g0253011 40.113 177 69 4 15 164 17 183 1.32e-36 134
Msa0662790 MtrunA17_Chr6g0461661 40.606 165 63 4 15 154 18 172 7.93e-36 132
Msa0662790 MtrunA17_Chr7g0263931 39.024 164 67 3 14 152 10 165 8.13e-36 131
Msa0662790 MtrunA17_Chr4g0047841 36.702 188 77 4 6 154 6 190 1.01e-35 131
Msa0662790 MtrunA17_Chr8g0359921 41.566 166 64 4 12 154 11 166 1.74e-35 130
Msa0662790 MtrunA17_Chr8g0384721 37.427 171 77 3 9 157 1 163 2.68e-35 129
Msa0662790 MtrunA17_Chr2g0326361 39.645 169 69 3 16 159 15 175 2.98e-35 129
Msa0662790 MtrunA17_Chr7g0214071 40.116 172 61 4 7 153 7 161 3.17e-35 127
Msa0662790 MtrunA17_Chr5g0420451 61.321 106 19 1 206 289 5 110 1.09e-34 125
Msa0662790 MtrunA17_Chr7g0217711 45.833 144 52 2 10 130 14 154 1.74e-34 123
Msa0662790 MtrunA17_Chr6g0453131 35.135 185 89 4 1 159 1 180 2.51e-34 128
Msa0662790 MtrunA17_Chr1g0183741 38.788 165 60 3 13 152 8 156 6.10e-34 125
Msa0662790 MtrunA17_Chr8g0361731 38.554 166 68 4 17 154 16 175 9.71e-34 127
Msa0662790 MtrunA17_Chr1g0197351 40.341 176 74 4 13 165 40 207 1.95e-33 127
Msa0662790 MtrunA17_Chr7g0261411 38.650 163 59 3 13 150 8 154 4.34e-33 123
Msa0662790 MtrunA17_Chr2g0304851 58.716 109 23 1 203 289 5 113 6.41e-33 124
Msa0662790 MtrunA17_Chr3g0144271 44.681 141 49 3 15 129 23 160 1.02e-32 125
Msa0662790 MtrunA17_Chr1g0197361 34.025 241 106 8 17 232 10 222 2.31e-32 125
Msa0662790 MtrunA17_Chr5g0393531 56.881 109 25 1 203 289 1 109 2.59e-32 119
Msa0662790 MtrunA17_Chr1g0167871 60.748 107 20 1 205 289 208 314 2.73e-32 126
Msa0662790 MtrunA17_Chr3g0092671 38.919 185 68 6 17 177 7 170 5.11e-32 124
Msa0662790 MtrunA17_Chr2g0311651 37.356 174 77 4 9 152 15 186 6.48e-32 120
Msa0662790 MtrunA17_Chr3g0130101 35.326 184 76 4 17 177 9 172 6.81e-32 121
Msa0662790 MtrunA17_Chr8g0364791 36.364 187 70 5 17 177 8 171 9.08e-32 122
Msa0662790 MtrunA17_Chr5g0442771 36.585 164 75 2 15 152 18 178 1.21e-31 119
Msa0662790 MtrunA17_Chr5g0417001 37.500 168 70 4 15 154 14 174 1.46e-31 121
Msa0662790 MtrunA17_Chr3g0131911 36.257 171 74 3 10 153 9 171 1.61e-31 117
Msa0662790 MtrunA17_Chr6g0481111 59.091 110 22 2 203 289 1 110 4.70e-31 113
Msa0662790 MtrunA17_Chr7g0231491 57.944 107 23 1 205 289 37 143 4.77e-31 117
Msa0662790 MtrunA17_Chr3g0128111 35.955 178 76 5 18 170 45 209 1.36e-30 115
Msa0662790 MtrunA17_Chr5g0428991 38.372 172 73 3 7 155 17 178 1.74e-30 120
Msa0662790 MtrunA17_Chr1g0201021 34.239 184 78 4 17 177 21 184 2.17e-30 120
Msa0662790 MtrunA17_Chr8g0384201 35.829 187 71 5 17 177 8 171 3.61e-30 119
Msa0662790 MtrunA17_Chr4g0038751 37.143 175 67 3 17 165 17 174 6.02e-30 115
Msa0662790 MtrunA17_Chr5g0393801 56.311 103 23 1 203 283 1 103 9.92e-30 108
Msa0662790 MtrunA17_Chr2g0311661 36.905 168 74 4 15 152 20 185 9.46e-29 111
Msa0662790 MtrunA17_Chr3g0128151 36.842 171 75 3 7 154 14 174 1.06e-28 115
Msa0662790 MtrunA17_Chr8g0385991 33.708 178 80 4 3 153 2 168 1.40e-27 107
Msa0662790 MtrunA17_Chr4g0076731 35.185 162 67 3 15 152 54 201 1.46e-27 110
Msa0662790 MtrunA17_Chr8g0372151 64.368 87 4 1 203 289 6 65 1.29e-26 103
Msa0662790 MtrunA17_Chr4g0026141 29.565 230 117 8 16 211 6 224 3.17e-22 93.6
Msa0662790 MtrunA17_Chr3g0113001 41.667 120 38 3 64 160 14 124 1.55e-21 92.4
Msa0662790 MtrunA17_Chr5g0426561 73.585 53 14 0 203 255 1 53 2.97e-21 85.1
Msa0662790 MtrunA17_Chr2g0321631 32.402 179 74 8 16 160 5 170 3.45e-20 87.4
Msa0662790 MtrunA17_Chr8g0345671 37.984 129 54 3 15 118 11 138 9.28e-20 88.6
Msa0662790 MtrunA17_Chr8g0345711 33.333 165 78 6 15 150 12 173 1.04e-19 84.3
Msa0662790 MtrunA17_Chr4g0050701 31.288 163 73 4 15 152 11 159 3.01e-19 83.6
Msa0662790 MtrunA17_Chr6g0453011 62.903 62 17 1 187 248 23 78 1.92e-18 79.7
Msa0662790 MtrunA17_Chr2g0321741 34.677 124 51 3 29 124 1 122 3.92e-18 83.6
Msa0662790 MtrunA17_Chr4g0026601 52.381 84 23 1 223 289 34 117 4.81e-18 80.1
Msa0662790 MtrunA17_Chr6g0464321 83.721 43 7 0 203 245 1 43 9.15e-18 77.4
Msa0662790 MtrunA17_Chr7g0266701 30.481 187 95 5 15 172 4 184 1.02e-17 80.9
Msa0662790 MtrunA17_Chr3g0113031 41.818 110 35 3 81 167 3 106 3.18e-17 79.7
Msa0662790 MtrunA17_Chr8g0345691 36.641 131 55 4 14 118 11 139 2.31e-16 79.0
Msa0662790 MtrunA17_Chr8g0345731 32.215 149 71 5 15 135 24 170 1.78e-15 72.8
Msa0662790 MtrunA17_Chr8g0384351 26.415 159 76 6 14 156 9 142 8.77e-12 62.8
Msa0662790 MtrunA17_Chr7g0243371 35.802 81 27 1 71 126 17 97 1.30e-11 60.8
