Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666880 | XP_024642129.1 | 98.031 | 254 | 5 | 0 | 1 | 254 | 1 | 254 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666880 | sp|Q6NQJ7|FRS4_ARATH | 37.008 | 254 | 152 | 3 | 1 | 252 | 1 | 248 | 2.49e-48 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666880 | A0A2K3N9Z9 | 86.905 | 252 | 33 | 0 | 1 | 252 | 1 | 252 | 5.22e-162 | 476 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0666880 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666880 | MtrunA17_Chr2g0296781 | 80.556 | 252 | 49 | 0 | 1 | 252 | 1 | 252 | 6.29e-152 | 440 |
| Msa0666880 | MtrunA17_Chr1g0196541 | 65.079 | 252 | 88 | 0 | 1 | 252 | 1 | 252 | 1.18e-120 | 360 |
| Msa0666880 | MtrunA17_Chr6g0477261 | 92.199 | 141 | 11 | 0 | 112 | 252 | 1 | 141 | 4.31e-92 | 285 |
| Msa0666880 | MtrunA17_Chr5g0441581 | 48.627 | 255 | 118 | 4 | 1 | 252 | 36 | 280 | 1.00e-70 | 229 |
| Msa0666880 | MtrunA17_Chr2g0291591 | 39.918 | 243 | 142 | 2 | 12 | 252 | 79 | 319 | 1.85e-52 | 179 |
| Msa0666880 | MtrunA17_Chr2g0329031 | 35.798 | 257 | 150 | 5 | 1 | 252 | 18 | 264 | 4.63e-45 | 160 |
| Msa0666880 | MtrunA17_Chr5g0448761 | 34.091 | 264 | 161 | 7 | 1 | 252 | 64 | 326 | 1.43e-43 | 157 |
| Msa0666880 | MtrunA17_Chr1g0202341 | 35.361 | 263 | 152 | 6 | 1 | 252 | 55 | 310 | 2.52e-43 | 155 |
| Msa0666880 | MtrunA17_Chr2g0291581 | 35.686 | 255 | 148 | 5 | 1 | 252 | 75 | 316 | 4.75e-42 | 152 |
| Msa0666880 | MtrunA17_Chr1g0207551 | 32.283 | 254 | 170 | 1 | 1 | 252 | 38 | 291 | 2.58e-41 | 150 |
| Msa0666880 | MtrunA17_Chr3g0080351 | 33.829 | 269 | 138 | 5 | 1 | 252 | 80 | 325 | 3.86e-40 | 147 |
| Msa0666880 | MtrunA17_Chr7g0258861 | 30.888 | 259 | 172 | 4 | 1 | 252 | 14 | 272 | 1.06e-38 | 137 |
| Msa0666880 | MtrunA17_Chr8g0363841 | 35.547 | 256 | 156 | 5 | 4 | 252 | 24 | 277 | 5.20e-37 | 137 |
| Msa0666880 | MtrunA17_Chr5g0440451 | 32.374 | 278 | 145 | 8 | 1 | 252 | 47 | 307 | 1.56e-35 | 134 |
| Msa0666880 | MtrunA17_Chr6g0476431 | 63.953 | 86 | 31 | 0 | 1 | 86 | 1 | 86 | 3.07e-34 | 119 |
| Msa0666880 | MtrunA17_Chr2g0324011 | 28.846 | 260 | 173 | 5 | 1 | 252 | 14 | 269 | 2.98e-32 | 124 |
| Msa0666880 | MtrunA17_Chr2g0287651 | 30.000 | 260 | 175 | 4 | 1 | 253 | 79 | 338 | 2.06e-30 | 119 |
| Msa0666880 | MtrunA17_Chr3g0118611 | 54.023 | 87 | 40 | 0 | 166 | 252 | 118 | 204 | 9.18e-28 | 111 |
| Msa0666880 | MtrunA17_Chr3g0082121 | 32.955 | 264 | 150 | 11 | 1 | 252 | 47 | 295 | 1.96e-27 | 110 |
| Msa0666880 | MtrunA17_Chr5g0448511 | 48.485 | 99 | 50 | 1 | 154 | 252 | 1 | 98 | 2.79e-26 | 107 |
