Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664390 | XP_039689795.1 | 73.529 | 136 | 24 | 3 | 123 | 246 | 1 | 136 | 7.38e-58 | 192 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664390 | sp|Q8H1G0|GAT28_ARATH | 44.578 | 166 | 47 | 2 | 81 | 245 | 136 | 257 | 9.51e-37 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664390 | A0A396HYL3 | 73.529 | 136 | 24 | 3 | 123 | 246 | 1 | 136 | 3.53e-58 | 192 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0664390 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664390 | MtrunA17_Chr4g0002231 | 73.529 | 136 | 24 | 3 | 123 | 246 | 1 | 136 | 6.79e-62 | 192 |
| Msa0664390 | MtrunA17_Chr4g0065421 | 62.222 | 90 | 29 | 1 | 1 | 85 | 1 | 90 | 1.43e-25 | 105 |
| Msa0664390 | MtrunA17_Chr3g0132761 | 40.252 | 159 | 37 | 4 | 90 | 245 | 131 | 234 | 9.03e-24 | 98.2 |
| Msa0664390 | MtrunA17_Chr5g0427661 | 39.634 | 164 | 41 | 5 | 85 | 245 | 129 | 237 | 8.44e-23 | 95.1 |
| Msa0664390 | MtrunA17_Chr3g0132751 | 35.000 | 160 | 51 | 4 | 88 | 245 | 128 | 236 | 2.99e-19 | 86.7 |
| Msa0664390 | MtrunA17_Chr4g0049741 | 31.466 | 232 | 98 | 6 | 23 | 245 | 32 | 211 | 3.25e-17 | 80.5 |
| Msa0664390 | MtrunA17_Chr4g0002251 | 87.500 | 32 | 4 | 0 | 210 | 241 | 8 | 39 | 4.43e-15 | 68.9 |
| Msa0664390 | MtrunA17_Chr4g0002261 | 59.615 | 52 | 20 | 1 | 82 | 132 | 15 | 66 | 2.40e-12 | 61.2 |
| Msa0664390 | MtrunA17_Chr3g0102511 | 42.353 | 85 | 41 | 3 | 162 | 245 | 5 | 82 | 6.47e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664390 | AT1G51600.1 | 44.578 | 166 | 47 | 2 | 81 | 245 | 136 | 257 | 9.67e-38 | 135 |
| Msa0664390 | AT1G51600.2 | 44.578 | 166 | 47 | 2 | 81 | 245 | 136 | 257 | 9.67e-38 | 135 |
| Msa0664390 | AT3G21175.1 | 40.244 | 164 | 54 | 1 | 82 | 245 | 134 | 253 | 2.56e-33 | 124 |
| Msa0664390 | AT3G21175.2 | 40.244 | 164 | 54 | 1 | 82 | 245 | 132 | 251 | 2.64e-33 | 124 |
| Msa0664390 | AT4G24470.3 | 37.107 | 159 | 48 | 3 | 87 | 245 | 142 | 248 | 8.64e-21 | 90.5 |
| Msa0664390 | AT4G24470.1 | 37.107 | 159 | 48 | 3 | 87 | 245 | 142 | 248 | 1.01e-20 | 90.5 |
| Msa0664390 | AT4G24470.2 | 37.107 | 159 | 48 | 3 | 87 | 245 | 142 | 248 | 1.01e-20 | 90.5 |
| Msa0664390 | AT3G21175.3 | 50.000 | 70 | 35 | 0 | 82 | 151 | 132 | 201 | 6.33e-16 | 75.5 |
Find 75 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAGAGAATGTTAGGGTTT+TGG | 0.199725 | 4_4:+3398324 | None:intergenic |
| GAGAAATGGGGTTTCAGTTT+TGG | 0.248316 | 4_4:+3398149 | None:intergenic |
| TGGACTTCTGTGGGCAAATA+AGG | 0.252080 | 4_4:-3394163 | Msa0664390:intron |
| AATTTGGTTTCTTCCGGTTT+TGG | 0.271499 | 4_4:+3398001 | None:intergenic |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4_4:+3394195 | None:intergenic |
| GTTGGAGAGTTGGGAGGCTT+TGG | 0.281390 | 4_4:+3398206 | None:intergenic |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4_4:+3394186 | None:intergenic |
| CATTGAAGAAAGAGAATGTT+AGG | 0.311293 | 4_4:+3398317 | None:intergenic |
| TGTTAAAATTTGGTTTCTTC+CGG | 0.329671 | 4_4:+3397995 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.333460 | 4_4:-3394561 | Msa0664390:intron |
| TTTAGGATGCAAAGAAATAA+AGG | 0.333460 | 4_4:-3397424 | Msa0664390:intron |
| TCTGTGAGAAAGTGTAAATT+TGG | 0.338132 | 4_4:+3398047 | None:intergenic |
| GAAATCTAAACCTTTGAAAT+CGG | 0.338857 | 4_4:+3398092 | None:intergenic |
| TTCTCACAGATTAGCTTCAT+TGG | 0.358559 | 4_4:-3398034 | Msa0664390:CDS |
| TGCTTCATCTTCTACTGAAT+CGG | 0.359786 | 4_4:-3393758 | Msa0664390:CDS |
| AACCCTCATGTTGGAGAGTT+GGG | 0.365892 | 4_4:+3398197 | None:intergenic |
| AAATGTGAAGATGCATAAAC+AGG | 0.367056 | 4_4:+3393804 | None:intergenic |
| CGGAACAAGTGAAGGTTTGA+TGG | 0.372961 | 4_4:-3397344 | Msa0664390:CDS |
| TCGACACAACAATGAAATAA+TGG | 0.374080 | 4_4:-3398247 | Msa0664390:CDS |
| CGGAACAAGTGAAGGTTTGA+TGG | 0.376343 | 4_4:-3394481 | Msa0664390:CDS |
| CTAACATTCTCTTTCTTCAA+TGG | 0.385467 | 4_4:-3398316 | Msa0664390:exon |
| TCAGGTCCACGCCGCATCAT+TGG | 0.388420 | 4_4:+3394213 | None:intergenic |
| AGTGTAAATTTGGGTGAAGT+AGG | 0.428207 | 4_4:+3398057 | None:intergenic |
| TTACACATTATCTTGCTGTT+GGG | 0.431240 | 4_4:+3397306 | None:intergenic |
| CTTACACATTATCTTGCTGT+TGG | 0.457624 | 4_4:+3397305 | None:intergenic |
| CTTACACATTATCTTGCTGT+TGG | 0.460419 | 4_4:+3394442 | None:intergenic |
| ATGAGTGTCTGATGAGAAAT+GGG | 0.462114 | 4_4:+3398136 | None:intergenic |
| AGACTCATCATGGTTGGACT+TGG | 0.463495 | 4_4:+3394524 | None:intergenic |
| AGACTCATCATGGTTGGACT+TGG | 0.463495 | 4_4:+3397387 | None:intergenic |
