Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665950 | XP_013454752.1 | 96.575 | 292 | 8 | 2 | 1 | 291 | 1 | 291 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665950 | sp|Q9S7T5|OFP14_ARATH | 35.577 | 312 | 147 | 10 | 1 | 280 | 1 | 290 | 2.63e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665950 | A0A072UI43 | 96.575 | 292 | 8 | 2 | 1 | 291 | 1 | 291 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0665950 | TF | OFP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665950 | MtrunA17_Chr4g0004341 | 96.575 | 292 | 8 | 2 | 1 | 291 | 1 | 291 | 0.0 | 563 |
| Msa0665950 | MtrunA17_Chr2g0331871 | 49.057 | 318 | 127 | 9 | 1 | 290 | 1 | 311 | 1.85e-84 | 256 |
| Msa0665950 | MtrunA17_Chr1g0185481 | 56.061 | 66 | 26 | 2 | 186 | 249 | 199 | 263 | 2.25e-15 | 74.3 |
| Msa0665950 | MtrunA17_Chr7g0259991 | 47.826 | 69 | 34 | 1 | 183 | 249 | 129 | 197 | 2.38e-13 | 67.8 |
| Msa0665950 | MtrunA17_Chr1g0205341 | 30.370 | 135 | 74 | 4 | 119 | 249 | 58 | 176 | 6.61e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0665950 | AT1G79960.1 | 35.577 | 312 | 147 | 10 | 1 | 280 | 1 | 290 | 2.67e-41 | 144 |
| Msa0665950 | AT4G14860.1 | 52.542 | 59 | 27 | 1 | 192 | 249 | 109 | 167 | 2.41e-13 | 67.4 |
| Msa0665950 | AT1G05420.1 | 34.343 | 99 | 63 | 1 | 153 | 249 | 117 | 215 | 7.05e-12 | 64.3 |
| Msa0665950 | AT1G05420.2 | 34.343 | 99 | 63 | 1 | 153 | 249 | 133 | 231 | 7.30e-12 | 64.3 |
Find 55 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTGACACGTGGCTTCT+CGG | 0.243442 | 4_4:-5856337 | Msa0665950:CDS |
| GAGACCAATCCATTTCTTAG+AGG | 0.317572 | 4_4:+5856665 | None:intergenic |
| TTCGTTTATCCTCTAAGAAA+TGG | 0.318720 | 4_4:-5856674 | Msa0665950:CDS |
| AAAGAGAAAGAAGGAGTTCT+AGG | 0.365664 | 4_4:+5856627 | None:intergenic |
| CGAACGCTCCGCGGCTTCCC+TGG | 0.369632 | 4_4:+5855967 | None:intergenic |
| AACACAACAACACAATTATC+AGG | 0.372043 | 4_4:+5856201 | None:intergenic |
| GGAACAATGAAAGTGTTGAT+TGG | 0.389592 | 4_4:-5856110 | Msa0665950:CDS |
| TGAAAATGAATTAACATTGA+AGG | 0.390896 | 4_4:+5856245 | None:intergenic |
| ACAAACACATTTGAAGAAAC+AGG | 0.393177 | 4_4:-5856297 | Msa0665950:CDS |
| AAGTGTTGATTGGGATTTCA+TGG | 0.402630 | 4_4:-5856100 | Msa0665950:CDS |
| CAGGGAAGCCGCGGAGCGTT+CGG | 0.404751 | 4_4:-5855966 | Msa0665950:CDS |
| GAACAATGAAAGTGTTGATT+GGG | 0.405122 | 4_4:-5856109 | Msa0665950:CDS |
| GCGTTCGGACGGTTAGGATT+GGG | 0.405374 | 4_4:-5855951 | Msa0665950:CDS |
| TGCTTCCACCGTTTCTTGCA+TGG | 0.412023 | 4_4:+5856140 | None:intergenic |
