Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662960 | XP_004511028.2 | 86.250 | 160 | 14 | 1 | 1 | 152 | 45 | 204 | 6.20e-94 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662960 | sp|O80366|ARR9_ARATH | 68.387 | 155 | 39 | 1 | 1 | 145 | 1 | 155 | 8.34e-73 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662960 | A0A1S2YWH2 | 86.250 | 160 | 14 | 1 | 1 | 152 | 45 | 204 | 2.96e-94 | 281 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0662960 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662960 | MtrunA17_Chr8g0352871 | 83.750 | 160 | 18 | 1 | 1 | 152 | 1 | 160 | 3.79e-94 | 270 |
| Msa0662960 | MtrunA17_Chr3g0082861 | 75.484 | 155 | 29 | 1 | 7 | 152 | 2 | 156 | 1.43e-82 | 240 |
| Msa0662960 | MtrunA17_Chr7g0256551 | 70.064 | 157 | 38 | 1 | 1 | 148 | 1 | 157 | 4.42e-79 | 234 |
| Msa0662960 | MtrunA17_Chr4g0021731 | 96.512 | 86 | 3 | 0 | 1 | 86 | 3 | 88 | 1.77e-56 | 171 |
| Msa0662960 | MtrunA17_Chr3g0124861 | 55.346 | 159 | 52 | 3 | 9 | 149 | 22 | 179 | 6.58e-56 | 175 |
| Msa0662960 | MtrunA17_Chr4g0059571 | 58.741 | 143 | 59 | 0 | 4 | 146 | 21 | 163 | 7.65e-54 | 169 |
| Msa0662960 | MtrunA17_Chr3g0128691 | 61.069 | 131 | 47 | 2 | 10 | 137 | 19 | 148 | 1.11e-51 | 161 |
| Msa0662960 | MtrunA17_Chr5g0414931 | 56.164 | 146 | 58 | 2 | 8 | 148 | 15 | 159 | 2.20e-51 | 163 |
| Msa0662960 | MtrunA17_Chr3g0118211 | 52.349 | 149 | 71 | 0 | 4 | 152 | 18 | 166 | 2.53e-51 | 162 |
| Msa0662960 | MtrunA17_Chr1g0170741 | 60.584 | 137 | 51 | 2 | 8 | 141 | 7 | 143 | 3.09e-50 | 159 |
| Msa0662960 | MtrunA17_Chr4g0030271 | 30.303 | 132 | 83 | 2 | 7 | 138 | 87 | 209 | 2.31e-15 | 72.0 |
| Msa0662960 | MtrunA17_Chr8g0345901 | 29.771 | 131 | 83 | 1 | 11 | 141 | 38 | 159 | 2.42e-15 | 72.0 |
| Msa0662960 | MtrunA17_Chr8g0376881 | 31.469 | 143 | 86 | 3 | 4 | 146 | 24 | 154 | 4.69e-15 | 71.2 |
| Msa0662960 | MtrunA17_Chr1g0181811 | 28.906 | 128 | 82 | 2 | 11 | 138 | 87 | 205 | 1.88e-13 | 66.6 |
| Msa0662960 | MtrunA17_Chr7g0275891 | 32.143 | 140 | 82 | 4 | 11 | 150 | 11 | 137 | 2.55e-13 | 65.9 |
| Msa0662960 | MtrunA17_Chr3g0123131 | 29.412 | 136 | 84 | 2 | 11 | 146 | 19 | 142 | 8.16e-13 | 64.7 |
| Msa0662960 | MtrunA17_Chr1g0149841 | 30.000 | 140 | 84 | 3 | 11 | 150 | 11 | 136 | 8.24e-13 | 64.7 |
| Msa0662960 | MtrunA17_Chr1g0161431 | 30.935 | 139 | 84 | 3 | 9 | 147 | 15 | 141 | 1.02e-12 | 64.7 |
| Msa0662960 | MtrunA17_Chr1g0149851 | 32.308 | 130 | 76 | 3 | 11 | 140 | 11 | 128 | 2.06e-12 | 63.5 |
| Msa0662960 | MtrunA17_Chr7g0275401 | 31.061 | 132 | 79 | 3 | 9 | 140 | 9 | 128 | 2.08e-12 | 63.2 |