| TTACACATTATCTTGCTGTT+GGG | 0.464252 | 4_4:+3394443 | None:intergenic |
| TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4_4:+3394538 | None:intergenic |
| TGGACTTGGCAGATGTAAAT+CGG | 0.465549 | 4_4:+3397401 | None:intergenic |
| TTTGGATTGAAGTTTGAGTT+CGG | 0.467747 | 4_4:+3398224 | None:intergenic |
| AATGAGTGTCTGATGAGAAA+TGG | 0.473328 | 4_4:+3398135 | None:intergenic |
| AAATCTAAACCTTTGAAATC+GGG | 0.482007 | 4_4:+3398093 | None:intergenic |
| GCATCGGCTGAAATGAATTA+CGG | 0.482440 | 4_4:-3397364 | Msa0664390:CDS |
| TAACCCTCATGTTGGAGAGT+TGG | 0.484443 | 4_4:+3398196 | None:intergenic |
| CAGCCGATGCAGACTCATCA+TGG | 0.498772 | 4_4:+3394514 | None:intergenic |
| CAGCCGATGCAGACTCATCA+TGG | 0.498772 | 4_4:+3397377 | None:intergenic |
| CAATGCTTGTGGACTTCTGT+GGG | 0.512002 | 4_4:-3394172 | Msa0664390:CDS |
| GCAATGCTTGTGGACTTCTG+TGG | 0.515681 | 4_4:-3394173 | Msa0664390:CDS |
| CTGTGAGAAAGTGTAAATTT+GGG | 0.521016 | 4_4:+3398048 | None:intergenic |
| GAGACGAGAAGAAACAATGA+AGG | 0.521809 | 4_4:+3393837 | None:intergenic |
| ATTGAAGAAAGAGAATGTTA+GGG | 0.524300 | 4_4:+3398318 | None:intergenic |
| ATGAATTACGGAACAAGTGA+AGG | 0.525539 | 4_4:-3397352 | Msa0664390:CDS |
| GGTAATAATAACCCTCATGT+TGG | 0.534990 | 4_4:+3398188 | None:intergenic |
| ATGATGCGGCGTGGACCTGA+AGG | 0.535411 | 4_4:-3394210 | Msa0664390:CDS |
| TTCGTAGAGAGGTAGCATTA+AGG | 0.536977 | 4_4:-3397954 | Msa0664390:intron |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4_4:-3394183 | Msa0664390:CDS |
| ACAATGAAGGGGAAGATGAA+TGG | 0.542883 | 4_4:+3393850 | None:intergenic |
| ATGAATTGCGGAACAAGTGA+AGG | 0.546961 | 4_4:-3394489 | Msa0664390:CDS |
| GGTATTCCACCCGATTTCAA+AGG | 0.560480 | 4_4:-3398102 | Msa0664390:CDS |
| AGACACTCATTTCGAACAAG+AGG | 0.579521 | 4_4:-3398123 | Msa0664390:CDS |
| TCTAAACCTTTGAAATCGGG+TGG | 0.581523 | 4_4:+3398096 | None:intergenic |
| CGATGCAGACTCATCATGGT+TGG | 0.584481 | 4_4:+3394518 | None:intergenic |
| CGATGCAGACTCATCATGGT+TGG | 0.584481 | 4_4:+3397381 | None:intergenic |
| CAACCATGATGAGTCTGCAT+CGG | 0.601385 | 4_4:-3394517 | Msa0664390:CDS |
| CAACCATGATGAGTCTGCAT+CGG | 0.601385 | 4_4:-3397380 | Msa0664390:CDS |
| TGATGCGGCGTGGACCTGAA+GGG | 0.602634 | 4_4:-3394209 | Msa0664390:CDS |
| CCTCCCAACTCTCCAACATG+AGG | 0.608646 | 4_4:-3398200 | Msa0664390:CDS |
| GGTTTGATGGCAGACAATGA+TGG | 0.622019 | 4_4:-3397331 | Msa0664390:CDS |
| AGAAGTGCACGCCAATGATG+CGG | 0.629029 | 4_4:-3394224 | Msa0664390:CDS |
| TCATCTTCTACTGAATCGGA+TGG | 0.629325 | 4_4:-3393754 | Msa0664390:CDS |
| AGACGAGAAGAAACAATGAA+GGG | 0.638116 | 4_4:+3393838 | None:intergenic |
| GCATCGGCTGAAATGAATTG+CGG | 0.643791 | 4_4:-3394501 | Msa0664390:CDS |
| CTCCCAACTCTCCAACATGA+GGG | 0.649113 | 4_4:-3398199 | Msa0664390:CDS |
| CCTCATGTTGGAGAGTTGGG+AGG | 0.649867 | 4_4:+3398200 | None:intergenic |
| GAAGTCCACAAGCATTGCAG+AGG | 0.650799 | 4_4:+3394178 | None:intergenic |
| GACGAGAAGAAACAATGAAG+GGG | 0.651543 | 4_4:+3393839 | None:intergenic |
| TCGGTGTAATGTTCGTAGAG+AGG | 0.656453 | 4_4:-3397965 | Msa0664390:CDS |
| TGCACGCCAATGATGCGGCG+TGG | 0.659677 | 4_4:-3394219 | Msa0664390:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.669436 | 4_4:+3394179 | None:intergenic |
| AATGTGAAGATGCATAAACA+GGG | 0.669888 | 4_4:+3393805 | None:intergenic |
| TGAGTGTCTGATGAGAAATG+GGG | 0.715103 | 4_4:+3398137 | None:intergenic |
| GGTTTGATGGCAGACAACGA+TGG | 0.718774 | 4_4:-3394468 | Msa0664390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATTTTTTTATTTTATA+CGG | + | chr4_4:3398064-3398083 | None:intergenic | 0.0% |
| !!! | TAAAAACTAAAAATGTTTTT+AGG | + | chr4_4:3396996-3397015 | None:intergenic | 10.0% |
| !! | TAAAAAATTGTATAAGAAAA+TGG | - | chr4_4:3397187-3397206 | Msa0664390:intron | 10.0% |
| !!! | CAAATTTTAACAAAAATGTT+CGG | - | chr4_4:3394089-3394108 | Msa0664390:intron | 15.0% |
| !!! | AAAATTTTGACAAAAAAGTT+CGG | - | chr4_4:3395871-3395890 | Msa0664390:intron | 15.0% |
| !! | TGGAAAAAAAATAAATACAA+GGG | - | chr4_4:3396462-3396481 | Msa0664390:intron | 15.0% |
| !!! | ATAATACATTTGATTTAAAG+TGG | - | chr4_4:3396938-3396957 | Msa0664390:intron | 15.0% |
| !!! | TAATACATTTGATTTAAAGT+GGG | - | chr4_4:3396939-3396958 | Msa0664390:intron | 15.0% |
| !! | TTAAATTACTAATAAGGATA+TGG | - | chr4_4:3397038-3397057 | Msa0664390:intron | 15.0% |
| !! | GTATTCTAATCTATATATTA+TGG | - | chr4_4:3397696-3397715 | Msa0664390:intron | 15.0% |
| !! | CCATTTATCAAATAATATAA+AGG | + | chr4_4:3397784-3397803 | None:intergenic | 15.0% |