| TTTCTGACACGTGGCTTCTC+GGG | 0.419983 | 4_4:-5856336 | Msa0665950:CDS |
| CGGTTTCTTTGTCATCTTCG+AGG | 0.434566 | 4_4:+5856514 | None:intergenic |
| TATAGTGTTGTTGTTACAAT+CGG | 0.439894 | 4_4:+5856494 | None:intergenic |
| AGCGTTCGGACGGTTAGGAT+TGG | 0.441450 | 4_4:-5855952 | Msa0665950:CDS |
| GAATTAACTTTAGAATTTGA+AGG | 0.445602 | 4_4:-5855901 | Msa0665950:CDS |
| AAACGGTGGAAGCAAGGTTA+AGG | 0.446924 | 4_4:-5856131 | Msa0665950:CDS |
| CGCGGAGCGTTCGGACGGTT+AGG | 0.454970 | 4_4:-5855957 | Msa0665950:CDS |
| AGGATAAACGAAGTTGTGTT+GGG | 0.458162 | 4_4:+5856685 | None:intergenic |
| ACGAAGTTGTGTTGGGCGAT+TGG | 0.459516 | 4_4:+5856692 | None:intergenic |
| CGAAAATCATCATAAGGACT+TGG | 0.467264 | 4_4:+5856168 | None:intergenic |
| GAGACACCATTGGATCTTTG+TGG | 0.467751 | 4_4:-5856372 | Msa0665950:CDS |
| CTCTATCATGAGGAAGAGTT+CGG | 0.473366 | 4_4:-5855998 | Msa0665950:CDS |
| GATCTTCGAAAATCATCATA+AGG | 0.481189 | 4_4:+5856162 | None:intergenic |
| AGAAGATGATGAAGAAGAAG+AGG | 0.493363 | 4_4:-5856451 | Msa0665950:CDS |
| GAGGATAAACGAAGTTGTGT+TGG | 0.494329 | 4_4:+5856684 | None:intergenic |
| TGATAATTGTGTTGTTGTGT+TGG | 0.495366 | 4_4:-5856199 | Msa0665950:CDS |
| TGAAATTCTCGAAGAGAAAA+CGG | 0.503837 | 4_4:+5856547 | None:intergenic |
| TTATCCTCTAAGAAATGGAT+TGG | 0.514704 | 4_4:-5856669 | Msa0665950:CDS |
| AAGAGTTCGGAGACTAAACC+AGG | 0.517918 | 4_4:-5855985 | Msa0665950:CDS |
| TCGAAGATCCATGCAAGAAA+CGG | 0.523834 | 4_4:-5856148 | Msa0665950:CDS |
| TTCATCCAACGAGACACCAT+TGG | 0.547786 | 4_4:-5856382 | Msa0665950:CDS |
| TTAGGATTGGGACTGAGGTA+AGG | 0.548983 | 4_4:-5855939 | Msa0665950:CDS |
| TGCAAGAAACGGTGGAAGCA+AGG | 0.552104 | 4_4:-5856137 | Msa0665950:CDS |
| TTGTTGTCAAAAGAGAAAGA+AGG | 0.565659 | 4_4:+5856618 | None:intergenic |
| GACGGTTAGGATTGGGACTG+AGG | 0.576913 | 4_4:-5855944 | Msa0665950:CDS |
| TGTGTTTGTTGTTGTTGTCG+TGG | 0.578804 | 4_4:+5856311 | None:intergenic |
| AAGATCCAATGGTGTCTCGT+TGG | 0.579089 | 4_4:+5856377 | None:intergenic |
| AAGAAATGGATTGGTCTCAA+AGG | 0.580257 | 4_4:-5856660 | Msa0665950:CDS |
| CTCGTTGGATGAATCAAACA+AGG | 0.592816 | 4_4:+5856392 | None:intergenic |
| GAAGCCGCGGAGCGTTCGGA+CGG | 0.601979 | 4_4:-5855962 | Msa0665950:CDS |
| GTGACTTGATCTCTATCATG+AGG | 0.602549 | 4_4:-5856008 | Msa0665950:CDS |
| AGACTAAACCAGGGAAGCCG+CGG | 0.604751 | 4_4:-5855975 | Msa0665950:CDS |
| AATAGATTCTTTCTGACACG+TGG | 0.610420 | 4_4:-5856345 | Msa0665950:CDS |
| TTAGATCCACAAAGATCCAA+TGG | 0.615900 | 4_4:+5856366 | None:intergenic |