| Msa0662960 | MtrunA17_Chr7g0276361 | 26.515 | 132 | 88 | 1 | 7 | 138 | 12 | 134 | 2.11e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662960 | AT3G57040.2 | 68.387 | 155 | 39 | 1 | 1 | 145 | 1 | 155 | 8.48e-74 | 221 |
| Msa0662960 | AT3G57040.1 | 68.387 | 155 | 39 | 1 | 1 | 145 | 1 | 155 | 8.48e-74 | 221 |
| Msa0662960 | AT2G41310.1 | 64.516 | 155 | 47 | 1 | 1 | 147 | 1 | 155 | 6.15e-71 | 213 |
| Msa0662960 | AT1G59940.1 | 62.595 | 131 | 49 | 0 | 8 | 138 | 32 | 162 | 9.93e-56 | 174 |
| Msa0662960 | AT1G59940.2 | 62.595 | 131 | 49 | 0 | 8 | 138 | 124 | 254 | 3.35e-54 | 174 |
| Msa0662960 | AT3G48100.1 | 58.993 | 139 | 56 | 1 | 2 | 139 | 18 | 156 | 4.05e-54 | 169 |
| Msa0662960 | AT1G10470.3 | 61.069 | 131 | 51 | 0 | 8 | 138 | 19 | 149 | 4.47e-54 | 171 |
| Msa0662960 | AT1G10470.1 | 61.069 | 131 | 51 | 0 | 8 | 138 | 33 | 163 | 6.33e-54 | 171 |
| Msa0662960 | AT5G62920.1 | 62.308 | 130 | 49 | 0 | 9 | 138 | 25 | 154 | 1.53e-52 | 165 |
| Msa0662960 | AT1G19050.1 | 55.882 | 136 | 60 | 0 | 8 | 143 | 23 | 158 | 3.57e-52 | 165 |
| Msa0662960 | AT1G74890.1 | 57.664 | 137 | 58 | 0 | 8 | 144 | 17 | 153 | 5.89e-52 | 164 |
| Msa0662960 | AT3G56380.1 | 54.348 | 138 | 62 | 1 | 4 | 140 | 15 | 152 | 3.42e-51 | 160 |
| Msa0662960 | AT3G56380.2 | 53.957 | 139 | 62 | 2 | 4 | 140 | 15 | 153 | 1.63e-49 | 156 |
| Msa0662960 | AT2G40670.1 | 53.237 | 139 | 56 | 2 | 8 | 140 | 28 | 163 | 3.29e-49 | 155 |
| Msa0662960 | AT2G40670.2 | 52.857 | 140 | 56 | 3 | 8 | 140 | 28 | 164 | 2.22e-47 | 151 |
| Msa0662960 | AT2G07440.1 | 67.213 | 61 | 20 | 0 | 87 | 147 | 9 | 69 | 5.34e-23 | 88.6 |
| Msa0662960 | AT1G10470.2 | 60.377 | 53 | 21 | 0 | 86 | 138 | 35 | 87 | 2.29e-16 | 72.4 |
| Msa0662960 | AT2G25180.1 | 33.077 | 130 | 75 | 3 | 11 | 140 | 19 | 136 | 5.84e-14 | 68.6 |
| Msa0662960 | AT5G07210.2 | 29.167 | 144 | 89 | 3 | 8 | 151 | 15 | 145 | 1.32e-13 | 67.4 |
| Msa0662960 | AT5G60100.7 | 31.250 | 128 | 79 | 2 | 11 | 138 | 66 | 184 | 4.13e-13 | 65.9 |
| Msa0662960 | AT5G60100.6 | 31.250 | 128 | 79 | 2 | 11 | 138 | 66 | 184 | 4.13e-13 | 65.9 |
| Msa0662960 | AT5G60100.4 | 31.250 | 128 | 79 | 2 | 11 | 138 | 66 | 184 | 4.13e-13 | 65.9 |
| Msa0662960 | AT5G60100.2 | 31.250 | 128 | 79 | 2 | 11 | 138 | 66 | 184 | 5.69e-13 | 65.5 |
| Msa0662960 | AT5G02810.1 | 28.125 | 128 | 83 | 2 | 11 | 138 | 80 | 198 | 6.21e-13 | 65.5 |
| Msa0662960 | AT1G67710.1 | 28.889 | 135 | 84 | 2 | 9 | 143 | 11 | 133 | 7.67e-13 | 65.1 |