Msa0662790 MtrunA17_Chr8g0345721 28.061 196 79 7 1 137 16 208 1.54e-11 62.8
Msa0662790 MtrunA17_Chr8g0345701 29.861 144 63 5 12 118 4 146 3.82e-11 60.8
Msa0662790 MtrunA17_Chr8g0345741 33.613 119 51 4 26 118 2 118 6.86e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0662790 AT2G46770.1 62.963 243 47 5 1 200 2 244 2.24e-93 281
Msa0662790 AT1G32770.1 50.877 285 82 7 1 229 1 283 3.25e-81 249
Msa0662790 AT3G61910.1 57.895 228 63 4 5 199 1 228 1.69e-80 247
Msa0662790 AT1G79580.3 64.205 176 27 3 6 157 8 171 1.14e-73 231
Msa0662790 AT1G79580.5 64.205 176 27 3 6 157 8 171 1.14e-73 231
Msa0662790 AT1G79580.4 64.205 176 27 3 6 157 8 171 1.14e-73 231
Msa0662790 AT1G79580.2 64.205 176 27 3 6 157 8 171 1.14e-73 231
Msa0662790 AT1G79580.1 64.205 176 27 3 6 157 8 171 1.14e-73 231
Msa0662790 AT4G10350.1 53.774 212 60 4 5 193 1 197 4.22e-70 221
Msa0662790 AT1G33280.1 55.102 196 49 4 5 177 1 180 2.04e-67 213
Msa0662790 AT4G36160.2 60.355 169 33 3 8 153 7 164 8.67e-64 206
Msa0662790 AT4G36160.1 60.355 169 33 3 8 153 3 160 9.77e-64 205
Msa0662790 AT4G36160.3 60.355 169 33 3 8 153 3 160 9.77e-64 205
Msa0662790 AT1G12260.2 59.412 170 31 3 9 153 1 157 2.71e-63 203
Msa0662790 AT2G18060.3 61.111 162 29 3 15 153 9 159 5.18e-63 203
Msa0662790 AT2G18060.1 61.111 162 29 3 15 153 9 159 5.18e-63 203
Msa0662790 AT1G12260.1 59.412 170 31 3 9 153 1 157 6.87e-63 204
Msa0662790 AT1G62700.1 60.119 168 33 3 9 153 1 157 1.03e-62 203
Msa0662790 AT1G62700.2 60.119 168 33 3 9 153 1 157 1.03e-62 203
Msa0662790 AT5G66300.1 40.945 254 85 4 5 203 2 245 1.59e-60 194
Msa0662790 AT1G71930.2 56.707 164 37 2 12 152 6 158 1.09e-58 191
Msa0662790 AT1G71930.1 56.707 164 37 2 12 152 6 158 1.09e-58 191
Msa0662790 AT5G62380.2 46.262 214 77 3 13 203 5 203 1.48e-57 189
Msa0662790 AT5G62380.1 46.262 214 77 3 13 203 5 203 1.48e-57 189
Msa0662790 AT3G04070.2 41.848 184 72 4 7 162 2 178 3.23e-43 151
Msa0662790 AT3G17730.1 43.023 172 61 4 15 161 6 165 4.08e-43 148
Msa0662790 AT1G69490.1 41.436 181 75 3 7 164 1 173 1.32e-42 147
Msa0662790 AT3G18400.1 45.294 170 55 4 12 157 2 157 3.51e-42 148
Msa0662790 AT3G04070.1 40.909 198 70 5 7 162 2 194 6.37e-42 148
Msa0662790 AT1G54330.1 46.626 163 47 5 15 152 6 153 8.15e-42 146
Msa0662790 AT2G24430.2 43.275 171 59 3 12 157 13 170 1.62e-41 146
Msa0662790 AT2G24430.1 43.275 171 59 3 12 157 13 170 1.62e-41 146
Msa0662790 AT5G17260.1 43.478 161 59 3 15 152 6 157 2.24e-41 149
Msa0662790 AT5G07680.1 46.341 164 55 4 12 152 14 167 8.11e-41 144
Msa0662790 AT3G03200.1 44.099 161 58 3 15 152 6 157 8.70e-41 148
Msa0662790 AT5G07680.2 46.584 161 53 4 15 152 3 153 1.09e-40 144
Msa0662790 AT3G15170.1 44.643 168 58 4 12 154 17 174 2.58e-40 143
Msa0662790 AT1G65910.1 42.945 163 56 4 15 152 6 156 1.37e-39 146
Msa0662790 AT5G39610.1 44.444 162 57 4 15 153 20 171 3.37e-39 139
Msa0662790 AT5G61430.1 44.512 164 58 4 12 152 13 166 6.14e-39 140
Msa0662790 AT1G76420.1 41.718 163 57 3 15 152 22 171 2.43e-38 138
Msa0662790 AT4G10350.2 47.134 157 47 3 60 193 7 150 3.85e-38 137
Msa0662790 AT5G46590.1 43.103 174 61 5 11 158 2 163 4.84e-38 136
Msa0662790 AT5G53950.1 42.857 175 64 5 10 158 11 175 9.04e-38 137
Msa0662790 AT5G18270.2 42.073 164 61 4 15 154 21 174 1.29e-37 136
Msa0662790 AT5G63790.2 38.333 180 80 4 9 165 54 225 1.80e-37 135
Msa0662790 AT5G63790.1 38.333 180 80 4 9 165 44 215 1.82e-37 135
Msa0662790 AT5G18270.1 41.463 164 62 4 15 154 21 174 2.87e-37 135
Msa0662790 AT1G61110.1 38.596 171 75 3 11 154 12 179 5.71e-37 134
Msa0662790 AT3G12977.1 39.535 172 70 3 12 160 15 175 1.19e-36 132
Msa0662790 AT5G46590.2 46.053 152 52 4 11 135 2 150 1.88e-36 132
Msa0662790 AT3G29035.1 50.000 130 39 2 15 121 24 150 2.21e-36 132
Msa0662790 AT3G04060.1 42.593 162 59 4 15 152 20 171 3.09e-36 133
Msa0662790 AT4G27410.2 42.073 164 60 4 12 152 11 162 3.77e-36 131
Msa0662790 AT5G08790.1 40.361 166 68 4 15 157 7 164 9.47e-36 130
Msa0662790 AT3G10490.1 40.341 176 67 5 13 164 25 186 1.83e-35 128
Msa0662790 AT1G01720.1 38.012 171 76 3 14 162 6 168 2.44e-35 129
Msa0662790 AT1G77450.1 39.157 166 70 3 14 157 9 165 3.81e-35 127
Msa0662790 AT5G04410.1 37.234 188 75 4 13 177 7 174 8.41e-35 132
Msa0662790 AT1G56010.2 40.606 165 65 4 12 152 16 171 1.38e-34 128
Msa0662790 AT5G13180.1 36.932 176 70 3 3 153 2 161 1.42e-34 126
