Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663770 | XP_039683887.1 | 84.800 | 125 | 19 | 0 | 1 | 125 | 1 | 125 | 1.87e-65 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663770 | A0A445I0S5 | 60.256 | 78 | 28 | 1 | 48 | 125 | 46 | 120 | 8.22e-20 | 95.9 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0663770 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663770 | MtrunA17_Chr5g0441581 | 52.500 | 80 | 38 | 0 | 46 | 125 | 30 | 109 | 4.20e-21 | 89.0 |
| Msa0663770 | MtrunA17_Chr6g0451441 | 44.444 | 81 | 43 | 1 | 45 | 125 | 84 | 162 | 1.04e-16 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 43 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGTTGACGTTTCGGATTC+CGG | 0.201943 | 4_4:+2651600 | Msa0663770:CDS |
| ACATTTATAGAGCTGGGTTA+TGG | 0.298151 | 4_4:-2652408 | None:intergenic |
| GATCGCAAACCCTTGTTTCA+TGG | 0.299904 | 4_4:-2651727 | None:intergenic |
| TGCTGCTCGTGTTGACGTTT+CGG | 0.340675 | 4_4:+2651593 | Msa0663770:CDS |
| CATTTATAGAGCTGGGTTAT+GGG | 0.342663 | 4_4:-2652407 | None:intergenic |
| GTGTTGACGTTTCGGATTCC+GGG | 0.344560 | 4_4:+2651601 | Msa0663770:CDS |
| CCGCCAGCTAGCTCTCCGTC+AGG | 0.404961 | 4_4:-2651570 | None:intergenic |
| GAGGAACATGACAGGCTGTT+TGG | 0.406605 | 4_4:-2652365 | None:intergenic |
| TCTCCGTCAGGGGCTAATAA+AGG | 0.411181 | 4_4:-2651558 | None:intergenic |
| AAAGGATGATCGATCAATAT+AGG | 0.415391 | 4_4:-2651540 | None:intergenic |
| AGGTGTTACATTTATAGAGC+TGG | 0.428606 | 4_4:-2652415 | None:intergenic |
| TTGGTGGTATGTTTGATTCA+TGG | 0.433399 | 4_4:-2651824 | None:intergenic |
| ACATGACAGGCTGTTTGGCT+TGG | 0.456111 | 4_4:-2652360 | None:intergenic |
| AAAACTAGAAACTCTAAGAA+AGG | 0.460549 | 4_4:+2651750 | Msa0663770:CDS |
| CCAACTCATCACAGCCTGTC+AGG | 0.471765 | 4_4:+2652329 | Msa0663770:CDS |
| GCCCCTGACGGAGAGCTAGC+TGG | 0.477996 | 4_4:+2651567 | Msa0663770:CDS |
| GAGCAATCAAGTTTCTTCGT+TGG | 0.480101 | 4_4:-2651861 | None:intergenic |
| ATTTGTTGTTTCAAAGGTCC+CGG | 0.482096 | 4_4:-2651619 | None:intergenic |
| CACTTATGCTCGATGGCTGA+TGG | 0.482201 | 4_4:+2651513 | None:intergenic |
| CGCCAGCTAGCTCTCCGTCA+GGG | 0.486041 | 4_4:-2651569 | None:intergenic |
| GGTGTTACATTTATAGAGCT+GGG | 0.487313 | 4_4:-2652414 | None:intergenic |
| CTTGTTTCATGGCATATTCA+CGG | 0.492232 | 4_4:-2651716 | None:intergenic |
| CGTGAATATGCCATGAAACA+AGG | 0.498225 | 4_4:+2651717 | Msa0663770:CDS |
| TTAAAAGACATACCGATAGT+AGG | 0.501742 | 4_4:-2651666 | None:intergenic |