| Msa0662960 | AT5G60100.5 | 31.250 | 128 | 79 | 2 | 11 | 138 | 66 | 184 | 1.13e-12 | 64.7 |
| Msa0662960 | AT5G60100.3 | 31.250 | 128 | 79 | 2 | 11 | 138 | 66 | 184 | 1.13e-12 | 64.7 |
| Msa0662960 | AT5G60100.1 | 31.250 | 128 | 79 | 2 | 11 | 138 | 66 | 184 | 1.13e-12 | 64.7 |
| Msa0662960 | AT3G16857.1 | 29.630 | 135 | 83 | 3 | 9 | 143 | 37 | 159 | 7.35e-12 | 62.4 |
| Msa0662960 | AT3G16857.2 | 29.630 | 135 | 83 | 3 | 9 | 143 | 37 | 159 | 7.83e-12 | 62.4 |
| Msa0662960 | AT2G46790.3 | 25.850 | 147 | 99 | 3 | 6 | 152 | 34 | 170 | 1.17e-11 | 61.6 |
| Msa0662960 | AT2G46790.1 | 25.850 | 147 | 99 | 3 | 6 | 152 | 34 | 170 | 1.40e-11 | 61.6 |
| Msa0662960 | AT1G49190.1 | 29.545 | 132 | 81 | 3 | 10 | 141 | 35 | 154 | 2.04e-11 | 60.8 |
| Msa0662960 | AT5G24470.1 | 28.571 | 133 | 84 | 2 | 9 | 140 | 50 | 172 | 3.87e-11 | 60.5 |
| Msa0662960 | AT1G49190.2 | 29.545 | 132 | 81 | 3 | 10 | 141 | 35 | 154 | 7.31e-11 | 59.7 |
Find 24 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATTGTTGAACTGGTTTC+AGG | 0.173333 | 4_4:-987305 | None:intergenic |
| CGGTATGTCTTTAAAAGATT+TGG | 0.218132 | 4_4:-987067 | None:intergenic |
| AGAGACTCAGTTCCATGTTT+TGG | 0.251951 | 4_4:+986165 | Msa0662960:CDS |
| AGTAAGGCTTTAAAATTTCT+TGG | 0.266953 | 4_4:+986471 | Msa0662960:CDS |
| TCTCACCTGCTAATCCTTGA+TGG | 0.304860 | 4_4:-987117 | None:intergenic |
| GGCTTTAAAATTTCTTGGTT+TGG | 0.308229 | 4_4:+986476 | Msa0662960:CDS |
| TTTACATCTGATTGTTGAAC+TGG | 0.343425 | 4_4:-987312 | None:intergenic |
| TCTTGGTTTGGTTGAGGATG+TGG | 0.414547 | 4_4:+986488 | Msa0662960:CDS |
| TTTGATGAAATCAAGAGTTA+AGG | 0.416978 | 4_4:+987350 | Msa0662960:CDS |
| TACAATGGACTCTGCTAGTA+AGG | 0.427203 | 4_4:+986455 | Msa0662960:CDS |
| TATTGTATGCCAGGGATGAC+TGG | 0.449232 | 4_4:+986654 | Msa0662960:CDS |
| AAAATTTCTTGGTTTGGTTG+AGG | 0.449963 | 4_4:+986482 | Msa0662960:CDS |
| ACTCTTGATTTCATCAAATG+AGG | 0.455768 | 4_4:-987345 | None:intergenic |
| ATAACAGATTATTGTATGCC+AGG | 0.463952 | 4_4:+986645 | Msa0662960:CDS |
| ATGTTCCATCAAGGATTAGC+AGG | 0.504757 | 4_4:+987112 | Msa0662960:CDS |
| TCTGAAGACATAATCACAAC+CGG | 0.515090 | 4_4:-987087 | None:intergenic |
| GATGTGGCTTCAGAAGTTCA+TGG | 0.523538 | 4_4:+986504 | Msa0662960:CDS |
| ATGTGGCTTCAGAAGTTCAT+GGG | 0.534908 | 4_4:+986505 | Msa0662960:CDS |
| CTTCAGAGAATGTTCCATCA+AGG | 0.539392 | 4_4:+987103 | Msa0662960:CDS |
| AGATCATAGCCAGTCATCCC+TGG | 0.546401 | 4_4:-986663 | None:intergenic |
| TAACAGATTATTGTATGCCA+GGG | 0.564090 | 4_4:+986646 | Msa0662960:CDS |
| TATCATCAACAGCCAAAACA+TGG | 0.580138 | 4_4:-986177 | None:intergenic |
