Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0668860 | PNX71799.1 | 85.788 | 584 | 78 | 3 | 259 | 841 | 1 | 580 | 0.0 | 1046 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0668860 | sp|Q9SZL8|FRS5_ARATH | 35.702 | 605 | 373 | 7 | 19 | 611 | 40 | 640 | 1.27e-124 | 396 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0668860 | A0A2K3KZX1 | 85.788 | 584 | 78 | 3 | 259 | 841 | 1 | 580 | 0.0 | 1046 |
Gene ID | Type | Classification |
---|---|---|
Msa0668860 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0668860 | MtrunA17_Chr1g0203721 | 43.056 | 648 | 359 | 5 | 48 | 688 | 65 | 709 | 0.0 | 562 |
Msa0668860 | MtrunA17_Chr6g0458391 | 46.261 | 575 | 284 | 6 | 35 | 605 | 212 | 765 | 0.0 | 551 |
Msa0668860 | MtrunA17_Chr6g0458391 | 51.163 | 129 | 61 | 2 | 44 | 171 | 89 | 216 | 9.71e-34 | 139 |
Msa0668860 | MtrunA17_Chr3g0082121 | 44.234 | 633 | 333 | 8 | 43 | 671 | 40 | 656 | 3.09e-173 | 517 |
Msa0668860 | MtrunA17_Chr2g0324011 | 42.687 | 588 | 328 | 5 | 40 | 623 | 4 | 586 | 5.69e-164 | 489 |
Msa0668860 | MtrunA17_Chr5g0448761 | 34.509 | 652 | 412 | 8 | 43 | 684 | 57 | 703 | 1.67e-125 | 395 |
Msa0668860 | MtrunA17_Chr8g0363841 | 33.683 | 668 | 413 | 14 | 40 | 688 | 11 | 667 | 1.74e-118 | 374 |
Msa0668860 | MtrunA17_Chr1g0202341 | 32.451 | 567 | 368 | 9 | 46 | 605 | 51 | 609 | 6.55e-105 | 338 |
Msa0668860 | MtrunA17_Chr2g0287651 | 31.212 | 660 | 415 | 15 | 50 | 696 | 79 | 712 | 5.21e-98 | 325 |
Msa0668860 | MtrunA17_Chr1g0207551 | 31.629 | 626 | 407 | 8 | 41 | 660 | 29 | 639 | 1.02e-96 | 320 |
Msa0668860 | MtrunA17_Chr5g0441581 | 32.764 | 644 | 403 | 15 | 46 | 678 | 32 | 656 | 2.77e-95 | 313 |
Msa0668860 | MtrunA17_Chr5g0440451 | 32.110 | 654 | 402 | 12 | 46 | 678 | 43 | 675 | 5.05e-94 | 315 |
Msa0668860 | MtrunA17_Chr1g0164591 | 47.022 | 319 | 157 | 4 | 123 | 440 | 1 | 308 | 5.26e-94 | 298 |
Msa0668860 | MtrunA17_Chr2g0287061 | 33.158 | 570 | 336 | 11 | 44 | 611 | 181 | 707 | 3.75e-91 | 305 |
Msa0668860 | MtrunA17_Chr2g0287061 | 33.333 | 156 | 85 | 4 | 27 | 182 | 15 | 151 | 3.17e-14 | 77.0 |
Msa0668860 | MtrunA17_Chr3g0080351 | 31.642 | 670 | 385 | 16 | 15 | 660 | 53 | 673 | 9.02e-90 | 302 |
Msa0668860 | MtrunA17_Chr7g0258861 | 49.481 | 289 | 139 | 3 | 40 | 323 | 4 | 290 | 7.27e-85 | 273 |
Msa0668860 | MtrunA17_Chr1g0203051 | 30.728 | 563 | 367 | 11 | 38 | 592 | 74 | 621 | 8.63e-85 | 283 |
Msa0668860 | MtrunA17_Chr2g0329031 | 28.591 | 724 | 471 | 13 | 46 | 749 | 14 | 711 | 1.49e-84 | 285 |
Msa0668860 | MtrunA17_Chr5g0448511 | 31.463 | 499 | 329 | 6 | 218 | 711 | 11 | 501 | 6.10e-83 | 276 |
Msa0668860 | MtrunA17_Chr3g0118611 | 36.195 | 431 | 262 | 6 | 219 | 647 | 118 | 537 | 2.72e-79 | 272 |
Msa0668860 | MtrunA17_Chr1g0198761 | 30.651 | 584 | 369 | 11 | 42 | 604 | 43 | 611 | 2.29e-77 | 266 |
Msa0668860 | MtrunA17_Chr2g0296781 | 28.674 | 694 | 425 | 15 | 50 | 718 | 1 | 649 | 1.16e-75 | 261 |
Msa0668860 | MtrunA17_Chr6g0477261 | 33.185 | 449 | 280 | 6 | 169 | 605 | 5 | 445 | 2.63e-72 | 250 |
Msa0668860 | MtrunA17_Chr2g0276841 | 28.571 | 651 | 403 | 16 | 45 | 664 | 69 | 688 | 5.69e-69 | 242 |
Msa0668860 | MtrunA17_Chr2g0291591 | 30.247 | 486 | 328 | 6 | 36 | 519 | 54 | 530 | 8.70e-66 | 230 |
Msa0668860 | MtrunA17_Chr2g0294841 | 28.403 | 595 | 362 | 11 | 40 | 600 | 39 | 603 | 2.82e-65 | 233 |
Msa0668860 | MtrunA17_Chr1g0196541 | 27.225 | 573 | 383 | 10 | 50 | 605 | 1 | 556 | 3.52e-64 | 229 |
Msa0668860 | MtrunA17_Chr2g0291581 | 27.645 | 586 | 375 | 12 | 46 | 611 | 71 | 627 | 8.21e-63 | 224 |
Msa0668860 | MtrunA17_Chr2g0290391 | 28.264 | 605 | 385 | 16 | 33 | 611 | 37 | 618 | 1.15e-61 | 221 |
Msa0668860 | MtrunA17_Chr5g0431001 | 30.787 | 432 | 282 | 8 | 45 | 463 | 60 | 487 | 1.04e-56 | 203 |
Msa0668860 | MtrunA17_Chr1g0149131 | 52.632 | 114 | 52 | 1 | 324 | 437 | 1 | 112 | 3.46e-35 | 129 |
Msa0668860 | MtrunA17_Chr2g0308841 | 26.887 | 212 | 153 | 2 | 395 | 604 | 15 | 226 | 3.71e-22 | 97.1 |
Msa0668860 | MtrunA17_Chr7g0233911 | 45.283 | 106 | 54 | 2 | 46 | 148 | 34 | 138 | 6.62e-21 | 92.0 |
Msa0668860 | MtrunA17_Chr4g0033611 | 35.714 | 168 | 89 | 6 | 46 | 201 | 76 | 236 | 2.64e-20 | 91.7 |
Msa0668860 | MtrunA17_Chr5g0401121 | 41.667 | 144 | 69 | 7 | 14 | 146 | 19 | 158 | 7.73e-19 | 84.7 |
Msa0668860 | MtrunA17_Chr2g0329421 | 40.367 | 109 | 61 | 3 | 46 | 152 | 27 | 133 | 1.25e-17 | 82.4 |