| !! | CCTTTATATTATTTGATAAA+TGG | - | chr4_4:3397781-3397800 | Msa0664390:intron | 15.0% |
| !! | ATTAACCAATAATAATTGTA+TGG | + | chr4_4:3397998-3398017 | None:intergenic | 15.0% |
| !!! | CGAACATTTTTGTTAAAATT+TGG | + | chr4_4:3394091-3394110 | None:intergenic | 20.0% |
| !! | TTGCACATAAAACAAAATAA+TGG | + | chr4_4:3394602-3394621 | None:intergenic | 20.0% |
| !!! | TATTTTGCGATTATGAAAAA+TGG | + | chr4_4:3394981-3395000 | None:intergenic | 20.0% |
| !!! | GATAGATATTTGCTTTTAAA+AGG | - | chr4_4:3395051-3395070 | Msa0664390:intron | 20.0% |
| !! | CAAAGTTATATCATTCTTTA+TGG | + | chr4_4:3395244-3395263 | None:intergenic | 20.0% |
| !! | ATAACTTTGCAAATTTAAAG+TGG | - | chr4_4:3395255-3395274 | Msa0664390:intron | 20.0% |
| !!! | TAACTTTGCAAATTTAAAGT+GGG | - | chr4_4:3395256-3395275 | Msa0664390:intron | 20.0% |
| !!! | TTAATTTTGAATTCCTAACA+AGG | - | chr4_4:3395317-3395336 | Msa0664390:intron | 20.0% |
| !! | TAAGAAATTGTAAACGAAAA+TGG | - | chr4_4:3395442-3395461 | Msa0664390:intron | 20.0% |
| !! | CACATACAATAAAATAACTT+CGG | + | chr4_4:3395724-3395743 | None:intergenic | 20.0% |
| !!! | TGATAGATATTTGTTTCTTT+TGG | - | chr4_4:3396310-3396329 | Msa0664390:intron | 20.0% |
| !!! | GATAGATATTTGTTTCTTTT+GGG | - | chr4_4:3396311-3396330 | Msa0664390:intron | 20.0% |
| !!! | ATAGATATTTGTTTCTTTTG+GGG | - | chr4_4:3396312-3396331 | Msa0664390:intron | 20.0% |
| !! | ACTATATATTGTTTCAGTTT+CGG | - | chr4_4:3396367-3396386 | Msa0664390:intron | 20.0% |
| !! | GTGGAAAAAAAATAAATACA+AGG | - | chr4_4:3396461-3396480 | Msa0664390:intron | 20.0% |
| !! | GGAAAAAAAATAAATACAAG+GGG | - | chr4_4:3396463-3396482 | Msa0664390:intron | 20.0% |
| !! | TAAATCAAATGTATTATGAG+TGG | + | chr4_4:3396935-3396954 | None:intergenic | 20.0% |
| !!! | AATACATTTGATTTAAAGTG+GGG | - | chr4_4:3396940-3396959 | Msa0664390:intron | 20.0% |
| !! | TAGAAGATTATCATTACATA+TGG | + | chr4_4:3397317-3397336 | None:intergenic | 20.0% |
| !! | CACATAAAACAAAATAATGT+CGG | + | chr4_4:3397462-3397481 | None:intergenic | 20.0% |
| !!! | CTTGAAAATAAAGTCTTATT+TGG | - | chr4_4:3397731-3397750 | Msa0664390:intron | 20.0% |
| !!! | TTATTGGTTAATCATGATTT+TGG | - | chr4_4:3398006-3398025 | Msa0664390:CDS | 20.0% |
| ! | ATTGAAGAAAGAGAATGTTA+GGG | + | chr4_4:3393758-3393777 | None:intergenic | 25.0% |
| !!! | AAATCTAAACCTTTGAAATC+GGG | + | chr4_4:3393983-3394002 | None:intergenic | 25.0% |
| !!! | GAAATCTAAACCTTTGAAAT+CGG | + | chr4_4:3393984-3394003 | None:intergenic | 25.0% |
| !! | TGTTAAAATTTGGTTTCTTC+CGG | + | chr4_4:3394081-3394100 | None:intergenic | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+TGG | + | chr4_4:3394336-3394355 | None:intergenic | 25.0% |
| ! | CACATAAAACAAAATAATGG+TGG | + | chr4_4:3394599-3394618 | None:intergenic | 25.0% |
| ! | CAAATACAAGTAACTTCTTT+AGG | - | chr4_4:3394632-3394651 | Msa0664390:intron | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_4:3394649-3394668 | Msa0664390:intron | 25.0% |
| !!! | ACTGGTTTATTTTTGAACAA+GGG | - | chr4_4:3394794-3394813 | Msa0664390:intron | 25.0% |
| !!! | AGATATTTGCTTTTAAAAGG+AGG | - | chr4_4:3395054-3395073 | Msa0664390:intron | 25.0% |
| ! | ATTTCAGTTCATATTAGTCA+AGG | - | chr4_4:3395147-3395166 | Msa0664390:intron | 25.0% |
| !!! | TATATCAGTTAAGCTTTAGA+TGG | + | chr4_4:3395198-3395217 | None:intergenic | 25.0% |
| ! | ATATCATTCTTTATGGCATA+AGG | + | chr4_4:3395237-3395256 | None:intergenic | 25.0% |
| !! | AACTTTGCAAATTTAAAGTG+GGG | - | chr4_4:3395257-3395276 | Msa0664390:intron | 25.0% |
| ! | GAGAAGATAAAAAACAAACT+TGG | - | chr4_4:3395376-3395395 | Msa0664390:intron | 25.0% |
| !! | TTTGAAGTAAAAATGTAAGC+AGG | - | chr4_4:3395504-3395523 | Msa0664390:intron | 25.0% |
| ! | GAGAAGATTATCATTACATA+CGG | + | chr4_4:3395582-3395601 | None:intergenic | 25.0% |
| ! | CAAATATAAGCAACTTCTTT+AGG | - | chr4_4:3395757-3395776 | Msa0664390:intron | 25.0% |
| ! | AAAAATAAGCCAATCCAAAA+GGG | + | chr4_4:3396069-3396088 | None:intergenic | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+AGG | + | chr4_4:3394336-3394355 | None:intergenic | 25.0% |
| ! | AAACAAATATCTATCATTGC+AGG | + | chr4_4:3396306-3396325 | None:intergenic | 25.0% |
| ! | AAATAAATACAAGGGGAAAT+CGG | - | chr4_4:3396470-3396489 | Msa0664390:intron | 25.0% |
| ! | AATTGTATAAGAAAATGGCA+AGG | - | chr4_4:3397192-3397211 | Msa0664390:intron | 25.0% |
| !! | TATCATTACATATGGTGTTA+AGG | + | chr4_4:3397309-3397328 | None:intergenic | 25.0% |