| ACGGTCAACATCTTCGAGTG+TGG | 0.632740 | 4_4:+5856566 | None:intergenic |
| TTGGATGAATCAAACAAGGT+GGG | 0.642701 | 4_4:+5856396 | None:intergenic |
| AAGATCCATGCAAGAAACGG+TGG | 0.645271 | 4_4:-5856145 | Msa0665950:CDS |
| GGATTGGGACTGAGGTAAGG+CGG | 0.658738 | 4_4:-5855936 | Msa0665950:CDS |
| GTTGGATGAATCAAACAAGG+TGG | 0.690695 | 4_4:+5856395 | None:intergenic |
| AGAGTTCGGAGACTAAACCA+GGG | 0.713620 | 4_4:-5855984 | Msa0665950:CDS |
| CTAACCGTCCGAACGCTCCG+CGG | 0.714481 | 4_4:+5855958 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAAAAATATTCAAAACA+AGG | - | chr4_4:5856215-5856234 | Msa0665950:CDS | 20.0% |
| !! | TGAAAATGAATTAACATTGA+AGG | + | chr4_4:5856393-5856412 | None:intergenic | 20.0% |
| !!! | CAATGTTAATTCATTTTCAA+AGG | - | chr4_4:5856394-5856413 | Msa0665950:CDS | 20.0% |
| !!! | GAATTAACTTTAGAATTTGA+AGG | - | chr4_4:5856734-5856753 | Msa0665950:CDS | 20.0% |
| !! | GAAGAAAAATATTCAAAACA+AGG | - | chr4_4:5856215-5856234 | Msa0665950:CDS | 20.0% |
| !! | TGAAAATGAATTAACATTGA+AGG | + | chr4_4:5856393-5856412 | None:intergenic | 20.0% |
| !!! | CAATGTTAATTCATTTTCAA+AGG | - | chr4_4:5856394-5856413 | Msa0665950:CDS | 20.0% |
| !!! | GAATTAACTTTAGAATTTGA+AGG | - | chr4_4:5856734-5856753 | Msa0665950:CDS | 20.0% |
| !! | TATAGTGTTGTTGTTACAAT+CGG | + | chr4_4:5856144-5856163 | None:intergenic | 25.0% |
| !! | GAATTAACATTGAAGGTTTT+TGG | + | chr4_4:5856386-5856405 | None:intergenic | 25.0% |
| !! | TGTTAATTCATTTTCAAAGG+AGG | - | chr4_4:5856397-5856416 | Msa0665950:CDS | 25.0% |
| !! | TATAGTGTTGTTGTTACAAT+CGG | + | chr4_4:5856144-5856163 | None:intergenic | 25.0% |
| !! | GAATTAACATTGAAGGTTTT+TGG | + | chr4_4:5856386-5856405 | None:intergenic | 25.0% |
| !! | TGTTAATTCATTTTCAAAGG+AGG | - | chr4_4:5856397-5856416 | Msa0665950:CDS | 25.0% |
| !! | AGGGATTTTTGAAAGTTCTT+TGG | + | chr4_4:5855897-5855916 | None:intergenic | 30.0% |
| ! | TTTGGAGAGGTAATTTTGAA+GGG | + | chr4_4:5855916-5855935 | None:intergenic | 30.0% |
| !! | TTTTGGAGAGGTAATTTTGA+AGG | + | chr4_4:5855917-5855936 | None:intergenic | 30.0% |
| ! | TTCGTTTATCCTCTAAGAAA+TGG | - | chr4_4:5855961-5855980 | Msa0665950:CDS | 30.0% |
| ! | TTATCCTCTAAGAAATGGAT+TGG | - | chr4_4:5855966-5855985 | Msa0665950:CDS | 30.0% |
| TTGTTGTCAAAAGAGAAAGA+AGG | + | chr4_4:5856020-5856039 | None:intergenic | 30.0% | |
| TGAAATTCTCGAAGAGAAAA+CGG | + | chr4_4:5856091-5856110 | None:intergenic | 30.0% | |
| ACAAACACATTTGAAGAAAC+AGG | - | chr4_4:5856338-5856357 | Msa0665950:CDS | 30.0% | |