| TGAAATGATAGTTACTACAA+TGG | 0.624009 | 4_4:+986440 | Msa0662960:intron |
| TGTGGCTTCAGAAGTTCATG+GGG | 0.695893 | 4_4:+986506 | Msa0662960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATAATTATTATTTATTTTG+TGG | + | chr4_4:986409-986428 | Msa0662960:intron | 10.0% |
| !!! | AATTTTTCTTAATATTATGA+TGG | + | chr4_4:986543-986562 | Msa0662960:intron | 10.0% |
| !!! | ATTATTTTGTTTTTCTATTT+AGG | + | chr4_4:986846-986865 | Msa0662960:intron | 10.0% |
| !!! | TTTGTTTTCTTTATAATTTT+GGG | - | chr4_4:986987-987006 | None:intergenic | 10.0% |
| !!! | GATAATTATTATTTATTTTG+TGG | + | chr4_4:986409-986428 | Msa0662960:intron | 10.0% |
| !!! | AATTTTTCTTAATATTATGA+TGG | + | chr4_4:986543-986562 | Msa0662960:intron | 10.0% |
| !!! | ATTATTTTGTTTTTCTATTT+AGG | + | chr4_4:986846-986865 | Msa0662960:intron | 10.0% |
| !!! | TTTGTTTTCTTTATAATTTT+GGG | - | chr4_4:986987-987006 | None:intergenic | 10.0% |
| !!! | CTTTGTTTTCTTTATAATTT+TGG | - | chr4_4:986988-987007 | None:intergenic | 15.0% |
| !!! | CTTTGTTTTCTTTATAATTT+TGG | - | chr4_4:986988-987007 | None:intergenic | 15.0% |
| !!! | TCAATATACTATTTTGTTGA+AGG | + | chr4_4:986355-986374 | Msa0662960:intron | 20.0% |
| !! | TTTCTTAAATAGAAGTGATT+TGG | + | chr4_4:986894-986913 | Msa0662960:intron | 20.0% |
| !!! | TAACATCAAGTTAACAATTT+TGG | - | chr4_4:987017-987036 | None:intergenic | 20.0% |
| !! | TAAACAATTCTTTGATTCTA+AGG | + | chr4_4:987041-987060 | Msa0662960:intron | 20.0% |
| !!! | TCAATATACTATTTTGTTGA+AGG | + | chr4_4:986355-986374 | Msa0662960:intron | 20.0% |
| !! | TTTCTTAAATAGAAGTGATT+TGG | + | chr4_4:986894-986913 | Msa0662960:intron | 20.0% |
| !!! | TAACATCAAGTTAACAATTT+TGG | - | chr4_4:987017-987036 | None:intergenic | 20.0% |
| !! | TAAACAATTCTTTGATTCTA+AGG | + | chr4_4:987041-987060 | Msa0662960:intron | 20.0% |
| ! | ATTGTAAAGATGTAATGTGA+TGG | + | chr4_4:986301-986320 | Msa0662960:intron | 25.0% |
| ! | TTGTAAAGATGTAATGTGAT+GGG | + | chr4_4:986302-986321 | Msa0662960:intron | 25.0% |
| ! | TGAAATGATAGTTACTACAA+TGG | + | chr4_4:986440-986459 | Msa0662960:intron | 25.0% |
| !!! | AGTAAGGCTTTAAAATTTCT+TGG | + | chr4_4:986471-986490 | Msa0662960:CDS | 25.0% |
| ! | TTGATTCATATTATTCATGC+AGG | + | chr4_4:986602-986621 | Msa0662960:intron | 25.0% |
| ! | TGAAAATGAGCACAAAATTA+TGG | - | chr4_4:986796-986815 | None:intergenic | 25.0% |
| !!! | TGATTAGTGATTACTGATTT+GGG | + | chr4_4:986956-986975 | Msa0662960:intron | 25.0% |
| !!! | CAAATCTTTTAAAGACATAC+CGG | + | chr4_4:987068-987087 | Msa0662960:CDS | 25.0% |