| ! | CAAATACAAGTAACTTCTTT+AGG | - | chr4_4:3394632-3394651 | Msa0664390:intron | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | - | chr4_4:3394649-3394668 | Msa0664390:intron | 25.0% |
| !!! | ACTGGTTTATTTTTGAACAA+GGG | - | chr4_4:3394794-3394813 | Msa0664390:intron | 25.0% |
| ! | ATAAAGGACAATTTCAGTAT+AGG | + | chr4_4:3397768-3397787 | None:intergenic | 25.0% |
| ! | TTGCTCCATACAATTATTAT+TGG | - | chr4_4:3397990-3398009 | Msa0664390:CDS | 25.0% |
| ! | TTATGTTTATTAATTCCACC+TGG | - | chr4_4:3398168-3398187 | Msa0664390:CDS | 25.0% |
| CATTGAAGAAAGAGAATGTT+AGG | + | chr4_4:3393759-3393778 | None:intergenic | 30.0% | |
| CTAACATTCTCTTTCTTCAA+TGG | - | chr4_4:3393757-3393776 | Msa0664390:CDS | 30.0% | |
| TCGACACAACAATGAAATAA+TGG | - | chr4_4:3393826-3393845 | Msa0664390:CDS | 30.0% | |
| ! | TTTGGATTGAAGTTTGAGTT+CGG | + | chr4_4:3393852-3393871 | None:intergenic | 30.0% |
| !!! | TTTGGGTTTTTTCTCTGATT+TGG | + | chr4_4:3393909-3393928 | None:intergenic | 30.0% |
| ! | CTGTGAGAAAGTGTAAATTT+GGG | + | chr4_4:3394028-3394047 | None:intergenic | 30.0% |
| ! | TCTGTGAGAAAGTGTAAATT+TGG | + | chr4_4:3394029-3394048 | None:intergenic | 30.0% |
| TGTTGAAATAACAAGTTCAC+CGG | - | chr4_4:3394152-3394171 | Msa0664390:intron | 30.0% | |
| ! | TAACTTTTGTGACTCAGTTT+GGG | + | chr4_4:3394267-3394286 | None:intergenic | 30.0% |
| ! | ATAACTTTTGTGACTCAGTT+TGG | + | chr4_4:3394268-3394287 | None:intergenic | 30.0% |
| AATGGCTCAATATTCTGTTT+GGG | + | chr4_4:3394318-3394337 | None:intergenic | 30.0% | |
| AAATGGCTCAATATTCTGTT+TGG | + | chr4_4:3394319-3394338 | None:intergenic | 30.0% | |
| AAACAGAATATTGAGCCATT+TGG | - | chr4_4:3394318-3394337 | Msa0664390:intron | 30.0% | |
| !! | TTACACATTATCTTGCTGTT+GGG | + | chr4_4:3394770-3394789 | None:intergenic | 30.0% |
| ! | AAGATAATGTGTAAGTTGAC+TGG | - | chr4_4:3394776-3394795 | Msa0664390:intron | 30.0% |
| !!! | GACTGGTTTATTTTTGAACA+AGG | - | chr4_4:3394793-3394812 | Msa0664390:intron | 30.0% |
| TATGATTCATAAGCTTGTCA+AGG | - | chr4_4:3394864-3394883 | Msa0664390:intron | 30.0% | |
| AAATATCTATCATTGCAGAC+TGG | + | chr4_4:3395042-3395061 | None:intergenic | 30.0% | |
| !! | TCTTTTGGGAAATAGTATTC+AGG | - | chr4_4:3395090-3395109 | Msa0664390:intron | 30.0% |
| AATTGTAAACGAAAATGGTG+AGG | - | chr4_4:3395447-3395466 | Msa0664390:intron | 30.0% | |
| ATTGTAAACGAAAATGGTGA+GGG | - | chr4_4:3395448-3395467 | Msa0664390:intron | 30.0% | |
| !! | CTATTACACTGCTTTAAGAA+GGG | + | chr4_4:3395611-3395630 | None:intergenic | 30.0% |
| !! | ACTATTACACTGCTTTAAGA+AGG | + | chr4_4:3395612-3395631 | None:intergenic | 30.0% |
| ! | TTTAGGATGCAAAGAAGTAA+AGG | - | chr4_4:3395774-3395793 | Msa0664390:intron | 30.0% |
| TAGCATTAAGGTATGTTTAG+AGG | - | chr4_4:3395913-3395932 | Msa0664390:intron | 30.0% | |
| AGCATTAAGGTATGTTTAGA+GGG | - | chr4_4:3395914-3395933 | Msa0664390:intron | 30.0% | |
| GTTTCGGTTCATATTAGTTA+AGG | - | chr4_4:3396383-3396402 | Msa0664390:intron | 30.0% | |
| GTTCATATTAGTTAAGGACT+TGG | - | chr4_4:3396389-3396408 | Msa0664390:intron | 30.0% | |
| !! | TATTAGTGCTAAGCTTTAGA+TGG | + | chr4_4:3396434-3396453 | None:intergenic | 30.0% |
| AAGCTTAGCACTAATAAACA+CGG | - | chr4_4:3396438-3396457 | Msa0664390:intron | 30.0% | |
| ! | ATGCGGATTATCATATGTAT+AGG | + | chr4_4:3396587-3396606 | None:intergenic | 30.0% |
| !!! | CTGTTGTTTTGAGGTTTTTA+GGG | + | chr4_4:3396730-3396749 | None:intergenic | 30.0% |
| !!! | TCTGTTGTTTTGAGGTTTTT+AGG | + | chr4_4:3396731-3396750 | None:intergenic | 30.0% |
| ! | ATCACATATGTTTGCTACAT+AGG | + | chr4_4:3395353-3395372 | None:intergenic | 30.0% |
| AGAGAAGATAGAAACAAACT+AGG | - | chr4_4:3397090-3397109 | Msa0664390:intron | 30.0% | |
| GTTGAAGTAAAAATGAAAGC+AGG | - | chr4_4:3397249-3397268 | Msa0664390:intron | 30.0% | |
| !! | TTACACATTATCTTGCTGTT+GGG | + | chr4_4:3394770-3394789 | None:intergenic | 30.0% |
| AAGATAATGTGTAAGTAGAC+TGG | - | chr4_4:3397639-3397658 | Msa0664390:intron | 30.0% | |
| !!! | GACTGGTTTATTTTTGAACA+AGG | - | chr4_4:3394793-3394812 | Msa0664390:intron | 30.0% |
| TTTCAACTCATATCAGTTGT+AGG | - | chr4_4:3397810-3397829 | Msa0664390:intron | 30.0% | |
| ATAATTGTATGGAGCAACAT+TGG | + | chr4_4:3397987-3398006 | None:intergenic | 30.0% | |
| TCACAATGACAGATAAATGA+GGG | + | chr4_4:3398107-3398126 | None:intergenic | 30.0% | |
| TTCACAATGACAGATAAATG+AGG | + | chr4_4:3398108-3398127 | None:intergenic | 30.0% | |
| TCATTGTGAATGTGTTAAAG+TGG | - | chr4_4:3398118-3398137 | Msa0664390:CDS | 30.0% | |
| AATGTGAAGATGCATAAACA+GGG | + | chr4_4:3398271-3398290 | None:intergenic | 30.0% | |