| Msa0666880 | MtrunA17_Chr1g0203721 | 29.344 | 259 | 172 | 5 | 3 | 252 | 69 | 325 | 6.92e-26 | 106 |
| Msa0666880 | MtrunA17_Chr1g0203051 | 28.685 | 251 | 166 | 7 | 11 | 252 | 93 | 339 | 3.21e-25 | 104 |
| Msa0666880 | MtrunA17_Chr1g0198761 | 29.259 | 270 | 168 | 8 | 2 | 252 | 52 | 317 | 4.05e-25 | 103 |
| Msa0666880 | MtrunA17_Chr2g0276841 | 28.736 | 261 | 156 | 10 | 12 | 252 | 85 | 335 | 1.82e-24 | 102 |
| Msa0666880 | MtrunA17_Chr6g0458391 | 29.502 | 261 | 153 | 8 | 1 | 252 | 229 | 467 | 2.46e-24 | 101 |
| Msa0666880 | MtrunA17_Chr5g0431001 | 28.413 | 271 | 169 | 7 | 2 | 252 | 66 | 331 | 9.68e-23 | 96.7 |
| Msa0666880 | MtrunA17_Chr1g0164591 | 35.484 | 186 | 101 | 9 | 74 | 252 | 2 | 175 | 1.02e-21 | 92.0 |
| Msa0666880 | MtrunA17_Chr2g0287061 | 30.040 | 253 | 140 | 8 | 3 | 252 | 189 | 407 | 7.27e-21 | 91.7 |
| Msa0666880 | MtrunA17_Chr6g0451441 | 31.500 | 200 | 121 | 6 | 1 | 189 | 91 | 285 | 8.61e-21 | 90.9 |
| Msa0666880 | MtrunA17_Chr2g0294841 | 25.556 | 270 | 174 | 8 | 3 | 252 | 51 | 313 | 1.12e-15 | 76.3 |
| Msa0666880 | MtrunA17_Chr2g0290391 | 23.273 | 275 | 183 | 11 | 1 | 252 | 55 | 324 | 7.62e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0666880 | AT1G76320.3 | 37.008 | 254 | 152 | 3 | 1 | 252 | 1 | 248 | 1.39e-49 | 173 |
| Msa0666880 | AT1G76320.2 | 37.008 | 254 | 152 | 3 | 1 | 252 | 1 | 248 | 2.32e-49 | 173 |
| Msa0666880 | AT1G76320.1 | 37.008 | 254 | 152 | 3 | 1 | 252 | 1 | 248 | 2.53e-49 | 172 |
| Msa0666880 | AT1G76320.4 | 37.008 | 254 | 152 | 3 | 1 | 252 | 1 | 248 | 2.53e-49 | 172 |
| Msa0666880 | AT4G15090.1 | 35.019 | 257 | 162 | 3 | 1 | 252 | 55 | 311 | 2.34e-46 | 165 |
| Msa0666880 | AT4G15090.5 | 35.019 | 257 | 162 | 3 | 1 | 252 | 55 | 311 | 2.34e-46 | 165 |
| Msa0666880 | AT4G15090.3 | 35.019 | 257 | 162 | 3 | 1 | 252 | 55 | 311 | 2.34e-46 | 165 |
| Msa0666880 | AT4G15090.2 | 35.019 | 257 | 162 | 3 | 1 | 252 | 55 | 311 | 2.34e-46 | 165 |
| Msa0666880 | AT4G15090.4 | 35.019 | 257 | 162 | 3 | 1 | 252 | 55 | 311 | 2.34e-46 | 165 |
| Msa0666880 | AT4G38180.1 | 31.538 | 260 | 169 | 4 | 1 | 252 | 77 | 335 | 7.56e-42 | 152 |
| Msa0666880 | AT3G22170.2 | 32.342 | 269 | 143 | 4 | 1 | 252 | 74 | 320 | 5.39e-39 | 144 |
| Msa0666880 | AT3G22170.1 | 32.342 | 269 | 143 | 4 | 1 | 252 | 74 | 320 | 5.39e-39 | 144 |
| Msa0666880 | AT1G80010.1 | 33.969 | 262 | 160 | 6 | 1 | 252 | 99 | 357 | 2.31e-37 | 139 |
| Msa0666880 | AT2G27110.2 | 32.806 | 253 | 146 | 4 | 1 | 252 | 53 | 282 | 1.21e-35 | 134 |
| Msa0666880 | AT2G27110.1 | 32.806 | 253 | 146 | 4 | 1 | 252 | 53 | 282 | 1.21e-35 | 134 |
| Msa0666880 | AT1G52520.1 | 33.984 | 256 | 154 | 5 | 1 | 252 | 89 | 333 | 6.45e-33 | 126 |