Msa0668860 | MtrunA17_Chr2g0329361 | 37.097 | 124 | 64 | 5 | 35 | 149 | 49 | 167 | 1.05e-16 | 80.9 |
Msa0668860 | MtrunA17_Chr7g0238821 | 37.615 | 109 | 62 | 3 | 50 | 155 | 1 | 106 | 8.57e-16 | 73.9 |
Msa0668860 | MtrunA17_Chr3g0078041 | 42.202 | 109 | 58 | 3 | 46 | 150 | 50 | 157 | 4.08e-14 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0668860 | AT4G38180.1 | 35.702 | 605 | 373 | 7 | 19 | 611 | 40 | 640 | 1.29e-125 | 396 |
Msa0668860 | AT4G15090.1 | 30.727 | 729 | 457 | 13 | 28 | 746 | 36 | 726 | 1.37e-99 | 328 |
Msa0668860 | AT4G15090.5 | 30.727 | 729 | 457 | 13 | 28 | 746 | 36 | 726 | 1.37e-99 | 328 |
Msa0668860 | AT4G15090.3 | 30.727 | 729 | 457 | 13 | 28 | 746 | 36 | 726 | 1.37e-99 | 328 |
Msa0668860 | AT4G15090.2 | 30.727 | 729 | 457 | 13 | 28 | 746 | 36 | 726 | 1.37e-99 | 328 |
Msa0668860 | AT4G15090.4 | 30.727 | 729 | 457 | 13 | 28 | 746 | 36 | 726 | 1.37e-99 | 328 |
Msa0668860 | AT3G06250.2 | 32.119 | 604 | 349 | 12 | 30 | 625 | 174 | 724 | 2.80e-97 | 321 |
Msa0668860 | AT3G06250.2 | 31.677 | 161 | 91 | 4 | 22 | 178 | 7 | 152 | 7.72e-17 | 85.9 |
Msa0668860 | AT3G06250.1 | 32.119 | 604 | 349 | 12 | 30 | 625 | 174 | 724 | 2.80e-97 | 321 |
Msa0668860 | AT3G06250.1 | 31.677 | 161 | 91 | 4 | 22 | 178 | 7 | 152 | 7.72e-17 | 85.9 |
Msa0668860 | AT3G06250.3 | 32.119 | 604 | 349 | 12 | 30 | 625 | 174 | 724 | 2.80e-97 | 321 |
Msa0668860 | AT3G06250.3 | 31.677 | 161 | 91 | 4 | 22 | 178 | 7 | 152 | 7.72e-17 | 85.9 |
Msa0668860 | AT2G27110.2 | 31.467 | 661 | 406 | 12 | 18 | 671 | 21 | 641 | 1.71e-93 | 313 |
Msa0668860 | AT2G27110.1 | 31.467 | 661 | 406 | 12 | 18 | 671 | 21 | 641 | 1.71e-93 | 313 |
Msa0668860 | AT3G22170.2 | 31.006 | 616 | 374 | 10 | 46 | 644 | 70 | 651 | 1.75e-89 | 301 |
Msa0668860 | AT3G22170.1 | 31.006 | 616 | 374 | 10 | 46 | 644 | 70 | 651 | 1.75e-89 | 301 |
Msa0668860 | AT5G18960.2 | 31.356 | 590 | 345 | 13 | 46 | 626 | 211 | 749 | 4.75e-89 | 299 |
Msa0668860 | AT5G18960.2 | 39.535 | 129 | 65 | 3 | 36 | 163 | 33 | 149 | 8.33e-18 | 89.0 |
Msa0668860 | AT5G18960.1 | 31.356 | 590 | 345 | 13 | 46 | 626 | 211 | 749 | 4.75e-89 | 299 |
Msa0668860 | AT5G18960.1 | 39.535 | 129 | 65 | 3 | 36 | 163 | 33 | 149 | 8.33e-18 | 89.0 |
Msa0668860 | AT1G76320.1 | 30.229 | 612 | 408 | 8 | 50 | 660 | 1 | 594 | 2.60e-81 | 277 |
Msa0668860 | AT1G76320.4 | 30.229 | 612 | 408 | 8 | 50 | 660 | 1 | 594 | 2.60e-81 | 277 |
Msa0668860 | AT1G76320.2 | 30.229 | 612 | 408 | 8 | 50 | 660 | 1 | 594 | 2.94e-81 | 276 |
Msa0668860 | AT1G76320.3 | 30.229 | 612 | 408 | 8 | 50 | 660 | 1 | 594 | 3.41e-81 | 275 |
Msa0668860 | AT2G27110.3 | 33.474 | 475 | 303 | 6 | 200 | 671 | 32 | 496 | 3.53e-79 | 270 |
Msa0668860 | AT4G38170.1 | 32.250 | 400 | 263 | 4 | 208 | 605 | 6 | 399 | 4.82e-74 | 252 |
Msa0668860 | AT4G19990.3 | 29.073 | 626 | 376 | 12 | 27 | 633 | 7 | 583 | 2.62e-71 | 250 |
Msa0668860 | AT4G19990.4 | 29.073 | 626 | 376 | 12 | 27 | 633 | 7 | 583 | 2.62e-71 | 250 |
Msa0668860 | AT4G19990.6 | 29.073 | 626 | 376 | 12 | 27 | 633 | 7 | 583 | 2.84e-71 | 250 |
Msa0668860 | AT4G19990.2 | 29.073 | 626 | 376 | 12 | 27 | 633 | 7 | 583 | 2.84e-71 | 250 |
Msa0668860 | AT4G19990.5 | 29.073 | 626 | 376 | 12 | 27 | 633 | 7 | 583 | 3.40e-71 | 249 |
Msa0668860 | AT4G19990.7 | 29.073 | 626 | 376 | 12 | 27 | 633 | 21 | 597 | 5.98e-71 | 249 |
Msa0668860 | AT1G10240.2 | 28.547 | 592 | 388 | 14 | 32 | 606 | 35 | 608 | 1.68e-66 | 235 |
Msa0668860 | AT1G10240.1 | 28.547 | 592 | 388 | 14 | 32 | 606 | 35 | 608 | 1.68e-66 | 235 |
Msa0668860 | AT4G19990.1 | 29.924 | 528 | 325 | 8 | 109 | 633 | 41 | 526 | 3.55e-65 | 231 |
Msa0668860 | AT1G52520.1 | 29.239 | 578 | 361 | 15 | 46 | 602 | 85 | 635 | 3.51e-64 | 229 |
Msa0668860 | AT2G32250.8 | 31.306 | 444 | 285 | 7 | 226 | 663 | 135 | 564 | 7.86e-64 | 229 |
Msa0668860 | AT2G32250.7 | 31.306 | 444 | 285 | 7 | 226 | 663 | 135 | 564 | 8.26e-64 | 229 |
Msa0668860 | AT2G32250.6 | 31.306 | 444 | 285 | 7 | 226 | 663 | 176 | 605 | 1.04e-63 | 229 |
Msa0668860 | AT2G32250.1 | 31.306 | 444 | 285 | 7 | 226 | 663 | 176 | 605 | 1.04e-63 | 229 |
Msa0668860 | AT2G32250.3 | 31.306 | 444 | 285 | 7 | 226 | 663 | 176 | 605 | 1.04e-63 | 229 |
Msa0668860 | AT2G32250.2 | 31.306 | 444 | 285 | 7 | 226 | 663 | 176 | 605 | 1.04e-63 | 229 |
