AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0663210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0663210 MtrunA17_Chr2g0287651 48.276 580 171 8 96 553 93 665 2.19e-173 513
Msa0663210 MtrunA17_Chr1g0203051 38.028 284 150 2 97 356 98 379 2.01e-60 211
Msa0663210 MtrunA17_Chr1g0203051 29.134 127 90 0 362 488 447 573 5.19e-12 68.6
Msa0663210 MtrunA17_Chr5g0448761 31.579 266 153 4 118 355 101 365 2.44e-39 153
Msa0663210 MtrunA17_Chr3g0082121 31.449 283 162 6 96 355 61 334 3.58e-35 140
Msa0663210 MtrunA17_Chr1g0202341 30.272 294 168 7 91 355 64 349 5.03e-34 137
Msa0663210 MtrunA17_Chr2g0324011 30.435 276 169 2 102 355 34 308 1.07e-33 135
Msa0663210 MtrunA17_Chr8g0363841 31.159 276 168 3 102 355 41 316 3.90e-33 134
Msa0663210 MtrunA17_Chr1g0207551 29.181 281 178 3 96 356 52 331 1.36e-32 133
Msa0663210 MtrunA17_Chr1g0164591 33.796 216 134 3 140 355 8 214 4.12e-32 126
Msa0663210 MtrunA17_Chr1g0203721 29.617 287 176 5 96 357 81 366 4.29e-32 132
Msa0663210 MtrunA17_Chr7g0258861 29.304 273 169 2 91 339 23 295 1.90e-31 124
Msa0663210 MtrunA17_Chr5g0441581 32.719 217 137 2 140 356 113 320 2.95e-31 129
Msa0663210 MtrunA17_Chr6g0458391 30.314 287 152 8 97 357 244 508 4.36e-31 128
Msa0663210 MtrunA17_Chr6g0477261 36.025 161 103 0 197 357 22 182 1.09e-30 127
Msa0663210 MtrunA17_Chr2g0296781 30.924 249 148 3 131 356 45 292 3.11e-30 125
Msa0663210 MtrunA17_Chr3g0080351 32.035 231 133 4 125 355 158 364 1.49e-29 124
Msa0663210 MtrunA17_Chr5g0431001 28.767 292 174 6 97 355 80 370 4.02e-27 115
Msa0663210 MtrunA17_Chr1g0198761 27.055 292 179 5 97 355 66 356 6.19e-27 115
Msa0663210 MtrunA17_Chr2g0291591 32.804 189 113 2 170 355 181 358 1.10e-26 114
Msa0663210 MtrunA17_Chr2g0291591 28.966 145 92 5 362 504 431 566 6.05e-11 65.1
Msa0663210 MtrunA17_Chr2g0276841 26.897 290 183 5 97 358 89 377 6.21e-25 109
Msa0663210 MtrunA17_Chr2g0329031 26.690 281 180 6 96 357 32 305 1.86e-24 108
Msa0663210 MtrunA17_Chr1g0196541 32.877 146 98 0 211 356 147 292 4.19e-22 100
Msa0663210 MtrunA17_Chr5g0440451 24.567 289 184 7 97 355 62 346 5.75e-22 100
Msa0663210 MtrunA17_Chr2g0290391 23.432 303 185 5 97 358 70 366 8.34e-21 96.7
Msa0663210 MtrunA17_Chr2g0308841 29.897 194 100 2 362 519 40 233 1.09e-20 92.0
Msa0663210 MtrunA17_Chr2g0291581 34.615 130 85 0 226 355 226 355 6.59e-20 94.0
Msa0663210 MtrunA17_Chr5g0448511 38.710 93 57 0 263 355 45 137 8.91e-20 92.8
Msa0663210 MtrunA17_Chr3g0118611 26.699 206 134 4 164 355 41 243 1.48e-19 92.8
Msa0663210 MtrunA17_Chr2g0287061 25.095 263 165 5 102 355 207 446 3.24e-19 91.7
Msa0663210 MtrunA17_Chr2g0294841 26.531 294 182 7 97 358 64 355 2.13e-18 89.4
Msa0663210 MtrunA17_Chr8g0340801 32.710 107 70 1 167 273 3 107 3.35e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0663210 AT4G38180.1 32.061 262 153 3 118 355 114 374 2.55e-41 159
Msa0663210 AT4G38180.1 26.087 138 98 2 362 499 448 581 1.42e-11 67.8
Msa0663210 AT4G15090.1 35.135 222 142 2 135 355 130 350 6.25e-37 147
Msa0663210 AT4G15090.5 35.135 222 142 2 135 355 130 350 6.25e-37 147
Msa0663210 AT4G15090.3 35.135 222 142 2 135 355 130 350 6.25e-37 147
Msa0663210 AT4G15090.2 35.135 222 142 2 135 355 130 350 6.25e-37 147
Msa0663210 AT4G15090.4 35.135 222 142 2 135 355 130 350 6.25e-37 147
Msa0663210 AT3G22170.2 31.034 232 137 2 124 355 151 359 7.06e-29 122
Msa0663210 AT3G22170.1 31.034 232 137 2 124 355 151 359 7.06e-29 122
Msa0663210 AT1G76320.3 31.364 220 145 3 127 346 65 278 1.43e-25 112
Msa0663210 AT1G76320.2 28.625 269 167 5 97 346 16 278 1.84e-25 111
Msa0663210 AT1G76320.1 28.625 269 167 5 97 346 16 278 2.09e-25 111
Msa0663210 AT1G76320.4 28.625 269 167 5 97 346 16 278 2.09e-25 111
Msa0663210 AT3G06250.2 27.941 272 153 7 97 355 209 450 1.09e-24 109
Msa0663210 AT3G06250.1 27.941 272 153 7 97 355 209 450 1.09e-24 109
Msa0663210 AT3G06250.3 27.941 272 153 7 97 355 209 450 1.09e-24 109
Msa0663210 AT1G10240.2 26.552 290 184 5 97 358 67 355 9.03e-24 106
Msa0663210 AT1G10240.1 26.552 290 184 5 97 358 67 355 9.03e-24 106
Msa0663210 AT5G18960.2 27.106 273 157 10 97 355 230 474 7.98e-22 100
Msa0663210 AT5G18960.1 27.106 273 157 10 97 355 230 474 7.98e-22 100
Msa0663210 AT5G28530.1 25.333 300 177 7 97 355 74 367 1.85e-21 99.0
Msa0663210 AT5G28530.3 25.333 300 177 7 97 355 74 367 2.19e-21 99.0
Msa0663210 AT5G28530.2 25.333 300 177 7 97 355 74 367 2.19e-21 99.0
Msa0663210 AT1G80010.1 32.143 140 94 1 216 355 258 396 3.78e-20 95.1
Msa0663210 AT2G27110.2 32.800 125 84 0 230 354 196 320 3.02e-19 92.4
Msa0663210 AT2G27110.1 32.800 125 84 0 230 354 196 320 3.02e-19 92.4
Msa0663210 AT2G27110.3 32.800 125 84 0 230 354 51 175 3.23e-19 92.0
Msa0663210 AT1G52520.1 34.615 130 84 1 226 355 243 371 7.82e-19 90.9
Msa0663210 AT4G19990.3 26.339 224 124 3 135 355 113 298 9.09e-19 90.9
Msa0663210 AT4G19990.4 26.339 224 124 3 135 355 113 298 9.09e-19 90.9
Msa0663210 AT4G19990.1 26.339 224 124 3 135 355 56 241 9.22e-19 90.5
Msa0663210 AT4G19990.5 26.339 224 124 3 135 355 113 298 9.32e-19 90.9
Msa0663210 AT4G19990.7 26.339 224 124 3 135 355 127 312 9.40e-19 90.9
Msa0663210 AT4G19990.6 26.339 224 124 3 135 355 113 298 1.56e-18 90.1
Msa0663210 AT4G19990.2 26.339 224 124 3 135 355 113 298 1.56e-18 90.1