| Msa0666880 | AT2G27110.3 | 42.424 | 132 | 68 | 1 | 121 | 252 | 14 | 137 | 4.23e-30 | 118 |
| Msa0666880 | AT2G32250.7 | 31.496 | 254 | 132 | 5 | 1 | 252 | 1 | 214 | 3.89e-29 | 115 |
| Msa0666880 | AT2G32250.8 | 31.496 | 254 | 132 | 5 | 1 | 252 | 1 | 214 | 4.44e-29 | 115 |
| Msa0666880 | AT2G32250.6 | 31.496 | 254 | 132 | 5 | 1 | 252 | 42 | 255 | 5.13e-29 | 115 |
| Msa0666880 | AT2G32250.1 | 31.496 | 254 | 132 | 5 | 1 | 252 | 42 | 255 | 5.13e-29 | 115 |
| Msa0666880 | AT2G32250.3 | 31.496 | 254 | 132 | 5 | 1 | 252 | 42 | 255 | 5.13e-29 | 115 |
| Msa0666880 | AT2G32250.5 | 31.496 | 254 | 132 | 5 | 1 | 252 | 42 | 255 | 5.37e-29 | 115 |
| Msa0666880 | AT2G32250.2 | 31.496 | 254 | 132 | 5 | 1 | 252 | 42 | 255 | 5.38e-29 | 115 |
| Msa0666880 | AT2G32250.4 | 31.496 | 254 | 132 | 5 | 1 | 252 | 42 | 255 | 5.38e-29 | 115 |
| Msa0666880 | AT4G19990.7 | 29.845 | 258 | 129 | 6 | 3 | 243 | 41 | 263 | 1.19e-25 | 105 |
| Msa0666880 | AT4G19990.3 | 29.845 | 258 | 129 | 6 | 3 | 243 | 27 | 249 | 1.24e-25 | 105 |
| Msa0666880 | AT4G19990.4 | 29.845 | 258 | 129 | 6 | 3 | 243 | 27 | 249 | 1.24e-25 | 105 |
| Msa0666880 | AT4G19990.5 | 29.845 | 258 | 129 | 6 | 3 | 243 | 27 | 249 | 1.37e-25 | 105 |
| Msa0666880 | AT4G19990.6 | 29.845 | 258 | 129 | 6 | 3 | 243 | 27 | 249 | 1.43e-25 | 105 |
| Msa0666880 | AT4G19990.2 | 29.845 | 258 | 129 | 6 | 3 | 243 | 27 | 249 | 1.43e-25 | 105 |
| Msa0666880 | AT4G19990.1 | 33.333 | 183 | 87 | 3 | 61 | 243 | 45 | 192 | 5.61e-25 | 103 |
| Msa0666880 | AT1G10240.2 | 28.352 | 261 | 157 | 10 | 12 | 252 | 63 | 313 | 5.86e-23 | 98.2 |
| Msa0666880 | AT1G10240.1 | 28.352 | 261 | 157 | 10 | 12 | 252 | 63 | 313 | 5.86e-23 | 98.2 |
| Msa0666880 | AT3G06250.2 | 29.961 | 257 | 136 | 9 | 1 | 252 | 194 | 411 | 1.51e-22 | 97.1 |
| Msa0666880 | AT3G06250.1 | 29.961 | 257 | 136 | 9 | 1 | 252 | 194 | 411 | 1.51e-22 | 97.1 |
| Msa0666880 | AT3G06250.3 | 29.961 | 257 | 136 | 9 | 1 | 252 | 194 | 411 | 1.51e-22 | 97.1 |
| Msa0666880 | AT5G18960.2 | 29.183 | 257 | 141 | 9 | 1 | 252 | 215 | 435 | 2.85e-22 | 96.3 |
| Msa0666880 | AT5G18960.1 | 29.183 | 257 | 141 | 9 | 1 | 252 | 215 | 435 | 2.85e-22 | 96.3 |
| Msa0666880 | AT4G38170.1 | 52.326 | 86 | 36 | 3 | 168 | 252 | 19 | 100 | 2.26e-20 | 90.5 |
| Msa0666880 | AT5G28530.1 | 24.000 | 275 | 177 | 7 | 3 | 252 | 61 | 328 | 1.60e-16 | 79.3 |
| Msa0666880 | AT5G28530.3 | 24.000 | 275 | 177 | 7 | 3 | 252 | 61 | 328 | 1.71e-16 | 79.0 |
| Msa0666880 | AT5G28530.2 | 24.000 | 275 | 177 | 7 | 3 | 252 | 61 | 328 | 1.71e-16 | 79.0 |