| GTTGGATTCGTCTTCAAAGT+TGG | 0.502236 | 4_4:-2651843 | None:intergenic |
| GACAACATTTGTTGTTTCAA+AGG | 0.508809 | 4_4:-2651625 | None:intergenic |
| AAACTAGAAACTCTAAGAAA+GGG | 0.523644 | 4_4:+2651751 | Msa0663770:CDS |
| CCTGACAGGCTGTGATGAGT+TGG | 0.524283 | 4_4:-2652329 | None:intergenic |
| GGATTCGTCTTCAAAGTTGG+TGG | 0.530111 | 4_4:-2651840 | None:intergenic |
| GCTTGGAGAGGAAACCTGAC+AGG | 0.536002 | 4_4:-2652343 | None:intergenic |
| TGATTGCTCAGCTAAGATAA+CGG | 0.550952 | 4_4:+2651875 | Msa0663770:CDS |
| GATAAATTCACGCCTACTAT+CGG | 0.551302 | 4_4:+2651654 | Msa0663770:CDS |
| ATTCTAACTTGTGCAAGAGA+AGG | 0.552020 | 4_4:+2651798 | Msa0663770:CDS |
| GCCAGCTAGCTCTCCGTCAG+GGG | 0.566313 | 4_4:-2651568 | None:intergenic |
| CTGACAGGCTGTGATGAGTT+GGG | 0.571551 | 4_4:-2652328 | None:intergenic |
| AACTCTAAGAAAGGGTCCGA+TGG | 0.598447 | 4_4:+2651759 | Msa0663770:CDS |
| GAAATATCTTAACATGCCAT+CGG | 0.599816 | 4_4:-2651775 | None:intergenic |
| GTGAATATGCCATGAAACAA+GGG | 0.602322 | 4_4:+2651718 | Msa0663770:CDS |
| ACAGGCTGTTTGGCTTGGAG+AGG | 0.607180 | 4_4:-2652355 | None:intergenic |
| TGCTTGGAGAGGAACATGAC+AGG | 0.617611 | 4_4:-2652373 | None:intergenic |
| CATCCTTTATTAGCCCCTGA+CGG | 0.631077 | 4_4:+2651555 | Msa0663770:CDS |
| CCTGACGGAGAGCTAGCTGG+CGG | 0.636460 | 4_4:+2651570 | Msa0663770:CDS |
| GGATGATCGATCAATATAGG+AGG | 0.639611 | 4_4:-2651537 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATAAAAAATAAAATATAGA+AGG | - | chr4_4:2652225-2652244 | None:intergenic | 10.0% |
| !! | CATAAAAAATAAAATATAGA+AGG | - | chr4_4:2652225-2652244 | None:intergenic | 10.0% |
| !!! | ACTTTAAAGTTAATAAAAGA+TGG | - | chr4_4:2652159-2652178 | None:intergenic | 15.0% |
| !!! | ACTTTAAAGTTAATAAAAGA+TGG | - | chr4_4:2652159-2652178 | None:intergenic | 15.0% |
| !!! | GTTTTAAAATACCTCATATT+TGG | + | chr4_4:2652075-2652094 | Msa0663770:intron | 20.0% |
| !! | AATAAAAAAATGAGAGAAGA+GGG | - | chr4_4:2652113-2652132 | None:intergenic | 20.0% |
| !! | AAATAAAAAAATGAGAGAAG+AGG | - | chr4_4:2652114-2652133 | None:intergenic | 20.0% |
| !!! | GTTTTAAAATACCTCATATT+TGG | + | chr4_4:2652075-2652094 | Msa0663770:intron | 20.0% |
| !! | AATAAAAAAATGAGAGAAGA+GGG | - | chr4_4:2652113-2652132 | None:intergenic | 20.0% |
| !! | AAATAAAAAAATGAGAGAAG+AGG | - | chr4_4:2652114-2652133 | None:intergenic | 20.0% |
| !! | TATCGGTATGTCTTTTAAAT+CGG | + | chr4_4:2651671-2651690 | Msa0663770:CDS | 25.0% |