| AACACAACAACACAATTATC+AGG | + | chr4_4:5856437-5856456 | None:intergenic | 30.0% | |
| ! | TGATAATTGTGTTGTTGTGT+TGG | - | chr4_4:5856436-5856455 | Msa0665950:CDS | 30.0% |
| GATCTTCGAAAATCATCATA+AGG | + | chr4_4:5856476-5856495 | None:intergenic | 30.0% | |
| !! | GAACAATGAAAGTGTTGATT+GGG | - | chr4_4:5856526-5856545 | Msa0665950:CDS | 30.0% |
| !! | AGGGATTTTTGAAAGTTCTT+TGG | + | chr4_4:5855897-5855916 | None:intergenic | 30.0% |
| ! | TTTGGAGAGGTAATTTTGAA+GGG | + | chr4_4:5855916-5855935 | None:intergenic | 30.0% |
| !! | TTTTGGAGAGGTAATTTTGA+AGG | + | chr4_4:5855917-5855936 | None:intergenic | 30.0% |
| ! | TTCGTTTATCCTCTAAGAAA+TGG | - | chr4_4:5855961-5855980 | Msa0665950:CDS | 30.0% |
| ! | TTATCCTCTAAGAAATGGAT+TGG | - | chr4_4:5855966-5855985 | Msa0665950:CDS | 30.0% |
| TTGTTGTCAAAAGAGAAAGA+AGG | + | chr4_4:5856020-5856039 | None:intergenic | 30.0% | |
| TGAAATTCTCGAAGAGAAAA+CGG | + | chr4_4:5856091-5856110 | None:intergenic | 30.0% | |
| ACAAACACATTTGAAGAAAC+AGG | - | chr4_4:5856338-5856357 | Msa0665950:CDS | 30.0% | |
| AACACAACAACACAATTATC+AGG | + | chr4_4:5856437-5856456 | None:intergenic | 30.0% | |
| ! | TGATAATTGTGTTGTTGTGT+TGG | - | chr4_4:5856436-5856455 | Msa0665950:CDS | 30.0% |
| GATCTTCGAAAATCATCATA+AGG | + | chr4_4:5856476-5856495 | None:intergenic | 30.0% | |
| !! | GAACAATGAAAGTGTTGATT+GGG | - | chr4_4:5856526-5856545 | Msa0665950:CDS | 30.0% |
| !!! | GATTGGTTTTGATTTTGGAG+AGG | + | chr4_4:5855929-5855948 | None:intergenic | 35.0% |
| AGGATAAACGAAGTTGTGTT+GGG | + | chr4_4:5855953-5855972 | None:intergenic | 35.0% | |
| !! | AAGAAATGGATTGGTCTCAA+AGG | - | chr4_4:5855975-5855994 | Msa0665950:CDS | 35.0% |
| AAAGAGAAAGAAGGAGTTCT+AGG | + | chr4_4:5856011-5856030 | None:intergenic | 35.0% | |
| CAAGAAAAACAACGACAACA+AGG | - | chr4_4:5856037-5856056 | Msa0665950:CDS | 35.0% | |
| AGAAGATGATGAAGAAGAAG+AGG | - | chr4_4:5856184-5856203 | Msa0665950:CDS | 35.0% | |
| TTGGATGAATCAAACAAGGT+GGG | + | chr4_4:5856242-5856261 | None:intergenic | 35.0% | |
| TTAGATCCACAAAGATCCAA+TGG | + | chr4_4:5856272-5856291 | None:intergenic | 35.0% | |
| AATAGATTCTTTCTGACACG+TGG | - | chr4_4:5856290-5856309 | Msa0665950:CDS | 35.0% | |
| CGAAAATCATCATAAGGACT+TGG | + | chr4_4:5856470-5856489 | None:intergenic | 35.0% | |
| !! | GGAACAATGAAAGTGTTGAT+TGG | - | chr4_4:5856525-5856544 | Msa0665950:CDS | 35.0% |
| !! | AAGTGTTGATTGGGATTTCA+TGG | - | chr4_4:5856535-5856554 | Msa0665950:CDS | 35.0% |