Msa0662790 AT3G10500.1 36.702 188 76 4 13 177 7 174 2.05e-34 131
Msa0662790 AT3G10480.2 41.758 182 68 6 6 164 19 185 2.32e-34 130
Msa0662790 AT3G15510.1 38.462 169 74 3 19 160 21 186 3.18e-34 128
Msa0662790 AT2G33480.1 36.932 176 73 3 1 153 1 161 4.19e-34 125
Msa0662790 AT3G10480.1 41.758 182 69 7 6 164 19 186 4.38e-34 129
Msa0662790 AT1G52880.1 40.491 163 66 3 19 154 21 179 4.80e-34 126
Msa0662790 AT1G32510.1 38.857 175 64 5 13 155 4 167 5.32e-34 125
Msa0662790 AT2G43000.1 40.252 159 61 3 17 152 20 167 6.97e-34 125
Msa0662790 AT3G10490.2 40.341 176 67 5 13 164 25 186 8.08e-34 128
Msa0662790 AT4G17980.1 40.116 172 60 5 11 152 2 160 1.03e-33 124
Msa0662790 AT4G17980.2 40.116 172 60 5 11 152 2 160 2.57e-33 124
Msa0662790 AT3G15500.1 38.788 165 66 4 12 153 11 163 5.41e-33 124
Msa0662790 AT5G64060.1 35.079 191 81 4 11 178 2 172 5.44e-33 124
Msa0662790 AT5G24590.2 37.222 180 79 3 7 162 5 174 7.32e-33 126
Msa0662790 AT2G33480.2 36.932 176 71 4 1 153 1 159 7.76e-33 122
Msa0662790 AT5G39820.1 35.450 189 66 4 15 158 20 197 8.26e-33 124
Msa0662790 AT1G52890.1 38.554 166 67 4 12 154 11 164 1.00e-32 123
Msa0662790 AT4G27410.3 38.764 178 63 4 12 152 11 179 1.14e-32 122
Msa0662790 AT5G09330.5 35.079 191 81 4 11 178 2 172 2.55e-32 125
Msa0662790 AT5G09330.2 35.079 191 81 4 11 178 2 172 2.55e-32 125
Msa0662790 AT5G09330.4 35.079 191 81 4 11 178 2 172 2.55e-32 125
Msa0662790 AT5G09330.3 35.079 191 81 4 11 178 2 172 2.55e-32 125
Msa0662790 AT5G09330.1 35.079 191 81 4 11 178 2 172 2.55e-32 125
Msa0662790 AT3G49530.2 37.356 174 75 4 4 153 2 165 4.59e-32 123
Msa0662790 AT1G26870.1 37.423 163 74 2 17 154 18 177 4.71e-32 123
Msa0662790 AT3G49530.1 37.356 174 75 4 4 153 2 165 6.62e-32 123
Msa0662790 AT1G33060.2 39.130 161 65 3 15 152 24 174 4.46e-31 122
Msa0662790 AT1G33060.1 39.130 161 65 3 15 152 24 174 4.86e-31 122
Msa0662790 AT3G10480.3 36.279 215 67 8 6 164 19 219 6.47e-30 119
Msa0662790 AT2G27300.1 35.882 170 65 4 5 151 7 155 8.31e-30 115
Msa0662790 AT4G35580.1 38.037 163 68 3 15 154 9 161 1.20e-29 117
Msa0662790 AT4G35580.3 38.037 163 68 3 15 154 9 161 1.61e-29 117
Msa0662790 AT4G35580.2 38.037 163 68 3 15 154 9 161 1.64e-29 117
Msa0662790 AT2G02450.1 35.185 162 67 3 15 152 51 198 1.77e-28 113
Msa0662790 AT2G02450.2 35.185 162 67 3 15 152 51 198 2.15e-28 113
Msa0662790 AT4G28530.1 35.165 182 59 5 13 152 8 172 8.58e-28 110
Msa0662790 AT2G17040.1 33.529 170 70 3 17 160 8 160 9.95e-28 108
Msa0662790 AT1G34180.3 32.432 185 82 3 17 178 18 182 4.54e-27 110
Msa0662790 AT5G04395.1 36.709 158 64 3 2 123 15 172 4.64e-27 104
Msa0662790 AT1G34180.1 32.432 185 82 3 17 178 18 182 5.43e-27 110
Msa0662790 AT1G34190.1 30.811 185 85 4 17 178 18 182 5.44e-27 110
Msa0662790 AT5G22290.1 33.735 166 70 3 13 155 19 167 1.25e-26 107
Msa0662790 AT1G34180.4 31.122 196 82 4 17 178 18 194 6.51e-26 107
Msa0662790 AT1G34180.2 31.122 196 82 4 17 178 18 194 7.44e-26 107
Msa0662790 AT3G44290.2 36.000 125 55 2 17 118 16 138 1.28e-23 96.7
Msa0662790 AT3G12910.1 37.647 170 65 7 17 152 23 185 1.84e-23 98.2
Msa0662790 AT3G44290.1 36.000 125 55 2 17 118 16 138 3.88e-23 97.8
Msa0662790 AT4G28530.2 35.669 157 55 5 13 152 8 135 1.49e-22 95.9
Msa0662790 AT1G32870.3 32.323 198 86 7 5 177 37 211 1.40e-21 95.1
Msa0662790 AT1G32870.1 32.323 198 86 7 5 177 1 175 1.61e-21 94.7
Msa0662790 AT1G32870.2 32.323 198 86 7 5 177 1 175 1.76e-21 94.7
Msa0662790 AT5G61430.2 41.905 105 31 3 71 152 6 103 1.85e-19 86.7
Msa0662790 AT1G56010.1 41.748 103 31 2 73 152 8 104 3.01e-19 85.5
Msa0662790 AT3G12977.2 36.290 124 45 3 60 160 10 122 1.20e-18 83.2
Msa0662790 AT1G02250.1 29.279 222 109 8 16 211 4 203 2.66e-17 81.6
Msa0662790 AT1G02230.1 32.432 185 83 7 16 173 4 173 2.68e-17 81.6
Msa0662790 AT2G33480.3 33.962 106 38 2 71 153 8 104 2.71e-15 73.6
Msa0662790 AT3G44350.2 27.700 213 106 9 18 201 8 201 8.32e-15 72.8
Msa0662790 AT5G64530.1 29.268 164 79 6 15 152 3 155 2.07e-14 70.9
Msa0662790 AT5G64530.2 34.109 129 53 5 15 122 3 120 6.19e-14 68.6
Msa0662790 AT3G44350.1 31.429 140 64 5 18 128 8 144 1.41e-13 67.8
Msa0662790 AT3G04420.2 33.333 129 58 4 16 118 4 130 9.15e-13 67.8
Msa0662790 AT3G04420.1 33.333 129 58 4 16 118 4 130 1.54e-12 67.4
Msa0662790 AT2G18060.2 45.679 81 10 3 96 153 2 71 5.76e-11 62.4
Msa0662790 AT1G02220.1 31.013 158 73 6 14 142 2 152 5.79e-11 63.2
