AlfalfaGEDB | Msa0666970

M. sativa cultivar zhongmu-4 / Msa0666970

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0666970	XP_003604546.1	96.819	723	23	0	1	723	1	723	0.0	1425

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0666970	sp\|Q9ZU46\|ZAR1_ARATH	43.243	740	364	12	3	721	7	711	0.0	575

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0666970	G7JKN7	96.819	723	23	0	1	723	1	723	0.0	1425

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0666970	MtrunA17_Chr4g0005411	96.819	723	23	0	1	723	1	723	0.0	1425
Msa0666970	MtrunA17_Chr7g0243401	71.049	715	182	8	19	721	20	721	0.0	984
Msa0666970	MtrunA17_Chr1g0209211	42.039	716	367	12	19	721	24	704	2.66e-173	513
Msa0666970	MtrunA17_Chr4g0053411	36.068	768	400	17	18	720	22	763	2.26e-133	412
Msa0666970	MtrunA17_Chr1g0208121	34.960	758	380	19	40	722	12	731	7.46e-125	389
Msa0666970	MtrunA17_Chr1g0174251	51.549	355	145	6	378	721	307	645	6.91e-106	337
Msa0666970	MtrunA17_Chr1g0174251	39.560	273	107	6	14	284	19	235	2.44e-43	166
Msa0666970	MtrunA17_Chr1g0209521	33.801	713	377	20	11	721	18	637	5.24e-95	308
Msa0666970	MtrunA17_Chr5g0437741	33.818	757	373	25	27	721	76	766	3.49e-89	296
Msa0666970	MtrunA17_Chr1g0179521	32.967	728	374	23	3	721	6	628	3.45e-86	285

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0666970	AT1G67510.1	65.272	717	220	8	17	721	20	719	0.0	905
Msa0666970	AT2G01210.1	43.243	740	364	12	3	721	7	711	0.0	575
Msa0666970	AT1G25320.1	42.565	733	367	12	3	721	7	699	0.0	538
Msa0666970	AT1G66830.1	39.700	733	378	13	1	721	1	681	5.00e-170	504
Msa0666970	AT3G57830.3	40.249	723	323	15	20	721	25	659	1.54e-151	456
Msa0666970	AT3G57830.1	40.249	723	323	15	20	721	25	659	1.54e-151	456
Msa0666970	AT2G42290.1	38.851	731	321	17	14	721	18	645	1.30e-145	440
Msa0666970	AT4G34220.1	35.190	790	397	18	3	721	8	753	3.45e-126	393
Msa0666970	AT4G37250.1	35.544	799	390	21	1	721	1	752	2.86e-125	391
Msa0666970	AT5G67280.1	35.279	771	411	21	2	721	11	744	3.04e-123	385