Msa0663210 AT4G38170.1 33.594 128 76 4 231 355 18 139 6.54e-18 87.4
Msa0663210 AT2G32250.5 33.333 99 66 0 257 355 196 294 3.72e-14 76.3
Msa0663210 AT2G32250.8 33.333 99 66 0 257 355 155 253 3.89e-14 76.3
Msa0663210 AT2G32250.7 33.333 99 66 0 257 355 155 253 3.97e-14 76.3
Msa0663210 AT2G32250.6 33.333 99 66 0 257 355 196 294 4.39e-14 75.9
Msa0663210 AT2G32250.1 33.333 99 66 0 257 355 196 294 4.39e-14 75.9
Msa0663210 AT2G32250.3 33.333 99 66 0 257 355 196 294 4.39e-14 75.9
Msa0663210 AT2G32250.2 33.333 99 66 0 257 355 196 294 4.46e-14 75.9
Msa0663210 AT2G32250.4 33.333 99 66 0 257 355 196 294 4.46e-14 75.9

Find 106 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAATAACTTGTCATATAA+TGG 0.222690 4_4:+1881441 Msa0663210:CDS
GACGTTTGAAATGTCTATTT+TGG 0.234421 4_4:+1881653 Msa0663210:CDS
CACTCACAAACAGTTATATT+TGG 0.234686 4_4:+1881793 Msa0663210:CDS
TGCATTTACACCCTGTTTAT+CGG 0.264525 4_4:+1881368 Msa0663210:CDS
TGTTCACTACAGACCCAAAA+AGG 0.266221 4_4:+1881282 Msa0663210:intron
CCATCTGTTACAACTGCTTT+TGG 0.274383 4_4:-1881898 None:intergenic
TTCTTTGTTCTCATATGTTT+TGG 0.280828 4_4:-1882376 None:intergenic
TTGTTAGGAAGAGTTATATT+AGG 0.336688 4_4:+1881119 Msa0663210:CDS
CGCAACAAAATCAAACATTC+TGG 0.341835 4_4:-1882904 None:intergenic
TTCTATGAGGGAGGCGATAA+AGG 0.353001 4_4:+1881927 Msa0663210:CDS
AAGAGTTATGTTAGGAAGAA+AGG 0.363884 4_4:+1882483 Msa0663210:CDS
CATTGGTTGGAGTAGGTTCA+TGG 0.364482 4_4:-1881342 None:intergenic
AGATCAGATTATTTCTGCTT+TGG 0.368517 4_4:+1881691 Msa0663210:CDS
ATAATAACTTGTCATATAAT+GGG 0.403187 4_4:+1881442 Msa0663210:CDS
GCTCAGAAGGGTGGATATCC+TGG 0.409450 4_4:+1881475 Msa0663210:CDS
GGAAGTAGATTCAAAATTGA+TGG 0.410232 4_4:+1882975 Msa0663210:CDS
AATTATAGTGCTGGTGATAA+AGG 0.413025 4_4:+1880804 Msa0663210:CDS
TTTGTTGCGTTGGATGAAAA+AGG 0.415272 4_4:+1882918 Msa0663210:CDS
CAGCACAGGGGATGAAAACT+TGG 0.418956 4_4:-1882586 None:intergenic
TACCTGCGTGACGATTTCTT+TGG 0.423240 4_4:+1882414 Msa0663210:CDS
GCTGATAGATATGATGAAAC+TGG 0.434990 4_4:+1880747 Msa0663210:CDS
AGTGATGATGGTGATTGTTC+TGG 0.436804 4_4:+1880780 Msa0663210:CDS
TTGATGGAGATTGCTCGATA+TGG 0.438349 4_4:+1882991 Msa0663210:CDS
AGGGCATGAGCCCTCGTCTC+TGG 0.439511 4_4:-1885102 None:intergenic
TGAGGCTACTGAAATCTATA+CGG 0.444883 4_4:+1882635 Msa0663210:CDS
GAGAGAAGAAGCATTTATCA+AGG 0.445750 4_4:+1881200 Msa0663210:CDS
AAAGATGAGGGCTCATGCCC+TGG 0.447607 4_4:+1885016 Msa0663210:intron
AAATCATAAAGAGTTATGTT+AGG 0.452282 4_4:+1882475 Msa0663210:CDS
CTGCGTGACGATTTCTTTGG+TGG 0.454197 4_4:+1882417 Msa0663210:CDS
AAGGGTGGATATCCTGGTGT+TGG 0.458467 4_4:+1881481 Msa0663210:CDS
TATAAGTACGGTAAGTGTAA+AGG 0.460291 4_4:+1881091 Msa0663210:intron
ACAAAATCACCAACGGATAG+TGG 0.461754 4_4:-1881756 None:intergenic
GGGATACATGGTGGCTCAGA+AGG 0.464555 4_4:+1881462 Msa0663210:CDS
TCTTGAATGTGGACTATTGT+GGG 0.469444 4_4:+1882953 Msa0663210:CDS
AGGGTGGATATCCTGGTGTT+GGG 0.476260 4_4:+1881482 Msa0663210:CDS
ATTTGGTGCTGCATTGGTGA+TGG 0.484577 4_4:+1881810 Msa0663210:CDS
TTCTTGAATGTGGACTATTG+TGG 0.490201 4_4:+1882952 Msa0663210:CDS
CGCAGATGAGTTGTCAGCAC+AGG 0.491267 4_4:-1882600 None:intergenic
TGTGGTTGAGCAAAAGCTCC+AGG 0.499542 4_4:-1885034 None:intergenic
GCAGTATGTATGCAACAAGC+AGG 0.502107 4_4:+1881171 Msa0663210:CDS
GTGAAAGAAGAGATTATGAA+AGG 0.507624 4_4:+1882675 Msa0663210:CDS
ATATGAGAACAAAGAATTGT+GGG 0.511340 4_4:+1882383 Msa0663210:CDS
AGTGGCAGAATATTCACAAA+AGG 0.514210 4_4:-1881623 None:intergenic
GTATATAAAGCACAGATTGA+TGG 0.515508 4_4:+1881403 Msa0663210:CDS
GAGACGAGGGCTCATGCCCT+AGG 0.516223 4_4:+1885105 Msa0663210:CDS
CAGATGGTGATGGTTCTATG+AGG 0.523380 4_4:+1881914 Msa0663210:CDS
TGTTCTGGTAATTATAGTGC+TGG 0.527794 4_4:+1880795 Msa0663210:CDS
AAACAATAGAAACTTATATG+TGG 0.527967 4_4:+1881836 Msa0663210:CDS
AGTTATATTTGGTGCTGCAT+TGG 0.533546 4_4:+1881804 Msa0663210:CDS
GAAGATTGGTTTCTTGAATG+TGG 0.544770 4_4:+1882942 Msa0663210:CDS
CATATGAGAACAAAGAATTG+TGG 0.552735 4_4:+1882382 Msa0663210:CDS
TTGTCATATAATGGGATACA+TGG 0.555297 4_4:+1881450 Msa0663210:CDS
GTAGATGATGACGATAATGA+TGG 0.558437 4_4:+1880681 Msa0663210:CDS
TGTAAATGCACAGCATTGGT+TGG 0.565762 4_4:-1881355 None:intergenic
TTCTTAGTGAACCCAACACC+AGG 0.567834 4_4:-1881493 None:intergenic
TACATGGTGGCTCAGAAGGG+TGG 0.573659 4_4:+1881466 Msa0663210:CDS
GCAGATGAGTTGTCAGCACA+GGG 0.575960 4_4:-1882599 None:intergenic
AACAATAGAAACTTATATGT+GGG 0.579140 4_4:+1881837 Msa0663210:CDS
GATGAAAGTCAAGGTGATGA+AGG 0.579998 4_4:+1880848 Msa0663210:CDS
TTGACAAAATATCTTGAGGA+AGG 0.583257 4_4:+1882753 Msa0663210:CDS
AGGGTGTAAATGCACAGCAT+TGG 0.584309 4_4:-1881359 None:intergenic
CAGTATGTATGCAACAAGCA+GGG 0.584535 4_4:+1881172 Msa0663210:CDS
CCAAAAGCAGTTGTAACAGA+TGG 0.588696 4_4:+1881898 Msa0663210:CDS
GGTGATAAAGGTGAAGATGA+TGG 0.589452 4_4:+1880816 Msa0663210:CDS
ATGCGTGCTGTTATTAAGGA+TGG 0.593265 4_4:+1881544 Msa0663210:CDS
GAATATTCTGCCACTGATGA+CGG 0.599778 4_4:+1881631 Msa0663210:CDS
GAATATTCACAAAAGGAATG+TGG 0.603006 4_4:-1881616 None:intergenic
GGAGACAATGAAAGTGATGA+TGG 0.606535 4_4:+1880768 Msa0663210:CDS
AAAGGAATGTGGATCAGTTG+AGG 0.611183 4_4:-1881605 None:intergenic
GGATACATGGTGGCTCAGAA+GGG 0.612576 4_4:+1881463 Msa0663210:CDS