Msa0668860 | AT2G32250.4 | 31.306 | 444 | 285 | 7 | 226 | 663 | 176 | 605 | 1.04e-63 | 229 |
Msa0668860 | AT2G32250.5 | 31.306 | 444 | 285 | 7 | 226 | 663 | 176 | 605 | 1.21e-63 | 228 |
Msa0668860 | AT1G80010.1 | 28.763 | 598 | 390 | 14 | 46 | 621 | 95 | 678 | 1.48e-63 | 228 |
Msa0668860 | AT5G28530.3 | 27.500 | 600 | 388 | 13 | 46 | 620 | 55 | 632 | 1.53e-62 | 224 |
Msa0668860 | AT5G28530.2 | 27.500 | 600 | 388 | 13 | 46 | 620 | 55 | 632 | 1.53e-62 | 224 |
Msa0668860 | AT5G28530.1 | 27.107 | 605 | 388 | 14 | 46 | 620 | 55 | 636 | 6.13e-62 | 222 |
Msa0668860 | AT5G28530.5 | 24.365 | 591 | 355 | 15 | 46 | 620 | 55 | 569 | 1.52e-40 | 159 |
Msa0668860 | AT5G28530.4 | 23.993 | 596 | 355 | 16 | 46 | 620 | 55 | 573 | 7.07e-40 | 157 |
Msa0668860 | AT3G59470.3 | 42.593 | 108 | 60 | 2 | 46 | 152 | 70 | 176 | 2.65e-20 | 91.7 |
Msa0668860 | AT3G59470.1 | 42.593 | 108 | 60 | 2 | 46 | 152 | 70 | 176 | 2.65e-20 | 91.7 |
Msa0668860 | AT3G59470.2 | 42.593 | 108 | 60 | 2 | 46 | 152 | 82 | 188 | 3.73e-20 | 91.7 |
Msa0668860 | AT3G07500.1 | 42.735 | 117 | 60 | 4 | 46 | 156 | 33 | 148 | 4.49e-18 | 84.3 |
Msa0668860 | AT4G12850.4 | 37.398 | 123 | 73 | 3 | 46 | 166 | 11 | 131 | 1.63e-15 | 74.7 |
Msa0668860 | AT4G12850.2 | 39.604 | 101 | 59 | 2 | 46 | 146 | 11 | 109 | 1.38e-14 | 72.0 |
Msa0668860 | AT4G12850.1 | 39.604 | 101 | 59 | 2 | 46 | 146 | 11 | 109 | 2.47e-14 | 72.8 |
Msa0668860 | AT2G43280.1 | 35.036 | 137 | 79 | 6 | 44 | 174 | 20 | 152 | 1.90e-11 | 64.7 |
Find 110 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGATGATATGTTTCACTTTC+AGG | 0.098617 | 4_4:-10173925 | None:intergenic |
GATCTTGCATCCATTTATTT+TGG | 0.182893 | 4_4:-10174113 | None:intergenic |
ACTTTGATCTTCAGAGTTAA+AGG | 0.202395 | 4_4:-10174541 | None:intergenic |
GGTAATTTATGCTTACTTCT+AGG | 0.207796 | 4_4:-10173325 | None:intergenic |
ACCTCTTCAATATGTACTTT+TGG | 0.218894 | 4_4:-10174656 | None:intergenic |
CGATTTGCCACAACTATCTT+TGG | 0.225821 | 4_4:-10174741 | None:intergenic |
CCATTAGAATTCATATTTAC+TGG | 0.226524 | 4_4:-10172513 | None:intergenic |
TTATGTAGTACCTGCATAAT+TGG | 0.248682 | 4_4:-10175113 | None:intergenic |
TCTTGATATGTATGTGAAAA+TGG | 0.253215 | 4_4:-10175234 | None:intergenic |
AATTTATATGCTGGCTTTGT+TGG | 0.254717 | 4_4:+10173067 | Msa0668860:CDS |
GGCAGATGCTAAAATGGTTT+TGG | 0.263694 | 4_4:+10173642 | Msa0668860:CDS |
TTTCTGGGCAGATGCTAAAA+TGG | 0.272110 | 4_4:+10173636 | Msa0668860:CDS |
TACATGATGGCTTGTCTTCA+TGG | 0.309415 | 4_4:+10175664 | Msa0668860:CDS |
TATTCAATGCAGGCATCTTC+TGG | 0.309663 | 4_4:-10174344 | None:intergenic |
ACGACCTTCACCAAAATAAA+TGG | 0.312043 | 4_4:+10174103 | Msa0668860:CDS |
AATGACATGAATAACGAAAA+TGG | 0.314237 | 4_4:+10175399 | Msa0668860:CDS |
GATAAATGACATGCGTTATA+AGG | 0.325984 | 4_4:+10174296 | Msa0668860:CDS |
TGATGGTTGAATCCAATAAA+AGG | 0.326217 | 4_4:-10173739 | None:intergenic |
GAAGATGCCTGCATTGAATA+TGG | 0.336910 | 4_4:+10174347 | Msa0668860:CDS |
CATAGAGAAAGTGTGATATT+TGG | 0.337284 | 4_4:+10173760 | Msa0668860:CDS |
GATGGTAAATCACGCATAAA+AGG | 0.338412 | 4_4:+10174999 | Msa0668860:CDS |
GGAGAACACGGGGAAGAATT+TGG | 0.347555 | 4_4:+10175420 | Msa0668860:CDS |
CTTCATTTCCTTCATCCTCT+TGG | 0.349382 | 4_4:-10173506 | None:intergenic |
TCAAACTCCATGCCAACATA+TGG | 0.373528 | 4_4:-10173016 | None:intergenic |
GTAATTTATGCTTACTTCTA+GGG | 0.397907 | 4_4:-10173324 | None:intergenic |
CCAGTAAATATGAATTCTAA+TGG | 0.398242 | 4_4:+10172513 | Msa0668860:CDS |
GGGATGCAAGCTCATGATTA+TGG | 0.399641 | 4_4:-10173303 | None:intergenic |
ATCATCTGTTACTATCTCAT+TGG | 0.408367 | 4_4:-10174937 | None:intergenic |
CGAACTAGAGAAAAGATAAC+TGG | 0.408912 | 4_4:-10174408 | None:intergenic |
ACATGATGGCTTGTCTTCAT+GGG | 0.409074 | 4_4:+10175665 | Msa0668860:CDS |
TCAATTTCAACCAAGTCCTT+TGG | 0.409112 | 4_4:+10175539 | Msa0668860:CDS |
ATATCACACTTTCTCTATGA+TGG | 0.419699 | 4_4:-10173756 | None:intergenic |
TACACATCAACAACAAATCT+TGG | 0.427855 | 4_4:+10174897 | Msa0668860:CDS |
AGCAATGTCAATGAACCATT+AGG | 0.429016 | 4_4:+10172474 | Msa0668860:CDS |
AGCACATGTTGTCATTAGTC+GGG | 0.431183 | 4_4:+10173240 | Msa0668860:CDS |
TGATCTGTGAAAATTGTCTT+CGG | 0.437044 | 4_4:-10173865 | None:intergenic |
GGTTTATCGCCACTCCCTAA+TGG | 0.444741 | 4_4:-10172489 | None:intergenic |
TCTCGTAAGGATATCAGAAC+TGG | 0.455278 | 4_4:+10173211 | Msa0668860:CDS |