Msa0662790 AT4G01520.1 27.273 132 69 2 16 120 5 136 6.00e-11 62.4
Msa0662790 AT4G01540.2 28.244 131 65 3 18 120 7 136 7.70e-11 62.8
Msa0662790 AT4G01540.1 28.244 131 65 3 18 120 7 136 8.60e-11 62.8
Msa0662790 AT4G01540.3 28.244 131 65 3 18 120 7 136 9.30e-11 62.4

Find 83 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTTATTGTTGACAAAA+AGG 0.235979 4_4:+605469 Msa0662790:CDS
GAGAGACCATTTGAATTTAT+TGG 0.239278 4_4:+605356 Msa0662790:CDS
TTACCGATAAGAAAGATTTC+TGG 0.250387 4_4:+605384 Msa0662790:CDS
ATCATAAGTTTAAGTTGATA+TGG 0.253808 4_4:+605608 Msa0662790:CDS
CTCAAGTTCCTCCTGGATTC+CGG 0.279380 4_4:+602992 Msa0662790:CDS
GTATCTAATACTTACCAAAT+TGG 0.280632 4_4:-603596 None:intergenic
GCGCTACAGCCGCAGGGTTC+TGG 0.282580 4_4:+603419 Msa0662790:CDS
TTTCCAGAAATCTTTCTTAT+CGG 0.299723 4_4:-605387 None:intergenic
AACATGAGCATATCTGTTAA+TGG 0.305797 4_4:+602964 Msa0662790:CDS
CACCACCAATGACACCAATT+TGG 0.318447 4_4:+603582 Msa0662790:CDS
TTTGTAGAGAAATGCAAAAT+AGG 0.328623 4_4:+603322 Msa0662790:intron
GCTCATGTTATCAGGCATTA+AGG 0.331964 4_4:-602950 None:intergenic
AGCGCGATTGGTTCGTGTTC+CGG 0.335099 4_4:-603401 None:intergenic
ACAGATATGCTCATGTTATC+AGG 0.354451 4_4:-602958 None:intergenic
CCTCTCCAGAAGGGCTGTCT+AGG 0.360170 4_4:-603818 None:intergenic
TGGAAAGGAGCATTTGGAAT+TGG 0.367607 4_4:+605451 Msa0662790:CDS
TAAAGATGGAAAGGAGCATT+TGG 0.375666 4_4:+605445 Msa0662790:CDS
ACTTACCAAATTGGTGTCAT+TGG 0.377318 4_4:-603587 None:intergenic
TTGGATACTTCTTGTCTTTG+TGG 0.389435 4_4:-603378 None:intergenic
AAAACCCTAGACAGCCCTTC+TGG 0.397489 4_4:+603813 Msa0662790:CDS
CTTCTTCAGTTGGATGAAAC+CGG 0.420245 4_4:-603011 None:intergenic
TAATGAGGTGGTGTGTGTAC+TGG 0.438957 4_4:-602793 None:intergenic
GAACAATGATCTGATGTTCA+AGG 0.440231 4_4:+605579 Msa0662790:CDS
AAGTTTAAGTTGATATGGAT+TGG 0.445464 4_4:+605613 Msa0662790:CDS
CCCTGCGGCTGTAGCGCGAT+TGG 0.449718 4_4:-603413 None:intergenic
TGAGAGAACACATTCAAAAC+AGG 0.456774 4_4:-602846 None:intergenic
CTTCTTCTTCCCTCTCCAGA+AGG 0.463749 4_4:-603828 None:intergenic
TGAAGAAGCTCTTCTTCAGT+TGG 0.465783 4_4:-603021 None:intergenic
GAACAACTCCACAAAATGAT+TGG 0.470282 4_4:+603344 Msa0662790:CDS
TCAAAACAGGTAGGAAAGAA+AGG 0.471456 4_4:-602833 None:intergenic
ACCAATCGCGCTACAGCCGC+AGG 0.471757 4_4:+603412 Msa0662790:CDS
AAATGGACTGTTGTTAAAGA+TGG 0.472339 4_4:+605431 Msa0662790:CDS
CTAGTAATGATCTCAACAAA+AGG 0.472367 4_4:-605689 None:intergenic
CTGTGAAAGTGAAAGACAAA+TGG 0.474599 4_4:+605414 Msa0662790:CDS
TTCTTCTTCCCTCTCCAGAA+GGG 0.478150 4_4:-603827 None:intergenic
ATGTTAATCAGCATAAATGT+TGG 0.478349 4_4:+605653 Msa0662790:CDS
ATGGTGGTCAAGAAGAAGGA+TGG 0.479948 4_4:+603754 Msa0662790:CDS
GGACAATCTCAAGTTCCTCC+TGG 0.485001 4_4:+602985 Msa0662790:CDS
CTCTCCAGAAGGGCTGTCTA+GGG 0.487859 4_4:-603817 None:intergenic
GTTGGATGAAACCGGAATCC+AGG 0.489389 4_4:-603003 None:intergenic
CTTGAACCATGGGACATTCA+AGG 0.497760 4_4:+603117 Msa0662790:CDS
ATGTCACCAATAAATTCAAA+TGG 0.498833 4_4:-605362 None:intergenic
AAGAAGGATGGGTGGTGTGT+AGG 0.502710 4_4:+603766 Msa0662790:CDS
TACAAAGGTCGTGCTCCTCA+TGG 0.519789 4_4:+603514 Msa0662790:intron
TTAAGTTGATATGGATTGGA+GGG 0.526171 4_4:+605617 Msa0662790:CDS
CGATTGGTTCGTGTTCCGGT+TGG 0.532825 4_4:-603397 None:intergenic
GGTGATGGTGGTCAAGAAGA+AGG 0.538922 4_4:+603750 Msa0662790:CDS
CACAAGTATCATACAAGTGA+TGG 0.540165 4_4:-603851 None:intergenic
GACTGTTGTTAAAGATGGAA+AGG 0.544139 4_4:+605436 Msa0662790:CDS
TTTAAGTTGATATGGATTGG+AGG 0.546855 4_4:+605616 Msa0662790:CDS
CTAGACAGCCCTTCTGGAGA+GGG 0.547964 4_4:+603819 Msa0662790:CDS
AGCTTCTTCAATACTACTTG+AGG 0.548206 4_4:+603034 Msa0662790:CDS
AAAGACAAGAAGTATCCAAC+CGG 0.551006 4_4:+603382 Msa0662790:CDS
ATAATTATGGAAGGTTTGCA+AGG 0.557854 4_4:+603952 Msa0662790:intron
GCAGGGTTCTGGAAAGCCAC+AGG 0.562165 4_4:+603430 Msa0662790:CDS
TTGTTGAGAGTAGATTCAAA+AGG 0.565100 4_4:-603975 None:intergenic
TTAAGGTGACTAAGAGAGAG+TGG 0.567112 4_4:-602933 None:intergenic
ATCTCAACAAGCTTGAACCA+TGG 0.570034 4_4:+603106 Msa0662790:CDS
TACCAAATTGGTGTCATTGG+TGG 0.571229 4_4:-603584 None:intergenic
GTAGCAAAAGAAGATAAGCT+AGG 0.574439 4_4:-602911 None:intergenic
TAGGAAAGAAAGGAAAGGAA+AGG 0.575917 4_4:-602823 None:intergenic
AGGAAAGGTGAAAGATAATG+AGG 0.576981 4_4:-602808 None:intergenic
TGGTGGTCAAGAAGAAGGAT+GGG 0.580328 4_4:+603755 Msa0662790:CDS
ATATTACCTTGAATGTCCCA+TGG 0.582876 4_4:-603123 None:intergenic