| AAATGTGAAGATGCATAAAC+AGG | + | chr4_4:3398272-3398291 | None:intergenic | 30.0% | |
| GGTAATAATAACCCTCATGT+TGG | + | chr4_4:3393888-3393907 | None:intergenic | 35.0% | |
| ! | AGAAATGGGGTTTCAGTTTT+GGG | + | chr4_4:3393926-3393945 | None:intergenic | 35.0% |
| ATGAGTGTCTGATGAGAAAT+GGG | + | chr4_4:3393940-3393959 | None:intergenic | 35.0% | |
| AATGAGTGTCTGATGAGAAA+TGG | + | chr4_4:3393941-3393960 | None:intergenic | 35.0% | |
| !! | GTGAAGTAGGAGTTTTATGA+TGG | + | chr4_4:3394006-3394025 | None:intergenic | 35.0% |
| AGTGTAAATTTGGGTGAAGT+AGG | + | chr4_4:3394019-3394038 | None:intergenic | 35.0% | |
| !! | TTCTCACAGATTAGCTTCAT+TGG | - | chr4_4:3394039-3394058 | Msa0664390:intron | 35.0% |
| ! | TGGTTACATTTTGCCAAAAC+CGG | - | chr4_4:3394059-3394078 | Msa0664390:intron | 35.0% |
| !! | AATTTGGTTTCTTCCGGTTT+TGG | + | chr4_4:3394075-3394094 | None:intergenic | 35.0% |
| AGTTGTTTATCCAAACAAGC+CGG | + | chr4_4:3394174-3394193 | None:intergenic | 35.0% | |
| GAATATTGAGCCATTTGGAT+TGG | - | chr4_4:3394323-3394342 | Msa0664390:intron | 35.0% | |
| TGATTCATAAGCTTGTGTCA+AGG | - | chr4_4:3394400-3394419 | Msa0664390:intron | 35.0% | |
| ATGAATTACGGAACAAGTGA+AGG | - | chr4_4:3394721-3394740 | Msa0664390:intron | 35.0% | |
| ! | CTTACACATTATCTTGCTGT+TGG | + | chr4_4:3394771-3394790 | None:intergenic | 35.0% |
| ! | AACTATGGACTTGTTTGGAT+TGG | + | chr4_4:3395006-3395025 | None:intergenic | 35.0% |
| AATCCAAACAAGTCCATAGT+TGG | - | chr4_4:3395005-3395024 | Msa0664390:intron | 35.0% | |
| GTTCATATTAGTCAAGGACT+TGG | - | chr4_4:3395153-3395172 | Msa0664390:intron | 35.0% | |
| TTGAATTCCTAACAAGGAGA+TGG | - | chr4_4:3395323-3395342 | Msa0664390:intron | 35.0% | |
| GAAAATGGTGAGGGAAATAT+TGG | - | chr4_4:3395457-3395476 | Msa0664390:intron | 35.0% | |
| ! | TGGACTTGGTAGATGTAAAT+CGG | + | chr4_4:3395800-3395819 | None:intergenic | 35.0% |
| ! | ATAAGTTTTGCGAGACTCTT+TGG | + | chr4_4:3396002-3396021 | None:intergenic | 35.0% |
| AAAAGGGTCAATGTTCTGTT+TGG | + | chr4_4:3396053-3396072 | None:intergenic | 35.0% | |
| ! | AAACAGAACATTGACCCTTT+TGG | - | chr4_4:3396052-3396071 | Msa0664390:intron | 35.0% |
| AGCTTAGCACTAATAAACAC+GGG | - | chr4_4:3396439-3396458 | Msa0664390:intron | 35.0% | |
| AACCTCAAAACAACAGACTA+AGG | - | chr4_4:3396734-3396753 | Msa0664390:intron | 35.0% | |
| GGGGATTTGATGAATACATT+TGG | - | chr4_4:3395276-3395295 | Msa0664390:intron | 35.0% | |
| GAAAATGGCAAGGAAAATGT+TGG | - | chr4_4:3397202-3397221 | Msa0664390:intron | 35.0% | |
| CTATTACACTGCCTTAAGAA+AGG | + | chr4_4:3397346-3397365 | None:intergenic | 35.0% | |
| ACTCAGCATATAAACTTGAC+AGG | + | chr4_4:3397393-3397412 | None:intergenic | 35.0% | |
| AAATAATGTCGGTCAGAACA+TGG | + | chr4_4:3397451-3397470 | None:intergenic | 35.0% | |
| ! | CTTACACATTATCTTGCTGT+TGG | + | chr4_4:3394771-3394790 | None:intergenic | 35.0% |
| AGCAACATTGGAAAAACGAA+AGG | + | chr4_4:3397975-3397994 | None:intergenic | 35.0% | |
| ! | CGAATTGGCTCAATATTACA+GGG | + | chr4_4:3398033-3398052 | None:intergenic | 35.0% |
| CCTGTAATATTGAGCCAATT+CGG | - | chr4_4:3398031-3398050 | Msa0664390:CDS | 35.0% | |
| ! | ATATTGAGCCAATTCGGTTT+TGG | - | chr4_4:3398037-3398056 | Msa0664390:CDS | 35.0% |
| AGATAAATGAGGGGAAAAAG+TGG | + | chr4_4:3398097-3398116 | None:intergenic | 35.0% | |
| CACAATGACAGATAAATGAG+GGG | + | chr4_4:3398106-3398125 | None:intergenic | 35.0% | |
| ! | GTTAAAGTGGCATACTGATT+TGG | - | chr4_4:3398131-3398150 | Msa0664390:CDS | 35.0% |
| AGACGAGAAGAAACAATGAA+GGG | + | chr4_4:3398238-3398257 | None:intergenic | 35.0% | |
| TGCTTCATCTTCTACTGAAT+CGG | - | chr4_4:3398315-3398334 | Msa0664390:exon | 35.0% | |
| ! | GAGAAATGGGGTTTCAGTTT+TGG | + | chr4_4:3393927-3393946 | None:intergenic | 40.0% |
| TGAGTGTCTGATGAGAAATG+GGG | + | chr4_4:3393939-3393958 | None:intergenic | 40.0% | |
| AGACACTCATTTCGAACAAG+AGG | - | chr4_4:3393950-3393969 | Msa0664390:intron | 40.0% | |
| !! | TCTAAACCTTTGAAATCGGG+TGG | + | chr4_4:3393980-3393999 | None:intergenic | 40.0% |
| TTCGTAGAGAGGTAGCATTA+AGG | - | chr4_4:3394119-3394138 | Msa0664390:intron | 40.0% | |
| AAATAATGGTGGTCAGAACG+TGG | + | chr4_4:3394588-3394607 | None:intergenic | 40.0% | |
| TGGACTTGGCAGATGTAAAT+CGG | + | chr4_4:3394675-3394694 | None:intergenic | 40.0% | |
| !! | GCATCGGCTGAAATGAATTA+CGG | - | chr4_4:3394709-3394728 | Msa0664390:intron | 40.0% |
| ! | GCTCACTCAGTGTTTCTTTT+GGG | - | chr4_4:3395076-3395095 | Msa0664390:intron | 40.0% |