TCAAGCAGCTGAGGTAGAAA+TGG | 0.462861 | 4_4:+10173372 | Msa0668860:CDS |
TCAAGCAAGGCTGCTGAAGA+TGG | 0.463547 | 4_4:+10174798 | Msa0668860:CDS |
TAGCACATGTTGTCATTAGT+CGG | 0.467396 | 4_4:+10173239 | Msa0668860:CDS |
GCAATGTCAATGAACCATTA+GGG | 0.473025 | 4_4:+10172475 | Msa0668860:CDS |
CAATTAAGTGAGAGCTTCAA+TGG | 0.473964 | 4_4:+10174207 | Msa0668860:CDS |
TGGATGTGTGCTAGACGGTA+AGG | 0.483878 | 4_4:+10174698 | Msa0668860:CDS |
AGGATGACTTTCTTGCAGCT+TGG | 0.485331 | 4_4:+10174061 | Msa0668860:CDS |
CATTCTACCGATGCTTATCA+TGG | 0.489055 | 4_4:+10175444 | Msa0668860:CDS |
GTAGAAATGGCAAATCGATC+TGG | 0.489212 | 4_4:+10173385 | Msa0668860:CDS |
AAATTCTAACACATTATAAG+TGG | 0.492971 | 4_4:-10174253 | None:intergenic |
CATATCATCGTTTATGCTTG+TGG | 0.497578 | 4_4:+10173938 | Msa0668860:CDS |
GATCTATGTCGCACTGCAGT+AGG | 0.499374 | 4_4:+10174771 | Msa0668860:CDS |
AAATCTATATGCATGGTCTT+CGG | 0.500652 | 4_4:-10173041 | None:intergenic |
GCTTAAAATACCAAAGGACT+TGG | 0.501002 | 4_4:-10175549 | None:intergenic |
GCGTGAAGAACCATATCAAT+TGG | 0.502432 | 4_4:-10175703 | None:intergenic |
CTCAACAAATGTAGAGCCTC+AGG | 0.502446 | 4_4:+10175500 | Msa0668860:CDS |
GTCTTCATGGGGTGGAAACA+AGG | 0.516471 | 4_4:+10175677 | Msa0668860:CDS |
AACCATCATGCCAATTATGC+AGG | 0.524501 | 4_4:+10175103 | Msa0668860:CDS |
TTCTGCTGCTCAAGCAGCTG+AGG | 0.524786 | 4_4:+10173363 | Msa0668860:CDS |
AGCTAGTATTAGTACATCAC+AGG | 0.524897 | 4_4:+10175266 | Msa0668860:CDS |
CAAACTCCATGCCAACATAT+GGG | 0.526793 | 4_4:-10173015 | None:intergenic |
CACAGATCAAGATGCTGCCA+TGG | 0.526872 | 4_4:+10173879 | Msa0668860:CDS |
TAGGAATTTAGCTTACATGA+TGG | 0.535116 | 4_4:+10175651 | Msa0668860:intron |
TACCACTGTATCAAAAGCCA+TGG | 0.535613 | 4_4:+10174962 | Msa0668860:CDS |
TTTAACTGCCAAGAGGATGA+AGG | 0.543689 | 4_4:+10173498 | Msa0668860:CDS |
CAAGAGGATGAAGGAAATGA+AGG | 0.543859 | 4_4:+10173507 | Msa0668860:CDS |
ATGATATCCATATTCAATGC+AGG | 0.546116 | 4_4:-10174354 | None:intergenic |
ATAAATTACCATCACAAAGG+AGG | 0.551834 | 4_4:+10173338 | Msa0668860:CDS |
AGGATGAAGGAAATGAAGGA+AGG | 0.556547 | 4_4:+10173511 | Msa0668860:CDS |
GAAGATATAATCCCATATGT+TGG | 0.564964 | 4_4:+10173004 | Msa0668860:CDS |
TAAATTACCATCACAAAGGA+GGG | 0.565763 | 4_4:+10173339 | Msa0668860:CDS |
AAAAGTACATATTGAAGAGG+TGG | 0.567774 | 4_4:+10174658 | Msa0668860:CDS |
TAATTTATGCTTACTTCTAG+GGG | 0.570523 | 4_4:-10173323 | None:intergenic |
GTCAATGAACCATTAGGGAG+TGG | 0.572938 | 4_4:+10172480 | Msa0668860:CDS |
TTTATGAGTCAACACATTGG+AGG | 0.581099 | 4_4:+10173433 | Msa0668860:CDS |
CATGGCAAAAGCAATTTCAG+AGG | 0.581298 | 4_4:+10173897 | Msa0668860:CDS |
TTATGAGTCAACACATTGGA+GGG | 0.581501 | 4_4:+10173434 | Msa0668860:CDS |
GTAAATCACGCATAAAAGGC+AGG | 0.583524 | 4_4:+10175003 | Msa0668860:CDS |
AATTATAAAATCTATATGCA+TGG | 0.584715 | 4_4:-10173048 | None:intergenic |
CTCTTGTCCATGATAAGCAT+CGG | 0.585310 | 4_4:-10175451 | None:intergenic |
CCCAAAAGTACATATTGAAG+AGG | 0.586430 | 4_4:+10174655 | Msa0668860:CDS |
AAAAGAATCTGATCTCTGAA+AGG | 0.587430 | 4_4:-10173998 | None:intergenic |
TATAATCCCATATGTTGGCA+TGG | 0.590560 | 4_4:+10173009 | Msa0668860:CDS |
CGGAGTGGATGTGTGCTAGA+CGG | 0.591833 | 4_4:+10174693 | Msa0668860:CDS |
GAGTCAACACATTGGAGGGA+GGG | 0.592924 | 4_4:+10173438 | Msa0668860:CDS |
CATGATGGCTTGTCTTCATG+GGG | 0.595058 | 4_4:+10175666 | Msa0668860:CDS |
TACCTGCATAATTGGCATGA+TGG | 0.603981 | 4_4:-10175105 | None:intergenic |
GTCGTAGATTCTTATTAGTG+CGG | 0.606649 | 4_4:-10173708 | None:intergenic |
AACTCAGCAGATGGTGCCTG+AGG | 0.610239 | 4_4:-10175516 | None:intergenic |
GGATGTGTGCTAGACGGTAA+GGG | 0.610653 | 4_4:+10174699 | Msa0668860:CDS |
TGAGTCAACACATTGGAGGG+AGG | 0.614265 | 4_4:+10173437 | Msa0668860:CDS |
GCAGAAACCCTCCTTTGTGA+TGG | 0.614369 | 4_4:-10173346 | None:intergenic |
ATTGGAGGGAGGGAGAATGT+TGG | 0.617700 | 4_4:+10173448 | Msa0668860:CDS |
TTAGAATTCATATTTACTGG+AGG | 0.621664 | 4_4:-10172510 | None:intergenic |
AGAAGATCCAAAGATAGTTG+TGG | 0.622671 | 4_4:+10174734 | Msa0668860:CDS |
TGCAGTAGGAATATCAAGCA+AGG | 0.624129 | 4_4:+10174785 | Msa0668860:CDS |
AATAACGAAAATGGAGAACA+CGG | 0.627085 | 4_4:+10175408 | Msa0668860:CDS |
AGAGGTGGACTAAACAAGCT+CGG | 0.635859 | 4_4:+10174673 | Msa0668860:CDS |
GTCATTAGTCGGGAATCAAG+TGG | 0.642505 | 4_4:+10173250 | Msa0668860:CDS |