| !!! | GATTGGTTTTGATTTTGGAG+AGG | + | chr4_4:5855929-5855948 | None:intergenic | 35.0% |
| AGGATAAACGAAGTTGTGTT+GGG | + | chr4_4:5855953-5855972 | None:intergenic | 35.0% | |
| !! | AAGAAATGGATTGGTCTCAA+AGG | - | chr4_4:5855975-5855994 | Msa0665950:CDS | 35.0% |
| AAAGAGAAAGAAGGAGTTCT+AGG | + | chr4_4:5856011-5856030 | None:intergenic | 35.0% | |
| CAAGAAAAACAACGACAACA+AGG | - | chr4_4:5856037-5856056 | Msa0665950:CDS | 35.0% | |
| AGAAGATGATGAAGAAGAAG+AGG | - | chr4_4:5856184-5856203 | Msa0665950:CDS | 35.0% | |
| TTGGATGAATCAAACAAGGT+GGG | + | chr4_4:5856242-5856261 | None:intergenic | 35.0% | |
| TTAGATCCACAAAGATCCAA+TGG | + | chr4_4:5856272-5856291 | None:intergenic | 35.0% | |
| AATAGATTCTTTCTGACACG+TGG | - | chr4_4:5856290-5856309 | Msa0665950:CDS | 35.0% | |
| CGAAAATCATCATAAGGACT+TGG | + | chr4_4:5856470-5856489 | None:intergenic | 35.0% | |
| !! | GGAACAATGAAAGTGTTGAT+TGG | - | chr4_4:5856525-5856544 | Msa0665950:CDS | 35.0% |
| !! | AAGTGTTGATTGGGATTTCA+TGG | - | chr4_4:5856535-5856554 | Msa0665950:CDS | 35.0% |
| !!! | TGGGCGATTGGTTTTGATTT+TGG | + | chr4_4:5855934-5855953 | None:intergenic | 40.0% |
| GAGGATAAACGAAGTTGTGT+TGG | + | chr4_4:5855954-5855973 | None:intergenic | 40.0% | |
| GAGACCAATCCATTTCTTAG+AGG | + | chr4_4:5855973-5855992 | None:intergenic | 40.0% | |
| GTTGGATGAATCAAACAAGG+TGG | + | chr4_4:5856243-5856262 | None:intergenic | 40.0% | |
| CTCGTTGGATGAATCAAACA+AGG | + | chr4_4:5856246-5856265 | None:intergenic | 40.0% | |
| !! | TGTGTTTGTTGTTGTTGTCG+TGG | + | chr4_4:5856327-5856346 | None:intergenic | 40.0% |
| TCGAAGATCCATGCAAGAAA+CGG | - | chr4_4:5856487-5856506 | Msa0665950:CDS | 40.0% | |
| GTGACTTGATCTCTATCATG+AGG | - | chr4_4:5856627-5856646 | Msa0665950:CDS | 40.0% | |
| CTCTATCATGAGGAAGAGTT+CGG | - | chr4_4:5856637-5856656 | Msa0665950:CDS | 40.0% | |
| !!! | TGGGCGATTGGTTTTGATTT+TGG | + | chr4_4:5855934-5855953 | None:intergenic | 40.0% |
| GAGGATAAACGAAGTTGTGT+TGG | + | chr4_4:5855954-5855973 | None:intergenic | 40.0% | |
| GAGACCAATCCATTTCTTAG+AGG | + | chr4_4:5855973-5855992 | None:intergenic | 40.0% | |
| GTTGGATGAATCAAACAAGG+TGG | + | chr4_4:5856243-5856262 | None:intergenic | 40.0% | |
| CTCGTTGGATGAATCAAACA+AGG | + | chr4_4:5856246-5856265 | None:intergenic | 40.0% | |
| !! | TGTGTTTGTTGTTGTTGTCG+TGG | + | chr4_4:5856327-5856346 | None:intergenic | 40.0% |
| TCGAAGATCCATGCAAGAAA+CGG | - | chr4_4:5856487-5856506 | Msa0665950:CDS | 40.0% | |