Find 46 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCGTTTAAGAAATGTATTT+TGG | 0.229598 | 4_4:-7028613 | Msa0666880:CDS |
| CTTTAGATGTAACAAGAATA+TGG | 0.300326 | 4_4:-7028891 | Msa0666880:CDS |
| CTAAAGTACCGTGCCTTGTT+TGG | 0.309171 | 4_4:+7028908 | None:intergenic |
| ATATGGGGTCTCACATAAAA+AGG | 0.316365 | 4_4:-7028874 | Msa0666880:CDS |
| TTGGGCTAAGGCCATGATTA+TGG | 0.325447 | 4_4:+7028927 | None:intergenic |
| ACTTTAGCATGTAGCCGTTC+AGG | 0.339426 | 4_4:-7029076 | Msa0666880:CDS |
| CCCAAAATACATTTCTTAAA+CGG | 0.370999 | 4_4:+7028612 | None:intergenic |
| TATGCTCGACGTATGGGTTT+CGG | 0.385909 | 4_4:-7029148 | Msa0666880:CDS |
| TAAAGTACCGTGCCTTGTTT+GGG | 0.391492 | 4_4:+7028909 | None:intergenic |
| GGATATGAAAATATCACATT+TGG | 0.397765 | 4_4:-7028779 | Msa0666880:CDS |
| TCACGGTCAATCTGTGTTGT+TGG | 0.402217 | 4_4:-7028474 | Msa0666880:CDS |
| ACTGAATGCATGTATATGTT+TGG | 0.428371 | 4_4:-7028984 | Msa0666880:CDS |
| TGATGATTTACTCCAACAAA+AGG | 0.437844 | 4_4:+7028494 | None:intergenic |
| TTTAGATGTAACAAGAATAT+GGG | 0.441345 | 4_4:-7028890 | Msa0666880:CDS |
| CATGAATTATGCTCGACGTA+TGG | 0.448690 | 4_4:-7029155 | Msa0666880:CDS |
| AGGTCAGGCGGCTAAGGCTT+GGG | 0.449234 | 4_4:-7028727 | Msa0666880:CDS |
| AAGGTCAGGCGGCTAAGGCT+TGG | 0.449609 | 4_4:-7028728 | Msa0666880:CDS |
| CACGGTCAATCTGTGTTGTT+GGG | 0.468108 | 4_4:-7028473 | Msa0666880:CDS |
| GAAACTATATAGACAAGGTC+AGG | 0.479084 | 4_4:-7028742 | Msa0666880:CDS |
| ATGAATTATGCTCGACGTAT+GGG | 0.482988 | 4_4:-7029154 | Msa0666880:CDS |
| ATATTTGTTTGTTAAATAAG+TGG | 0.483824 | 4_4:+7028532 | None:intergenic |
| CTAGCATTAAAACACAATGT+AGG | 0.486737 | 4_4:-7029012 | Msa0666880:CDS |
| GATGATTTACTCCAACAAAA+GGG | 0.488733 | 4_4:+7028495 | None:intergenic |
| ACTCCAACAAAAGGGGCAAA+AGG | 0.494706 | 4_4:+7028503 | None:intergenic |
| TTTGGGCAGATGCAAGATGT+AGG | 0.500413 | 4_4:-7028595 | Msa0666880:CDS |
| TCGATGGTTGTTGAAGCAAA+TGG | 0.501880 | 4_4:-7028800 | Msa0666880:CDS |
| AGGCGGCTAAGGCTTGGGAC+AGG | 0.506657 | 4_4:-7028722 | Msa0666880:CDS |
| TAGACAAGGTCAGGCGGCTA+AGG | 0.507073 | 4_4:-7028733 | Msa0666880:CDS |
| ACCGTGCCTTGTTTGGGCTA+AGG | 0.513773 | 4_4:+7028915 | None:intergenic |
| TAGCATTAAAACACAATGTA+GGG | 0.517008 | 4_4:-7029011 | Msa0666880:CDS |
| GTTACTCTTGACCATAATCA+TGG | 0.522654 | 4_4:-7028938 | Msa0666880:CDS |
| TTGGGCAGATGCAAGATGTA+GGG | 0.541749 | 4_4:-7028594 | Msa0666880:CDS |
| TACTGAAATGACATTTAGCT+CGG | 0.553939 | 4_4:-7029200 | None:intergenic |
| AATGCATGTATATGTTTGGA+TGG | 0.568180 | 4_4:-7028980 | Msa0666880:CDS |
| AATGACATTTAGCTCGGAAG+CGG | 0.579804 | 4_4:-7029194 | Msa0666880:CDS |