TCTCAACAAGCTTGAACCAT+GGG 0.584241 4_4:+603107 Msa0662790:CDS
ATGGTGGTTATAATAATGAA+AGG 0.589878 4_4:+604000 Msa0662790:CDS
CCTAGACAGCCCTTCTGGAG+AGG 0.596746 4_4:+603818 Msa0662790:CDS
GAATCTACTCTCAACAACAA+TGG 0.604976 4_4:+603981 Msa0662790:CDS
CAACATCACGAATAACATCA+AGG 0.607029 4_4:-603083 None:intergenic
ACAGGTAGGAAAGAAAGGAA+AGG 0.621168 4_4:-602828 None:intergenic
GTGTCGAATATGATTGGTGA+TGG 0.624396 4_4:+603735 Msa0662790:CDS
TAAGCTAGGTAGCTATGTAG+TGG 0.632683 4_4:-602897 None:intergenic
TCGAATATGATTGGTGATGG+TGG 0.634462 4_4:+603738 Msa0662790:CDS
AGAACACATTCAAAACAGGT+AGG 0.646739 4_4:-602842 None:intergenic
CCAATCGCGCTACAGCCGCA+GGG 0.651911 4_4:+603413 Msa0662790:CDS
TCTACTCTCAACAACAATGG+TGG 0.656048 4_4:+603984 Msa0662790:CDS
GTACTGGAATGAGTATGTAA+AGG 0.658470 4_4:-602777 None:intergenic
TGGTCAAGAAGAAGGATGGG+TGG 0.660445 4_4:+603758 Msa0662790:CDS
AAAGGTGAAAGATAATGAGG+TGG 0.692128 4_4:-602805 None:intergenic
TAGTGGTTCTAGATTCACAA+GGG 0.694470 4_4:-602880 None:intergenic
GTAGTGGTTCTAGATTCACA+AGG 0.706064 4_4:-602881 None:intergenic
GGATGAAACCGGAATCCAGG+AGG 0.718093 4_4:-603000 None:intergenic
TGTGGCTTTCCAGAACCCTG+CGG 0.759505 4_4:-603428 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACTTATATAGTAAATAAAT+TGG + chr4_4:603678-603697 Msa0662790:intron 10.0%
!!! ATTAGATATTTTTTACAAAA+GGG - chr4_4:604380-604399 None:intergenic 10.0%
!!! TAAAAGTTCATATTTTTTTA+TGG + chr4_4:604672-604691 Msa0662790:intron 10.0%
!! ATGAATGAAGAAATAAATAA+AGG - chr4_4:603172-603191 None:intergenic 15.0%
!! GCAAATTACAATAATAATTA+TGG + chr4_4:603939-603958 Msa0662790:intron 15.0%
!! ATTACAATAATAATTATGGA+AGG + chr4_4:603943-603962 Msa0662790:intron 15.0%
!!! CATTAGATATTTTTTACAAA+AGG - chr4_4:604381-604400 None:intergenic 15.0%
!! ACATACATTTAAAAGAATAA+AGG - chr4_4:604569-604588 None:intergenic 15.0%
!! ATAAAACACAAATATGAAAA+CGG - chr4_4:604594-604613 None:intergenic 15.0%
!!! ATTAGGTATTACTTTTAAAT+GGG + chr4_4:604775-604794 Msa0662790:intron 15.0%
!! ACTTCATTATAACTTTAAAT+GGG - chr4_4:604849-604868 None:intergenic 15.0%
!! AACTTCATTATAACTTTAAA+TGG - chr4_4:604850-604869 None:intergenic 15.0%
!!! TTTTATTTTACACAATCTTT+AGG + chr4_4:604954-604973 Msa0662790:intron 15.0%
!! ATTAATATGATTAAGTGAAA+TGG - chr4_4:605233-605252 None:intergenic 15.0%
!! ATTTCACTTAATCATATTAA+TGG + chr4_4:605232-605251 Msa0662790:intron 15.0%
!! TTAGTACAAAGATTAAAAAA+TGG - chr4_4:605259-605278 None:intergenic 15.0%
!! AAATCAAAGGAATAAAGAAA+AGG - chr4_4:603220-603239 None:intergenic 20.0%
!! TTATATATAGCAATGGAAAA+AGG + chr4_4:603464-603483 Msa0662790:intron 20.0%
!! ATTTAAAAGAATAAAGGAGA+AGG - chr4_4:604563-604582 None:intergenic 20.0%
!!! CATTAGGTATTACTTTTAAA+TGG + chr4_4:604774-604793 Msa0662790:intron 20.0%
!! TAACCAATAAACAAAACAAA+TGG - chr4_4:604808-604827 None:intergenic 20.0%
!! TCAAAATCATGATTTACATT+AGG + chr4_4:604874-604893 Msa0662790:intron 20.0%
!!! ATTAGGATTTTCTTTGAAAT+GGG + chr4_4:604891-604910 Msa0662790:intron 20.0%
!! AAAGAACCATAAACAAAATA+AGG - chr4_4:605117-605136 None:intergenic 20.0%
!! AAATTACAATGAAAAAGACA+TGG - chr4_4:605187-605206 None:intergenic 20.0%
!!! ATCATAAGTTTAAGTTGATA+TGG + chr4_4:605608-605627 Msa0662790:CDS 20.0%
! CACTTGAAGAAATAAATCAA+AGG - chr4_4:603233-603252 None:intergenic 25.0%
!! CTTTGATTTATTTCTTCAAG+TGG + chr4_4:603231-603250 Msa0662790:intron 25.0%
! GGAAGACAATAAATATATAC+TGG + chr4_4:603252-603271 Msa0662790:intron 25.0%
!!! GTATCGTGTTTTTTATTTTG+TGG + chr4_4:603281-603300 Msa0662790:intron 25.0%
! TTTGTAGAGAAATGCAAAAT+AGG + chr4_4:603322-603341 Msa0662790:intron 25.0%
! GACAAAGTTATATATAGCAA+TGG + chr4_4:603457-603476 Msa0662790:intron 25.0%
! GTATCTAATACTTACCAAAT+TGG - chr4_4:603599-603618 None:intergenic 25.0%
! ATTAGATACAAATATACGTC+TGG + chr4_4:603610-603629 Msa0662790:intron 25.0%
!! CTTTATTGCGACAAAATTTT+AGG + chr4_4:603713-603732 Msa0662790:intron 25.0%
! ATGGTGGTTATAATAATGAA+AGG + chr4_4:604000-604019 Msa0662790:CDS 25.0%
! TATCTACTTGAATAATTGCA+TGG - chr4_4:604100-604119 None:intergenic 25.0%
! GAGAAAACAAAGAAACTAAT+TGG - chr4_4:604285-604304 None:intergenic 25.0%
! CACATTTAACATAGAACTTT+AGG - chr4_4:604636-604655 None:intergenic 25.0%
!! AGTAACCAAAAACACAATTT+TGG - chr4_4:604728-604747 None:intergenic 25.0%
!! CCTAATGTAAATCATGATTT+TGG - chr4_4:604761-604780 None:intergenic 25.0%