| AAGTCTTCCATCTCCTTGTT+AGG | + | chr4_4:3395333-3395352 | None:intergenic | 40.0% | |
| ! | AGAACTCCATTGGAGTGTTA+GGG | + | chr4_4:3395550-3395569 | None:intergenic | 40.0% |
| GTGTTAAGACAGAACTCCAT+TGG | + | chr4_4:3395560-3395579 | None:intergenic | 40.0% | |
| ACTCAGCAGATAAACTTGAC+AGG | + | chr4_4:3395658-3395677 | None:intergenic | 40.0% | |
| TCGGTATAATGTTCGTAGAG+AGG | - | chr4_4:3395890-3395909 | Msa0664390:intron | 40.0% | |
| TTCGTAGAGAGGTAGCATTA+AGG | - | chr4_4:3394119-3394138 | Msa0664390:intron | 40.0% | |
| ! | GAACATTGACCCTTTTGGAT+TGG | - | chr4_4:3396057-3396076 | Msa0664390:intron | 40.0% |
| TAGCTTATGCGAAGCAACTT+AGG | - | chr4_4:3396089-3396108 | Msa0664390:intron | 40.0% | |
| !! | CTTTTGGGGAAATAGTGTTC+TGG | - | chr4_4:3396326-3396345 | Msa0664390:intron | 40.0% |
| TTAGCACTAATAAACACGGG+TGG | - | chr4_4:3396442-3396461 | Msa0664390:intron | 40.0% | |
| !! | AGTGTTGGGGTGGTTTTTAA+GGG | + | chr4_4:3396526-3396545 | None:intergenic | 40.0% |
| !! | TAGTGTTGGGGTGGTTTTTA+AGG | + | chr4_4:3396527-3396546 | None:intergenic | 40.0% |
| TAAAAACCACCCCAACACTA+AGG | - | chr4_4:3396527-3396546 | Msa0664390:intron | 40.0% | |
| !! | TGGTTTGTTCCTTAGTGTTG+GGG | + | chr4_4:3396539-3396558 | None:intergenic | 40.0% |
| !! | GTGGTTTGTTCCTTAGTGTT+GGG | + | chr4_4:3396540-3396559 | None:intergenic | 40.0% |
| !! | AGTGGTTTGTTCCTTAGTGT+TGG | + | chr4_4:3396541-3396560 | None:intergenic | 40.0% |
| AACACTAAGGAACAAACCAC+TGG | - | chr4_4:3396540-3396559 | Msa0664390:intron | 40.0% | |
| !! | GTGTGGTTTGTTGTTTAGGA+AGG | + | chr4_4:3396676-3396695 | None:intergenic | 40.0% |
| !!! | TTTTTAGGGTGCTGTTTGGT+GGG | + | chr4_4:3396716-3396735 | None:intergenic | 40.0% |
| !!! | CTCCTTAGTCTGTTGTTTTG+AGG | + | chr4_4:3396739-3396758 | None:intergenic | 40.0% |
| CAAAACAACAGACTAAGGAG+TGG | - | chr4_4:3396739-3396758 | Msa0664390:intron | 40.0% | |
| !! | TTCTAGCTCTGCCTTTCTTA+AGG | - | chr4_4:3397332-3397351 | Msa0664390:CDS | 40.0% |
| TGGACTTGGCAGATGTAAAT+CGG | + | chr4_4:3394675-3394694 | None:intergenic | 40.0% | |
| ATGAATTGCGGAACAAGTGA+AGG | - | chr4_4:3397584-3397603 | Msa0664390:intron | 40.0% | |
| CTGTGGGCAAATAAGGTAAA+CGG | - | chr4_4:3397917-3397936 | Msa0664390:intron | 40.0% | |
| TGTGGGCAAATAAGGTAAAC+GGG | - | chr4_4:3397918-3397937 | Msa0664390:intron | 40.0% | |
| ! | CCGAATTGGCTCAATATTAC+AGG | + | chr4_4:3398034-3398053 | None:intergenic | 40.0% |
| TATACGGACCAAAACCGAAT+TGG | + | chr4_4:3398048-3398067 | None:intergenic | 40.0% | |
| CTTCTTCTTCCTCTTGGTTT+AGG | - | chr4_4:3398195-3398214 | Msa0664390:CDS | 40.0% | |
| ACAATGAAGGGGAAGATGAA+TGG | + | chr4_4:3398226-3398245 | None:intergenic | 40.0% | |
| GACGAGAAGAAACAATGAAG+GGG | + | chr4_4:3398237-3398256 | None:intergenic | 40.0% | |
| GAGACGAGAAGAAACAATGA+AGG | + | chr4_4:3398239-3398258 | None:intergenic | 40.0% | |
| TCATCTTCTACTGAATCGGA+TGG | - | chr4_4:3398319-3398338 | Msa0664390:exon | 40.0% | |
| AACCCTCATGTTGGAGAGTT+GGG | + | chr4_4:3393879-3393898 | None:intergenic | 45.0% | |
| TAACCCTCATGTTGGAGAGT+TGG | + | chr4_4:3393880-3393899 | None:intergenic | 45.0% | |
| GGTATTCCACCCGATTTCAA+AGG | - | chr4_4:3393971-3393990 | Msa0664390:intron | 45.0% | |
| TCGGTGTAATGTTCGTAGAG+AGG | - | chr4_4:3394108-3394127 | Msa0664390:intron | 45.0% | |
| !! | AACAAGTTCACCGGCTTGTT+TGG | - | chr4_4:3394161-3394180 | Msa0664390:intron | 45.0% |
| GCAGACATCAGCAACTCATT+TGG | + | chr4_4:3394545-3394564 | None:intergenic | 45.0% | |
| AGACTCATCATGGTTGGACT+TGG | + | chr4_4:3394689-3394708 | None:intergenic | 45.0% | |
| CAACCATGATGAGTCTGCAT+CGG | - | chr4_4:3394693-3394712 | Msa0664390:intron | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+TGG | - | chr4_4:3394729-3394748 | Msa0664390:intron | 45.0% | |
| ! | GGTTTGATGGCAGACAATGA+TGG | - | chr4_4:3394742-3394761 | Msa0664390:intron | 45.0% |
| ! | CTGCCAACTATGGACTTGTT+TGG | + | chr4_4:3395011-3395030 | None:intergenic | 45.0% |
| GGTCAATGAACTGCCAACTA+TGG | + | chr4_4:3395021-3395040 | None:intergenic | 45.0% | |
| ! | GGCTCACTCAGTGTTTCTTT+TGG | - | chr4_4:3395075-3395094 | Msa0664390:intron | 45.0% |
| AACTGACCCTAACACTCCAA+TGG | - | chr4_4:3395541-3395560 | Msa0664390:intron | 45.0% | |
| ! | CAGAACTCCATTGGAGTGTT+AGG | + | chr4_4:3395551-3395570 | None:intergenic | 45.0% |
| CTGAAATGAGTTGCGAAACG+CGG | - | chr4_4:3395841-3395860 | Msa0664390:intron | 45.0% | |
| CAATCCGAACGAGTTCATAG+TGG | - | chr4_4:3396269-3396288 | Msa0664390:intron | 45.0% | |