ACCACTGTATCAAAAGCCAT+GGG | 0.643278 | 4_4:+10174963 | Msa0668860:CDS |
AGCATAAATTACCATCACAA+AGG | 0.644723 | 4_4:+10173335 | Msa0668860:CDS |
AAATTGCAGCATCATTTGAG+TGG | 0.646648 | 4_4:+10173803 | Msa0668860:CDS |
GATGGCTTGTCTTCATGGGG+TGG | 0.647236 | 4_4:+10175669 | Msa0668860:CDS |
ATCAACAACAAATCTTGGTG+AGG | 0.650143 | 4_4:+10174902 | Msa0668860:CDS |
GCAATCATTTAACTGCCAAG+AGG | 0.652505 | 4_4:+10173491 | Msa0668860:CDS |
CTCGAAGAGCATGACAACAA+AGG | 0.653528 | 4_4:-10174602 | None:intergenic |
ATAACGAAAATGGAGAACAC+GGG | 0.654047 | 4_4:+10175409 | Msa0668860:CDS |
AGGCAGGCCTAAGAGTTGTG+TGG | 0.658380 | 4_4:+10175019 | Msa0668860:CDS |
TGGACTAAACAAGCTCGGAG+TGG | 0.667189 | 4_4:+10174678 | Msa0668860:CDS |
TGAAATTGAAACTCAGCAGA+TGG | 0.678366 | 4_4:-10175525 | None:intergenic |
GAGTTTATGAGTCAACACAT+TGG | 0.684911 | 4_4:+10173430 | Msa0668860:CDS |
TAACGAAAATGGAGAACACG+GGG | 0.724055 | 4_4:+10175410 | Msa0668860:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CAATGTTTTTAAATATTTTT+AGG | + | chr4_4:10172563-10172582 | Msa0668860:intron | 10.0% |
!!! | AATTAAAGTGTTATTATTAA+AGG | - | chr4_4:10172754-10172773 | None:intergenic | 10.0% |
!! | AATTATAAAATCTATATGCA+TGG | - | chr4_4:10173051-10173070 | None:intergenic | 15.0% |
!!! | AGATTTTATAATTTATATGC+TGG | + | chr4_4:10173058-10173077 | Msa0668860:CDS | 15.0% |
!!! | TTTTGGATTATGTTTATTTT+GGG | + | chr4_4:10173659-10173678 | Msa0668860:CDS | 15.0% |
!! | TCTATAAGAAAAAAGAAAAA+TGG | + | chr4_4:10174136-10174155 | Msa0668860:CDS | 15.0% |
!! | CTATAAGAAAAAAGAAAAAT+GGG | + | chr4_4:10174137-10174156 | Msa0668860:CDS | 15.0% |
!! | TAAACATTTAACATGAACAT+AGG | - | chr4_4:10172848-10172867 | None:intergenic | 20.0% |
!! | ATCTATTATAAACAAGCAAT+CGG | - | chr4_4:10172899-10172918 | None:intergenic | 20.0% |
!!! | ATTTTCTTATTCACAGTTAA+AGG | + | chr4_4:10172950-10172969 | Msa0668860:intron | 20.0% |
!!! | TTTTCTTATTCACAGTTAAA+GGG | + | chr4_4:10172951-10172970 | Msa0668860:intron | 20.0% |
!!! | AAGTTTGTTTGTTTTAAAGA+AGG | + | chr4_4:10173154-10173173 | Msa0668860:CDS | 20.0% |
!!! | GTTTTGGATTATGTTTATTT+TGG | + | chr4_4:10173658-10173677 | Msa0668860:CDS | 20.0% |
!!! | TTTGGATTATGTTTATTTTG+GGG | + | chr4_4:10173660-10173679 | Msa0668860:CDS | 20.0% |
!!! | GTTGTTTAAAACTTTTCTTA+AGG | + | chr4_4:10173825-10173844 | Msa0668860:CDS | 20.0% |
!!! | CATTTATGATTTTGAATATG+AGG | + | chr4_4:10174041-10174060 | Msa0668860:CDS | 20.0% |
!! | AAATTCTAACACATTATAAG+TGG | - | chr4_4:10174256-10174275 | None:intergenic | 20.0% |
!!! | AATATGTAGTAAGTTTTTTC+AGG | + | chr4_4:10174496-10174515 | Msa0668860:CDS | 20.0% |
!!! | ATATGTAGTAAGTTTTTTCA+GGG | + | chr4_4:10174497-10174516 | Msa0668860:CDS | 20.0% |
!! | AAAAAATACAAAAGAAGCAA+AGG | + | chr4_4:10175044-10175063 | Msa0668860:CDS | 20.0% |
!!! | AAGCAAATTTTTTTAATCAG+TGG | + | chr4_4:10175611-10175630 | Msa0668860:intron | 20.0% |
! | TTAGAATTCATATTTACTGG+AGG | - | chr4_4:10172513-10172532 | None:intergenic | 25.0% |
! | CCATTAGAATTCATATTTAC+TGG | - | chr4_4:10172516-10172535 | None:intergenic | 25.0% |
! | CCAGTAAATATGAATTCTAA+TGG | + | chr4_4:10172513-10172532 | Msa0668860:CDS | 25.0% |
! | ATACTTAGAAATTGATCGAT+AGG | + | chr4_4:10172591-10172610 | Msa0668860:intron | 25.0% |
! | CTAGTTATAGTTGTTTATGT+TGG | + | chr4_4:10172668-10172687 | Msa0668860:intron | 25.0% |
!!! | ACATAGGTTTTTTTCTAGTT+TGG | - | chr4_4:10172832-10172851 | None:intergenic | 25.0% |
!!! | GTTTTAGCATTAGAAAAGAT+TGG | + | chr4_4:10173089-10173108 | Msa0668860:CDS | 25.0% |
!!! | GTTTTAAAGAAGGTTTTAAG+AGG | + | chr4_4:10173164-10173183 | Msa0668860:CDS | 25.0% |
! | TAATTTATGCTTACTTCTAG+GGG | - | chr4_4:10173326-10173345 | None:intergenic | 25.0% |
! | GTAATTTATGCTTACTTCTA+GGG | - | chr4_4:10173327-10173346 | None:intergenic | 25.0% |
!! | ATCAAATCACAAACATTTTC+TGG | + | chr4_4:10173620-10173639 | Msa0668860:CDS | 25.0% |
!! | TCAAATCACAAACATTTTCT+GGG | + | chr4_4:10173621-10173640 | Msa0668860:CDS | 25.0% |
!! | AAAAATGGGCTTTAGTATAT+GGG | + | chr4_4:10174151-10174170 | Msa0668860:CDS | 25.0% |
!!! | AGTTTTAGCAAGAAAATTGA+TGG | + | chr4_4:10174833-10174852 | Msa0668860:CDS | 25.0% |
! | TCTTGATATGTATGTGAAAA+TGG | - | chr4_4:10175237-10175256 | None:intergenic | 25.0% |
! | AATGACATGAATAACGAAAA+TGG | + | chr4_4:10175399-10175418 | Msa0668860:CDS | 25.0% |