! CCAAAATCATGATTTACATT+AGG + chr4_4:604758-604777 Msa0662790:intron 25.0%
! CAATAAACAAAACAAATGGA+GGG - chr4_4:604804-604823 None:intergenic 25.0%
!!! CATTAGGATTTTCTTTGAAA+TGG + chr4_4:604890-604909 Msa0662790:intron 25.0%
! ATGTCACCAATAAATTCAAA+TGG - chr4_4:605365-605384 None:intergenic 25.0%
! TTTCCAGAAATCTTTCTTAT+CGG - chr4_4:605390-605409 None:intergenic 25.0%
! ATTGGTTATTGTTGACAAAA+AGG + chr4_4:605469-605488 Msa0662790:CDS 25.0%
! TTATTGTTGACAAAAAGGTA+AGG + chr4_4:605474-605493 Msa0662790:intron 25.0%
! TATTGTTGACAAAAAGGTAA+GGG + chr4_4:605475-605494 Msa0662790:intron 25.0%
!!! AAGTTTAAGTTGATATGGAT+TGG + chr4_4:605613-605632 Msa0662790:CDS 25.0%
! ATGTTAATCAGCATAAATGT+TGG + chr4_4:605653-605672 Msa0662790:CDS 25.0%
! AATGTGTTCTCTCAACTTTT+TGG + chr4_4:602855-602874 Msa0662790:five_prime_UTR 30.0%
! ATGTGTTCTCTCAACTTTTT+GGG + chr4_4:602856-602875 Msa0662790:five_prime_UTR 30.0%
AACATGAGCATATCTGTTAA+TGG + chr4_4:602964-602983 Msa0662790:CDS 30.0%
!!! AAGAAGTACCAATCATTTTG+TGG - chr4_4:603355-603374 None:intergenic 30.0%
TATAGCAATGGAAAAAGGAT+TGG + chr4_4:603469-603488 Msa0662790:intron 30.0%
!!! AAGACTCTTGTTTTCTACAA+AGG + chr4_4:603499-603518 Msa0662790:intron 30.0%
!!! TTTTAGGTGTCGAATATGAT+TGG + chr4_4:603729-603748 Msa0662790:intron 30.0%
TTGTATGATACTTGTGATGA+AGG + chr4_4:603858-603877 Msa0662790:intron 30.0%
GAGCAAATACTTCAACAAAT+GGG + chr4_4:603888-603907 Msa0662790:intron 30.0%
AAATACTTCAACAAATGGGA+AGG + chr4_4:603892-603911 Msa0662790:intron 30.0%
AATACTTCAACAAATGGGAA+GGG + chr4_4:603893-603912 Msa0662790:intron 30.0%
ATAATTATGGAAGGTTTGCA+AGG + chr4_4:603952-603971 Msa0662790:intron 30.0%
TTGTTGAGAGTAGATTCAAA+AGG - chr4_4:603978-603997 None:intergenic 30.0%
AACAATGAGAACAACAATGA+TGG + chr4_4:604071-604090 Msa0662790:intron 30.0%
ACAATGAGAACAACAATGAT+GGG + chr4_4:604072-604091 Msa0662790:intron 30.0%
TATAAGAAAAGACTATGCTG+TGG + chr4_4:604130-604149 Msa0662790:intron 30.0%
TAATGATGTCATGTAAGTAC+TGG + chr4_4:604256-604275 Msa0662790:intron 30.0%
ATTGGGATGACAATGAAATT+GGG - chr4_4:604311-604330 None:intergenic 30.0%
TGTAGTAGTGTAGTTAGATT+GGG - chr4_4:604328-604347 None:intergenic 30.0%
! GTGAACCAAAATTGTGTTTT+TGG + chr4_4:604720-604739 Msa0662790:intron 30.0%
CCAATAAACAAAACAAATGG+AGG - chr4_4:604805-604824 None:intergenic 30.0%
!!! CCTCCATTTGTTTTGTTTAT+TGG + chr4_4:604802-604821 Msa0662790:intron 30.0%
!!! ACTTTTTTAACTTGTCTTGC+TGG + chr4_4:605065-605084 Msa0662790:intron 30.0%
!!! ACAGGTCCTTATTTTGTTTA+TGG + chr4_4:605108-605127 Msa0662790:intron 30.0%
!! GTTTTATTCAGCTGCAAAAA+TGG + chr4_4:605334-605353 Msa0662790:intron 30.0%
GAGAGACCATTTGAATTTAT+TGG + chr4_4:605356-605375 Msa0662790:CDS 30.0%
TTACCGATAAGAAAGATTTC+TGG + chr4_4:605384-605403 Msa0662790:CDS 30.0%
!! AAATGGACTGTTGTTAAAGA+TGG + chr4_4:605431-605450 Msa0662790:CDS 30.0%
ATTGTTGACAAAAAGGTAAG+GGG + chr4_4:605476-605495 Msa0662790:intron 30.0%
!! TTTAAGTTGATATGGATTGG+AGG + chr4_4:605616-605635 Msa0662790:CDS 30.0%
!! TTAAGTTGATATGGATTGGA+GGG + chr4_4:605617-605636 Msa0662790:CDS 30.0%
AAAGGTGAAAGATAATGAGG+TGG - chr4_4:602808-602827 None:intergenic 35.0%
AGGAAAGGTGAAAGATAATG+AGG - chr4_4:602811-602830 None:intergenic 35.0%
TAGGAAAGAAAGGAAAGGAA+AGG - chr4_4:602826-602845 None:intergenic 35.0%
TCAAAACAGGTAGGAAAGAA+AGG - chr4_4:602836-602855 None:intergenic 35.0%
AGAACACATTCAAAACAGGT+AGG - chr4_4:602845-602864 None:intergenic 35.0%
TGAGAGAACACATTCAAAAC+AGG - chr4_4:602849-602868 None:intergenic 35.0%
!! TAGTGGTTCTAGATTCACAA+GGG - chr4_4:602883-602902 None:intergenic 35.0%
GTAGCAAAAGAAGATAAGCT+AGG - chr4_4:602914-602933 None:intergenic 35.0%
ACAGATATGCTCATGTTATC+AGG - chr4_4:602961-602980 None:intergenic 35.0%
AGCTTCTTCAATACTACTTG+AGG + chr4_4:603034-603053 Msa0662790:CDS 35.0%
CAACATCACGAATAACATCA+AGG - chr4_4:603086-603105 None:intergenic 35.0%
ATATTACCTTGAATGTCCCA+TGG - chr4_4:603126-603145 None:intergenic 35.0%
TGCATTTCTCTACAAAGAAG+AGG - chr4_4:603318-603337 None:intergenic 35.0%
GAACAACTCCACAAAATGAT+TGG + chr4_4:603344-603363 Msa0662790:CDS 35.0%
TTGGATACTTCTTGTCTTTG+TGG - chr4_4:603381-603400 None:intergenic 35.0%
!! AAAGACAAGAAGTATCCAAC+CGG + chr4_4:603382-603401 Msa0662790:CDS 35.0%
! GCATGATCCAATCAGATTTT+TGG - chr4_4:603540-603559 None:intergenic 35.0%
!! ACTTACCAAATTGGTGTCAT+TGG - chr4_4:603590-603609 None:intergenic 35.0%