| TGCTCACATACTTTCCTGAA+CGG | 0.580068 | 4_4:+7029062 | None:intergenic |
| AGCATAATTCATGTAATACA+AGG | 0.583901 | 4_4:+7029165 | None:intergenic |
| TTAGAGATTAATGATCAAGC+AGG | 0.597773 | 4_4:-7028848 | Msa0666880:CDS |
| GCCTTAGCCCAAACAAGGCA+CGG | 0.608538 | 4_4:-7028916 | Msa0666880:CDS |
| TCATGGCCTTAGCCCAAACA+AGG | 0.608595 | 4_4:-7028921 | Msa0666880:CDS |
| AGGGCTGCATATGAATACTT+TGG | 0.613424 | 4_4:-7028575 | Msa0666880:CDS |
| ATGATTTACTCCAACAAAAG+GGG | 0.614284 | 4_4:+7028496 | None:intergenic |
| TTTGTTGGAGTAAATCATCA+CGG | 0.639777 | 4_4:-7028491 | Msa0666880:CDS |
| TTAGATGTAACAAGAATATG+GGG | 0.645113 | 4_4:-7028889 | Msa0666880:CDS |
| ACTATATAGACAAGGTCAGG+CGG | 0.657287 | 4_4:-7028739 | Msa0666880:CDS |
| CTGTAGAAACTATATAGACA+AGG | 0.659640 | 4_4:-7028747 | Msa0666880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTGTTTGTTAAATAAG+TGG | + | chr4_4:7029112-7029131 | None:intergenic | 15.0% |
| !!! | ATATTTGTTTGTTAAATAAG+TGG | + | chr4_4:7029112-7029131 | None:intergenic | 15.0% |
| !! | AGTAAAATAAGTTCGAAAAA+TGG | - | chr4_4:7028520-7028539 | Msa0666880:CDS | 20.0% |
| !! | TTTAGATGTAACAAGAATAT+GGG | - | chr4_4:7028751-7028770 | Msa0666880:CDS | 20.0% |
| !!! | TAGTCAGTTTTATTATGTAA+TGG | - | chr4_4:7028990-7029009 | Msa0666880:CDS | 20.0% |
| !! | AGTAAAATAAGTTCGAAAAA+TGG | - | chr4_4:7028520-7028539 | Msa0666880:CDS | 20.0% |
| !! | TTTAGATGTAACAAGAATAT+GGG | - | chr4_4:7028751-7028770 | Msa0666880:CDS | 20.0% |
| !!! | TAGTCAGTTTTATTATGTAA+TGG | - | chr4_4:7028990-7029009 | Msa0666880:CDS | 20.0% |
| ! | AGCATAATTCATGTAATACA+AGG | + | chr4_4:7028479-7028498 | None:intergenic | 25.0% |
| ! | TAGCATTAAAACACAATGTA+GGG | - | chr4_4:7028630-7028649 | Msa0666880:CDS | 25.0% |
| ! | CTTTAGATGTAACAAGAATA+TGG | - | chr4_4:7028750-7028769 | Msa0666880:CDS | 25.0% |
| ! | TTAGATGTAACAAGAATATG+GGG | - | chr4_4:7028752-7028771 | Msa0666880:CDS | 25.0% |
| ! | GGATATGAAAATATCACATT+TGG | - | chr4_4:7028862-7028881 | Msa0666880:CDS | 25.0% |
| !!! | GTTTTATTATGTAATGGATG+TGG | - | chr4_4:7028996-7029015 | Msa0666880:CDS | 25.0% |
| ! | CCCAAAATACATTTCTTAAA+CGG | + | chr4_4:7029032-7029051 | None:intergenic | 25.0% |
| !! | CCGTTTAAGAAATGTATTTT+GGG | - | chr4_4:7029029-7029048 | Msa0666880:CDS | 25.0% |
| ! | AGCATAATTCATGTAATACA+AGG | + | chr4_4:7028479-7028498 | None:intergenic | 25.0% |
| ! | TAGCATTAAAACACAATGTA+GGG | - | chr4_4:7028630-7028649 | Msa0666880:CDS | 25.0% |
| ! | CTTTAGATGTAACAAGAATA+TGG | - | chr4_4:7028750-7028769 | Msa0666880:CDS | 25.0% |
| ! | TTAGATGTAACAAGAATATG+GGG | - | chr4_4:7028752-7028771 | Msa0666880:CDS | 25.0% |