| !! | AAAACTAGAAACTCTAAGAA+AGG | + | chr4_4:2651750-2651769 | Msa0663770:CDS | 25.0% |
| !! | AAACTAGAAACTCTAAGAAA+GGG | + | chr4_4:2651751-2651770 | Msa0663770:CDS | 25.0% |
| ! | AATATCTTGGGTCAAAAATT+GGG | - | chr4_4:2651990-2652009 | None:intergenic | 25.0% |
| ! | TAATATCTTGGGTCAAAAAT+TGG | - | chr4_4:2651991-2652010 | None:intergenic | 25.0% |
| !!! | GTGTCAAATTGAATTTGTTT+TGG | - | chr4_4:2652249-2652268 | None:intergenic | 25.0% |
| !! | TATCGGTATGTCTTTTAAAT+CGG | + | chr4_4:2651671-2651690 | Msa0663770:CDS | 25.0% |
| !! | AAAACTAGAAACTCTAAGAA+AGG | + | chr4_4:2651750-2651769 | Msa0663770:CDS | 25.0% |
| !! | AAACTAGAAACTCTAAGAAA+GGG | + | chr4_4:2651751-2651770 | Msa0663770:CDS | 25.0% |
| ! | AATATCTTGGGTCAAAAATT+GGG | - | chr4_4:2651990-2652009 | None:intergenic | 25.0% |
| ! | TAATATCTTGGGTCAAAAAT+TGG | - | chr4_4:2651991-2652010 | None:intergenic | 25.0% |
| !!! | GTGTCAAATTGAATTTGTTT+TGG | - | chr4_4:2652249-2652268 | None:intergenic | 25.0% |
| AAAGGATGATCGATCAATAT+AGG | - | chr4_4:2651543-2651562 | None:intergenic | 30.0% | |
| !! | GACAACATTTGTTGTTTCAA+AGG | - | chr4_4:2651628-2651647 | None:intergenic | 30.0% |
| TTAAAAGACATACCGATAGT+AGG | - | chr4_4:2651669-2651688 | None:intergenic | 30.0% | |
| GAAATATCTTAACATGCCAT+CGG | - | chr4_4:2651778-2651797 | None:intergenic | 30.0% | |
| !! | ATAACGGTTGGTTTAAAGAA+GGG | + | chr4_4:2651891-2651910 | Msa0663770:intron | 30.0% |
| AGATAAGTCCAACTAAATCA+CGG | + | chr4_4:2651955-2651974 | Msa0663770:intron | 30.0% | |
| ATATCTTGGGTCAAAAATTG+GGG | - | chr4_4:2651989-2652008 | None:intergenic | 30.0% | |
| TGAAAAGTCAAAGACTTATC+CGG | - | chr4_4:2652033-2652052 | None:intergenic | 30.0% | |
| ! | TGACTTTTCAGCGAAAAATT+CGG | + | chr4_4:2652043-2652062 | Msa0663770:intron | 30.0% |
| AAAGGATGATCGATCAATAT+AGG | - | chr4_4:2651543-2651562 | None:intergenic | 30.0% | |
| !! | GACAACATTTGTTGTTTCAA+AGG | - | chr4_4:2651628-2651647 | None:intergenic | 30.0% |
| TTAAAAGACATACCGATAGT+AGG | - | chr4_4:2651669-2651688 | None:intergenic | 30.0% | |
| GAAATATCTTAACATGCCAT+CGG | - | chr4_4:2651778-2651797 | None:intergenic | 30.0% | |
| !! | ATAACGGTTGGTTTAAAGAA+GGG | + | chr4_4:2651891-2651910 | Msa0663770:intron | 30.0% |
| AGATAAGTCCAACTAAATCA+CGG | + | chr4_4:2651955-2651974 | Msa0663770:intron | 30.0% | |
| ATATCTTGGGTCAAAAATTG+GGG | - | chr4_4:2651989-2652008 | None:intergenic | 30.0% | |
| TGAAAAGTCAAAGACTTATC+CGG | - | chr4_4:2652033-2652052 | None:intergenic | 30.0% | |