GAGCAAAAGCTCCATCGTTG+TGG 0.612868 4_4:-1885052 None:intergenic
TTATTTCTGCTTTGGCAATG+TGG 0.618102 4_4:+1881699 Msa0663210:CDS
GCAGTTGTAACAGATGGTGA+TGG 0.618869 4_4:+1881904 Msa0663210:CDS
TCTGCGTTGTCTTGAACATG+AGG 0.620985 4_4:+1882617 Msa0663210:CDS
AATCTGTGCTTTATATACCT+CGG 0.625433 4_4:-1881398 None:intergenic
AATGAAAGTCATGGTAGTGA+AGG 0.630466 4_4:+1880941 Msa0663210:CDS
GACGATAATGATGGGAGTCA+TGG 0.632283 4_4:+1880690 Msa0663210:CDS
TTTCAAACGTCCGTCATCAG+TGG 0.632560 4_4:-1881641 None:intergenic
GGTCATGGTAATGAAAGTCA+TGG 0.632592 4_4:+1880932 Msa0663210:CDS
AGTATGTATGCAACAAGCAG+GGG 0.634341 4_4:+1881173 Msa0663210:CDS
AGATGGTGATGGTTCTATGA+GGG 0.637450 4_4:+1881915 Msa0663210:CDS
TGCACAGCATTGGTTGGAGT+AGG 0.638605 4_4:-1881349 None:intergenic
GAACAAATACCACTATCCGT+TGG 0.644673 4_4:+1881747 Msa0663210:CDS
GTGGTTGAGCAAAAGCTCCA+GGG 0.647257 4_4:-1885033 None:intergenic
TGGTGATGGTTCTATGAGGG+AGG 0.649015 4_4:+1881918 Msa0663210:CDS
GAAGTTGACAAAATATCTTG+AGG 0.651334 4_4:+1882749 Msa0663210:CDS
CAAATATAACTGTTTGTGAG+TGG 0.651904 4_4:-1881792 None:intergenic
GAAAGTGAAGGTCATGGTGA+AGG 0.655267 4_4:+1880896 Msa0663210:CDS
GTATTTGTTCTTGTTATACG+TGG 0.659186 4_4:-1881734 None:intergenic
TATGAGGGAGGCGATAAAGG+CGG 0.662119 4_4:+1881930 Msa0663210:CDS
CACCAAAGAAATCGTCACGC+AGG 0.662756 4_4:-1882416 None:intergenic
TCATATAATGGGATACATGG+TGG 0.669224 4_4:+1881453 Msa0663210:CDS
CTTGAATGTGGACTATTGTG+GGG 0.678410 4_4:+1882954 Msa0663210:CDS
TAGCCAGACAAAATCACCAA+CGG 0.682784 4_4:-1881763 None:intergenic
GGTGATGAAAGTGAAGGTCA+TGG 0.683798 4_4:+1880917 Msa0663210:CDS
GGTGATGAAAGTGAAGGTCA+TGG 0.685101 4_4:+1880890 Msa0663210:CDS
AGGTGTTGCACTGAGTGTGA+AGG 0.686205 4_4:+1882695 Msa0663210:CDS
TAGATGATGACGATAATGAT+GGG 0.690417 4_4:+1880682 Msa0663210:CDS
AGTCAAGGTGATGAAGGTGA+AGG 0.696692 4_4:+1880854 Msa0663210:CDS
TGTTTATCGGAAAATATCCG+AGG 0.701344 4_4:+1881381 Msa0663210:CDS
AGTGAAGGTGATGAAAGTGA+AGG 0.717258 4_4:+1880884 Msa0663210:CDS
AAGTGATGTGATGAAAGTCA+AGG 0.717313 4_4:+1880839 Msa0663210:CDS
TTAACAGTGAGATTGTCATG+AGG 0.736450 4_4:+1881149 Msa0663210:CDS
GGTGAAGGTGATGAAAGTGA+AGG 0.737036 4_4:+1880911 Msa0663210:CDS
GGTGAAGGTGATGAAAGTGA+AGG 0.739796 4_4:+1880869 Msa0663210:CDS
CAGATGAGTTGTCAGCACAG+GGG 0.773409 4_4:-1882598 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATAATTAAATAAA+AGG - chr4_4:1883082-1883101 None:intergenic 0.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr4_4:1882126-1882145 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr4_4:1882127-1882146 None:intergenic 10.0%
!! AAAATAATTAAATAAAAGGA+GGG - chr4_4:1883078-1883097 None:intergenic 10.0%
!! AAAAATAATTAAATAAAAGG+AGG - chr4_4:1883079-1883098 None:intergenic 10.0%
!! ATATGAATTATATATATTCT+TGG + chr4_4:1884250-1884269 Msa0663210:intron 10.0%
!!! AAATTTGTTTAAGGTATAAT+TGG + chr4_4:1879598-1879617 Msa0663210:intron 15.0%
!! GTTTATATTATATTATAGTG+AGG + chr4_4:1879683-1879702 Msa0663210:intron 15.0%
!!! ATTTAAGTAATATTTTGTCA+TGG + chr4_4:1879758-1879777 Msa0663210:intron 15.0%
!!! TTTATTATCTTTTAGTAGTT+AGG + chr4_4:1879884-1879903 Msa0663210:intron 15.0%
!! CTTAGAATTATAATTATTCT+CGG + chr4_4:1879937-1879956 Msa0663210:intron 15.0%
!! TAAAAAACACAATGAAATAT+GGG - chr4_4:1880454-1880473 None:intergenic 15.0%
!! ATAAAAAACACAATGAAATA+TGG - chr4_4:1880455-1880474 None:intergenic 15.0%
!!! AAATCGAATTATTTTAGTTA+GGG - chr4_4:1880625-1880644 None:intergenic 15.0%
!!! AAAATCGAATTATTTTAGTT+AGG - chr4_4:1880626-1880645 None:intergenic 15.0%
!!! TAACTAAAATAATTCGATTT+TGG + chr4_4:1880625-1880644 Msa0663210:intron 15.0%
!!! TACGATTTTTATTATAAGTA+CGG + chr4_4:1881079-1881098 Msa0663210:intron 15.0%
!!! AATAATAACTTGTCATATAA+TGG + chr4_4:1881441-1881460 Msa0663210:CDS 15.0%
!!! ATAATAACTTGTCATATAAT+GGG + chr4_4:1881442-1881461 Msa0663210:CDS 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr4_4:1882061-1882080 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr4_4:1882062-1882081 None:intergenic 15.0%
!! AAAGTGAAATATATTGTATT+GGG - chr4_4:1882102-1882121 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr4_4:1882125-1882144 None:intergenic 15.0%
!! TATAACACAAAAAAACATAT+GGG - chr4_4:1882862-1882881 None:intergenic 15.0%
!! GTGATTTATTTATATATATG+AGG + chr4_4:1883120-1883139 Msa0663210:intron 15.0%
!! ATTATTAATGTAAGTAGAAT+TGG + chr4_4:1883194-1883213 Msa0663210:intron 15.0%
!! TAGAAATAAGAATAAGTTAT+TGG + chr4_4:1883226-1883245 Msa0663210:intron 15.0%
!! AGAAATAAGAATAAGTTATT+GGG + chr4_4:1883227-1883246 Msa0663210:intron 15.0%
!! TATTGTTTATAATAACAACT+AGG + chr4_4:1884155-1884174 Msa0663210:intron 15.0%
!!! TAATTCATATATTTCTAGAA+GGG - chr4_4:1884240-1884259 None:intergenic 15.0%
!!! ATAATTCATATATTTCTAGA+AGG - chr4_4:1884241-1884260 None:intergenic 15.0%
!! AATGTTATATATACATTATG+TGG + chr4_4:1884724-1884743 Msa0663210:intron 15.0%
!!! TTTATTTAAGATGTAAATGT+CGG + chr4_4:1884850-1884869 Msa0663210:intron 15.0%
!! CTATAGTAATGATATATTGT+TGG - chr4_4:1879576-1879595 None:intergenic 20.0%
!! CAACAATATATCATTACTAT+AGG + chr4_4:1879574-1879593 Msa0663210:intron 20.0%
!!! ACTATAGGAAAATTTGTTTA+AGG + chr4_4:1879589-1879608 Msa0663210:intron 20.0%
!! ATTGGAATAATGAAAAATGT+AGG + chr4_4:1879616-1879635 Msa0663210:intron 20.0%
