Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669470 | XP_024639353.1 | 58.779 | 131 | 52 | 1 | 98 | 226 | 1 | 131 | 3.01e-45 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669470 | A0A2Z6MM48 | 32.536 | 209 | 137 | 3 | 14 | 221 | 5 | 210 | 1.21e-30 | 122 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0669470 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0669470 | MtrunA17_Chr5g0393501 | 30.500 | 200 | 132 | 3 | 26 | 221 | 43 | 239 | 7.34e-25 | 98.2 |
| Msa0669470 | MtrunA17_Chr4g0044671 | 30.531 | 226 | 146 | 8 | 1 | 222 | 1 | 219 | 1.57e-22 | 91.7 |
| Msa0669470 | MtrunA17_Chr4g0034781 | 30.093 | 216 | 140 | 8 | 11 | 222 | 5 | 213 | 3.62e-19 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 55 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAATTCATCAGTGAATT+TGG | 0.083082 | 4_4:+11181443 | None:intergenic |
| ACAATGTGTCTTTAGGAATT+TGG | 0.142567 | 4_4:-11181477 | Msa0669470:intron |
| AGTCTTGAAGAGGCCGATTT+TGG | 0.191468 | 4_4:-11181708 | Msa0669470:CDS |
| CTGATTTCAATGATTTCTTA+TGG | 0.239474 | 4_4:-11180986 | Msa0669470:CDS |
| CCAACCCTTTGTTAGCTTGC+TGG | 0.262425 | 4_4:+11180875 | None:intergenic |
| TCAAATTCATCAGTGAATTT+GGG | 0.265368 | 4_4:+11181444 | None:intergenic |
| GCACATCTCCAGCCTGATAT+TGG | 0.349705 | 4_4:+11180832 | None:intergenic |
| CACATTGACCCCTTTGCAAA+TGG | 0.355395 | 4_4:-11181145 | Msa0669470:CDS |
| CTGCGTTTCAAGTTCTTTGA+TGG | 0.370866 | 4_4:-11180810 | Msa0669470:CDS |
| CTGCACGACCAGCCAATATC+AGG | 0.371998 | 4_4:-11180844 | Msa0669470:CDS |
| CTGATTCTGTTTAGCTATGT+TGG | 0.402336 | 4_4:-11181282 | Msa0669470:CDS |
| GATTATTTGACCATTGTCAT+TGG | 0.404983 | 4_4:+11180935 | None:intergenic |
| GTTACAAAGCCTCCCAAAAT+CGG | 0.425248 | 4_4:+11181695 | None:intergenic |
| CATAAGAAATCATTGAAATC+AGG | 0.427387 | 4_4:+11180987 | None:intergenic |
| ACTCTGCCACGGTTGACTAA+TGG | 0.446976 | 4_4:-11181348 | Msa0669470:CDS |
| TTGATGACGTGGGTCCAGTC+TGG | 0.455683 | 4_4:-11181425 | Msa0669470:CDS |
| GAAGTCTTGTGCTTCTGCTA+TGG | 0.476473 | 4_4:+11181196 | None:intergenic |
| TCAGCTTCATGCCTTCAAAC+TGG | 0.481449 | 4_4:+11181301 | None:intergenic |
| CAGCAAGCTAACAAAGGGTT+GGG | 0.481791 | 4_4:-11180874 | Msa0669470:CDS |
| AGTAGATTTGTTATCACACT+TGG | 0.481808 | 4_4:-11181255 | Msa0669470:CDS |
| AATTCGCATCCATTTGCAAA+GGG | 0.485601 | 4_4:+11181136 | None:intergenic |
| CACACTTGGGAATACAATTG+AGG | 0.504352 | 4_4:-11181241 | Msa0669470:CDS |
| ATCTCCAGCCTGATATTGGC+TGG | 0.512753 | 4_4:+11180836 | None:intergenic |
| CTGTTGCTTAACACCATGGC+TGG | 0.520138 | 4_4:-11181740 | None:intergenic |
| TGCGTTTCAAGTTCTTTGAT+GGG | 0.523138 | 4_4:-11180809 | Msa0669470:CDS |
| AACTGTTCATTTACCACACA+AGG | 0.524327 | 4_4:-11181675 | Msa0669470:intron |
| TTCAATGATTTCTTATGGAA+TGG | 0.526065 | 4_4:-11180981 | Msa0669470:CDS |
| CAAATTCATCAGTGAATTTG+GGG | 0.528317 | 4_4:+11181445 | None:intergenic |