CACAAGTATCATACAAGTGA+TGG - chr4_4:603854-603873 None:intergenic 35.0%
GGAGCAAATACTTCAACAAA+TGG + chr4_4:603887-603906 Msa0662790:intron 35.0%
ATACTTCAACAAATGGGAAG+GGG + chr4_4:603894-603913 Msa0662790:intron 35.0%
GAATCTACTCTCAACAACAA+TGG + chr4_4:603981-604000 Msa0662790:CDS 35.0%
! GATTTTGGACTCTCTAAGTT+TGG - chr4_4:604038-604057 None:intergenic 35.0%
!!! TTCTCCATGCTTGTTGATTT+TGG - chr4_4:604053-604072 None:intergenic 35.0%
TTGTAAGCAAGGGTAAAACT+TGG - chr4_4:604160-604179 None:intergenic 35.0%
GATTGGGATGACAATGAAAT+TGG - chr4_4:604312-604331 None:intergenic 35.0%
GTGTAGTAGTGTAGTTAGAT+TGG - chr4_4:604329-604348 None:intergenic 35.0%
AACTACACTACTACACTGTT+CGG + chr4_4:604333-604352 Msa0662790:intron 35.0%
! GTCTGAAGTATAGATTGGAA+AGG - chr4_4:604412-604431 None:intergenic 35.0%
! GAGAAGTCTGAAGTATAGAT+TGG - chr4_4:604417-604436 None:intergenic 35.0%
TAGCAACAACTGCATTTATG+TGG + chr4_4:604527-604546 Msa0662790:intron 35.0%
AACAACTGCATTTATGTGGT+AGG + chr4_4:604531-604550 Msa0662790:intron 35.0%
AAGTTCGTAACACACAAGAA+GGG - chr4_4:604920-604939 None:intergenic 35.0%
TAAGTTCGTAACACACAAGA+AGG - chr4_4:604921-604940 None:intergenic 35.0%
!!! TGGTTTGATGGACTTTTATC+AGG + chr4_4:605085-605104 Msa0662790:intron 35.0%
TGATTAAGTGAAATGGTGAG+TGG - chr4_4:605226-605245 None:intergenic 35.0%
GAGTGATTAAGCACAAAAAC+TGG - chr4_4:605282-605301 None:intergenic 35.0%
CTGTGAAAGTGAAAGACAAA+TGG + chr4_4:605414-605433 Msa0662790:CDS 35.0%
GACTGTTGTTAAAGATGGAA+AGG + chr4_4:605436-605455 Msa0662790:CDS 35.0%
!! TAAAGATGGAAAGGAGCATT+TGG + chr4_4:605445-605464 Msa0662790:CDS 35.0%
CTCTTCTAGTACTTTGTCAT+AGG - chr4_4:605524-605543 None:intergenic 35.0%
GAACAATGATCTGATGTTCA+AGG + chr4_4:605579-605598 Msa0662790:CDS 35.0%
ACAGGTAGGAAAGAAAGGAA+AGG - chr4_4:602831-602850 None:intergenic 40.0%
!! GTAGTGGTTCTAGATTCACA+AGG - chr4_4:602884-602903 None:intergenic 40.0%
TAAGCTAGGTAGCTATGTAG+TGG - chr4_4:602900-602919 None:intergenic 40.0%
TTAAGGTGACTAAGAGAGAG+TGG - chr4_4:602936-602955 None:intergenic 40.0%
GCTCATGTTATCAGGCATTA+AGG - chr4_4:602953-602972 None:intergenic 40.0%
CTTCTTCAGTTGGATGAAAC+CGG - chr4_4:603014-603033 None:intergenic 40.0%
TGAAGAAGCTCTTCTTCAGT+TGG - chr4_4:603024-603043 None:intergenic 40.0%
ATCTCAACAAGCTTGAACCA+TGG + chr4_4:603106-603125 Msa0662790:CDS 40.0%
TCTCAACAAGCTTGAACCAT+GGG + chr4_4:603107-603126 Msa0662790:CDS 40.0%
TATAACTTTGTCACGACCTG+TGG - chr4_4:603449-603468 None:intergenic 40.0%
!!! CAATCAGATTTTTGGCCATG+AGG - chr4_4:603532-603551 None:intergenic 40.0%
CTCATGGCCAAAAATCTGAT+TGG + chr4_4:603530-603549 Msa0662790:CDS 40.0%
!! TACCAAATTGGTGTCATTGG+TGG - chr4_4:603587-603606 None:intergenic 40.0%
GTGTCGAATATGATTGGTGA+TGG + chr4_4:603735-603754 Msa0662790:CDS 40.0%
!! TCGAATATGATTGGTGATGG+TGG + chr4_4:603738-603757 Msa0662790:CDS 40.0%
TACTTGTGATGAAGGAGCTT+TGG + chr4_4:603866-603885 Msa0662790:intron 40.0%
TCTACTCTCAACAACAATGG+TGG + chr4_4:603984-604003 Msa0662790:CDS 40.0%
GAGTCCAAAATCAACAAGCA+TGG + chr4_4:604046-604065 Msa0662790:intron 40.0%
GTCTCCTACTTAAGGGTAAA+AGG + chr4_4:604189-604208 Msa0662790:intron 40.0%
! GACTCCTTTTACCCTTAAGT+AGG - chr4_4:604196-604215 None:intergenic 40.0%
!! AACTTGTCTTGCTGGTTTGA+TGG + chr4_4:605073-605092 Msa0662790:intron 40.0%
!!! TGATGGACTTTTATCAGGAC+AGG + chr4_4:605090-605109 Msa0662790:intron 40.0%
!! TGGAAAGGAGCATTTGGAAT+TGG + chr4_4:605451-605470 Msa0662790:CDS 40.0%
TAATGAGGTGGTGTGTGTAC+TGG - chr4_4:602796-602815 None:intergenic 45.0%
CTTGAACCATGGGACATTCA+AGG + chr4_4:603117-603136 Msa0662790:CDS 45.0%
CACCACCAATGACACCAATT+TGG + chr4_4:603582-603601 Msa0662790:CDS 45.0%
ATGGTGGTCAAGAAGAAGGA+TGG + chr4_4:603754-603773 Msa0662790:CDS 45.0%
TGGTGGTCAAGAAGAAGGAT+GGG + chr4_4:603755-603774 Msa0662790:CDS 45.0%
TTCTTCTTCCCTCTCCAGAA+GGG - chr4_4:603830-603849 None:intergenic 45.0%
!! CGTGGCTGATTTGTAAGCAA+GGG - chr4_4:604170-604189 None:intergenic 45.0%
!! ACGTGGCTGATTTGTAAGCA+AGG - chr4_4:604171-604190 None:intergenic 45.0%
TTACCCTTAAGTAGGAGACG+TGG - chr4_4:604188-604207 None:intergenic 45.0%
GGACAATCTCAAGTTCCTCC+TGG + chr4_4:602985-603004 Msa0662790:CDS 50.0%
CTCAAGTTCCTCCTGGATTC+CGG + chr4_4:602992-603011 Msa0662790:CDS 50.0%
GTTGGATGAAACCGGAATCC+AGG - chr4_4:603006-603025 None:intergenic 50.0%
TACAAAGGTCGTGCTCCTCA+TGG + chr4_4:603514-603533 Msa0662790:intron 50.0%