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Find 231 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTGAAAAGATTGGA+AGG	0.577243	4_4:-7139588	Msa0666970:CDS
AAACAAAATTAAAATGGGGT+TGG	0.513780	4_4:+7139185	None:intergenic
AAAGATTCAGCGTGCCGGAC+AGG	0.419823	4_4:+7142406	None:intergenic
AAATCTCTTCTGTCTATCAT+TGG	0.420719	4_4:-7139292	Msa0666970:three_prime_UTR
AAATGGGATGTATACTCATT+AGG	0.422173	4_4:-7139874	Msa0666970:CDS
AACACCGGTCGGAATCACAC+CGG	0.688642	4_4:+7142518	None:intergenic
AACAGAATCATCTCCCACAT+CGG	0.643095	4_4:-7139818	Msa0666970:CDS
AACCAGGTACACGAGCCTCA+GGG	0.581296	4_4:+7139911	None:intergenic
AACCATCTACAAACCTTTCA+TGG	0.430004	4_4:-7140221	Msa0666970:CDS
AACCGACTAATCAGCATCAC+TGG	0.557421	4_4:-7140048	Msa0666970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGATCAAAATAATCAAACC+AGG	+	chr4_4:7140164-7140183	None:intergenic	30.0%
ATAAGGAAGAGAATAGGATT+TGG	-	chr4_4:7140275-7140294	Msa0666970:intron	30.0%
AATAGTTTGAAGAATGAGGA+AGG	-	chr4_4:7140350-7140369	Msa0666970:intron	30.0%
TTAAGCATCCTAATATTGTG+AGG	-	chr4_4:7140627-7140646	Msa0666970:intron	30.0%
ATTGTACACAACATTTGATG+CGG	-	chr4_4:7140919-7140938	Msa0666970:intron	30.0%
CAGAAATTGCAATTACAATG+CGG	-	chr4_4:7141127-7141146	Msa0666970:intron	30.0%
TCGTAATATTGTTTCCCTTA+CGG	-	chr4_4:7141785-7141804	Msa0666970:CDS	30.0%
ACAAGGTTAAGAATTGCAAA+AGG	-	chr4_4:7142089-7142108	Msa0666970:CDS	30.0%
TTGTCAAGTAAGATGTTTGT+AGG	+	chr4_4:7142182-7142201	None:intergenic	30.0%
TGTGATGATTTCATCATGTA+AGG	+	chr4_4:7142302-7142321	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	7139153	7143153	7139153	ID=Msa0666970;Name=Msa0666970
chr4_4	mRNA	7139153	7143153	7139153	ID=Msa0666970-mRNA-1;Parent=Msa0666970;Name=Msa0666970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=81\|1\|1\|1\|1\|1\|2\|432\|723
chr4_4	exon	7139153	7140255	7139153	ID=Msa0666970-mRNA-1:exon:2318;Parent=Msa0666970-mRNA-1
chr4_4	exon	7141572	7143153	7141572	ID=Msa0666970-mRNA-1:exon:2317;Parent=Msa0666970-mRNA-1
chr4_4	five_prime_UTR	7143073	7143153	7143073	ID=Msa0666970-mRNA-1:five_prime_utr;Parent=Msa0666970-mRNA-1
chr4_4	CDS	7141572	7143072	7141572	ID=Msa0666970-mRNA-1:cds;Parent=Msa0666970-mRNA-1
chr4_4	CDS	7139585	7140255	7139585	ID=Msa0666970-mRNA-1:cds;Parent=Msa0666970-mRNA-1
chr4_4	three_prime_UTR	7139153	7139584	7139153	ID=Msa0666970-mRNA-1:three_prime_utr;Parent=Msa0666970-mRNA-1