| ACTGCCACTATGAACTCGTT+CGG | + | chr4_4:3396276-3396295 | None:intergenic | 45.0% | |
| ! | TAAGGGGTTTTTGTTCGAGC+CGG | + | chr4_4:3396509-3396528 | None:intergenic | 45.0% |
| !! | GTGTTGGGGTGGTTTTTAAG+GGG | + | chr4_4:3396525-3396544 | None:intergenic | 45.0% |
| ! | TTTGTTCCTTAGTGTTGGGG+TGG | + | chr4_4:3396536-3396555 | None:intergenic | 45.0% |
| ! | GTCATTACTTTAGGGACCAG+TGG | + | chr4_4:3396559-3396578 | None:intergenic | 45.0% |
| TGGTCCCTAAAGTAATGACG+CGG | - | chr4_4:3396560-3396579 | Msa0664390:intron | 45.0% | |
| !!! | TCTTTTTGGTGTGGTGCTGT+AGG | + | chr4_4:3396644-3396663 | None:intergenic | 45.0% |
| !! | ATGCTGCTGTCTTTTTGGTG+TGG | + | chr4_4:3396653-3396672 | None:intergenic | 45.0% |
| ! | GAAGGATGCTGCTGTCTTTT+TGG | + | chr4_4:3396658-3396677 | None:intergenic | 45.0% |
| !! | CTGCGTGTGGTTTGTTGTTT+AGG | + | chr4_4:3396680-3396699 | None:intergenic | 45.0% |
| CTAAACAACAAACCACACGC+AGG | - | chr4_4:3396678-3396697 | Msa0664390:intron | 45.0% | |
| !!! | GTTTTTAGGGTGCTGTTTGG+TGG | + | chr4_4:3396717-3396736 | None:intergenic | 45.0% |
| !!! | GAGGTTTTTAGGGTGCTGTT+TGG | + | chr4_4:3396720-3396739 | None:intergenic | 45.0% |
| TTGAAGTCCTCGTGATTGCT+TGG | + | chr4_4:3396910-3396929 | None:intergenic | 45.0% | |
| AGACTCATCATGGTTGGACT+TGG | + | chr4_4:3394689-3394708 | None:intergenic | 45.0% | |
| CAACCATGATGAGTCTGCAT+CGG | - | chr4_4:3394693-3394712 | Msa0664390:intron | 45.0% | |
| !! | GCATCGGCTGAAATGAATTG+CGG | - | chr4_4:3397572-3397591 | Msa0664390:intron | 45.0% |
| CGGAACAAGTGAAGGTTTGA+TGG | - | chr4_4:3394729-3394748 | Msa0664390:intron | 45.0% | |
| ! | AAGTCCACAAGCATTGCAGA+GGG | + | chr4_4:3397897-3397916 | None:intergenic | 45.0% |
| CAATGCTTGTGGACTTCTGT+GGG | - | chr4_4:3397901-3397920 | Msa0664390:intron | 45.0% | |
| TGGACTTCTGTGGGCAAATA+AGG | - | chr4_4:3397910-3397929 | Msa0664390:intron | 45.0% | |
| AGAGGAAGAAGAAGAATGCC+AGG | + | chr4_4:3398189-3398208 | None:intergenic | 45.0% | |
| GGCATTCTTCTTCTTCCTCT+TGG | - | chr4_4:3398189-3398208 | Msa0664390:CDS | 45.0% | |
| ATGGTCGAACCTAAACCAAG+AGG | + | chr4_4:3398207-3398226 | None:intergenic | 45.0% | |
| !!! | TTAATTTTAAATTACTAATA+AGG | - | chr4_4:3397032-3397051 | Msa0664390:intron | 5.0% |
| CTCCCAACTCTCCAACATGA+GGG | - | chr4_4:3393874-3393893 | Msa0664390:intron | 50.0% | |
| CGATGCAGACTCATCATGGT+TGG | + | chr4_4:3394695-3394714 | None:intergenic | 50.0% | |
| AGACTCGTCAAGGTTGGACT+TGG | + | chr4_4:3395814-3395833 | None:intergenic | 50.0% | |
| TGATGCAGACTCGTCAAGGT+TGG | + | chr4_4:3395820-3395839 | None:intergenic | 50.0% | |
| AATGAGTTGCGAAACGCGGA+AGG | - | chr4_4:3395845-3395864 | Msa0664390:intron | 50.0% | |
| AATCGGTTGCCACATGACAC+CGG | - | chr4_4:3396487-3396506 | Msa0664390:intron | 50.0% | |
| GGTCCCTAAAGTAATGACGC+GGG | - | chr4_4:3396561-3396580 | Msa0664390:intron | 50.0% | |
| AGGCCCGCGTCATTACTTTA+GGG | + | chr4_4:3396567-3396586 | None:intergenic | 50.0% | |
| TAGGCCCGCGTCATTACTTT+AGG | + | chr4_4:3396568-3396587 | None:intergenic | 50.0% | |
| !!! | TGTTTTGGGTGTTGACGCAG+GGG | + | chr4_4:3396615-3396634 | None:intergenic | 50.0% |
| !!! | CTGTTTTGGGTGTTGACGCA+GGG | + | chr4_4:3396616-3396635 | None:intergenic | 50.0% |
| !! | GCTGTAGGTTCGGCTGTTTT+GGG | + | chr4_4:3396629-3396648 | None:intergenic | 50.0% |
| ! | TGCTGTAGGTTCGGCTGTTT+TGG | + | chr4_4:3396630-3396649 | None:intergenic | 50.0% |
| !! | TTGGTGTGGTGCTGTAGGTT+CGG | + | chr4_4:3396639-3396658 | None:intergenic | 50.0% |
| ! | CTGTTTGGGCAGCGTTTTTG+GGG | + | chr4_4:3396772-3396791 | None:intergenic | 50.0% |
| ! | GCTGTTTGGGCAGCGTTTTT+GGG | + | chr4_4:3396773-3396792 | None:intergenic | 50.0% |
| !! | TGCTGTTTGGGCAGCGTTTT+TGG | + | chr4_4:3396774-3396793 | None:intergenic | 50.0% |
| ! | GTGTTGCTGTTCTGTACCTG+CGG | + | chr4_4:3396861-3396880 | None:intergenic | 50.0% |
| GGTACAGAACAGCAACACAG+AGG | - | chr4_4:3396863-3396882 | Msa0664390:intron | 50.0% | |
| ACAGAACAGCAACACAGAGG+AGG | - | chr4_4:3396866-3396885 | Msa0664390:intron | 50.0% | |
| GTGTTAAGGCAGCAGTGTCA+GGG | + | chr4_4:3397295-3397314 | None:intergenic | 50.0% | |
| CGATGCAGACTCATCATGGT+TGG | + | chr4_4:3394695-3394714 | None:intergenic | 50.0% | |
| ! | GGTTTGATGGCAGACAACGA+TGG | - | chr4_4:3397605-3397624 | Msa0664390:intron | 50.0% |
| ! | AGAAGTGCACGCCAATGATG+CGG | - | chr4_4:3397849-3397868 | Msa0664390:intron | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | + | chr4_4:3397890-3397909 | None:intergenic | 50.0% |