| GTGACTTGATCTCTATCATG+AGG | - | chr4_4:5856627-5856646 | Msa0665950:CDS | 40.0% | |
| CTCTATCATGAGGAAGAGTT+CGG | - | chr4_4:5856637-5856656 | Msa0665950:CDS | 40.0% | |
| CGGTTTCTTTGTCATCTTCG+AGG | + | chr4_4:5856124-5856143 | None:intergenic | 45.0% | |
| TTCATCCAACGAGACACCAT+TGG | - | chr4_4:5856253-5856272 | Msa0665950:CDS | 45.0% | |
| AAGATCCAATGGTGTCTCGT+TGG | + | chr4_4:5856261-5856280 | None:intergenic | 45.0% | |
| GAGACACCATTGGATCTTTG+TGG | - | chr4_4:5856263-5856282 | Msa0665950:CDS | 45.0% | |
| AAGATCCATGCAAGAAACGG+TGG | - | chr4_4:5856490-5856509 | Msa0665950:CDS | 45.0% | |
| AAACGGTGGAAGCAAGGTTA+AGG | - | chr4_4:5856504-5856523 | Msa0665950:CDS | 45.0% | |
| AAGAGTTCGGAGACTAAACC+AGG | - | chr4_4:5856650-5856669 | Msa0665950:CDS | 45.0% | |
| AGAGTTCGGAGACTAAACCA+GGG | - | chr4_4:5856651-5856670 | Msa0665950:CDS | 45.0% | |
| TTAGGATTGGGACTGAGGTA+AGG | - | chr4_4:5856696-5856715 | Msa0665950:CDS | 45.0% | |
| CGGTTTCTTTGTCATCTTCG+AGG | + | chr4_4:5856124-5856143 | None:intergenic | 45.0% | |
| TTCATCCAACGAGACACCAT+TGG | - | chr4_4:5856253-5856272 | Msa0665950:CDS | 45.0% | |
| AAGATCCAATGGTGTCTCGT+TGG | + | chr4_4:5856261-5856280 | None:intergenic | 45.0% | |
| GAGACACCATTGGATCTTTG+TGG | - | chr4_4:5856263-5856282 | Msa0665950:CDS | 45.0% | |
| AAGATCCATGCAAGAAACGG+TGG | - | chr4_4:5856490-5856509 | Msa0665950:CDS | 45.0% | |
| AAACGGTGGAAGCAAGGTTA+AGG | - | chr4_4:5856504-5856523 | Msa0665950:CDS | 45.0% | |
| AAGAGTTCGGAGACTAAACC+AGG | - | chr4_4:5856650-5856669 | Msa0665950:CDS | 45.0% | |
| AGAGTTCGGAGACTAAACCA+GGG | - | chr4_4:5856651-5856670 | Msa0665950:CDS | 45.0% | |
| TTAGGATTGGGACTGAGGTA+AGG | - | chr4_4:5856696-5856715 | Msa0665950:CDS | 45.0% | |
| ACGAAGTTGTGTTGGGCGAT+TGG | + | chr4_4:5855946-5855965 | None:intergenic | 50.0% | |
| ACGGTCAACATCTTCGAGTG+TGG | + | chr4_4:5856072-5856091 | None:intergenic | 50.0% | |
| CTTTCTGACACGTGGCTTCT+CGG | - | chr4_4:5856298-5856317 | Msa0665950:CDS | 50.0% | |
| TTTCTGACACGTGGCTTCTC+GGG | - | chr4_4:5856299-5856318 | Msa0665950:CDS | 50.0% | |
| TGCTTCCACCGTTTCTTGCA+TGG | + | chr4_4:5856498-5856517 | None:intergenic | 50.0% | |
| TGCAAGAAACGGTGGAAGCA+AGG | - | chr4_4:5856498-5856517 | Msa0665950:CDS | 50.0% | |
| ACGAAGTTGTGTTGGGCGAT+TGG | + | chr4_4:5855946-5855965 | None:intergenic | 50.0% | |
| ACGGTCAACATCTTCGAGTG+TGG | + | chr4_4:5856072-5856091 | None:intergenic | 50.0% | |
| CTTTCTGACACGTGGCTTCT+CGG | - | chr4_4:5856298-5856317 | Msa0665950:CDS | 50.0% | |