| AATGGATGCGAATTCTGAAC+TGG | 0.528366 | 4_4:-11181127 | Msa0669470:intron |
| TGCCACGGTTGACTAATGGC+TGG | 0.536796 | 4_4:-11181344 | Msa0669470:CDS |
| CACTGATGAATTTGATGACG+TGG | 0.540972 | 4_4:-11181436 | Msa0669470:CDS |
| CCAGCAAGCTAACAAAGGGT+TGG | 0.541248 | 4_4:-11180875 | Msa0669470:CDS |
| ACTGCTATTCATTACCAAGT+TGG | 0.542667 | 4_4:-11180909 | Msa0669470:CDS |
| CTCACCAGCAAGCTAACAAA+GGG | 0.557320 | 4_4:-11180879 | Msa0669470:CDS |
| TGAAATTATCAAACCTTGTG+TGG | 0.563494 | 4_4:+11181662 | None:intergenic |
| TGGAATTTAATTGACGCTGA+AGG | 0.570875 | 4_4:-11181405 | Msa0669470:CDS |
| GAATTCGCATCCATTTGCAA+AGG | 0.571229 | 4_4:+11181135 | None:intergenic |
| AAGAAATCATTGAAATCAGG+TGG | 0.573987 | 4_4:+11180990 | None:intergenic |
| GCGTCAATTAAATTCCAGAC+TGG | 0.579334 | 4_4:+11181411 | None:intergenic |
| AATCATTGAAATCAGGTGGA+AGG | 0.583795 | 4_4:+11180994 | None:intergenic |
| GTAGATTTGTTATCACACTT+GGG | 0.584740 | 4_4:-11181254 | Msa0669470:CDS |
| TTGTTCCTCTCCAATGACAA+TGG | 0.585814 | 4_4:-11180945 | Msa0669470:CDS |
| ACTCACCAGCAAGCTAACAA+AGG | 0.591903 | 4_4:-11180880 | Msa0669470:CDS |
| TTTGACCATTGTCATTGGAG+AGG | 0.597349 | 4_4:+11180940 | None:intergenic |
| CAAGCTAACAAAGGGTTGGG+AGG | 0.608960 | 4_4:-11180871 | Msa0669470:CDS |
| ACAATTCAGCTACTCTGCCA+CGG | 0.617034 | 4_4:-11181359 | Msa0669470:CDS |
| CGCTGAAGGAAATTCTCATG+AGG | 0.625269 | 4_4:-11181391 | Msa0669470:CDS |
| GACTGTGCGATATCCAGCCA+TGG | 0.627340 | 4_4:+11181727 | None:intergenic |
| GTGCTTCTGCTATGGTACGT+AGG | 0.636405 | 4_4:+11181204 | None:intergenic |
| GATATCGCACAGTCTTGAAG+AGG | 0.637699 | 4_4:-11181718 | Msa0669470:CDS |
| ACGACCAGCCAATATCAGGC+TGG | 0.644275 | 4_4:-11180840 | Msa0669470:CDS |
| ATTCGCATCCATTTGCAAAG+GGG | 0.653436 | 4_4:+11181137 | None:intergenic |
| TGGTGAGTGAGTCACCAACT+TGG | 0.680717 | 4_4:+11180895 | None:intergenic |
| GTCCAGCCATTAGTCAACCG+TGG | 0.698189 | 4_4:+11181342 | None:intergenic |
| ACTGATGAATTTGATGACGT+GGG | 0.707740 | 4_4:-11181435 | Msa0669470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAATTTTCTTTGTAATTA+AGG | + | chr4_4:11180982-11181001 | None:intergenic | 15.0% |
| !!! | GTAAATTTTCTTTGTAATTA+AGG | + | chr4_4:11180982-11181001 | None:intergenic | 15.0% |
| !!! | AAGGTTTGATAATTTCATTT+CGG | - | chr4_4:11180836-11180855 | Msa0669470:CDS | 20.0% |
| !! | AATTTCTTAATGTTCAAACA+AGG | - | chr4_4:11180950-11180969 | Msa0669470:CDS | 20.0% |
| !! | TGTTTATTAAAATCTGCAAA+TGG | - | chr4_4:11181415-11181434 | Msa0669470:CDS | 20.0% |
| !! | CAACAATGAAAATTAAGATT+AGG | + | chr4_4:11181465-11181484 | None:intergenic | 20.0% |
| !!! | AAGGTTTGATAATTTCATTT+CGG | - | chr4_4:11180836-11180855 | Msa0669470:CDS | 20.0% |
| !! | AATTTCTTAATGTTCAAACA+AGG | - | chr4_4:11180950-11180969 | Msa0669470:CDS | 20.0% |
| !! | TGTTTATTAAAATCTGCAAA+TGG | - | chr4_4:11181415-11181434 | Msa0669470:CDS | 20.0% |