| ! | TGACTTTTCAGCGAAAAATT+CGG | + | chr4_4:2652043-2652062 | Msa0663770:intron | 30.0% |
| !! | ATTTGTTGTTTCAAAGGTCC+CGG | - | chr4_4:2651622-2651641 | None:intergenic | 35.0% |
| GATAAATTCACGCCTACTAT+CGG | + | chr4_4:2651654-2651673 | Msa0663770:CDS | 35.0% | |
| CTTGTTTCATGGCATATTCA+CGG | - | chr4_4:2651719-2651738 | None:intergenic | 35.0% | |
| GTGAATATGCCATGAAACAA+GGG | + | chr4_4:2651718-2651737 | Msa0663770:CDS | 35.0% | |
| ! | ATTCTAACTTGTGCAAGAGA+AGG | + | chr4_4:2651798-2651817 | Msa0663770:CDS | 35.0% |
| ! | TTGGTGGTATGTTTGATTCA+TGG | - | chr4_4:2651827-2651846 | None:intergenic | 35.0% |
| TGATTGCTCAGCTAAGATAA+CGG | + | chr4_4:2651875-2651894 | Msa0663770:CDS | 35.0% | |
| !! | GATAACGGTTGGTTTAAAGA+AGG | + | chr4_4:2651890-2651909 | Msa0663770:intron | 35.0% |
| TTGGTTTAAAGAAGGGTCTA+TGG | + | chr4_4:2651898-2651917 | Msa0663770:intron | 35.0% | |
| TATGACAACCGTGATTTAGT+TGG | - | chr4_4:2651966-2651985 | None:intergenic | 35.0% | |
| GAAAAGTCAAAGACTTATCC+GGG | - | chr4_4:2652032-2652051 | None:intergenic | 35.0% | |
| !! | CAAAATTTTGTTGCTTGGAG+AGG | - | chr4_4:2652387-2652406 | None:intergenic | 35.0% |
| ! | ATGGGCAAAATTTTGTTGCT+TGG | - | chr4_4:2652392-2652411 | None:intergenic | 35.0% |
| !! | ATTTGTTGTTTCAAAGGTCC+CGG | - | chr4_4:2651622-2651641 | None:intergenic | 35.0% |
| GATAAATTCACGCCTACTAT+CGG | + | chr4_4:2651654-2651673 | Msa0663770:CDS | 35.0% | |
| CTTGTTTCATGGCATATTCA+CGG | - | chr4_4:2651719-2651738 | None:intergenic | 35.0% | |
| GTGAATATGCCATGAAACAA+GGG | + | chr4_4:2651718-2651737 | Msa0663770:CDS | 35.0% | |
| ! | ATTCTAACTTGTGCAAGAGA+AGG | + | chr4_4:2651798-2651817 | Msa0663770:CDS | 35.0% |
| ! | TTGGTGGTATGTTTGATTCA+TGG | - | chr4_4:2651827-2651846 | None:intergenic | 35.0% |
| TGATTGCTCAGCTAAGATAA+CGG | + | chr4_4:2651875-2651894 | Msa0663770:CDS | 35.0% | |
| !! | GATAACGGTTGGTTTAAAGA+AGG | + | chr4_4:2651890-2651909 | Msa0663770:intron | 35.0% |
| TTGGTTTAAAGAAGGGTCTA+TGG | + | chr4_4:2651898-2651917 | Msa0663770:intron | 35.0% | |
| TATGACAACCGTGATTTAGT+TGG | - | chr4_4:2651966-2651985 | None:intergenic | 35.0% | |
| GAAAAGTCAAAGACTTATCC+GGG | - | chr4_4:2652032-2652051 | None:intergenic | 35.0% | |
| !! | CAAAATTTTGTTGCTTGGAG+AGG | - | chr4_4:2652387-2652406 | None:intergenic | 35.0% |
| ! | ATGGGCAAAATTTTGTTGCT+TGG | - | chr4_4:2652392-2652411 | None:intergenic | 35.0% |
| GGATGATCGATCAATATAGG+AGG | - | chr4_4:2651540-2651559 | None:intergenic | 40.0% | |