!! GGTGATGGTGGTCAAGAAGA+AGG + chr4_4:603750-603769 Msa0662790:CDS 50.0%
TGGTCAAGAAGAAGGATGGG+TGG + chr4_4:603758-603777 Msa0662790:CDS 50.0%
AAGAAGGATGGGTGGTGTGT+AGG + chr4_4:603766-603785 Msa0662790:CDS 50.0%
AAAACCCTAGACAGCCCTTC+TGG + chr4_4:603813-603832 Msa0662790:CDS 50.0%
CTTCTTCTTCCCTCTCCAGA+AGG - chr4_4:603831-603850 None:intergenic 50.0%
ACAAATGGGAAGGGGTTGCA+AGG + chr4_4:603902-603921 Msa0662790:intron 50.0%
TCAGCCACGTCTCCTACTTA+AGG + chr4_4:604181-604200 Msa0662790:intron 50.0%
CAGCCACGTCTCCTACTTAA+GGG + chr4_4:604182-604201 Msa0662790:intron 50.0%
GGATGAAACCGGAATCCAGG+AGG - chr4_4:603003-603022 None:intergenic 55.0%
!! CGATTGGTTCGTGTTCCGGT+TGG - chr4_4:603400-603419 None:intergenic 55.0%
!! AGCGCGATTGGTTCGTGTTC+CGG - chr4_4:603404-603423 None:intergenic 55.0%
TGTGGCTTTCCAGAACCCTG+CGG - chr4_4:603431-603450 None:intergenic 55.0%
CTCTCCAGAAGGGCTGTCTA+GGG - chr4_4:603820-603839 None:intergenic 55.0%
! CTAGACAGCCCTTCTGGAGA+GGG + chr4_4:603819-603838 Msa0662790:CDS 55.0%
!! GCAGGGTTCTGGAAAGCCAC+AGG + chr4_4:603430-603449 Msa0662790:CDS 60.0%
CCTCTCCAGAAGGGCTGTCT+AGG - chr4_4:603821-603840 None:intergenic 60.0%
! CCTAGACAGCCCTTCTGGAG+AGG + chr4_4:603818-603837 Msa0662790:CDS 60.0%
ACCAATCGCGCTACAGCCGC+AGG + chr4_4:603412-603431 Msa0662790:CDS 65.0%
CCAATCGCGCTACAGCCGCA+GGG + chr4_4:603413-603432 Msa0662790:CDS 65.0%
CCCTGCGGCTGTAGCGCGAT+TGG - chr4_4:603416-603435 None:intergenic 70.0%
GCGCTACAGCCGCAGGGTTC+TGG + chr4_4:603419-603438 Msa0662790:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 602779 605699 602779 ID=Msa0662790;Name=Msa0662790
chr4_4 mRNA 602779 605699 602779 ID=Msa0662790-mRNA-1;Parent=Msa0662790;Name=Msa0662790-mRNA-1;_AED=0.41;_eAED=0.42;_QI=176|0.33|0.14|1|0.5|0.28|7|0|299
chr4_4 exon 602779 603138 602779 ID=Msa0662790-mRNA-1:exon:301;Parent=Msa0662790-mRNA-1
chr4_4 exon 603329 603451 603329 ID=Msa0662790-mRNA-1:exon:302;Parent=Msa0662790-mRNA-1
chr4_4 exon 603521 603603 603521 ID=Msa0662790-mRNA-1:exon:303;Parent=Msa0662790-mRNA-1
chr4_4 exon 603735 603859 603735 ID=Msa0662790-mRNA-1:exon:304;Parent=Msa0662790-mRNA-1
chr4_4 exon 603965 604047 603965 ID=Msa0662790-mRNA-1:exon:305;Parent=Msa0662790-mRNA-1
chr4_4 exon 605345 605490 605345 ID=Msa0662790-mRNA-1:exon:306;Parent=Msa0662790-mRNA-1
chr4_4 exon 605544 605699 605544 ID=Msa0662790-mRNA-1:exon:307;Parent=Msa0662790-mRNA-1
chr4_4 five_prime_UTR 602779 602954 602779 ID=Msa0662790-mRNA-1:five_prime_utr;Parent=Msa0662790-mRNA-1
chr4_4 CDS 602955 603138 602955 ID=Msa0662790-mRNA-1:cds;Parent=Msa0662790-mRNA-1
chr4_4 CDS 603329 603451 603329 ID=Msa0662790-mRNA-1:cds;Parent=Msa0662790-mRNA-1
chr4_4 CDS 603521 603603 603521 ID=Msa0662790-mRNA-1:cds;Parent=Msa0662790-mRNA-1
chr4_4 CDS 603735 603859 603735 ID=Msa0662790-mRNA-1:cds;Parent=Msa0662790-mRNA-1
chr4_4 CDS 603965 604047 603965 ID=Msa0662790-mRNA-1:cds;Parent=Msa0662790-mRNA-1
chr4_4 CDS 605345 605490 605345 ID=Msa0662790-mRNA-1:cds;Parent=Msa0662790-mRNA-1
chr4_4 CDS 605544 605699 605544 ID=Msa0662790-mRNA-1:cds;Parent=Msa0662790-mRNA-1
Gene Sequence

>Msa0662790

ATGCCTGATAACATGAGCATATCTGTTAATGGACAATCTCAAGTTCCTCCTGGATTCCGGTTTCATCCAACTGAAGAAGAGCTTCTTCAATACTACTTGAGGAAAAAAGTCTCTTATGAGAAGATTGACCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATTCAAGAGAAATGCAAAATAGGAACAACTCCACAAAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCAACCGGAACACGAACCAATCGCGCTACAGCCGCAGGGTTCTGGAAAGCCACAGGTCGTGCTCCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGACTCGACGATAACACCACCAATGACACCAATTTGGTGTCGAATATGATTGGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTCAAAACCCTAGACAGCCCTTCTGGAGAGGGAAGAAGAAGCCATCACTTGTTTGCAAGGCCTTTTGAATCTACTCTCAACAACAATGGTGGTTATAATAATGAAAGGTTCATGAAACTTCCAAACTTAGAGACTGCAAAAATGGAGAGACCATTTGAATTTATTGGTGACATTACCGATAAGAAAGATTTCTGGAAACTAGCTGTGAAAGTGAAAGACAAATGGACTGTTGTTAAAGATGGAAAGGAGCATTTGGAATTGGTTATTGTTGACAAAAAGAACAATACTTACACTCTGAGTAACTTTCAAGTCTTGAACAATGATCTGATGTTCAAGGCATCTGATCATAAGTTTAAGTTGATATGGATTGGAGGGACTACTGCTATTGATGTTAATCAGCATAAATGTTGGATTGAAATTCAAGCCTTTTGTTGA
Protein sequence

>Msa0662790

MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRAPHGQKSDWIMHEYRLDDNTTNDTNLVSNMIGDGGQEEGWVVCRIFKKKNHLKTLDSPSGEGRRSHHLFARPFESTLNNNGGYNNERFMKLPNLETAKMERPFEFIGDITDKKDFWKLAVKVKDKWTVVKDGKEHLELVIVDKKNNTYTLSNFQVLNNDLMFKASDHKFKLIWIGGTTAIDVNQHKCWIEIQAFC*