| TTTCTGACACGTGGCTTCTC+GGG | - | chr4_4:5856299-5856318 | Msa0665950:CDS | 50.0% | |
| TGCTTCCACCGTTTCTTGCA+TGG | + | chr4_4:5856498-5856517 | None:intergenic | 50.0% | |
| TGCAAGAAACGGTGGAAGCA+AGG | - | chr4_4:5856498-5856517 | Msa0665950:CDS | 50.0% | |
| AGACTAAACCAGGGAAGCCG+CGG | - | chr4_4:5856660-5856679 | Msa0665950:CDS | 55.0% | |
| AGCGTTCGGACGGTTAGGAT+TGG | - | chr4_4:5856683-5856702 | Msa0665950:CDS | 55.0% | |
| GCGTTCGGACGGTTAGGATT+GGG | - | chr4_4:5856684-5856703 | Msa0665950:CDS | 55.0% | |
| GACGGTTAGGATTGGGACTG+AGG | - | chr4_4:5856691-5856710 | Msa0665950:CDS | 55.0% | |
| GGATTGGGACTGAGGTAAGG+CGG | - | chr4_4:5856699-5856718 | Msa0665950:CDS | 55.0% | |
| AGACTAAACCAGGGAAGCCG+CGG | - | chr4_4:5856660-5856679 | Msa0665950:CDS | 55.0% | |
| AGCGTTCGGACGGTTAGGAT+TGG | - | chr4_4:5856683-5856702 | Msa0665950:CDS | 55.0% | |
| GCGTTCGGACGGTTAGGATT+GGG | - | chr4_4:5856684-5856703 | Msa0665950:CDS | 55.0% | |
| GACGGTTAGGATTGGGACTG+AGG | - | chr4_4:5856691-5856710 | Msa0665950:CDS | 55.0% | |
| GGATTGGGACTGAGGTAAGG+CGG | - | chr4_4:5856699-5856718 | Msa0665950:CDS | 55.0% | |
| CTAACCGTCCGAACGCTCCG+CGG | + | chr4_4:5856680-5856699 | None:intergenic | 65.0% | |
| CTAACCGTCCGAACGCTCCG+CGG | + | chr4_4:5856680-5856699 | None:intergenic | 65.0% | |
| ! | CAGGGAAGCCGCGGAGCGTT+CGG | - | chr4_4:5856669-5856688 | Msa0665950:CDS | 70.0% |
| ! | GAAGCCGCGGAGCGTTCGGA+CGG | - | chr4_4:5856673-5856692 | Msa0665950:CDS | 70.0% |
| ! | CGCGGAGCGTTCGGACGGTT+AGG | - | chr4_4:5856678-5856697 | Msa0665950:CDS | 70.0% |
| ! | CAGGGAAGCCGCGGAGCGTT+CGG | - | chr4_4:5856669-5856688 | Msa0665950:CDS | 70.0% |
| ! | GAAGCCGCGGAGCGTTCGGA+CGG | - | chr4_4:5856673-5856692 | Msa0665950:CDS | 70.0% |
| ! | CGCGGAGCGTTCGGACGGTT+AGG | - | chr4_4:5856678-5856697 | Msa0665950:CDS | 70.0% |
| CGAACGCTCCGCGGCTTCCC+TGG | + | chr4_4:5856671-5856690 | None:intergenic | 75.0% | |
| CGAACGCTCCGCGGCTTCCC+TGG | + | chr4_4:5856671-5856690 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 5855891 | 5856766 | 5855891 | ID=Msa0665950;Name=Msa0665950 |
| chr4_4 | mRNA | 5855891 | 5856766 | 5855891 | ID=Msa0665950-mRNA-1;Parent=Msa0665950;Name=Msa0665950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|291 |
| chr4_4 | exon | 5855891 | 5856766 | 5855891 | ID=Msa0665950-mRNA-1:exon:1871;Parent=Msa0665950-mRNA-1 |
| chr4_4 | CDS | 5855891 | 5856766 | 5855891 | ID=Msa0665950-mRNA-1:cds;Parent=Msa0665950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