| CGTGAATATGCCATGAAACA+AGG | + | chr4_4:2651717-2651736 | Msa0663770:CDS | 40.0% | |
| GTTGGATTCGTCTTCAAAGT+TGG | - | chr4_4:2651846-2651865 | None:intergenic | 40.0% | |
| GAGCAATCAAGTTTCTTCGT+TGG | - | chr4_4:2651864-2651883 | None:intergenic | 40.0% | |
| GACCCAAGATATTACAGACA+CGG | + | chr4_4:2651997-2652016 | Msa0663770:intron | 40.0% | |
| ACCCAAGATATTACAGACAC+GGG | + | chr4_4:2651998-2652017 | Msa0663770:intron | 40.0% | |
| ACCCGTGTCTGTAATATCTT+GGG | - | chr4_4:2652002-2652021 | None:intergenic | 40.0% | |
| GGATGATCGATCAATATAGG+AGG | - | chr4_4:2651540-2651559 | None:intergenic | 40.0% | |
| CGTGAATATGCCATGAAACA+AGG | + | chr4_4:2651717-2651736 | Msa0663770:CDS | 40.0% | |
| GTTGGATTCGTCTTCAAAGT+TGG | - | chr4_4:2651846-2651865 | None:intergenic | 40.0% | |
| GAGCAATCAAGTTTCTTCGT+TGG | - | chr4_4:2651864-2651883 | None:intergenic | 40.0% | |
| GACCCAAGATATTACAGACA+CGG | + | chr4_4:2651997-2652016 | Msa0663770:intron | 40.0% | |
| ACCCAAGATATTACAGACAC+GGG | + | chr4_4:2651998-2652017 | Msa0663770:intron | 40.0% | |
| ACCCGTGTCTGTAATATCTT+GGG | - | chr4_4:2652002-2652021 | None:intergenic | 40.0% | |
| CATCCTTTATTAGCCCCTGA+CGG | + | chr4_4:2651555-2651574 | Msa0663770:CDS | 45.0% | |
| ! | GATCGCAAACCCTTGTTTCA+TGG | - | chr4_4:2651730-2651749 | None:intergenic | 45.0% |
| ! | AACTCTAAGAAAGGGTCCGA+TGG | + | chr4_4:2651759-2651778 | Msa0663770:CDS | 45.0% |
| GGATTCGTCTTCAAAGTTGG+TGG | - | chr4_4:2651843-2651862 | None:intergenic | 45.0% | |
| ! | TGCTCAGCTAAGATAACGGT+TGG | + | chr4_4:2651879-2651898 | Msa0663770:intron | 45.0% |
| GACCCGTGTCTGTAATATCT+TGG | - | chr4_4:2652003-2652022 | None:intergenic | 45.0% | |
| ! | CCTCATATTTGGTTCCGAGT+CGG | + | chr4_4:2652086-2652105 | Msa0663770:intron | 45.0% |
| ! | CTCATATTTGGTTCCGAGTC+GGG | + | chr4_4:2652087-2652106 | Msa0663770:intron | 45.0% |
| CATCCTTTATTAGCCCCTGA+CGG | + | chr4_4:2651555-2651574 | Msa0663770:CDS | 45.0% | |
| ! | GATCGCAAACCCTTGTTTCA+TGG | - | chr4_4:2651730-2651749 | None:intergenic | 45.0% |
| ! | AACTCTAAGAAAGGGTCCGA+TGG | + | chr4_4:2651759-2651778 | Msa0663770:CDS | 45.0% |
| GGATTCGTCTTCAAAGTTGG+TGG | - | chr4_4:2651843-2651862 | None:intergenic | 45.0% | |
| ! | TGCTCAGCTAAGATAACGGT+TGG | + | chr4_4:2651879-2651898 | Msa0663770:intron | 45.0% |
| GACCCGTGTCTGTAATATCT+TGG | - | chr4_4:2652003-2652022 | None:intergenic | 45.0% | |