| ! | GGATATGAAAATATCACATT+TGG | - | chr4_4:7028862-7028881 | Msa0666880:CDS | 25.0% |
| !!! | GTTTTATTATGTAATGGATG+TGG | - | chr4_4:7028996-7029015 | Msa0666880:CDS | 25.0% |
| ! | CCCAAAATACATTTCTTAAA+CGG | + | chr4_4:7029032-7029051 | None:intergenic | 25.0% |
| !! | CCGTTTAAGAAATGTATTTT+GGG | - | chr4_4:7029029-7029048 | Msa0666880:CDS | 25.0% |
| !!! | TGTGTTTTAATGCTAGCATT+TGG | + | chr4_4:7028625-7028644 | None:intergenic | 30.0% |
| CTAGCATTAAAACACAATGT+AGG | - | chr4_4:7028629-7028648 | Msa0666880:CDS | 30.0% | |
| ACTGAATGCATGTATATGTT+TGG | - | chr4_4:7028657-7028676 | Msa0666880:CDS | 30.0% | |
| AATGCATGTATATGTTTGGA+TGG | - | chr4_4:7028661-7028680 | Msa0666880:CDS | 30.0% | |
| TTAGAGATTAATGATCAAGC+AGG | - | chr4_4:7028793-7028812 | Msa0666880:CDS | 30.0% | |
| ! | CAGTAGAAATTTTAGATCGA+TGG | - | chr4_4:7028825-7028844 | Msa0666880:CDS | 30.0% |
| CTGTAGAAACTATATAGACA+AGG | - | chr4_4:7028894-7028913 | Msa0666880:CDS | 30.0% | |
| ! | GCCGTTTAAGAAATGTATTT+TGG | - | chr4_4:7029028-7029047 | Msa0666880:CDS | 30.0% |
| ATGATTTACTCCAACAAAAG+GGG | + | chr4_4:7029148-7029167 | None:intergenic | 30.0% | |
| GATGATTTACTCCAACAAAA+GGG | + | chr4_4:7029149-7029168 | None:intergenic | 30.0% | |
| TGATGATTTACTCCAACAAA+AGG | + | chr4_4:7029150-7029169 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | - | chr4_4:7029150-7029169 | Msa0666880:CDS | 30.0% | |
| !!! | TGTGTTTTAATGCTAGCATT+TGG | + | chr4_4:7028625-7028644 | None:intergenic | 30.0% |
| CTAGCATTAAAACACAATGT+AGG | - | chr4_4:7028629-7028648 | Msa0666880:CDS | 30.0% | |
| ACTGAATGCATGTATATGTT+TGG | - | chr4_4:7028657-7028676 | Msa0666880:CDS | 30.0% | |
| AATGCATGTATATGTTTGGA+TGG | - | chr4_4:7028661-7028680 | Msa0666880:CDS | 30.0% | |
| TTAGAGATTAATGATCAAGC+AGG | - | chr4_4:7028793-7028812 | Msa0666880:CDS | 30.0% | |
| ! | CAGTAGAAATTTTAGATCGA+TGG | - | chr4_4:7028825-7028844 | Msa0666880:CDS | 30.0% |
| CTGTAGAAACTATATAGACA+AGG | - | chr4_4:7028894-7028913 | Msa0666880:CDS | 30.0% | |
| ! | GCCGTTTAAGAAATGTATTT+TGG | - | chr4_4:7029028-7029047 | Msa0666880:CDS | 30.0% |
| ATGATTTACTCCAACAAAAG+GGG | + | chr4_4:7029148-7029167 | None:intergenic | 30.0% | |
| GATGATTTACTCCAACAAAA+GGG | + | chr4_4:7029149-7029168 | None:intergenic | 30.0% | |
| TGATGATTTACTCCAACAAA+AGG | + | chr4_4:7029150-7029169 | None:intergenic | 30.0% | |
| TTTGTTGGAGTAAATCATCA+CGG | - | chr4_4:7029150-7029169 | Msa0666880:CDS | 30.0% | |
| ATGAATTATGCTCGACGTAT+GGG | - | chr4_4:7028487-7028506 | Msa0666880:CDS | 35.0% | |
| AGTTCGAAAAATGGAGATGA+TGG | - | chr4_4:7028529-7028548 | Msa0666880:CDS | 35.0% | |