| ! | TTTGATGAAATCAAGAGTTA+AGG | + | chr4_4:987350-987369 | Msa0662960:CDS | 25.0% |
| ! | ATTGTAAAGATGTAATGTGA+TGG | + | chr4_4:986301-986320 | Msa0662960:intron | 25.0% |
| ! | TTGTAAAGATGTAATGTGAT+GGG | + | chr4_4:986302-986321 | Msa0662960:intron | 25.0% |
| ! | TGAAATGATAGTTACTACAA+TGG | + | chr4_4:986440-986459 | Msa0662960:intron | 25.0% |
| !!! | AGTAAGGCTTTAAAATTTCT+TGG | + | chr4_4:986471-986490 | Msa0662960:CDS | 25.0% |
| ! | TTGATTCATATTATTCATGC+AGG | + | chr4_4:986602-986621 | Msa0662960:intron | 25.0% |
| ! | TGAAAATGAGCACAAAATTA+TGG | - | chr4_4:986796-986815 | None:intergenic | 25.0% |
| !!! | TGATTAGTGATTACTGATTT+GGG | + | chr4_4:986956-986975 | Msa0662960:intron | 25.0% |
| !!! | CAAATCTTTTAAAGACATAC+CGG | + | chr4_4:987068-987087 | Msa0662960:CDS | 25.0% |
| ! | TTTGATGAAATCAAGAGTTA+AGG | + | chr4_4:987350-987369 | Msa0662960:CDS | 25.0% |
| ! | CATGAAAAGAAGAAGTTTTG+AGG | - | chr4_4:986234-986253 | None:intergenic | 30.0% |
| ! | CTCAAAACTTCTTCTTTTCA+TGG | + | chr4_4:986232-986251 | Msa0662960:CDS | 30.0% |
| TGTAAAGATGTAATGTGATG+GGG | + | chr4_4:986303-986322 | Msa0662960:intron | 30.0% | |
| ! | ACATATGAGCATAGTTTGTA+TGG | + | chr4_4:986332-986351 | Msa0662960:intron | 30.0% |
| !! | GGCTTTAAAATTTCTTGGTT+TGG | + | chr4_4:986476-986495 | Msa0662960:CDS | 30.0% |
| !! | AAAATTTCTTGGTTTGGTTG+AGG | + | chr4_4:986482-986501 | Msa0662960:CDS | 30.0% |
| !!! | GACTATTTTGATGTATACGT+TGG | + | chr4_4:986570-986589 | Msa0662960:intron | 30.0% |
| ATAACAGATTATTGTATGCC+AGG | + | chr4_4:986645-986664 | Msa0662960:CDS | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | + | chr4_4:986646-986665 | Msa0662960:CDS | 30.0% | |
| ! | CTGATTAGTGATTACTGATT+TGG | + | chr4_4:986955-986974 | Msa0662960:intron | 30.0% |
| ! | CGGTATGTCTTTAAAAGATT+TGG | - | chr4_4:987070-987089 | None:intergenic | 30.0% |
| ATGTGAAGTCTCACATATTA+TGG | + | chr4_4:987228-987247 | Msa0662960:intron | 30.0% | |
| !!! | TTGTATCAGATGTTTTGAAG+AGG | + | chr4_4:987266-987285 | Msa0662960:intron | 30.0% |
| !!! | TGTATCAGATGTTTTGAAGA+GGG | + | chr4_4:987267-987286 | Msa0662960:intron | 30.0% |
| TTTACATCTGATTGTTGAAC+TGG | - | chr4_4:987315-987334 | None:intergenic | 30.0% | |
| ACTCTTGATTTCATCAAATG+AGG | - | chr4_4:987348-987367 | None:intergenic | 30.0% | |
| ! | CATGAAAAGAAGAAGTTTTG+AGG | - | chr4_4:986234-986253 | None:intergenic | 30.0% |
| ! | CTCAAAACTTCTTCTTTTCA+TGG | + | chr4_4:986232-986251 | Msa0662960:CDS | 30.0% |