!! TATCCATACTACTATTATAA+GGG - chr4_4:1879658-1879677 None:intergenic 20.0%
!! TTATCCATACTACTATTATA+AGG - chr4_4:1879659-1879678 None:intergenic 20.0%
!! TATATTATATTATAGTGAGG+TGG + chr4_4:1879686-1879705 Msa0663210:intron 20.0%
!!! TCATACTTTTCCTATTTTAA+TGG + chr4_4:1879710-1879729 Msa0663210:intron 20.0%
!! AAGGTAAATACCATTAAAAT+AGG - chr4_4:1879723-1879742 None:intergenic 20.0%
!! CATTTCTATTCAAAGTAAAA+TGG + chr4_4:1879854-1879873 Msa0663210:intron 20.0%
!!! TTCAACTTTAACTTTCTTTA+TGG - chr4_4:1879999-1880018 None:intergenic 20.0%
!! TACTTACAAATTATGTAGAA+CGG - chr4_4:1880134-1880153 None:intergenic 20.0%
!! ATAACAAAAAGATAAATGCA+TGG + chr4_4:1880188-1880207 Msa0663210:intron 20.0%
!! ATAAATTCATTAACTGTTGA+AGG + chr4_4:1881019-1881038 Msa0663210:intron 20.0%
!! AAACAATAGAAACTTATATG+TGG + chr4_4:1881836-1881855 Msa0663210:CDS 20.0%
!! AACAATAGAAACTTATATGT+GGG + chr4_4:1881837-1881856 Msa0663210:CDS 20.0%
!! GAAAGTGAAATATATTGTAT+TGG - chr4_4:1882103-1882122 None:intergenic 20.0%
!!! CTCTTTATGATTTTATTAAC+AGG - chr4_4:1882468-1882487 None:intergenic 20.0%
!! AAATCATAAAGAGTTATGTT+AGG + chr4_4:1882475-1882494 Msa0663210:CDS 20.0%
!!! ATTTTTGCATAATTTTGATG+AGG + chr4_4:1882518-1882537 Msa0663210:CDS 20.0%
!! CTATAACACAAAAAAACATA+TGG - chr4_4:1882863-1882882 None:intergenic 20.0%
!!! CATATGTTTTTTTGTGTTAT+AGG + chr4_4:1882861-1882880 Msa0663210:intron 20.0%
!!! AGGGATTAGTATTATAAATA+AGG + chr4_4:1883269-1883288 Msa0663210:intron 20.0%
!! TATTATAAATAAGGAAGCTT+AGG + chr4_4:1883278-1883297 Msa0663210:intron 20.0%
!! TTTGTAAGATTATGAGAATT+AGG + chr4_4:1883502-1883521 Msa0663210:intron 20.0%
!! TTGTAAGATTATGAGAATTA+GGG + chr4_4:1883503-1883522 Msa0663210:intron 20.0%
!! ATAATGAATCATATTCACAA+GGG - chr4_4:1883810-1883829 None:intergenic 20.0%
!! TAACTAATTTACTTGATACA+TGG - chr4_4:1883896-1883915 None:intergenic 20.0%
!! CATTATTAATTAACCATTTC+AGG + chr4_4:1883960-1883979 Msa0663210:intron 20.0%
!!! ATACAAGTTTTACTAAAACT+AGG + chr4_4:1884058-1884077 Msa0663210:intron 20.0%
!!! AAGAGCATAAATATTAGAAT+CGG + chr4_4:1884103-1884122 Msa0663210:intron 20.0%
!!! TAAATATTAGAATCGGTTTA+TGG + chr4_4:1884110-1884129 Msa0663210:intron 20.0%
!! ATAGGTAAATAAAACTTTAG+TGG + chr4_4:1884198-1884217 Msa0663210:intron 20.0%
!! AATCGTTTCAAATTTCAATA+GGG - chr4_4:1884322-1884341 None:intergenic 20.0%
! ATCCATACTACTATTATAAG+GGG - chr4_4:1879657-1879676 None:intergenic 25.0%
! ATGAATCCTATTTATAGTCA+AGG - chr4_4:1879792-1879811 None:intergenic 25.0%
! ACAAAAAAAAATCACTGTGA+AGG + chr4_4:1880417-1880436 Msa0663210:intron 25.0%
!! TTTTGACCATGATAAACAAA+AGG + chr4_4:1880549-1880568 Msa0663210:intron 25.0%
!!! ATTAAGCCTTTTGTTTATCA+TGG - chr4_4:1880558-1880577 None:intergenic 25.0%
!! AATTTTACGAAGAATACTCA+AGG + chr4_4:1880714-1880733 Msa0663210:CDS 25.0%
!! ATTTTACGAAGAATACTCAA+GGG + chr4_4:1880715-1880734 Msa0663210:CDS 25.0%
! ATTAACTGTTGAAGGAATAA+GGG + chr4_4:1881027-1881046 Msa0663210:intron 25.0%
! TTGTTAGGAAGAGTTATATT+AGG + chr4_4:1881119-1881138 Msa0663210:CDS 25.0%
!!! ACGTTTGAAATGTCTATTTT+GGG + chr4_4:1881654-1881673 Msa0663210:CDS 25.0%
!!! ACTAGTTTTCTAGATTGTAT+GGG + chr4_4:1881865-1881884 Msa0663210:CDS 25.0%
!!! GACACTTTTTTTTAGAAAAC+GGG - chr4_4:1881992-1882011 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+CGG - chr4_4:1881993-1882012 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG - chr4_4:1882014-1882033 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG - chr4_4:1882015-1882034 None:intergenic 25.0%
!! AGCAATGTACTCTAATTTTA+CGG + chr4_4:1882283-1882302 Msa0663210:intron 25.0%
!! TTCTTTGTTCTCATATGTTT+TGG - chr4_4:1882379-1882398 None:intergenic 25.0%
! ATATGAGAACAAAGAATTGT+GGG + chr4_4:1882383-1882402 Msa0663210:CDS 25.0%
!! ATGTGTTTACAAATTTTTGC+AGG + chr4_4:1883025-1883044 Msa0663210:intron 25.0%
!! TGTGTTTACAAATTTTTGCA+GGG + chr4_4:1883026-1883045 Msa0663210:intron 25.0%
!! GGTGTTAGTATTTTATTATG+TGG + chr4_4:1883141-1883160 Msa0663210:intron 25.0%
! ATTAATGTAAGTAGAATTGG+AGG + chr4_4:1883197-1883216 Msa0663210:intron 25.0%
! TATTGGGACTAAATAGATTT+AGG + chr4_4:1883243-1883262 Msa0663210:intron 25.0%
! ACTAAATAGATTTAGGAAGA+GGG + chr4_4:1883250-1883269 Msa0663210:intron 25.0%
!!! TTTGATGTTAAACTGCTTTT+TGG + chr4_4:1883312-1883331 Msa0663210:intron 25.0%
! GATTTCAGAAAAACAATCTA+AGG + chr4_4:1883404-1883423 Msa0663210:intron 25.0%
!! AGAAAAACAATCTAAGGTAA+GGG + chr4_4:1883410-1883429 Msa0663210:intron 25.0%
! GATAATGAATCATATTCACA+AGG - chr4_4:1883811-1883830 None:intergenic 25.0%
!! TTTACTTGATACATGGTTTT+TGG - chr4_4:1883889-1883908 None:intergenic 25.0%
! TATACAAACAAAACCTGAAA+TGG - chr4_4:1883976-1883995 None:intergenic 25.0%
!!! TATTTCTAGAAGGGAATTAA+AGG - chr4_4:1884231-1884250 None:intergenic 25.0%
! TGAAGTACAAGAAATTACAA+AGG - chr4_4:1884288-1884307 None:intergenic 25.0%
! CAATCGTTTCAAATTTCAAT+AGG - chr4_4:1884323-1884342 None:intergenic 25.0%
! ACGAGACAAAAAACTAAAAT+AGG - chr4_4:1884447-1884466 None:intergenic 25.0%
! ATTATCGTAACTAATTCATG+TGG + chr4_4:1884520-1884539 Msa0663210:intron 25.0%
! TTATCGTAACTAATTCATGT+GGG + chr4_4:1884521-1884540 Msa0663210:intron 25.0%
TTCCCCTTATAATAGTAGTA+TGG + chr4_4:1879652-1879671 Msa0663210:intron 30.0%