| GTTACTCTTGACCATAATCA+TGG | - | chr4_4:7028703-7028722 | Msa0666880:CDS | 35.0% | |
| ATATGGGGTCTCACATAAAA+AGG | - | chr4_4:7028767-7028786 | Msa0666880:CDS | 35.0% | |
| GAAACTATATAGACAAGGTC+AGG | - | chr4_4:7028899-7028918 | Msa0666880:CDS | 35.0% | |
| ATGAATTATGCTCGACGTAT+GGG | - | chr4_4:7028487-7028506 | Msa0666880:CDS | 35.0% | |
| AGTTCGAAAAATGGAGATGA+TGG | - | chr4_4:7028529-7028548 | Msa0666880:CDS | 35.0% | |
| GTTACTCTTGACCATAATCA+TGG | - | chr4_4:7028703-7028722 | Msa0666880:CDS | 35.0% | |
| ATATGGGGTCTCACATAAAA+AGG | - | chr4_4:7028767-7028786 | Msa0666880:CDS | 35.0% | |
| GAAACTATATAGACAAGGTC+AGG | - | chr4_4:7028899-7028918 | Msa0666880:CDS | 35.0% | |
| CATGAATTATGCTCGACGTA+TGG | - | chr4_4:7028486-7028505 | Msa0666880:CDS | 40.0% | |
| TGCTCACATACTTTCCTGAA+CGG | + | chr4_4:7028582-7028601 | None:intergenic | 40.0% | |
| !! | TAAAGTACCGTGCCTTGTTT+GGG | + | chr4_4:7028735-7028754 | None:intergenic | 40.0% |
| TCGATGGTTGTTGAAGCAAA+TGG | - | chr4_4:7028841-7028860 | Msa0666880:CDS | 40.0% | |
| ACTATATAGACAAGGTCAGG+CGG | - | chr4_4:7028902-7028921 | Msa0666880:CDS | 40.0% | |
| AGGGCTGCATATGAATACTT+TGG | - | chr4_4:7029066-7029085 | Msa0666880:CDS | 40.0% | |
| CATGAATTATGCTCGACGTA+TGG | - | chr4_4:7028486-7028505 | Msa0666880:CDS | 40.0% | |
| TGCTCACATACTTTCCTGAA+CGG | + | chr4_4:7028582-7028601 | None:intergenic | 40.0% | |
| !! | TAAAGTACCGTGCCTTGTTT+GGG | + | chr4_4:7028735-7028754 | None:intergenic | 40.0% |
| TCGATGGTTGTTGAAGCAAA+TGG | - | chr4_4:7028841-7028860 | Msa0666880:CDS | 40.0% | |
| ACTATATAGACAAGGTCAGG+CGG | - | chr4_4:7028902-7028921 | Msa0666880:CDS | 40.0% | |
| AGGGCTGCATATGAATACTT+TGG | - | chr4_4:7029066-7029085 | Msa0666880:CDS | 40.0% | |
| TATGCTCGACGTATGGGTTT+CGG | - | chr4_4:7028493-7028512 | Msa0666880:CDS | 45.0% | |
| ACTTTAGCATGTAGCCGTTC+AGG | - | chr4_4:7028565-7028584 | Msa0666880:CDS | 45.0% | |
| TTGGGCTAAGGCCATGATTA+TGG | + | chr4_4:7028717-7028736 | None:intergenic | 45.0% | |
| !! | CTAAAGTACCGTGCCTTGTT+TGG | + | chr4_4:7028736-7028755 | None:intergenic | 45.0% |
| TTTGGGCAGATGCAAGATGT+AGG | - | chr4_4:7029046-7029065 | Msa0666880:CDS | 45.0% | |
| TTGGGCAGATGCAAGATGTA+GGG | - | chr4_4:7029047-7029066 | Msa0666880:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCTTTTGT+TGG | - | chr4_4:7029135-7029154 | Msa0666880:CDS | 45.0% |
| ACTCCAACAAAAGGGGCAAA+AGG | + | chr4_4:7029141-7029160 | None:intergenic | 45.0% | |
| TCACGGTCAATCTGTGTTGT+TGG | - | chr4_4:7029167-7029186 | Msa0666880:CDS | 45.0% | |
| ! | CACGGTCAATCTGTGTTGTT+GGG | - | chr4_4:7029168-7029187 | Msa0666880:CDS | 45.0% |
