AlfalfaGEDB | Msa0667450

M. sativa cultivar zhongmu-4 / Msa0667450

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667450	XP_027189323.1	55.696	237	61	7	1	202	57	284	3.33e-67	218

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667450	A0A3Q7XPU2	55.696	237	61	7	1	202	57	284	1.59e-67	218

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TFs/TRs:

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Gene ID	Type	Classification
Msa0667450	TR	ARID

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0667450	MtrunA17_Chr1g0192841	54.375	160	34	3	81	202	74	232	2.81e-49	160
Msa0667450	MtrunA17_Chr5g0445971	68.182	88	26	1	1	86	51	138	1.18e-33	118
Msa0667450	MtrunA17_Chr5g0435401	66.667	75	25	0	1	75	63	137	6.51e-26	103
Msa0667450	MtrunA17_Chr5g0435401	47.445	137	56	6	76	202	271	401	1.80e-23	96.3
Msa0667450	MtrunA17_Chr5g0435401	58.025	81	30	1	76	152	195	275	6.67e-22	92.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 34 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGCGAGGTGGTCCAAC+TGG	0.434685	4_4:-7744566	Msa0667450:CDS
AAAGAAAAGAAGAAACGGCG+AGG	0.733773	4_4:-7744578	Msa0667450:CDS
AAAGATGAATGAAACAAACA+AGG	0.685822	4_4:-7744292	Msa0667450:CDS
AAGCATCAATAGCCATGCGT+AGG	0.630888	4_4:+7744462	None:intergenic
ACAAAAGAGTAATTTGTTAG+AGG	0.388722	4_4:+7744195	None:intergenic
ACAAGTCTAAGGAAGTTTCT+CGG	0.546217	4_4:+7745083	None:intergenic
AGACTTGTATCTGCTTTACT+TGG	0.470775	4_4:-7745068	Msa0667450:CDS
AGGTTGCTCTACAAAACAAA+TGG	0.410065	4_4:-7744872	Msa0667450:CDS
AGTAAGTATCGAAATCAACC+GGG	0.679811	4_4:+7744109	None:intergenic
AGTTACACAGTTAGAGTCAC+CGG	0.586551	4_4:+7744224	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATTCTCTTGAATGTTTCA+AGG	-	chr4_4:7744309-7744328	Msa0667450:intron	30.0%
TTTGAGAAATTGTACTTCTC+TGG	-	chr4_4:7744442-7744461	Msa0667450:CDS	30.0%
ATGCTTGATATGTAGATGTT+TGG	-	chr4_4:7744545-7744564	Msa0667450:CDS	30.0%
ATGGCAAAGAAAAGAAGAAA+CGG	-	chr4_4:7744618-7744637	Msa0667450:intron	30.0%
AGTAATTAGAAATGCATGGA+AGG	+	chr4_4:7744858-7744877	None:intergenic	30.0%
CAATTCTCTTGAATGTTTCA+AGG	-	chr4_4:7744309-7744328	Msa0667450:intron	30.0%
TTTGAGAAATTGTACTTCTC+TGG	-	chr4_4:7744442-7744461	Msa0667450:CDS	30.0%
ATGCTTGATATGTAGATGTT+TGG	-	chr4_4:7744545-7744564	Msa0667450:CDS	30.0%
ATGGCAAAGAAAAGAAGAAA+CGG	-	chr4_4:7744618-7744637	Msa0667450:intron	30.0%
AGTAATTAGAAATGCATGGA+AGG	+	chr4_4:7744858-7744877	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	7744110	7745113	7744110	ID=Msa0667450;Name=Msa0667450
chr4_4	mRNA	7744110	7745113	7744110	ID=Msa0667450-mRNA-1;Parent=Msa0667450;Name=Msa0667450-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0\|0\|0\|1\|0.33\|0.25\|4\|0\|202
chr4_4	exon	7745039	7745113	7745039	ID=Msa0667450-mRNA-1:exon:2555;Parent=Msa0667450-mRNA-1
chr4_4	exon	7744748	7744892	7744748	ID=Msa0667450-mRNA-1:exon:2554;Parent=Msa0667450-mRNA-1
chr4_4	exon	7744433	7744605	7744433	ID=Msa0667450-mRNA-1:exon:2553;Parent=Msa0667450-mRNA-1
chr4_4	exon	7744110	7744322	7744110	ID=Msa0667450-mRNA-1:exon:2552;Parent=Msa0667450-mRNA-1
chr4_4	CDS	7745039	7745113	7745039	ID=Msa0667450-mRNA-1:cds;Parent=Msa0667450-mRNA-1
chr4_4	CDS	7744748	7744892	7744748	ID=Msa0667450-mRNA-1:cds;Parent=Msa0667450-mRNA-1
chr4_4	CDS	7744433	7744605	7744433	ID=Msa0667450-mRNA-1:cds;Parent=Msa0667450-mRNA-1
chr4_4	CDS	7744110	7744322	7744110	ID=Msa0667450-mRNA-1:cds;Parent=Msa0667450-mRNA-1

Gene Sequence

>Msa0667450

TTCAATGTCCGAGAAACTTCCTTAGACTTGTATCTGCTTTACTTGGAAGTCACCAGAAGAGGAGGTTTTCACCAGGTTGCTCTACAAAACAAATGGGTTGAAGTTGTCTCTGCACTGAAACTAGAAGGCAACAATGCAATGTTATCTGCTCACGTTGAAATCCTCTATGCAATACTTCTATACAAATTTGAGAAATTGTACTTCTCTGGCAGCTCCAAAGATGGCAAAGAAAAGAAGAAACGGCGAGGTGGTCCAACTGGAAAAAGTGGATATCAAATATTTCTCAAGCAGGAATGTGCTCGATTAAAAGCTCATGTTCCGGACATAGTTGGTAAAAATGTCCTACGCATGGCTATTGATGCTTGGAATAAGATGTCTGTCGACGATAAACAGGAAAGCAAAAAGATGAATGAAACAAACAAGGAAGCGATGATCATTAATGACAATAAACAGAAGAAGCCTCGTCTGTCCGGTGACTCTAACTGTGTAACTTCGCGACCTCTAACAAATTACTCTTTTGTCAACAACGCAGCCGCGAACGTGGCTTTTGAAATGACTGAAAAAACATTCAAGAATCCCTTCTTCCCGGTTGATTTCGATACTTAC

Protein sequence

>Msa0667450

FNVRETSLDLYLLYLEVTRRGGFHQVALQNKWVEVVSALKLEGNNAMLSAHVEILYAILLYKFEKLYFSGSSKDGKEKKKRRGGPTGKSGYQIFLKQECARLKAHVPDIVGKNVLRMAIDAWNKMSVDDKQESKKMNETNKEAMIINDNKQKKPRLSGDSNCVTSRPLTNYSFVNNAAANVAFEMTEKTFKNPFFPVDFDTY