| TGTAAAGATGTAATGTGATG+GGG | + | chr4_4:986303-986322 | Msa0662960:intron | 30.0% | |
| ! | ACATATGAGCATAGTTTGTA+TGG | + | chr4_4:986332-986351 | Msa0662960:intron | 30.0% |
| !! | GGCTTTAAAATTTCTTGGTT+TGG | + | chr4_4:986476-986495 | Msa0662960:CDS | 30.0% |
| !! | AAAATTTCTTGGTTTGGTTG+AGG | + | chr4_4:986482-986501 | Msa0662960:CDS | 30.0% |
| !!! | GACTATTTTGATGTATACGT+TGG | + | chr4_4:986570-986589 | Msa0662960:intron | 30.0% |
| ATAACAGATTATTGTATGCC+AGG | + | chr4_4:986645-986664 | Msa0662960:CDS | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | + | chr4_4:986646-986665 | Msa0662960:CDS | 30.0% | |
| ! | CTGATTAGTGATTACTGATT+TGG | + | chr4_4:986955-986974 | Msa0662960:intron | 30.0% |
| ! | CGGTATGTCTTTAAAAGATT+TGG | - | chr4_4:987070-987089 | None:intergenic | 30.0% |
| ATGTGAAGTCTCACATATTA+TGG | + | chr4_4:987228-987247 | Msa0662960:intron | 30.0% | |
| !!! | TTGTATCAGATGTTTTGAAG+AGG | + | chr4_4:987266-987285 | Msa0662960:intron | 30.0% |
| !!! | TGTATCAGATGTTTTGAAGA+GGG | + | chr4_4:987267-987286 | Msa0662960:intron | 30.0% |
| TTTACATCTGATTGTTGAAC+TGG | - | chr4_4:987315-987334 | None:intergenic | 30.0% | |
| ACTCTTGATTTCATCAAATG+AGG | - | chr4_4:987348-987367 | None:intergenic | 30.0% | |
| TATCATCAACAGCCAAAACA+TGG | - | chr4_4:986180-986199 | None:intergenic | 35.0% | |
| TGATCTGCTCAGAAAAATCA+AGG | + | chr4_4:986680-986699 | Msa0662960:CDS | 35.0% | |
| TCTGAAGACATAATCACAAC+CGG | - | chr4_4:987090-987109 | None:intergenic | 35.0% | |
| TATCATCAACAGCCAAAACA+TGG | - | chr4_4:986180-986199 | None:intergenic | 35.0% | |
| TGATCTGCTCAGAAAAATCA+AGG | + | chr4_4:986680-986699 | Msa0662960:CDS | 35.0% | |
| TCTGAAGACATAATCACAAC+CGG | - | chr4_4:987090-987109 | None:intergenic | 35.0% | |
| ! | AGAGACTCAGTTCCATGTTT+TGG | + | chr4_4:986165-986184 | Msa0662960:CDS | 40.0% |
| ! | TACAATGGACTCTGCTAGTA+AGG | + | chr4_4:986455-986474 | Msa0662960:CDS | 40.0% |
| ATGTGGCTTCAGAAGTTCAT+GGG | + | chr4_4:986505-986524 | Msa0662960:CDS | 40.0% | |
| CTTCAGAGAATGTTCCATCA+AGG | + | chr4_4:987103-987122 | Msa0662960:CDS | 40.0% | |
| ! | ATGTTCCATCAAGGATTAGC+AGG | + | chr4_4:987112-987131 | Msa0662960:CDS | 40.0% |
| ! | CTGATTGTTGAACTGGTTTC+AGG | - | chr4_4:987308-987327 | None:intergenic | 40.0% |
| ! | AGAGACTCAGTTCCATGTTT+TGG | + | chr4_4:986165-986184 | Msa0662960:CDS | 40.0% |
| ! | TACAATGGACTCTGCTAGTA+AGG | + | chr4_4:986455-986474 | Msa0662960:CDS | 40.0% |
| ATGTGGCTTCAGAAGTTCAT+GGG | + | chr4_4:986505-986524 | Msa0662960:CDS | 40.0% | |
| CTTCAGAGAATGTTCCATCA+AGG | + | chr4_4:987103-987122 | Msa0662960:CDS | 40.0% | |