Gene Sequence

>Msa0666970

ATGAAGTTATTTTTCTTTCTTCTTTGCTTTCATTTTTTCTTCACCTTCACATTTTCACTCTCATCAGATGGTCTTGCACTTCTCTCTCTAAAAGCTGCCGTCGATCAATCGATCGACAGCGCTTTCTCCGACTGGAATGGCGGAGATTCCTACCCCTGCGGATGGTCGGGAATCTCCTGCGCGAATATTTCCGGTGTACCGGAGCCACGTGTAGTTGGAATTGCACTCGCCGGAAAATCTCTCCGGGGATACATTCCGTCTGAGCTTGGCACGCTTCGCTATCTTCGACGTCTCAATCTTCATGATAATGAATTCTACGGTGTTGTTCCGGTTCAGTTGTTTAATGCTACTGCACTTCATAGTATTTTTCTTCACCGGAATAATCTCTCCGGTCCGTTTCCGGCTTCTGTCTGCACTGTTCCGCGTCTTCAGAATCTAGACCTGTCTGATAATTCCTTTTCCGGTGACATTCCGAATGATATCGAGAATTGCAGGCAGCTTCAGAGGCTTATTTTAGCAAGGAACAAATTCTCCGGTGTGATTCCGACCGGTGTTTGGTCGGGACTCGAGAATCTCGTCCAGCTTGATCTATCCGGTAATGATTTCAAAGGTTCGATCCCGGACGACATTGGTGACCTCGGCTCCCTGTCCGGCACGCTGAATCTTTCTTTCAACCATTTCTCCGGTAGGATTCCGAGCTCACTCGGGAAATTACCGGCCACAGTGAACTTTGATCTCCGAAGCAATAACCTAGTTGGAGAGATTCCACAAACGGGAACATTTTCAAACCAGGGCCCAACTGCATTCCTCGGTAACAAAAACCTGTGCGGACTTCCATTAAGAAAATCCTGCATAGGTTCAGACCGAGGGTCATCTGGTTCGTCTTCTCACAAAGACGAATCAGATGACCGTTCGAAAGGGTTGAGCCCTGGTTTGATTATTTTGATCTCAGCAGCAGATGTTGCTGGGGTCGCACTTGTTGGGCTTGTGATTGTATATGTTTATTGGAAGAAGAAGGATGGTCACAATGTATGGTGTTGCATAAGGAAGAGAATAGGATTTGGTGATGAGAATGAGGATGAGAAAGGAAGTGCTTGTACTTTGCTTCCATGTATAAATAGTTTGAAGAATGAGGAAGGTAATGATGAGAGTGAAGTAGATGTAGATGGAGGAGGAAAAGGAGAAGGTGAATTGGTGACAATTGATAAAGGTTTTAGGATTGAGCTTGATGAGCTTTTGAAGGCATCAGCATATGTGTTAGGGAAGAGTGCATTAGGGATTGTGTATAAGGTGGTGCTTGGAAATGGGATGCCGGTGGCTGTGAGGAGATTAGGGGAGGGTGGAGAAGAGAAGTATAAGGAGTTTGTAGCTGAGGTGCAAACCATTGGGAAGGTTAAGCATCCTAATATTGTGAGGTTGAGAGCTTATTATTGGGCTCATGATGAAAAGCTTCTTATAAGTGATTTTATCTCCAATGGCAATTTGCACAATGCACTTCGAGGGAGAAATGGTCAACCATCTACAAACCTTTCATGGTCAACAAGGTTAAGAATTGCAAAAGGAATAGCAAGAGGTTTATCTTATCTTCATGAATTTAGTCCTAGAAAATTTGTCCATGGTGACATAAAACCTACAAACATCTTACTTGACAACGACTTAGAACCCTACATTTCCGATTTTGGACTTAACCGACTAATCAGCATCACTGGCAACAGCCCTTCAACTGGTGGATTCATGGGTGGAGCACTACCTTACATGATGAAATCATCACACAAAGATAGTAGGTTTTCATCAGACAACGGTCGTGGTAACAATTACAAAGCCCCTGAGGCTCGTGTACCTGGTTGTAGACCAACACAGAAATGGGATGTATACTCATTAGGTGTTGTTTTACTTGAATTGTTGACTGGAAAATCAACAGAATCATCTCCCACATCGGCCTCATCGTCAGCTTCTGTTGAAGTTTCGGATTTGGTAAGATGGGTGAGAAATGGGTTCGATCAAGAAAGTCCATTATCTGAAATGGTTGATCCATCTTTGCTACAAGAAGTTCGTGCTAAGAAAGAGGTATTGGCTGTGTTTCATGTAGCACTTTCATGTACTGAAGGTGATCCTGAAGTTAGGCCTAGAATGAAAACTGTCTCTGAAAATCTTGAAAAGATTGGAAGGTAA

Protein sequence

>Msa0666970

MKLFFFLLCFHFFFTFTFSLSSDGLALLSLKAAVDQSIDSAFSDWNGGDSYPCGWSGISCANISGVPEPRVVGIALAGKSLRGYIPSELGTLRYLRRLNLHDNEFYGVVPVQLFNATALHSIFLHRNNLSGPFPASVCTVPRLQNLDLSDNSFSGDIPNDIENCRQLQRLILARNKFSGVIPTGVWSGLENLVQLDLSGNDFKGSIPDDIGDLGSLSGTLNLSFNHFSGRIPSSLGKLPATVNFDLRSNNLVGEIPQTGTFSNQGPTAFLGNKNLCGLPLRKSCIGSDRGSSGSSSHKDESDDRSKGLSPGLIILISAADVAGVALVGLVIVYVYWKKKDGHNVWCCIRKRIGFGDENEDEKGSACTLLPCINSLKNEEGNDESEVDVDGGGKGEGELVTIDKGFRIELDELLKASAYVLGKSALGIVYKVVLGNGMPVAVRRLGEGGEEKYKEFVAEVQTIGKVKHPNIVRLRAYYWAHDEKLLISDFISNGNLHNALRGRNGQPSTNLSWSTRLRIAKGIARGLSYLHEFSPRKFVHGDIKPTNILLDNDLEPYISDFGLNRLISITGNSPSTGGFMGGALPYMMKSSHKDSRFSSDNGRGNNYKAPEARVPGCRPTQKWDVYSLGVVLLELLTGKSTESSPTSASSSASVEVSDLVRWVRNGFDQESPLSEMVDPSLLQEVRAKKEVLAVFHVALSCTEGDPEVRPRMKTVSENLEKIGR*