AlfalfaGEDB | Msa0666810

M. sativa cultivar zhongmu-4 / Msa0666810

KEGG: -
GO: GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0666810	MCH92448.1	92.361	144	10	1	1	144	61	203	1.45e-79	243

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0666810	sp\|Q9SCT4\|IMK2_ARATH	76.190	126	29	1	1	126	686	810	7.30e-59	198

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0666810	A0A392N0G7	92.361	144	10	1	1	144	61	203	6.91e-80	243

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0666810	MtrunA17_Chr4g0005201	94.444	144	7	1	1	144	652	794	2.79e-80	251
Msa0666810	MtrunA17_Chr5g0437741	72.222	144	39	1	1	144	644	786	7.29e-64	207
Msa0666810	MtrunA17_Chr4g0005221	70.000	100	29	1	46	144	449	548	2.26e-39	139
Msa0666810	MtrunA17_Chr6g0478621	49.550	111	51	3	17	124	540	648	6.22e-27	104
Msa0666810	MtrunA17_Chr4g0062911	48.649	111	52	3	17	124	509	617	5.96e-26	102
Msa0666810	MtrunA17_Chr5g0432851	46.281	121	59	4	8	124	509	627	9.03e-26	101
Msa0666810	MtrunA17_Chr7g0245171	46.847	111	54	3	17	124	498	606	2.00e-25	100
Msa0666810	MtrunA17_Chr8g0393211	45.946	111	55	3	17	124	537	645	4.13e-25	99.8
Msa0666810	MtrunA17_Chr3g0128551	46.364	110	56	2	17	124	506	614	5.29e-25	99.4
Msa0666810	MtrunA17_Chr3g0108301	46.847	111	54	3	17	124	518	626	6.11e-25	99.4

Showing 1 to 10 of 117 entries

Previous1 2 3 4 5…12Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0666810	AT3G51740.1	76.190	126	29	1	1	126	686	810	7.42e-60	198
Msa0666810	AT3G08680.1	46.957	115	57	2	15	126	503	616	3.12e-28	108
Msa0666810	AT3G08680.2	46.957	115	57	2	15	126	503	616	3.12e-28	108
Msa0666810	AT2G26730.1	45.038	131	63	4	17	144	511	635	3.82e-28	108
Msa0666810	AT5G58300.3	44.444	117	62	2	10	124	514	629	3.33e-25	100
Msa0666810	AT5G58300.1	44.444	117	62	2	10	124	514	629	3.33e-25	100
Msa0666810	AT5G58300.2	44.444	117	62	2	10	124	514	629	3.33e-25	100
Msa0666810	AT5G05160.1	40.678	118	64	2	12	124	500	616	1.03e-23	96.3
Msa0666810	AT3G24660.1	42.308	130	71	2	1	126	525	654	2.55e-23	95.1
Msa0666810	AT1G68400.1	42.647	136	71	3	13	143	522	655	2.63e-23	95.1

Showing 1 to 10 of 110 entries

Previous1 2 3 4 5…11Next

Find 33 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACGCTGAGGCTGTAAACGT+CGG	0.692624	4_4:-6939284	None:intergenic
AAGTCTCGGATACAATGCAC+CGG	0.639160	4_4:+6939228	Msa0666810:CDS
ACAATGGATGCAACATATTG+AGG	0.461356	4_4:-6939370	None:intergenic
ACCAACATCATTGCTACAGC+AGG	0.542435	4_4:+6939205	Msa0666810:CDS
ACTTGAACTTCGACCAATAC+TGG	0.374616	4_4:-6939562	None:intergenic
AGAAGTTCATCTCCTATCGT+TGG	0.555851	4_4:-6939445	None:intergenic
AGAGGAGATTATGCCAGTAT+TGG	0.496422	4_4:+6939549	Msa0666810:CDS
AGGTTCAAACAGATGAATAA+AGG	0.376118	4_4:+6939602	Msa0666810:CDS
AGTTGATGATGATGGAGCAA+AGG	0.582416	4_4:+6939582	Msa0666810:CDS
ATGAGGGATGGACCAACGAT+AGG	0.605785	4_4:+6939433	Msa0666810:CDS

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CATCCATTGTTAAAGAAGAA+TGG	+	chr4_4:6939383-6939402	Msa0666810:CDS	30.0%
TGTCCATTCTTCTTTAACAA+TGG	-	chr4_4:6939389-6939408	None:intergenic	30.0%
TTAATAACTGGTAAACCACC+AGG	+	chr4_4:6939322-6939341	Msa0666810:CDS	35.0%
ACAATGGATGCAACATATTG+AGG	-	chr4_4:6939373-6939392	None:intergenic	35.0%
TGTAGCAATGATGTTGGTGT+TGG	-	chr4_4:6939203-6939222	None:intergenic	40.0%
AGAAGTTCATCTCCTATCGT+TGG	-	chr4_4:6939448-6939467	None:intergenic	40.0%
TTAACTTCAGGCCTAGCAAA+AGG	-	chr4_4:6939511-6939530	None:intergenic	40.0%
AGAGGAGATTATGCCAGTAT+TGG	+	chr4_4:6939549-6939568	Msa0666810:CDS	40.0%
ACTTGAACTTCGACCAATAC+TGG	-	chr4_4:6939565-6939584	None:intergenic	40.0%
ACCAACATCATTGCTACAGC+AGG	+	chr4_4:6939205-6939224	Msa0666810:CDS	45.0%

Showing 1 to 10 of 35 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	6939187	6939621	6939187	ID=Msa0666810;Name=Msa0666810
chr4_4	mRNA	6939187	6939621	6939187	ID=Msa0666810-mRNA-1;Parent=Msa0666810;Name=Msa0666810-mRNA-1;_AED=0.00;_eAED=0.10;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|144
chr4_4	exon	6939187	6939621	6939187	ID=Msa0666810-mRNA-1:exon:2240;Parent=Msa0666810-mRNA-1
chr4_4	CDS	6939187	6939621	6939187	ID=Msa0666810-mRNA-1:cds;Parent=Msa0666810-mRNA-1

Gene Sequence

>Msa0666810

ATGACAACTTCAGCCAACACCAACATCATTGCTACAGCAGGAAGTCTCGGATACAATGCACCGGAGCTTTCAAAGACAAAGAAACCTACCACAAAGACCGACGTTTACAGCCTCAGCGTTATTCTTTTGGAGCTTTTAATAACTGGTAAACCACCAGGAGAACCAACAAATGGCATAGACTTGCCTCAATATGTTGCATCCATTGTTAAAGAAGAATGGACAAATGAAGTGTTTGATTTGGAACTCATGAGGGATGGACCAACGATAGGAGATGAACTTCTTAATACATTGAAATTAGCTTTGCATTGTGTTGATCCATCACCTTTTGCTAGGCCTGAAGTTAAACAAGTTTTGCAACAGTTAGAGGAGATTATGCCAGTATTGGTCGAAGTTCAAGTTGATGATGATGGAGCAAAGGTTCAAACAGATGAATAA

Protein sequence

>Msa0666810

MTTSANTNIIATAGSLGYNAPELSKTKKPTTKTDVYSLSVILLELLITGKPPGEPTNGIDLPQYVASIVKEEWTNEVFDLELMRDGPTIGDELLNTLKLALHCVDPSPFARPEVKQVLQQLEEIMPVLVEVQVDDDGAKVQTDE*