TCAACACCTTGACTATAAAT+AGG + chr4_4:1879783-1879802 Msa0663210:intron 30.0%
GTTAAAGAAGTTAACCGATT+GGG - chr4_4:1880077-1880096 None:intergenic 30.0%
TGTTAAAGAAGTTAACCGAT+TGG - chr4_4:1880078-1880097 None:intergenic 30.0%
GAAAGAATCATGTAAGAAGT+GGG - chr4_4:1880110-1880129 None:intergenic 30.0%
AGAAAGAATCATGTAAGAAG+TGG - chr4_4:1880111-1880130 None:intergenic 30.0%
! TGATTTTCAACCTTCACAAA+AGG + chr4_4:1880227-1880246 Msa0663210:intron 30.0%
! ACGTTTGTTGAAGAATATTG+TGG - chr4_4:1880341-1880360 None:intergenic 30.0%
! AAAAGGCTTAATAGCAGTTT+TGG + chr4_4:1880566-1880585 Msa0663210:intron 30.0%
AACATTATAGCCAAATCTAG+GGG - chr4_4:1880652-1880671 None:intergenic 30.0%
CAACATTATAGCCAAATCTA+GGG - chr4_4:1880653-1880672 None:intergenic 30.0%
TCAACATTATAGCCAAATCT+AGG - chr4_4:1880654-1880673 None:intergenic 30.0%
! TAGATGATGACGATAATGAT+GGG + chr4_4:1880682-1880701 Msa0663210:CDS 30.0%
!! AATTATAGTGCTGGTGATAA+AGG + chr4_4:1880804-1880823 Msa0663210:CDS 30.0%
! TAAGATGATGATGTAGTTGT+TGG + chr4_4:1880980-1880999 Msa0663210:intron 30.0%
CATTAACTGTTGAAGGAATA+AGG + chr4_4:1881026-1881045 Msa0663210:intron 30.0%
TATAAGTACGGTAAGTGTAA+AGG + chr4_4:1881091-1881110 Msa0663210:intron 30.0%
!!! AGTGTAAAGGTTTTGTTGTT+AGG + chr4_4:1881104-1881123 Msa0663210:CDS 30.0%
AGCATTTATCAAGGTTAGAT+AGG + chr4_4:1881209-1881228 Msa0663210:intron 30.0%
! ACAACATATCTACCCTTTTT+GGG - chr4_4:1881298-1881317 None:intergenic 30.0%
!!! TGTTGTGTCTATTTTTGAAG+AGG + chr4_4:1881312-1881331 Msa0663210:CDS 30.0%
!!! GTTGTGTCTATTTTTGAAGA+GGG + chr4_4:1881313-1881332 Msa0663210:CDS 30.0%
AATCTGTGCTTTATATACCT+CGG - chr4_4:1881401-1881420 None:intergenic 30.0%
GTATATAAAGCACAGATTGA+TGG + chr4_4:1881403-1881422 Msa0663210:CDS 30.0%
! TTGTCATATAATGGGATACA+TGG + chr4_4:1881450-1881469 Msa0663210:CDS 30.0%
! AAAAATGCGTGCTGTTATTA+AGG + chr4_4:1881540-1881559 Msa0663210:CDS 30.0%
GAATATTCACAAAAGGAATG+TGG - chr4_4:1881619-1881638 None:intergenic 30.0%
!! GACGTTTGAAATGTCTATTT+TGG + chr4_4:1881653-1881672 Msa0663210:CDS 30.0%
!! AGATCAGATTATTTCTGCTT+TGG + chr4_4:1881691-1881710 Msa0663210:CDS 30.0%
! GTATTTGTTCTTGTTATACG+TGG - chr4_4:1881737-1881756 None:intergenic 30.0%
CAAATATAACTGTTTGTGAG+TGG - chr4_4:1881795-1881814 None:intergenic 30.0%
CACTCACAAACAGTTATATT+TGG + chr4_4:1881793-1881812 Msa0663210:CDS 30.0%
!!! GACTAGTTTTCTAGATTGTA+TGG + chr4_4:1881864-1881883 Msa0663210:CDS 30.0%
!!! TGTCAAGAATTCAGCTTTTT+TGG + chr4_4:1882246-1882265 Msa0663210:intron 30.0%
!!! AAGAATTCAGCTTTTTTGGA+AGG + chr4_4:1882250-1882269 Msa0663210:intron 30.0%
! AATGTACTCTAATTTTACGG+AGG + chr4_4:1882286-1882305 Msa0663210:intron 30.0%
! AGGATGAATTTGAAGAGTTT+TGG + chr4_4:1882306-1882325 Msa0663210:intron 30.0%
! GGATGAATTTGAAGAGTTTT+GGG + chr4_4:1882307-1882326 Msa0663210:intron 30.0%
! GATGAATTTGAAGAGTTTTG+GGG + chr4_4:1882308-1882327 Msa0663210:intron 30.0%
!! ATGAATTTGAAGAGTTTTGG+GGG + chr4_4:1882309-1882328 Msa0663210:intron 30.0%
!!! TCATATGTTTTGGTATCCTA+TGG - chr4_4:1882369-1882388 None:intergenic 30.0%
CATATGAGAACAAAGAATTG+TGG + chr4_4:1882382-1882401 Msa0663210:CDS 30.0%
AAGAGTTATGTTAGGAAGAA+AGG + chr4_4:1882483-1882502 Msa0663210:CDS 30.0%
GTGAAAGAAGAGATTATGAA+AGG + chr4_4:1882675-1882694 Msa0663210:CDS 30.0%
GAAGTTGACAAAATATCTTG+AGG + chr4_4:1882749-1882768 Msa0663210:CDS 30.0%
TTGACAAAATATCTTGAGGA+AGG + chr4_4:1882753-1882772 Msa0663210:CDS 30.0%
!! AATGTTTGATTTTGTTGCGT+TGG + chr4_4:1882908-1882927 Msa0663210:CDS 30.0%
GGAAGTAGATTCAAAATTGA+TGG + chr4_4:1882975-1882994 Msa0663210:CDS 30.0%
GACTAAATAGATTTAGGAAG+AGG + chr4_4:1883249-1883268 Msa0663210:intron 30.0%
! CAGAAAAACAATCTAAGGTA+AGG + chr4_4:1883409-1883428 Msa0663210:intron 30.0%
! GATTGCATCTAACATGTTTT+AGG + chr4_4:1883473-1883492 Msa0663210:intron 30.0%
! TTGAGTGAGAATTGATGATT+AGG + chr4_4:1883527-1883546 Msa0663210:intron 30.0%
AAAACCGTTGAATTGATGTA+AGG + chr4_4:1883556-1883575 Msa0663210:intron 30.0%
AAACCGTTGAATTGATGTAA+GGG + chr4_4:1883557-1883576 Msa0663210:intron 30.0%
TGAGTCTATATTCACCATAA+GGG + chr4_4:1883581-1883600 Msa0663210:intron 30.0%
ATATGTTCATACAACCCTTA+TGG - chr4_4:1883598-1883617 None:intergenic 30.0%
ATGAACATATGAGTAGTGAA+TGG + chr4_4:1883608-1883627 Msa0663210:intron 30.0%
TCAAAAGATCATGAAAGCAA+TGG - chr4_4:1883644-1883663 None:intergenic 30.0%
TTGAATCGTGATGATATCAT+AGG + chr4_4:1883727-1883746 Msa0663210:intron 30.0%
TATCTAATTTCCTCGATACA+TGG - chr4_4:1884041-1884060 None:intergenic 30.0%
AACTAGGAATGAGAGAATAT+AGG + chr4_4:1884171-1884190 Msa0663210:intron 30.0%
TGAGAGAATATAGGTACAAT+AGG + chr4_4:1884180-1884199 Msa0663210:intron 30.0%
GGAATATTACGATGTTAAGA+TGG + chr4_4:1884745-1884764 Msa0663210:intron 30.0%
CATCTTTAAATGAGTATGCA+TGG - chr4_4:1885003-1885022 None:intergenic 30.0%
TGCATACTCATTTAAAGATG+AGG + chr4_4:1885003-1885022 Msa0663210:intron 30.0%
GCATACTCATTTAAAGATGA+GGG + chr4_4:1885004-1885023 Msa0663210:intron 30.0%
! GTGAGGTGAACATTTTCAAA+TGG + chr4_4:1879968-1879987 Msa0663210:intron 35.0%
TGCTAATCTATAAGCCCAAT+CGG + chr4_4:1880060-1880079 Msa0663210:intron 35.0%
! ATAGCTCATTCCTTTTGTGA+AGG - chr4_4:1880240-1880259 None:intergenic 35.0%
ACAAACGTATCACAGATCTT+TGG + chr4_4:1880353-1880372 Msa0663210:intron 35.0%