| ! | CCTCATATTTGGTTCCGAGT+CGG | + | chr4_4:2652086-2652105 | Msa0663770:intron | 45.0% |
| ! | CTCATATTTGGTTCCGAGTC+GGG | + | chr4_4:2652087-2652106 | Msa0663770:intron | 45.0% |
| TCTCCGTCAGGGGCTAATAA+AGG | - | chr4_4:2651561-2651580 | None:intergenic | 50.0% | |
| ! | TGCTGCTCGTGTTGACGTTT+CGG | + | chr4_4:2651593-2651612 | Msa0663770:CDS | 50.0% |
| ! | CGTGTTGACGTTTCGGATTC+CGG | + | chr4_4:2651600-2651619 | Msa0663770:CDS | 50.0% |
| ! | GTGTTGACGTTTCGGATTCC+GGG | + | chr4_4:2651601-2651620 | Msa0663770:CDS | 50.0% |
| CAAAGACTTATCCGGGTTCG+AGG | - | chr4_4:2652025-2652044 | None:intergenic | 50.0% | |
| CAGCGAAAAATTCGGCAGAG+AGG | + | chr4_4:2652051-2652070 | Msa0663770:intron | 50.0% | |
| !! | CCGACTCGGAACCAAATATG+AGG | - | chr4_4:2652089-2652108 | None:intergenic | 50.0% |
| AGTTGGGAATGAGCTGCGTT+TGG | - | chr4_4:2652315-2652334 | None:intergenic | 50.0% | |
| CTGACAGGCTGTGATGAGTT+GGG | - | chr4_4:2652331-2652350 | None:intergenic | 50.0% | |
| ACATGACAGGCTGTTTGGCT+TGG | - | chr4_4:2652363-2652382 | None:intergenic | 50.0% | |
| GAGGAACATGACAGGCTGTT+TGG | - | chr4_4:2652368-2652387 | None:intergenic | 50.0% | |
| TGCTTGGAGAGGAACATGAC+AGG | - | chr4_4:2652376-2652395 | None:intergenic | 50.0% | |
| TCTCCGTCAGGGGCTAATAA+AGG | - | chr4_4:2651561-2651580 | None:intergenic | 50.0% | |
| ! | TGCTGCTCGTGTTGACGTTT+CGG | + | chr4_4:2651593-2651612 | Msa0663770:CDS | 50.0% |
| ! | CGTGTTGACGTTTCGGATTC+CGG | + | chr4_4:2651600-2651619 | Msa0663770:CDS | 50.0% |
| ! | GTGTTGACGTTTCGGATTCC+GGG | + | chr4_4:2651601-2651620 | Msa0663770:CDS | 50.0% |
| CAAAGACTTATCCGGGTTCG+AGG | - | chr4_4:2652025-2652044 | None:intergenic | 50.0% | |
| CAGCGAAAAATTCGGCAGAG+AGG | + | chr4_4:2652051-2652070 | Msa0663770:intron | 50.0% | |
| !! | CCGACTCGGAACCAAATATG+AGG | - | chr4_4:2652089-2652108 | None:intergenic | 50.0% |
| AGTTGGGAATGAGCTGCGTT+TGG | - | chr4_4:2652315-2652334 | None:intergenic | 50.0% | |
| CTGACAGGCTGTGATGAGTT+GGG | - | chr4_4:2652331-2652350 | None:intergenic | 50.0% | |
| ACATGACAGGCTGTTTGGCT+TGG | - | chr4_4:2652363-2652382 | None:intergenic | 50.0% | |
| GAGGAACATGACAGGCTGTT+TGG | - | chr4_4:2652368-2652387 | None:intergenic | 50.0% | |
| TGCTTGGAGAGGAACATGAC+AGG | - | chr4_4:2652376-2652395 | None:intergenic | 50.0% | |
| CCTGACAGGCTGTGATGAGT+TGG | - | chr4_4:2652332-2652351 | None:intergenic | 55.0% | |
| CCAACTCATCACAGCCTGTC+AGG | + | chr4_4:2652329-2652348 | Msa0663770:CDS | 55.0% | |