| !! | CAACAATGAAAATTAAGATT+AGG | + | chr4_4:11181465-11181484 | None:intergenic | 20.0% |
| ! | AGATATATACTTTGCAACAA+AGG | + | chr4_4:11180895-11180914 | None:intergenic | 25.0% |
| ! | TCAAATTCATCAGTGAATTT+GGG | + | chr4_4:11181051-11181070 | None:intergenic | 25.0% |
| ! | ATCAAATTCATCAGTGAATT+TGG | + | chr4_4:11181052-11181071 | None:intergenic | 25.0% |
| !!! | TGCAGATTTTAATAAACACA+TGG | + | chr4_4:11181413-11181432 | None:intergenic | 25.0% |
| ! | CATAAGAAATCATTGAAATC+AGG | + | chr4_4:11181508-11181527 | None:intergenic | 25.0% |
| ! | CTGATTTCAATGATTTCTTA+TGG | - | chr4_4:11181506-11181525 | Msa0669470:intron | 25.0% |
| ! | TTCAATGATTTCTTATGGAA+TGG | - | chr4_4:11181511-11181530 | Msa0669470:intron | 25.0% |
| ! | AGATATATACTTTGCAACAA+AGG | + | chr4_4:11180895-11180914 | None:intergenic | 25.0% |
| ! | TCAAATTCATCAGTGAATTT+GGG | + | chr4_4:11181051-11181070 | None:intergenic | 25.0% |
| ! | ATCAAATTCATCAGTGAATT+TGG | + | chr4_4:11181052-11181071 | None:intergenic | 25.0% |
| !!! | TGCAGATTTTAATAAACACA+TGG | + | chr4_4:11181413-11181432 | None:intergenic | 25.0% |
| ! | CATAAGAAATCATTGAAATC+AGG | + | chr4_4:11181508-11181527 | None:intergenic | 25.0% |
| ! | CTGATTTCAATGATTTCTTA+TGG | - | chr4_4:11181506-11181525 | Msa0669470:intron | 25.0% |
| ! | TTCAATGATTTCTTATGGAA+TGG | - | chr4_4:11181511-11181530 | Msa0669470:intron | 25.0% |
| TGAAATTATCAAACCTTGTG+TGG | + | chr4_4:11180833-11180852 | None:intergenic | 30.0% | |
| ! | ACAATGTGTCTTTAGGAATT+TGG | - | chr4_4:11181015-11181034 | Msa0669470:intron | 30.0% |
| CAAATTCATCAGTGAATTTG+GGG | + | chr4_4:11181050-11181069 | None:intergenic | 30.0% | |
| ! | AGACAATTTTACCAGTTTGA+AGG | - | chr4_4:11181180-11181199 | Msa0669470:CDS | 30.0% |
| !! | AGTAGATTTGTTATCACACT+TGG | - | chr4_4:11181237-11181256 | Msa0669470:CDS | 30.0% |
| !! | GTAGATTTGTTATCACACTT+GGG | - | chr4_4:11181238-11181257 | Msa0669470:CDS | 30.0% |
| TTTCATTGTTGTCTAAATGC+AGG | - | chr4_4:11181474-11181493 | Msa0669470:intron | 30.0% | |
| AAGAAATCATTGAAATCAGG+TGG | + | chr4_4:11181505-11181524 | None:intergenic | 30.0% | |
| GATTATTTGACCATTGTCAT+TGG | + | chr4_4:11181560-11181579 | None:intergenic | 30.0% | |
| TGAAATTATCAAACCTTGTG+TGG | + | chr4_4:11180833-11180852 | None:intergenic | 30.0% | |
| ! | ACAATGTGTCTTTAGGAATT+TGG | - | chr4_4:11181015-11181034 | Msa0669470:intron | 30.0% |
| CAAATTCATCAGTGAATTTG+GGG | + | chr4_4:11181050-11181069 | None:intergenic | 30.0% | |
| ! | AGACAATTTTACCAGTTTGA+AGG | - | chr4_4:11181180-11181199 | Msa0669470:CDS | 30.0% |
| !! | AGTAGATTTGTTATCACACT+TGG | - | chr4_4:11181237-11181256 | Msa0669470:CDS | 30.0% |
| !! | GTAGATTTGTTATCACACTT+GGG | - | chr4_4:11181238-11181257 | Msa0669470:CDS | 30.0% |
| TTTCATTGTTGTCTAAATGC+AGG | - | chr4_4:11181474-11181493 | Msa0669470:intron | 30.0% | |