| TATGCTCGACGTATGGGTTT+CGG | - | chr4_4:7028493-7028512 | Msa0666880:CDS | 45.0% | |
| ACTTTAGCATGTAGCCGTTC+AGG | - | chr4_4:7028565-7028584 | Msa0666880:CDS | 45.0% | |
| TTGGGCTAAGGCCATGATTA+TGG | + | chr4_4:7028717-7028736 | None:intergenic | 45.0% | |
| !! | CTAAAGTACCGTGCCTTGTT+TGG | + | chr4_4:7028736-7028755 | None:intergenic | 45.0% |
| TTTGGGCAGATGCAAGATGT+AGG | - | chr4_4:7029046-7029065 | Msa0666880:CDS | 45.0% | |
| TTGGGCAGATGCAAGATGTA+GGG | - | chr4_4:7029047-7029066 | Msa0666880:CDS | 45.0% | |
| ! | ATGCCTTTTGCCCCTTTTGT+TGG | - | chr4_4:7029135-7029154 | Msa0666880:CDS | 45.0% |
| ACTCCAACAAAAGGGGCAAA+AGG | + | chr4_4:7029141-7029160 | None:intergenic | 45.0% | |
| TCACGGTCAATCTGTGTTGT+TGG | - | chr4_4:7029167-7029186 | Msa0666880:CDS | 45.0% | |
| ! | CACGGTCAATCTGTGTTGTT+GGG | - | chr4_4:7029168-7029187 | Msa0666880:CDS | 45.0% |
| ! | TCATGGCCTTAGCCCAAACA+AGG | - | chr4_4:7028720-7028739 | Msa0666880:CDS | 50.0% |
| ! | TCATGGCCTTAGCCCAAACA+AGG | - | chr4_4:7028720-7028739 | Msa0666880:CDS | 50.0% |
| GCCTTAGCCCAAACAAGGCA+CGG | - | chr4_4:7028725-7028744 | Msa0666880:CDS | 55.0% | |
| !! | ACCGTGCCTTGTTTGGGCTA+AGG | + | chr4_4:7028729-7028748 | None:intergenic | 55.0% |
| TAGACAAGGTCAGGCGGCTA+AGG | - | chr4_4:7028908-7028927 | Msa0666880:CDS | 55.0% | |
| GCCTTAGCCCAAACAAGGCA+CGG | - | chr4_4:7028725-7028744 | Msa0666880:CDS | 55.0% | |
| !! | ACCGTGCCTTGTTTGGGCTA+AGG | + | chr4_4:7028729-7028748 | None:intergenic | 55.0% |
| TAGACAAGGTCAGGCGGCTA+AGG | - | chr4_4:7028908-7028927 | Msa0666880:CDS | 55.0% | |
| AAGGTCAGGCGGCTAAGGCT+TGG | - | chr4_4:7028913-7028932 | Msa0666880:CDS | 60.0% | |
| AGGTCAGGCGGCTAAGGCTT+GGG | - | chr4_4:7028914-7028933 | Msa0666880:CDS | 60.0% | |
| AAGGTCAGGCGGCTAAGGCT+TGG | - | chr4_4:7028913-7028932 | Msa0666880:CDS | 60.0% | |
| AGGTCAGGCGGCTAAGGCTT+GGG | - | chr4_4:7028914-7028933 | Msa0666880:CDS | 60.0% | |
| AGGCGGCTAAGGCTTGGGAC+AGG | - | chr4_4:7028919-7028938 | Msa0666880:CDS | 65.0% | |
| AGGCGGCTAAGGCTTGGGAC+AGG | - | chr4_4:7028919-7028938 | Msa0666880:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 7028448 | 7029215 | 7028448 | ID=Msa0666880;Name=Msa0666880 |
| chr4_4 | mRNA | 7028448 | 7029215 | 7028448 | ID=Msa0666880-mRNA-1;Parent=Msa0666880;Name=Msa0666880-mRNA-1;_AED=0.05;_eAED=0.20;_QI=0|-1|0|1|-1|1|1|0|255 |
| chr4_4 | exon | 7028448 | 7029215 | 7028448 | ID=Msa0666880-mRNA-1:exon:2305;Parent=Msa0666880-mRNA-1 |
| chr4_4 | CDS | 7028448 | 7029215 | 7028448 | ID=Msa0666880-mRNA-1:cds;Parent=Msa0666880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