| AGAACCCTCTGCAATGCTTG+TGG | - | chr4_4:3397890-3397909 | Msa0664390:intron | 50.0% | |
| ! | GAAGTCCACAAGCATTGCAG+AGG | + | chr4_4:3397898-3397917 | None:intergenic | 50.0% |
| GCAATGCTTGTGGACTTCTG+TGG | - | chr4_4:3397900-3397919 | Msa0664390:intron | 50.0% | |
| GGAAGAAGAAGAATGCCAGG+TGG | + | chr4_4:3398186-3398205 | None:intergenic | 50.0% | |
| GTTGGAGAGTTGGGAGGCTT+TGG | + | chr4_4:3393870-3393889 | None:intergenic | 55.0% | |
| CCTCATGTTGGAGAGTTGGG+AGG | + | chr4_4:3393876-3393895 | None:intergenic | 55.0% | |
| CCTCCCAACTCTCCAACATG+AGG | - | chr4_4:3393873-3393892 | Msa0664390:intron | 55.0% | |
| CAGCCGATGCAGACTCATCA+TGG | + | chr4_4:3394699-3394718 | None:intergenic | 55.0% | |
| CAGCTGATGCAGACTCGTCA+AGG | + | chr4_4:3395824-3395843 | None:intergenic | 55.0% | |
| !! | TTGTTCGAGCCGGTGTCATG+TGG | + | chr4_4:3396499-3396518 | None:intergenic | 55.0% |
| ! | TTGACGCAGGGGTATGCATG+CGG | + | chr4_4:3396604-3396623 | None:intergenic | 55.0% |
| !!! | GCTGTTTTGGGTGTTGACGC+AGG | + | chr4_4:3396617-3396636 | None:intergenic | 55.0% |
| !! | TTAGGGTGCTGTTTGGTGGG+AGG | + | chr4_4:3396713-3396732 | None:intergenic | 55.0% |
| ! | AGCAGCAGTGGCTGCTGTTT+GGG | + | chr4_4:3396786-3396805 | None:intergenic | 55.0% |
| TCATGACAGTCCAGCAGCAG+TGG | + | chr4_4:3396798-3396817 | None:intergenic | 55.0% | |
| !! | CGTGATTGCTTGGTGCGCTA+AGG | + | chr4_4:3396900-3396919 | None:intergenic | 55.0% |
| TAGCGCACCAAGCAATCACG+AGG | - | chr4_4:3396900-3396919 | Msa0664390:intron | 55.0% | |
| GGTGTTAAGGCAGCAGTGTC+AGG | + | chr4_4:3397296-3397315 | None:intergenic | 55.0% | |
| CAGCCGATGCAGACTCATCA+TGG | + | chr4_4:3394699-3394718 | None:intergenic | 55.0% | |
| CAACAAACCACACGCAGGCC+TGG | - | chr4_4:3396683-3396702 | Msa0664390:intron | 60.0% | |
| ! | TGTTTGGTGGGAGGCTCTCC+AGG | + | chr4_4:3396704-3396723 | None:intergenic | 60.0% |
| CAGCAGCAGTGGCTGCTGTT+TGG | + | chr4_4:3396787-3396806 | None:intergenic | 60.0% | |
| CAAACAGCAGCCACTGCTGC+TGG | - | chr4_4:3396785-3396804 | Msa0664390:intron | 60.0% | |
| GCTGTTCTGTACCTGCGGTG+CGG | + | chr4_4:3396856-3396875 | None:intergenic | 60.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | + | chr4_4:3397863-3397882 | None:intergenic | 60.0% | |
| ATGATGCGGCGTGGACCTGA+AGG | - | chr4_4:3397863-3397882 | Msa0664390:intron | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | - | chr4_4:3397864-3397883 | Msa0664390:intron | 60.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | + | chr4_4:3397881-3397900 | None:intergenic | 60.0% | |
| CAGCGCTGCCACAGACAACC+TGG | - | chr4_4:3396830-3396849 | Msa0664390:intron | 65.0% | |
| TGCACGCCAATGATGCGGCG+TGG | - | chr4_4:3397854-3397873 | Msa0664390:intron | 65.0% | |
| AGGCTCTCCAGGCCTGCGTG+TGG | + | chr4_4:3396693-3396712 | None:intergenic | 70.0% | |
| CGGTGCGGCCAGGTTGTCTG+TGG | + | chr4_4:3396841-3396860 | None:intergenic | 70.0% | |
| AGACAACCTGGCCGCACCGC+AGG | - | chr4_4:3396842-3396861 | Msa0664390:intron | 70.0% | |
| TCTGTACCTGCGGTGCGGCC+AGG | + | chr4_4:3396851-3396870 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3393750 | 3398345 | 3393750 | ID=Msa0664390;Name=Msa0664390 |
| chr4_4 | mRNA | 3393750 | 3398345 | 3393750 | ID=Msa0664390-mRNA-1;Parent=Msa0664390;Name=Msa0664390-mRNA-1;_AED=0.27;_eAED=0.27;_QI=26|0.5|0.8|0.8|1|1|5|0|287 |
| chr4_4 | exon | 3393750 | 3393878 | 3393750 | ID=Msa0664390-mRNA-1:exon:1122;Parent=Msa0664390-mRNA-1 |
| chr4_4 | exon | 3394164 | 3394269 | 3394164 | ID=Msa0664390-mRNA-1:exon:1121;Parent=Msa0664390-mRNA-1 |
| chr4_4 | exon | 3394447 | 3394578 | 3394447 | ID=Msa0664390-mRNA-1:exon:1120;Parent=Msa0664390-mRNA-1 |
| chr4_4 | exon | 3397310 | 3397441 | 3397310 | ID=Msa0664390-mRNA-1:exon:1119;Parent=Msa0664390-mRNA-1 |
| chr4_4 | exon | 3397955 | 3398345 | 3397955 | ID=Msa0664390-mRNA-1:exon:1118;Parent=Msa0664390-mRNA-1 |
| chr4_4 | five_prime_UTR | 3398320 | 3398345 | 3398320 | ID=Msa0664390-mRNA-1:five_prime_utr;Parent=Msa0664390-mRNA-1 |
| chr4_4 | CDS | 3397955 | 3398319 | 3397955 | ID=Msa0664390-mRNA-1:cds;Parent=Msa0664390-mRNA-1 |
| chr4_4 | CDS | 3397310 | 3397441 | 3397310 | ID=Msa0664390-mRNA-1:cds;Parent=Msa0664390-mRNA-1 |
| chr4_4 | CDS | 3394447 | 3394578 | 3394447 | ID=Msa0664390-mRNA-1:cds;Parent=Msa0664390-mRNA-1 |
| chr4_4 | CDS | 3394164 | 3394269 | 3394164 | ID=Msa0664390-mRNA-1:cds;Parent=Msa0664390-mRNA-1 |
| chr4_4 | CDS | 3393750 | 3393878 | 3393750 | ID=Msa0664390-mRNA-1:cds;Parent=Msa0664390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