| GCTTGGAGAGGAAACCTGAC+AGG | - | chr4_4:2652346-2652365 | None:intergenic | 55.0% | |
| !! | ACAGGCTGTTTGGCTTGGAG+AGG | - | chr4_4:2652358-2652377 | None:intergenic | 55.0% |
| CCTGACAGGCTGTGATGAGT+TGG | - | chr4_4:2652332-2652351 | None:intergenic | 55.0% | |
| CCAACTCATCACAGCCTGTC+AGG | + | chr4_4:2652329-2652348 | Msa0663770:CDS | 55.0% | |
| GCTTGGAGAGGAAACCTGAC+AGG | - | chr4_4:2652346-2652365 | None:intergenic | 55.0% | |
| !! | ACAGGCTGTTTGGCTTGGAG+AGG | - | chr4_4:2652358-2652377 | None:intergenic | 55.0% |
| TGAGAGAAGAGGGCCCGACT+CGG | - | chr4_4:2652103-2652122 | None:intergenic | 60.0% | |
| TGAGAGAAGAGGGCCCGACT+CGG | - | chr4_4:2652103-2652122 | None:intergenic | 60.0% | |
| ! | GCCAGCTAGCTCTCCGTCAG+GGG | - | chr4_4:2651571-2651590 | None:intergenic | 65.0% |
| ! | CGCCAGCTAGCTCTCCGTCA+GGG | - | chr4_4:2651572-2651591 | None:intergenic | 65.0% |
| CCTGACGGAGAGCTAGCTGG+CGG | + | chr4_4:2651570-2651589 | Msa0663770:CDS | 65.0% | |
| CAGACACGGGTCCTCGAACC+CGG | + | chr4_4:2652011-2652030 | Msa0663770:intron | 65.0% | |
| ! | GCCAGCTAGCTCTCCGTCAG+GGG | - | chr4_4:2651571-2651590 | None:intergenic | 65.0% |
| ! | CGCCAGCTAGCTCTCCGTCA+GGG | - | chr4_4:2651572-2651591 | None:intergenic | 65.0% |
| CCTGACGGAGAGCTAGCTGG+CGG | + | chr4_4:2651570-2651589 | Msa0663770:CDS | 65.0% | |
| CAGACACGGGTCCTCGAACC+CGG | + | chr4_4:2652011-2652030 | Msa0663770:intron | 65.0% | |
| GCCCCTGACGGAGAGCTAGC+TGG | + | chr4_4:2651567-2651586 | Msa0663770:CDS | 70.0% | |
| ! | CCGCCAGCTAGCTCTCCGTC+AGG | - | chr4_4:2651573-2651592 | None:intergenic | 70.0% |
| GCCCCTGACGGAGAGCTAGC+TGG | + | chr4_4:2651567-2651586 | Msa0663770:CDS | 70.0% | |
| ! | CCGCCAGCTAGCTCTCCGTC+AGG | - | chr4_4:2651573-2651592 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2651525 | 2652426 | 2651525 | ID=Msa0663770;Name=Msa0663770 |
| chr4_4 | mRNA | 2651525 | 2652426 | 2651525 | ID=Msa0663770-mRNA-1;Parent=Msa0663770;Name=Msa0663770-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|0.5|1|1|2|0|158 |
| chr4_4 | exon | 2651525 | 2651896 | 2651525 | ID=Msa0663770-mRNA-1:exon:764;Parent=Msa0663770-mRNA-1 |
| chr4_4 | exon | 2652322 | 2652426 | 2652322 | ID=Msa0663770-mRNA-1:exon:765;Parent=Msa0663770-mRNA-1 |
| chr4_4 | CDS | 2651525 | 2651896 | 2651525 | ID=Msa0663770-mRNA-1:cds;Parent=Msa0663770-mRNA-1 |
| chr4_4 | CDS | 2652322 | 2652426 | 2652322 | ID=Msa0663770-mRNA-1:cds;Parent=Msa0663770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