!!! | ATCAGTGGTATATTTTTTGT+TGG | + | chr4_4:10175626-10175645 | Msa0668860:intron | 25.0% |
ACACACTACAAGAAAACAAA+GGG | + | chr4_4:10172708-10172727 | Msa0668860:intron | 30.0% | |
GAAGATATAATCCCATATGT+TGG | + | chr4_4:10173004-10173023 | Msa0668860:CDS | 30.0% | |
AAATCTATATGCATGGTCTT+CGG | - | chr4_4:10173044-10173063 | None:intergenic | 30.0% | |
!! | AATTTATATGCTGGCTTTGT+TGG | + | chr4_4:10173067-10173086 | Msa0668860:CDS | 30.0% |
GGTAATTTATGCTTACTTCT+AGG | - | chr4_4:10173328-10173347 | None:intergenic | 30.0% | |
AGCATAAATTACCATCACAA+AGG | + | chr4_4:10173335-10173354 | Msa0668860:CDS | 30.0% | |
ATAAATTACCATCACAAAGG+AGG | + | chr4_4:10173338-10173357 | Msa0668860:CDS | 30.0% | |
TAAATTACCATCACAAAGGA+GGG | + | chr4_4:10173339-10173358 | Msa0668860:CDS | 30.0% | |
TGATGGTTGAATCCAATAAA+AGG | - | chr4_4:10173742-10173761 | None:intergenic | 30.0% | |
ATATCACACTTTCTCTATGA+TGG | - | chr4_4:10173759-10173778 | None:intergenic | 30.0% | |
! | CATAGAGAAAGTGTGATATT+TGG | + | chr4_4:10173760-10173779 | Msa0668860:CDS | 30.0% |
TGATCTGTGAAAATTGTCTT+CGG | - | chr4_4:10173868-10173887 | None:intergenic | 30.0% | |
AAAAGAATCTGATCTCTGAA+AGG | - | chr4_4:10174001-10174020 | None:intergenic | 30.0% | |
! | GATCTTGCATCCATTTATTT+TGG | - | chr4_4:10174116-10174135 | None:intergenic | 30.0% |
! | GAAAAATGGGCTTTAGTATA+TGG | + | chr4_4:10174150-10174169 | Msa0668860:CDS | 30.0% |
GATAAATGACATGCGTTATA+AGG | + | chr4_4:10174296-10174315 | Msa0668860:CDS | 30.0% | |
ATGATATCCATATTCAATGC+AGG | - | chr4_4:10174357-10174376 | None:intergenic | 30.0% | |
ACTTTGATCTTCAGAGTTAA+AGG | - | chr4_4:10174544-10174563 | None:intergenic | 30.0% | |
!!! | TGTCGACTTTTTCAATTCAT+TGG | + | chr4_4:10174576-10174595 | Msa0668860:CDS | 30.0% |
! | CTCTTCAATATGTACTTTTG+GGG | - | chr4_4:10174657-10174676 | None:intergenic | 30.0% |
! | CCTCTTCAATATGTACTTTT+GGG | - | chr4_4:10174658-10174677 | None:intergenic | 30.0% |
! | ACCTCTTCAATATGTACTTT+TGG | - | chr4_4:10174659-10174678 | None:intergenic | 30.0% |
! | AAAAGTACATATTGAAGAGG+TGG | + | chr4_4:10174658-10174677 | Msa0668860:CDS | 30.0% |
TACACATCAACAACAAATCT+TGG | + | chr4_4:10174897-10174916 | Msa0668860:CDS | 30.0% | |
ATCATCTGTTACTATCTCAT+TGG | - | chr4_4:10174940-10174959 | None:intergenic | 30.0% | |
!!! | ATCCTTCTTTTTTATACCCA+TGG | - | chr4_4:10174982-10175001 | None:intergenic | 30.0% |
ATGGGTATAAAAAAGAAGGA+TGG | + | chr4_4:10174981-10175000 | Msa0668860:CDS | 30.0% | |
TTATGTAGTACCTGCATAAT+TGG | - | chr4_4:10175116-10175135 | None:intergenic | 30.0% | |
AATAACGAAAATGGAGAACA+CGG | + | chr4_4:10175408-10175427 | Msa0668860:CDS | 30.0% | |
TTGAGTGCTTAAAATACCAA+AGG | - | chr4_4:10175558-10175577 | None:intergenic | 30.0% | |
!!! | GGTATATTTTTTGTTGGTGT+AGG | + | chr4_4:10175632-10175651 | Msa0668860:intron | 30.0% |
! | TAGGAATTTAGCTTACATGA+TGG | + | chr4_4:10175651-10175670 | Msa0668860:intron | 30.0% |
AGCAATGTCAATGAACCATT+AGG | + | chr4_4:10172474-10172493 | Msa0668860:CDS | 35.0% | |
GCAATGTCAATGAACCATTA+GGG | + | chr4_4:10172475-10172494 | Msa0668860:CDS | 35.0% | |
AGAAATTGATCGATAGGAGT+TGG | + | chr4_4:10172597-10172616 | Msa0668860:intron | 35.0% | |
CACACACTACAAGAAAACAA+AGG | + | chr4_4:10172707-10172726 | Msa0668860:intron | 35.0% | |
TATAATCCCATATGTTGGCA+TGG | + | chr4_4:10173009-10173028 | Msa0668860:CDS | 35.0% | |
!! | TGATGAAAAAGTGTCTCGTA+AGG | + | chr4_4:10173198-10173217 | Msa0668860:CDS | 35.0% |
TAGCACATGTTGTCATTAGT+CGG | + | chr4_4:10173239-10173258 | Msa0668860:CDS | 35.0% | |
GAGTTTATGAGTCAACACAT+TGG | + | chr4_4:10173430-10173449 | Msa0668860:CDS | 35.0% | |
TTTATGAGTCAACACATTGG+AGG | + | chr4_4:10173433-10173452 | Msa0668860:CDS | 35.0% | |
TTATGAGTCAACACATTGGA+GGG | + | chr4_4:10173434-10173453 | Msa0668860:CDS | 35.0% | |
GTCGTAGATTCTTATTAGTG+CGG | - | chr4_4:10173711-10173730 | None:intergenic | 35.0% | |
! | CGACTATTTGCTCCTTTTAT+TGG | + | chr4_4:10173727-10173746 | Msa0668860:CDS | 35.0% |
AAATTGCAGCATCATTTGAG+TGG | + | chr4_4:10173803-10173822 | Msa0668860:CDS | 35.0% | |
! | ACTTTTCTTAAGGCAATGTG+TGG | + | chr4_4:10173835-10173854 | Msa0668860:CDS | 35.0% |
CGATGATATGTTTCACTTTC+AGG | - | chr4_4:10173928-10173947 | None:intergenic | 35.0% | |
CATATCATCGTTTATGCTTG+TGG | + | chr4_4:10173938-10173957 | Msa0668860:CDS | 35.0% | |