| AAGAAATCATTGAAATCAGG+TGG | + | chr4_4:11181505-11181524 | None:intergenic | 30.0% | |
| GATTATTTGACCATTGTCAT+TGG | + | chr4_4:11181560-11181579 | None:intergenic | 30.0% | |
| AACTGTTCATTTACCACACA+AGG | - | chr4_4:11180817-11180836 | Msa0669470:CDS | 35.0% | |
| CAACTCAACAATGTGTCTTT+AGG | - | chr4_4:11181008-11181027 | Msa0669470:intron | 35.0% | |
| !! | ACTGATGAATTTGATGACGT+GGG | - | chr4_4:11181057-11181076 | Msa0669470:intron | 35.0% |
| TGGAATTTAATTGACGCTGA+AGG | - | chr4_4:11181087-11181106 | Msa0669470:intron | 35.0% | |
| CTGATTCTGTTTAGCTATGT+TGG | - | chr4_4:11181210-11181229 | Msa0669470:CDS | 35.0% | |
| AATTCGCATCCATTTGCAAA+GGG | + | chr4_4:11181359-11181378 | None:intergenic | 35.0% | |
| AATCATTGAAATCAGGTGGA+AGG | + | chr4_4:11181501-11181520 | None:intergenic | 35.0% | |
| ACTGCTATTCATTACCAAGT+TGG | - | chr4_4:11181583-11181602 | Msa0669470:intron | 35.0% | |
| !! | TGCGTTTCAAGTTCTTTGAT+GGG | - | chr4_4:11181683-11181702 | Msa0669470:CDS | 35.0% |
| AACTGTTCATTTACCACACA+AGG | - | chr4_4:11180817-11180836 | Msa0669470:CDS | 35.0% | |
| CAACTCAACAATGTGTCTTT+AGG | - | chr4_4:11181008-11181027 | Msa0669470:intron | 35.0% | |
| !! | ACTGATGAATTTGATGACGT+GGG | - | chr4_4:11181057-11181076 | Msa0669470:intron | 35.0% |
| TGGAATTTAATTGACGCTGA+AGG | - | chr4_4:11181087-11181106 | Msa0669470:intron | 35.0% | |
| CTGATTCTGTTTAGCTATGT+TGG | - | chr4_4:11181210-11181229 | Msa0669470:CDS | 35.0% | |
| AATTCGCATCCATTTGCAAA+GGG | + | chr4_4:11181359-11181378 | None:intergenic | 35.0% | |
| AATCATTGAAATCAGGTGGA+AGG | + | chr4_4:11181501-11181520 | None:intergenic | 35.0% | |
| ACTGCTATTCATTACCAAGT+TGG | - | chr4_4:11181583-11181602 | Msa0669470:intron | 35.0% | |
| !! | TGCGTTTCAAGTTCTTTGAT+GGG | - | chr4_4:11181683-11181702 | Msa0669470:CDS | 35.0% |
| GTTACAAAGCCTCCCAAAAT+CGG | + | chr4_4:11180800-11180819 | None:intergenic | 40.0% | |
| !! | CACTGATGAATTTGATGACG+TGG | - | chr4_4:11181056-11181075 | Msa0669470:intron | 40.0% |
| GCGTCAATTAAATTCCAGAC+TGG | + | chr4_4:11181084-11181103 | None:intergenic | 40.0% | |
| CACACTTGGGAATACAATTG+AGG | - | chr4_4:11181251-11181270 | Msa0669470:CDS | 40.0% | |
| ATTCGCATCCATTTGCAAAG+GGG | + | chr4_4:11181358-11181377 | None:intergenic | 40.0% | |
| GAATTCGCATCCATTTGCAA+AGG | + | chr4_4:11181360-11181379 | None:intergenic | 40.0% | |
| AATGGATGCGAATTCTGAAC+TGG | - | chr4_4:11181365-11181384 | Msa0669470:CDS | 40.0% | |
| TTGTTCCTCTCCAATGACAA+TGG | - | chr4_4:11181547-11181566 | Msa0669470:intron | 40.0% | |
| TTTGACCATTGTCATTGGAG+AGG | + | chr4_4:11181555-11181574 | None:intergenic | 40.0% | |
| !! | CTGCGTTTCAAGTTCTTTGA+TGG | - | chr4_4:11181682-11181701 | Msa0669470:CDS | 40.0% |
| GTTACAAAGCCTCCCAAAAT+CGG | + | chr4_4:11180800-11180819 | None:intergenic | 40.0% | |
| !! | CACTGATGAATTTGATGACG+TGG | - | chr4_4:11181056-11181075 | Msa0669470:intron | 40.0% |