CTTCAAACAGTGAACACTAA+TGG + chr4_4:1880379-1880398 Msa0663210:intron 35.0%
TCGCAACTTCTTCAAACATA+GGG - chr4_4:1880594-1880613 None:intergenic 35.0%
ATCGCAACTTCTTCAAACAT+AGG - chr4_4:1880595-1880614 None:intergenic 35.0%
! GTTTGAAGAAGTTGCGATTT+TGG + chr4_4:1880597-1880616 Msa0663210:intron 35.0%
ACATTATAGCCAAATCTAGG+GGG - chr4_4:1880651-1880670 None:intergenic 35.0%
! GTAGATGATGACGATAATGA+TGG + chr4_4:1880681-1880700 Msa0663210:CDS 35.0%
GCTGATAGATATGATGAAAC+TGG + chr4_4:1880747-1880766 Msa0663210:CDS 35.0%
TGTTCTGGTAATTATAGTGC+TGG + chr4_4:1880795-1880814 Msa0663210:CDS 35.0%
AAGTGATGTGATGAAAGTCA+AGG + chr4_4:1880839-1880858 Msa0663210:CDS 35.0%
! AATGAAAGTCATGGTAGTGA+AGG + chr4_4:1880941-1880960 Msa0663210:CDS 35.0%
TGTTGAAGGAATAAGGGAAA+TGG + chr4_4:1881033-1881052 Msa0663210:intron 35.0%
TTAACAGTGAGATTGTCATG+AGG + chr4_4:1881149-1881168 Msa0663210:CDS 35.0%
!! GAGAGAAGAAGCATTTATCA+AGG + chr4_4:1881200-1881219 Msa0663210:CDS 35.0%
! CACAACATATCTACCCTTTT+TGG - chr4_4:1881299-1881318 None:intergenic 35.0%
TGCATTTACACCCTGTTTAT+CGG + chr4_4:1881368-1881387 Msa0663210:CDS 35.0%
! CGGATATTTTCCGATAAACA+GGG - chr4_4:1881381-1881400 None:intergenic 35.0%
! TCGGATATTTTCCGATAAAC+AGG - chr4_4:1881382-1881401 None:intergenic 35.0%
TGTTTATCGGAAAATATCCG+AGG + chr4_4:1881381-1881400 Msa0663210:CDS 35.0%
! TCATATAATGGGATACATGG+TGG + chr4_4:1881453-1881472 Msa0663210:CDS 35.0%
AGTGGCAGAATATTCACAAA+AGG - chr4_4:1881626-1881645 None:intergenic 35.0%
!! TTATTTCTGCTTTGGCAATG+TGG + chr4_4:1881699-1881718 Msa0663210:CDS 35.0%
!! AGTTATATTTGGTGCTGCAT+TGG + chr4_4:1881804-1881823 Msa0663210:CDS 35.0%
AATCTGTGTGAAATGAGCTA+AGG + chr4_4:1882146-1882165 Msa0663210:intron 35.0%
ATCTGTGTGAAATGAGCTAA+GGG + chr4_4:1882147-1882166 Msa0663210:intron 35.0%
AGCTAAGGGGTCAAATAAAT+TGG + chr4_4:1882161-1882180 Msa0663210:intron 35.0%
GCTAAGGGGTCAAATAAATT+GGG + chr4_4:1882162-1882181 Msa0663210:intron 35.0%
!!! TGAATTTGAAGAGTTTTGGG+GGG + chr4_4:1882310-1882329 Msa0663210:intron 35.0%
! TATCCTATGGATTGTTCTCA+AGG - chr4_4:1882356-1882375 None:intergenic 35.0%
!! AATTTTGATGAGGCAATGAG+AGG + chr4_4:1882528-1882547 Msa0663210:CDS 35.0%
TGAGGCTACTGAAATCTATA+CGG + chr4_4:1882635-1882654 Msa0663210:CDS 35.0%
GTGAAGGAAAAAGAAGTGAA+TGG + chr4_4:1882711-1882730 Msa0663210:CDS 35.0%
CAAAAAAACATATGGGAGCA+TGG - chr4_4:1882855-1882874 None:intergenic 35.0%
CGCAACAAAATCAAACATTC+TGG - chr4_4:1882907-1882926 None:intergenic 35.0%
TTTGTTGCGTTGGATGAAAA+AGG + chr4_4:1882918-1882937 Msa0663210:CDS 35.0%
TGGATGAAAAAGGTGAAGAT+TGG + chr4_4:1882928-1882947 Msa0663210:CDS 35.0%
!! GAAGATTGGTTTCTTGAATG+TGG + chr4_4:1882942-1882961 Msa0663210:CDS 35.0%
! TTCTTGAATGTGGACTATTG+TGG + chr4_4:1882952-1882971 Msa0663210:CDS 35.0%
! TCTTGAATGTGGACTATTGT+GGG + chr4_4:1882953-1882972 Msa0663210:CDS 35.0%
!!! AAACTGCTTTTTGGAGAAAG+AGG + chr4_4:1883321-1883340 Msa0663210:intron 35.0%
AACCGTTGAATTGATGTAAG+GGG + chr4_4:1883558-1883577 Msa0663210:intron 35.0%
GTGAGTCTATATTCACCATA+AGG + chr4_4:1883580-1883599 Msa0663210:intron 35.0%
TGTACATCGATGAGTCTATA+AGG + chr4_4:1883846-1883865 Msa0663210:intron 35.0%
!!! GATACATGGTTTTTGGTTAC+TGG - chr4_4:1883882-1883901 None:intergenic 35.0%
TTCGGTTACTCATGGATATT+AGG - chr4_4:1884017-1884036 None:intergenic 35.0%
ATTTCCTCGATACATGGTTT+CGG - chr4_4:1884035-1884054 None:intergenic 35.0%
CAAGTGCTACACGTAATTAT+AGG + chr4_4:1884368-1884387 Msa0663210:intron 35.0%
TATTCTCGGTCTTAAGAGTG+AGG + chr4_4:1879951-1879970 Msa0663210:intron 40.0%
! GACATCTATCAACGCTGTTT+TGG - chr4_4:1880281-1880300 None:intergenic 40.0%
!! CAGCGTTGATAGATGTCAAT+TGG + chr4_4:1880284-1880303 Msa0663210:intron 40.0%
GCAACTTCTTCAAACATAGG+GGG - chr4_4:1880592-1880611 None:intergenic 40.0%
CGCAACTTCTTCAAACATAG+GGG - chr4_4:1880593-1880612 None:intergenic 40.0%
GGAGACAATGAAAGTGATGA+TGG + chr4_4:1880768-1880787 Msa0663210:CDS 40.0%
!! AGTGATGATGGTGATTGTTC+TGG + chr4_4:1880780-1880799 Msa0663210:CDS 40.0%
GGTGATAAAGGTGAAGATGA+TGG + chr4_4:1880816-1880835 Msa0663210:CDS 40.0%
GATGAAAGTCAAGGTGATGA+AGG + chr4_4:1880848-1880867 Msa0663210:CDS 40.0%
AGTGAAGGTGATGAAAGTGA+AGG + chr4_4:1880884-1880903 Msa0663210:CDS 40.0%
! GGTCATGGTAATGAAAGTCA+TGG + chr4_4:1880932-1880951 Msa0663210:CDS 40.0%
! TGATGATGTAGTTGTTGGTG+AGG + chr4_4:1880985-1881004 Msa0663210:intron 40.0%
! TGTAGTTGTTGGTGAGGAAA+TGG + chr4_4:1880991-1881010 Msa0663210:intron 40.0%
! TTGTTGGTGAGGAAATGGTA+AGG + chr4_4:1880996-1881015 Msa0663210:intron 40.0%
CAGTATGTATGCAACAAGCA+GGG + chr4_4:1881172-1881191 Msa0663210:CDS 40.0%
AGTATGTATGCAACAAGCAG+GGG + chr4_4:1881173-1881192 Msa0663210:CDS 40.0%
!! TTTTGGGTCTGTAGTGAACA+CGG - chr4_4:1881282-1881301 None:intergenic 40.0%
TGTTCACTACAGACCCAAAA+AGG + chr4_4:1881282-1881301 Msa0663210:intron 40.0%
GTTCACTACAGACCCAAAAA+GGG + chr4_4:1881283-1881302 Msa0663210:intron 40.0%
!! TGTAAATGCACAGCATTGGT+TGG - chr4_4:1881358-1881377 None:intergenic 40.0%
! ATGCGTGCTGTTATTAAGGA+TGG + chr4_4:1881544-1881563 Msa0663210:CDS 40.0%
AAAGGAATGTGGATCAGTTG+AGG - chr4_4:1881608-1881627 None:intergenic 40.0%
GAATATTCTGCCACTGATGA+CGG + chr4_4:1881631-1881650 Msa0663210:CDS 40.0%
GAACAAATACCACTATCCGT+TGG + chr4_4:1881747-1881766 Msa0663210:CDS 40.0%