! | GAGATCAGATTCTTTTGCTA+TGG | + | chr4_4:10174005-10174024 | Msa0668860:CDS | 35.0% |
ACGACCTTCACCAAAATAAA+TGG | + | chr4_4:10174103-10174122 | Msa0668860:CDS | 35.0% | |
!!! | GCATCCATTTATTTTGGTGA+AGG | - | chr4_4:10174110-10174129 | None:intergenic | 35.0% |
CAATTAAGTGAGAGCTTCAA+TGG | + | chr4_4:10174207-10174226 | Msa0668860:CDS | 35.0% | |
CGAACTAGAGAAAAGATAAC+TGG | - | chr4_4:10174411-10174430 | None:intergenic | 35.0% | |
!! | GTTATCTTTTCTCTAGTTCG+TGG | + | chr4_4:10174411-10174430 | Msa0668860:CDS | 35.0% |
!!! | TAAGTTTTTTCAGGGACATG+AGG | + | chr4_4:10174505-10174524 | Msa0668860:CDS | 35.0% |
! | CCCAAAAGTACATATTGAAG+AGG | + | chr4_4:10174655-10174674 | Msa0668860:CDS | 35.0% |
AGAAGATCCAAAGATAGTTG+TGG | + | chr4_4:10174734-10174753 | Msa0668860:CDS | 35.0% | |
ATCAACAACAAATCTTGGTG+AGG | + | chr4_4:10174902-10174921 | Msa0668860:CDS | 35.0% | |
AGCCATGGGTATAAAAAAGA+AGG | + | chr4_4:10174977-10174996 | Msa0668860:CDS | 35.0% | |
GATGGTAAATCACGCATAAA+AGG | + | chr4_4:10174999-10175018 | Msa0668860:CDS | 35.0% | |
! | TTTTTCTCCACACAACTCTT+AGG | - | chr4_4:10175029-10175048 | None:intergenic | 35.0% |
AGCTAGTATTAGTACATCAC+AGG | + | chr4_4:10175266-10175285 | Msa0668860:CDS | 35.0% | |
AGTATTAGTACATCACAGGT+TGG | + | chr4_4:10175270-10175289 | Msa0668860:intron | 35.0% | |
ATCATATCCCCTTCAAATGT+AGG | + | chr4_4:10175374-10175393 | Msa0668860:intron | 35.0% | |
! | TCATTAGCCTACATTTGAAG+GGG | - | chr4_4:10175384-10175403 | None:intergenic | 35.0% |
! | GTCATTAGCCTACATTTGAA+GGG | - | chr4_4:10175385-10175404 | None:intergenic | 35.0% |
! | TGTCATTAGCCTACATTTGA+AGG | - | chr4_4:10175386-10175405 | None:intergenic | 35.0% |
ATAACGAAAATGGAGAACAC+GGG | + | chr4_4:10175409-10175428 | Msa0668860:CDS | 35.0% | |
TGAAATTGAAACTCAGCAGA+TGG | - | chr4_4:10175528-10175547 | None:intergenic | 35.0% | |
TCAATTTCAACCAAGTCCTT+TGG | + | chr4_4:10175539-10175558 | Msa0668860:CDS | 35.0% | |
GCTTAAAATACCAAAGGACT+TGG | - | chr4_4:10175552-10175571 | None:intergenic | 35.0% | |
CAAACTCCATGCCAACATAT+GGG | - | chr4_4:10173018-10173037 | None:intergenic | 40.0% | |
TCAAACTCCATGCCAACATA+TGG | - | chr4_4:10173019-10173038 | None:intergenic | 40.0% | |
TCTCGTAAGGATATCAGAAC+TGG | + | chr4_4:10173211-10173230 | Msa0668860:CDS | 40.0% | |
AGCACATGTTGTCATTAGTC+GGG | + | chr4_4:10173240-10173259 | Msa0668860:CDS | 40.0% | |
GTAGAAATGGCAAATCGATC+TGG | + | chr4_4:10173385-10173404 | Msa0668860:CDS | 40.0% | |
GCAATCATTTAACTGCCAAG+AGG | + | chr4_4:10173491-10173510 | Msa0668860:CDS | 40.0% | |
TTTAACTGCCAAGAGGATGA+AGG | + | chr4_4:10173498-10173517 | Msa0668860:CDS | 40.0% | |
CTTCATTTCCTTCATCCTCT+TGG | - | chr4_4:10173509-10173528 | None:intergenic | 40.0% | |
CAAGAGGATGAAGGAAATGA+AGG | + | chr4_4:10173507-10173526 | Msa0668860:CDS | 40.0% | |
AGGATGAAGGAAATGAAGGA+AGG | + | chr4_4:10173511-10173530 | Msa0668860:CDS | 40.0% | |
TTTCTGGGCAGATGCTAAAA+TGG | + | chr4_4:10173636-10173655 | Msa0668860:CDS | 40.0% | |
! | GGCAGATGCTAAAATGGTTT+TGG | + | chr4_4:10173642-10173661 | Msa0668860:CDS | 40.0% |
!!! | CTCTGAAATTGCTTTTGCCA+TGG | - | chr4_4:10173899-10173918 | None:intergenic | 40.0% |
CATGGCAAAAGCAATTTCAG+AGG | + | chr4_4:10173897-10173916 | Msa0668860:CDS | 40.0% | |
TATTCAATGCAGGCATCTTC+TGG | - | chr4_4:10174347-10174366 | None:intergenic | 40.0% | |
GAAGATGCCTGCATTGAATA+TGG | + | chr4_4:10174347-10174366 | Msa0668860:CDS | 40.0% | |
CGATTTGCCACAACTATCTT+TGG | - | chr4_4:10174744-10174763 | None:intergenic | 40.0% | |
TGCAGTAGGAATATCAAGCA+AGG | + | chr4_4:10174785-10174804 | Msa0668860:CDS | 40.0% | |
TACCACTGTATCAAAAGCCA+TGG | + | chr4_4:10174962-10174981 | Msa0668860:CDS | 40.0% | |
ACCACTGTATCAAAAGCCAT+GGG | + | chr4_4:10174963-10174982 | Msa0668860:CDS | 40.0% | |
GTAAATCACGCATAAAAGGC+AGG | + | chr4_4:10175003-10175022 | Msa0668860:CDS | 40.0% | |
AACCATCATGCCAATTATGC+AGG | + | chr4_4:10175103-10175122 | Msa0668860:CDS | 40.0% | |
TACCTGCATAATTGGCATGA+TGG | - | chr4_4:10175108-10175127 | None:intergenic | 40.0% | |
TAACGAAAATGGAGAACACG+GGG | + | chr4_4:10175410-10175429 | Msa0668860:CDS | 40.0% | |
CATTCTACCGATGCTTATCA+TGG | + | chr4_4:10175444-10175463 | Msa0668860:CDS | 40.0% | |
CTCTTGTCCATGATAAGCAT+CGG | - | chr4_4:10175454-10175473 | None:intergenic | 40.0% | |