| ! | ATGTTCCATCAAGGATTAGC+AGG | + | chr4_4:987112-987131 | Msa0662960:CDS | 40.0% |
| ! | CTGATTGTTGAACTGGTTTC+AGG | - | chr4_4:987308-987327 | None:intergenic | 40.0% |
| !! | TCTTGGTTTGGTTGAGGATG+TGG | + | chr4_4:986488-986507 | Msa0662960:CDS | 45.0% |
| GATGTGGCTTCAGAAGTTCA+TGG | + | chr4_4:986504-986523 | Msa0662960:CDS | 45.0% | |
| TGTGGCTTCAGAAGTTCATG+GGG | + | chr4_4:986506-986525 | Msa0662960:CDS | 45.0% | |
| TATTGTATGCCAGGGATGAC+TGG | + | chr4_4:986654-986673 | Msa0662960:CDS | 45.0% | |
| TCTCACCTGCTAATCCTTGA+TGG | - | chr4_4:987120-987139 | None:intergenic | 45.0% | |
| !! | TCTTGGTTTGGTTGAGGATG+TGG | + | chr4_4:986488-986507 | Msa0662960:CDS | 45.0% |
| GATGTGGCTTCAGAAGTTCA+TGG | + | chr4_4:986504-986523 | Msa0662960:CDS | 45.0% | |
| TGTGGCTTCAGAAGTTCATG+GGG | + | chr4_4:986506-986525 | Msa0662960:CDS | 45.0% | |
| TATTGTATGCCAGGGATGAC+TGG | + | chr4_4:986654-986673 | Msa0662960:CDS | 45.0% | |
| TCTCACCTGCTAATCCTTGA+TGG | - | chr4_4:987120-987139 | None:intergenic | 45.0% | |
| AGATCATAGCCAGTCATCCC+TGG | - | chr4_4:986666-986685 | None:intergenic | 50.0% | |
| AGATCATAGCCAGTCATCCC+TGG | - | chr4_4:986666-986685 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 986151 | 987404 | 986151 | ID=Msa0662960;Name=Msa0662960 |
| chr4_4 | mRNA | 986151 | 987404 | 986151 | ID=Msa0662960-mRNA-1;Parent=Msa0662960;Name=Msa0662960-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|5|0|152 |
| chr4_4 | exon | 986151 | 986253 | 986151 | ID=Msa0662960-mRNA-1:exon:378;Parent=Msa0662960-mRNA-1 |
| chr4_4 | exon | 986451 | 986527 | 986451 | ID=Msa0662960-mRNA-1:exon:379;Parent=Msa0662960-mRNA-1 |
| chr4_4 | exon | 986624 | 986701 | 986624 | ID=Msa0662960-mRNA-1:exon:380;Parent=Msa0662960-mRNA-1 |
| chr4_4 | exon | 987063 | 987133 | 987063 | ID=Msa0662960-mRNA-1:exon:381;Parent=Msa0662960-mRNA-1 |
| chr4_4 | exon | 987275 | 987404 | 987275 | ID=Msa0662960-mRNA-1:exon:382;Parent=Msa0662960-mRNA-1 |
| chr4_4 | CDS | 986151 | 986253 | 986151 | ID=Msa0662960-mRNA-1:cds;Parent=Msa0662960-mRNA-1 |
| chr4_4 | CDS | 986451 | 986527 | 986451 | ID=Msa0662960-mRNA-1:cds;Parent=Msa0662960-mRNA-1 |
| chr4_4 | CDS | 986624 | 986701 | 986624 | ID=Msa0662960-mRNA-1:cds;Parent=Msa0662960-mRNA-1 |
| chr4_4 | CDS | 987063 | 987133 | 987063 | ID=Msa0662960-mRNA-1:cds;Parent=Msa0662960-mRNA-1 |
| chr4_4 | CDS | 987275 | 987404 | 987275 | ID=Msa0662960-mRNA-1:cds;Parent=Msa0662960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