ACAAAATCACCAACGGATAG+TGG - chr4_4:1881759-1881778 None:intergenic 40.0%
!!! TATCCGTTGGTGATTTTGTC+TGG + chr4_4:1881760-1881779 Msa0663210:CDS 40.0%
TAGCCAGACAAAATCACCAA+CGG - chr4_4:1881766-1881785 None:intergenic 40.0%
! CCATCTGTTACAACTGCTTT+TGG - chr4_4:1881901-1881920 None:intergenic 40.0%
CCAAAAGCAGTTGTAACAGA+TGG + chr4_4:1881898-1881917 Msa0663210:CDS 40.0%
!! AGATGGTGATGGTTCTATGA+GGG + chr4_4:1881915-1881934 Msa0663210:CDS 40.0%
AGAAAACGGGTCAGATATTC+CGG - chr4_4:1881979-1881998 None:intergenic 40.0%
TCTGTGTGAAATGAGCTAAG+GGG + chr4_4:1882148-1882167 Msa0663210:intron 40.0%
AGGGGTCAAATAAATTGGGA+CGG + chr4_4:1882166-1882185 Msa0663210:intron 40.0%
GTCAAATAAATTGGGACGGA+GGG + chr4_4:1882170-1882189 Msa0663210:intron 40.0%
GCATCTGAACAAGAATGCTA+TGG + chr4_4:1882219-1882238 Msa0663210:intron 40.0%
!!! GAATTTGAAGAGTTTTGGGG+GGG + chr4_4:1882311-1882330 Msa0663210:intron 40.0%
TTGCCTTGAGAACAATCCAT+AGG + chr4_4:1882350-1882369 Msa0663210:intron 40.0%
TGCAGGAAATTTGAATCTCG+AGG + chr4_4:1882825-1882844 Msa0663210:intron 40.0%
GCAGGAAATTTGAATCTCGA+GGG + chr4_4:1882826-1882845 Msa0663210:intron 40.0%
CAGGAAATTTGAATCTCGAG+GGG + chr4_4:1882827-1882846 Msa0663210:intron 40.0%
! CTTGAATGTGGACTATTGTG+GGG + chr4_4:1882954-1882973 Msa0663210:CDS 40.0%
TTGATGGAGATTGCTCGATA+TGG + chr4_4:1882991-1883010 Msa0663210:CDS 40.0%
TTGCAGGGAATTGTCCAAAA+AGG + chr4_4:1883041-1883060 Msa0663210:intron 40.0%
TGCAGGGAATTGTCCAAAAA+GGG + chr4_4:1883042-1883061 Msa0663210:intron 40.0%
TTTGGAGAAAGAGGAGAAAG+AGG + chr4_4:1883330-1883349 Msa0663210:intron 40.0%
CACCCCTTACATCAATTCAA+CGG - chr4_4:1883563-1883582 None:intergenic 40.0%
TACATGGTTTCGGTTACTCA+TGG - chr4_4:1884025-1884044 None:intergenic 40.0%
! GACGATAATGATGGGAGTCA+TGG + chr4_4:1880690-1880709 Msa0663210:CDS 45.0%
AGTCAAGGTGATGAAGGTGA+AGG + chr4_4:1880854-1880873 Msa0663210:CDS 45.0%
GGTGAAGGTGATGAAAGTGA+AGG + chr4_4:1880869-1880888 Msa0663210:CDS 45.0%
GGTGATGAAAGTGAAGGTCA+TGG + chr4_4:1880890-1880909 Msa0663210:CDS 45.0%
GAAAGTGAAGGTCATGGTGA+AGG + chr4_4:1880896-1880915 Msa0663210:CDS 45.0%
GGTGAAGGTGATGAAAGTGA+AGG + chr4_4:1880869-1880888 Msa0663210:CDS 45.0%
GGTGATGAAAGTGAAGGTCA+TGG + chr4_4:1880890-1880909 Msa0663210:CDS 45.0%
GCAGTATGTATGCAACAAGC+AGG + chr4_4:1881171-1881190 Msa0663210:CDS 45.0%
! CATTGGTTGGAGTAGGTTCA+TGG - chr4_4:1881345-1881364 None:intergenic 45.0%
AGGGTGTAAATGCACAGCAT+TGG - chr4_4:1881362-1881381 None:intergenic 45.0%
TTCTTAGTGAACCCAACACC+AGG - chr4_4:1881496-1881515 None:intergenic 45.0%
TTTCAAACGTCCGTCATCAG+TGG - chr4_4:1881644-1881663 None:intergenic 45.0%
!! ATTTGGTGCTGCATTGGTGA+TGG + chr4_4:1881810-1881829 Msa0663210:CDS 45.0%
GCAGTTGTAACAGATGGTGA+TGG + chr4_4:1881904-1881923 Msa0663210:CDS 45.0%
!! CAGATGGTGATGGTTCTATG+AGG + chr4_4:1881914-1881933 Msa0663210:CDS 45.0%
TTCTATGAGGGAGGCGATAA+AGG + chr4_4:1881927-1881946 Msa0663210:CDS 45.0%
GAAAACGGGTCAGATATTCC+GGG - chr4_4:1881978-1881997 None:intergenic 45.0%
GGTCAAATAAATTGGGACGG+AGG + chr4_4:1882169-1882188 Msa0663210:intron 45.0%
TACCTGCGTGACGATTTCTT+TGG + chr4_4:1882414-1882433 Msa0663210:CDS 45.0%
TCTGCGTTGTCTTGAACATG+AGG + chr4_4:1882617-1882636 Msa0663210:CDS 45.0%
AGTAGCGTTCTTCGTTCCTA+GGG - chr4_4:1883381-1883400 None:intergenic 45.0%
AAGTAGCGTTCTTCGTTCCT+AGG - chr4_4:1883382-1883401 None:intergenic 45.0%
GTAACCGAAACCATGTATCG+AGG + chr4_4:1884028-1884047 Msa0663210:intron 45.0%
! CTTTTGCTCAACCACAACGA+TGG + chr4_4:1885041-1885060 Msa0663210:CDS 45.0%
! CTTTTGCTCAACTACGACGA+TGG + chr4_4:1885066-1885085 Msa0663210:CDS 45.0%
! TTTTGCTCAACCAGAGACGA+GGG + chr4_4:1885092-1885111 Msa0663210:CDS 45.0%
!! AAATTATTAATTAAACAAAA+AGG - chr4_4:1879742-1879761 None:intergenic 5.0%
!! CGATTTTGGCCCCCTAGATT+TGG + chr4_4:1880639-1880658 Msa0663210:intron 50.0%
! CTCGTACAAAGTGTCCAGCT+AGG + chr4_4:1881254-1881273 Msa0663210:intron 50.0%
!! TGCACAGCATTGGTTGGAGT+AGG - chr4_4:1881352-1881371 None:intergenic 50.0%
GGATACATGGTGGCTCAGAA+GGG + chr4_4:1881463-1881482 Msa0663210:CDS 50.0%
AAGGGTGGATATCCTGGTGT+TGG + chr4_4:1881481-1881500 Msa0663210:CDS 50.0%
AGGGTGGATATCCTGGTGTT+GGG + chr4_4:1881482-1881501 Msa0663210:CDS 50.0%
!! TGGTGATGGTTCTATGAGGG+AGG + chr4_4:1881918-1881937 Msa0663210:CDS 50.0%
TATGAGGGAGGCGATAAAGG+CGG + chr4_4:1881930-1881949 Msa0663210:CDS 50.0%
CGTGTCATCGTCTATGTGCT+TGG + chr4_4:1882197-1882216 Msa0663210:intron 50.0%
CACCAAAGAAATCGTCACGC+AGG - chr4_4:1882419-1882438 None:intergenic 50.0%
CTGCGTGACGATTTCTTTGG+TGG + chr4_4:1882417-1882436 Msa0663210:CDS 50.0%
CAGCACAGGGGATGAAAACT+TGG - chr4_4:1882589-1882608 None:intergenic 50.0%
CAGATGAGTTGTCAGCACAG+GGG - chr4_4:1882601-1882620 None:intergenic 50.0%
GCAGATGAGTTGTCAGCACA+GGG - chr4_4:1882602-1882621 None:intergenic 50.0%
! AGGTGTTGCACTGAGTGTGA+AGG + chr4_4:1882695-1882714 Msa0663210:CDS 50.0%
CAGCAATTCAGTGTTCGTGC+AGG + chr4_4:1882808-1882827 Msa0663210:intron 50.0%
! GGGCGTTACACTACCCTTTT+TGG - chr4_4:1883058-1883077 None:intergenic 50.0%
AGAGAGAGAGAGAGAACCCT+AGG + chr4_4:1883362-1883381 Msa0663210:intron 50.0%
GTGGTTGAGCAAAAGCTCCA+GGG - chr4_4:1885036-1885055 None:intergenic 50.0%