! | TACATGATGGCTTGTCTTCA+TGG | + | chr4_4:10175664-10175683 | Msa0668860:CDS | 40.0% |
! | ACATGATGGCTTGTCTTCAT+GGG | + | chr4_4:10175665-10175684 | Msa0668860:CDS | 40.0% |
GTCAATGAACCATTAGGGAG+TGG | + | chr4_4:10172480-10172499 | Msa0668860:CDS | 45.0% | |
! | ATCGATAGGAGTTGGTCAGT+AGG | + | chr4_4:10172605-10172624 | Msa0668860:intron | 45.0% |
GTTGGTCAGTAGGTTAGAGA+TGG | + | chr4_4:10172615-10172634 | Msa0668860:intron | 45.0% | |
GTCATTAGTCGGGAATCAAG+TGG | + | chr4_4:10173250-10173269 | Msa0668860:CDS | 45.0% | |
GGGATGCAAGCTCATGATTA+TGG | - | chr4_4:10173306-10173325 | None:intergenic | 45.0% | |
TCAAGCAGCTGAGGTAGAAA+TGG | + | chr4_4:10173372-10173391 | Msa0668860:CDS | 45.0% | |
AGGATGACTTTCTTGCAGCT+TGG | + | chr4_4:10174061-10174080 | Msa0668860:CDS | 45.0% | |
! | CTCGAAGAGCATGACAACAA+AGG | - | chr4_4:10174605-10174624 | None:intergenic | 45.0% |
!! | AGAGGTGGACTAAACAAGCT+CGG | + | chr4_4:10174673-10174692 | Msa0668860:CDS | 45.0% |
! | ACCCATGGCTTTTGATACAG+TGG | - | chr4_4:10174967-10174986 | None:intergenic | 45.0% |
CTCAACAAATGTAGAGCCTC+AGG | + | chr4_4:10175500-10175519 | Msa0668860:CDS | 45.0% | |
! | CATGATGGCTTGTCTTCATG+GGG | + | chr4_4:10175666-10175685 | Msa0668860:CDS | 45.0% |
!! | AAGAAAATATATAAATTTAA+TGG | - | chr4_4:10172938-10172957 | None:intergenic | 5.0% |
GGTTTATCGCCACTCCCTAA+TGG | - | chr4_4:10172492-10172511 | None:intergenic | 50.0% | |
GCAGAAACCCTCCTTTGTGA+TGG | - | chr4_4:10173349-10173368 | None:intergenic | 50.0% | |
TGAGTCAACACATTGGAGGG+AGG | + | chr4_4:10173437-10173456 | Msa0668860:CDS | 50.0% | |
GAGTCAACACATTGGAGGGA+GGG | + | chr4_4:10173438-10173457 | Msa0668860:CDS | 50.0% | |
ATTGGAGGGAGGGAGAATGT+TGG | + | chr4_4:10173448-10173467 | Msa0668860:CDS | 50.0% | |
CACAGATCAAGATGCTGCCA+TGG | + | chr4_4:10173879-10173898 | Msa0668860:CDS | 50.0% | |
! | GGGCGAAACACATTTTCAGC+TGG | + | chr4_4:10174171-10174190 | Msa0668860:CDS | 50.0% |
TGGACTAAACAAGCTCGGAG+TGG | + | chr4_4:10174678-10174697 | Msa0668860:CDS | 50.0% | |
TGGATGTGTGCTAGACGGTA+AGG | + | chr4_4:10174698-10174717 | Msa0668860:CDS | 50.0% | |
GGATGTGTGCTAGACGGTAA+GGG | + | chr4_4:10174699-10174718 | Msa0668860:CDS | 50.0% | |
GATCTATGTCGCACTGCAGT+AGG | + | chr4_4:10174771-10174790 | Msa0668860:CDS | 50.0% | |
TCAAGCAAGGCTGCTGAAGA+TGG | + | chr4_4:10174798-10174817 | Msa0668860:CDS | 50.0% | |
GGAGAACACGGGGAAGAATT+TGG | + | chr4_4:10175420-10175439 | Msa0668860:CDS | 50.0% | |
GTCTTCATGGGGTGGAAACA+AGG | + | chr4_4:10175677-10175696 | Msa0668860:CDS | 50.0% | |
TTCTGCTGCTCAAGCAGCTG+AGG | + | chr4_4:10173363-10173382 | Msa0668860:CDS | 55.0% | |
CGGAGTGGATGTGTGCTAGA+CGG | + | chr4_4:10174693-10174712 | Msa0668860:CDS | 55.0% | |
AGGCAGGCCTAAGAGTTGTG+TGG | + | chr4_4:10175019-10175038 | Msa0668860:CDS | 55.0% | |
AACTCAGCAGATGGTGCCTG+AGG | - | chr4_4:10175519-10175538 | None:intergenic | 55.0% | |
! | GATGGCTTGTCTTCATGGGG+TGG | + | chr4_4:10175669-10175688 | Msa0668860:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 10172450 | 10175710 | 10172450 | ID=Msa0668860;Name=Msa0668860 |
chr4_4 | mRNA | 10172450 | 10175710 | 10172450 | ID=Msa0668860-mRNA-1;Parent=Msa0668860;Name=Msa0668860-mRNA-1;_AED=0.43;_eAED=0.44;_QI=0|0|0|0.2|1|1|5|0|841 |
chr4_4 | exon | 10172450 | 10172534 | 10172450 | ID=Msa0668860-mRNA-1:exon:3086;Parent=Msa0668860-mRNA-1 |
chr4_4 | exon | 10172966 | 10175124 | 10172966 | ID=Msa0668860-mRNA-1:exon:3087;Parent=Msa0668860-mRNA-1 |
chr4_4 | exon | 10175228 | 10175287 | 10175228 | ID=Msa0668860-mRNA-1:exon:3088;Parent=Msa0668860-mRNA-1 |
chr4_4 | exon | 10175396 | 10175560 | 10175396 | ID=Msa0668860-mRNA-1:exon:3089;Parent=Msa0668860-mRNA-1 |
chr4_4 | exon | 10175654 | 10175710 | 10175654 | ID=Msa0668860-mRNA-1:exon:3090;Parent=Msa0668860-mRNA-1 |
chr4_4 | CDS | 10172450 | 10172534 | 10172450 | ID=Msa0668860-mRNA-1:cds;Parent=Msa0668860-mRNA-1 |
chr4_4 | CDS | 10172966 | 10175124 | 10172966 | ID=Msa0668860-mRNA-1:cds;Parent=Msa0668860-mRNA-1 |
chr4_4 | CDS | 10175228 | 10175287 | 10175228 | ID=Msa0668860-mRNA-1:cds;Parent=Msa0668860-mRNA-1 |
chr4_4 | CDS | 10175396 | 10175560 | 10175396 | ID=Msa0668860-mRNA-1:cds;Parent=Msa0668860-mRNA-1 |
chr4_4 | CDS | 10175654 | 10175710 | 10175654 | ID=Msa0668860-mRNA-1:cds;Parent=Msa0668860-mRNA-1 |
Gene Sequence |
Protein sequence |