TGTGGTTGAGCAAAAGCTCC+AGG - chr4_4:1885037-1885056 None:intergenic 50.0%
GAGCAAAAGCTCCATCGTTG+TGG - chr4_4:1885055-1885074 None:intergenic 50.0%
! CTTTTGCTCAACCAGAGACG+AGG + chr4_4:1885091-1885110 Msa0663210:CDS 50.0%
TAGTGAACACGGAGCCTAGC+TGG - chr4_4:1881271-1881290 None:intergenic 55.0%
GGGATACATGGTGGCTCAGA+AGG + chr4_4:1881462-1881481 Msa0663210:CDS 55.0%
TACATGGTGGCTCAGAAGGG+TGG + chr4_4:1881466-1881485 Msa0663210:CDS 55.0%
GCTCAGAAGGGTGGATATCC+TGG + chr4_4:1881475-1881494 Msa0663210:CDS 55.0%
GTCAGATATTCCGGGACGGA+GGG - chr4_4:1881970-1881989 None:intergenic 55.0%
ACGGGTCAGATATTCCGGGA+CGG - chr4_4:1881974-1881993 None:intergenic 55.0%
!!! GAAGAGTTTTGGGGGGGACT+TGG + chr4_4:1882317-1882336 Msa0663210:intron 55.0%
!!! TTTTGGGGGGGACTTGGTGA+GGG + chr4_4:1882323-1882342 Msa0663210:intron 55.0%
CGCAGATGAGTTGTCAGCAC+AGG - chr4_4:1882603-1882622 None:intergenic 55.0%
AAAGATGAGGGCTCATGCCC+TGG + chr4_4:1885016-1885035 Msa0663210:intron 55.0%
ACCAAGTACTCCCTCCGTCC+CGG + chr4_4:1881957-1881976 Msa0663210:intron 60.0%
GGTCAGATATTCCGGGACGG+AGG - chr4_4:1881971-1881990 None:intergenic 60.0%
!!! GTTTTGGGGGGGACTTGGTG+AGG + chr4_4:1882322-1882341 Msa0663210:intron 60.0%
!! TCCGGGACGGAGGGAGTACT+TGG - chr4_4:1881961-1881980 None:intergenic 65.0%
AGGGCATGAGCCCTCGTCTC+TGG - chr4_4:1885105-1885124 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 1879567 1885126 1879567 ID=Msa0663210;Name=Msa0663210
chr4_4 mRNA 1879567 1885126 1879567 ID=Msa0663210-mRNA-1;Parent=Msa0663210;Name=Msa0663210-mRNA-1;_AED=0.20;_eAED=0.27;_QI=0|0|0|0.57|1|1|7|0|570
chr4_4 exon 1879567 1879569 1879567 ID=Msa0663210-mRNA-1:exon:514;Parent=Msa0663210-mRNA-1
chr4_4 exon 1880678 1880962 1880678 ID=Msa0663210-mRNA-1:exon:515;Parent=Msa0663210-mRNA-1
chr4_4 exon 1881097 1881221 1881097 ID=Msa0663210-mRNA-1:exon:516;Parent=Msa0663210-mRNA-1
chr4_4 exon 1881294 1881951 1881294 ID=Msa0663210-mRNA-1:exon:517;Parent=Msa0663210-mRNA-1
chr4_4 exon 1882372 1882776 1882372 ID=Msa0663210-mRNA-1:exon:518;Parent=Msa0663210-mRNA-1
chr4_4 exon 1882883 1883012 1882883 ID=Msa0663210-mRNA-1:exon:519;Parent=Msa0663210-mRNA-1
chr4_4 exon 1885020 1885126 1885020 ID=Msa0663210-mRNA-1:exon:520;Parent=Msa0663210-mRNA-1
chr4_4 CDS 1879567 1879569 1879567 ID=Msa0663210-mRNA-1:cds;Parent=Msa0663210-mRNA-1
chr4_4 CDS 1880678 1880962 1880678 ID=Msa0663210-mRNA-1:cds;Parent=Msa0663210-mRNA-1
chr4_4 CDS 1881097 1881221 1881097 ID=Msa0663210-mRNA-1:cds;Parent=Msa0663210-mRNA-1
chr4_4 CDS 1881294 1881951 1881294 ID=Msa0663210-mRNA-1:cds;Parent=Msa0663210-mRNA-1
chr4_4 CDS 1882372 1882776 1882372 ID=Msa0663210-mRNA-1:cds;Parent=Msa0663210-mRNA-1
chr4_4 CDS 1882883 1883012 1882883 ID=Msa0663210-mRNA-1:cds;Parent=Msa0663210-mRNA-1
chr4_4 CDS 1885020 1885126 1885020 ID=Msa0663210-mRNA-1:cds;Parent=Msa0663210-mRNA-1
Gene Sequence

>Msa0663210

ATGAATGTAGATGATGACGATAATGATGGGAGTCATGGTAATTTTACGAAGAATACTCAAGGGAATACATGTGCTGATAGATATGATGAAACTGGAGACAATGAAAGTGATGATGGTGATTGTTCTGGTAATTATAGTGCTGGTGATAAAGGTGAAGATGATGGAAGTGATGTGATGAAAGTCAAGGTGATGAAGGTGAAGGTGATGAAAGTGAAGGTGATGAAAGTGAAGGTCATGGTGAAGGTGATGAAAGTGAAGGTCATGGTAATGAAAGTCATGGTAGTGAAGTACGGTAAGTGTAAAGGTTTTGTTGTTAGGAAGAGTTATATTAGGCACAATGTTAACAGTGAGATTGTCATGAGGCAGTATGTATGCAACAAGCAGGGGTTCAGAGAGAAGAAGCATTTATCAAGACCCAAAAAGGGTAGATATGTTGTGTCTATTTTTGAAGAGGGTCACAACCATGAACCTACTCCAACCAATGCTGTGCATTTACACCCTGTTTATCGGAAAATATCCGAGGTATATAAAGCACAGATTGATGGTCTTCAGTCACACAGAATAATAACTTGTCATATAATGGGATACATGGTGGCTCAGAAGGGTGGATATCCTGGTGTTGGGTTCACTAAGAAAGATCTGTACAATTACTTTGACAAAAAAATGCGTGCTGTTATTAAGGATGGTGATGTTTCAGCTGCTTTAAACTATCTGAATGTTAAGTCCTCAACTGATCCACATTCCTTTTGTGAATATTCTGCCACTGATGACGGACGTTTGAAATGTCTATTTTGGGCAGATGACACAAGCAGATCAGATTATTTCTGCTTTGGCAATGTGGTTGCATTTGACACCACGTATAACAAGAACAAATACCACTATCCGTTGGTGATTTTGTCTGGCTACAACAACCACTCACAAACAGTTATATTTGGTGCTGCATTGGTGATGGATGAAACAATAGAAACTTATATGTGGGTGTTGACTAGTTTTCTAGATTGTATGGGAAAAAAACTTCCAAAAGCAGTTGTAACAGATGGTGATGGTTCTATGAGGGAGGCGATAAAGGCGGATACCAAAACATATGAGAACAAAGAATTGTGGGCAACTGCATACCTGCGTGACGATTTCTTTGGTGGTATAAGAACTACGTCTCAATGTGAGCCTGTTAATAAAATCATAAAGAGTTATGTTAGGAAGAAAGGAAGCATCTTTGAATTTTTGCATAATTTTGATGAGGCAATGAGAGGCTACAGAAATAATGAACTTGTAGATGATTTTAAATCCAAGTTTTCATCCCCTGTGCTGACAACTCATCTGCGTTGTCTTGAACATGAGGCTACTGAAATCTATACGGCAGAGATCTTTCGAGAAGTGAAAGAAGAGATTATGAAAGGTGTTGCACTGAGTGTGAAGGAAAAAGAAGTGAATGGTGACTTGAGAATAATGAAGTTGACAAAATATCTTGAGGAAGGTGAAGAACGTGCTGAACACATTCCAGAATGTTTGATTTTGTTGCGTTGGATGAAAAAGGTGAAGATTGGTTTCTTGAATGTGGACTATTGTGGGGAAGTAGATTCAAAATTGATGGAGATTGCTCGATATGATGAGGGCTCATGCCCTGGAGCTTTTGCTCAACCACAACGATGGAGCTTTTGCTCAACTACGACGATGGAGCTTTTGCTCAACCAGAGACGAGGGCTCATGCCCTAG
Protein sequence

>Msa0663210

MNVDDDDNDGSHGNFTKNTQGNTCADRYDETGDNESDDGDCSGNYSAGDKGEDDGSDVMKVKVMKVKVMKVKVMKVKVMVKVMKVKVMVMKVMVVKYGKCKGFVVRKSYIRHNVNSEIVMRQYVCNKQGFREKKHLSRPKKGRYVVSIFEEGHNHEPTPTNAVHLHPVYRKISEVYKAQIDGLQSHRIITCHIMGYMVAQKGGYPGVGFTKKDLYNYFDKKMRAVIKDGDVSAALNYLNVKSSTDPHSFCEYSATDDGRLKCLFWADDTSRSDYFCFGNVVAFDTTYNKNKYHYPLVILSGYNNHSQTVIFGAALVMDETIETYMWVLTSFLDCMGKKLPKAVVTDGDGSMREAIKADTKTYENKELWATAYLRDDFFGGIRTTSQCEPVNKIIKSYVRKKGSIFEFLHNFDEAMRGYRNNELVDDFKSKFSSPVLTTHLRCLEHEATEIYTAEIFREVKEEIMKGVALSVKEKEVNGDLRIMKLTKYLEEGEERAEHIPECLILLRWMKKVKIGFLNVDYCGEVDSKLMEIARYDEGSCPGAFAQPQRWSFCSTTTMELLLNQRRGLMP*