| GCGTCAATTAAATTCCAGAC+TGG | + | chr4_4:11181084-11181103 | None:intergenic | 40.0% | |
| CACACTTGGGAATACAATTG+AGG | - | chr4_4:11181251-11181270 | Msa0669470:CDS | 40.0% | |
| ATTCGCATCCATTTGCAAAG+GGG | + | chr4_4:11181358-11181377 | None:intergenic | 40.0% | |
| GAATTCGCATCCATTTGCAA+AGG | + | chr4_4:11181360-11181379 | None:intergenic | 40.0% | |
| AATGGATGCGAATTCTGAAC+TGG | - | chr4_4:11181365-11181384 | Msa0669470:CDS | 40.0% | |
| TTGTTCCTCTCCAATGACAA+TGG | - | chr4_4:11181547-11181566 | Msa0669470:intron | 40.0% | |
| TTTGACCATTGTCATTGGAG+AGG | + | chr4_4:11181555-11181574 | None:intergenic | 40.0% | |
| !! | CTGCGTTTCAAGTTCTTTGA+TGG | - | chr4_4:11181682-11181701 | Msa0669470:CDS | 40.0% |
| GATATCGCACAGTCTTGAAG+AGG | - | chr4_4:11180774-11180793 | Msa0669470:CDS | 45.0% | |
| !! | AGTCTTGAAGAGGCCGATTT+TGG | - | chr4_4:11180784-11180803 | Msa0669470:CDS | 45.0% |
| !! | GTCTTGAAGAGGCCGATTTT+GGG | - | chr4_4:11180785-11180804 | Msa0669470:CDS | 45.0% |
| CGCTGAAGGAAATTCTCATG+AGG | - | chr4_4:11181101-11181120 | Msa0669470:intron | 45.0% | |
| ACAATTCAGCTACTCTGCCA+CGG | - | chr4_4:11181133-11181152 | Msa0669470:CDS | 45.0% | |
| TCAGCTTCATGCCTTCAAAC+TGG | + | chr4_4:11181194-11181213 | None:intergenic | 45.0% | |
| ! | GAAGTCTTGTGCTTCTGCTA+TGG | + | chr4_4:11181299-11181318 | None:intergenic | 45.0% |
| CACATTGACCCCTTTGCAAA+TGG | - | chr4_4:11181347-11181366 | Msa0669470:CDS | 45.0% | |
| ACTCACCAGCAAGCTAACAA+AGG | - | chr4_4:11181612-11181631 | Msa0669470:intron | 45.0% | |
| CTCACCAGCAAGCTAACAAA+GGG | - | chr4_4:11181613-11181632 | Msa0669470:intron | 45.0% | |
| CAGCAAGCTAACAAAGGGTT+GGG | - | chr4_4:11181618-11181637 | Msa0669470:intron | 45.0% | |
| GATATCGCACAGTCTTGAAG+AGG | - | chr4_4:11180774-11180793 | Msa0669470:CDS | 45.0% | |
| !! | AGTCTTGAAGAGGCCGATTT+TGG | - | chr4_4:11180784-11180803 | Msa0669470:CDS | 45.0% |
| !! | GTCTTGAAGAGGCCGATTTT+GGG | - | chr4_4:11180785-11180804 | Msa0669470:CDS | 45.0% |
| CGCTGAAGGAAATTCTCATG+AGG | - | chr4_4:11181101-11181120 | Msa0669470:intron | 45.0% | |
| ACAATTCAGCTACTCTGCCA+CGG | - | chr4_4:11181133-11181152 | Msa0669470:CDS | 45.0% | |
| TCAGCTTCATGCCTTCAAAC+TGG | + | chr4_4:11181194-11181213 | None:intergenic | 45.0% | |
| ! | GAAGTCTTGTGCTTCTGCTA+TGG | + | chr4_4:11181299-11181318 | None:intergenic | 45.0% |
| CACATTGACCCCTTTGCAAA+TGG | - | chr4_4:11181347-11181366 | Msa0669470:CDS | 45.0% | |
| ACTCACCAGCAAGCTAACAA+AGG | - | chr4_4:11181612-11181631 | Msa0669470:intron | 45.0% | |
| CTCACCAGCAAGCTAACAAA+GGG | - | chr4_4:11181613-11181632 | Msa0669470:intron | 45.0% | |
| CAGCAAGCTAACAAAGGGTT+GGG | - | chr4_4:11181618-11181637 | Msa0669470:intron | 45.0% | |
| !! | TTGAAGAGGCCGATTTTGGG+AGG | - | chr4_4:11180788-11180807 | Msa0669470:CDS | 50.0% |
| ACTCTGCCACGGTTGACTAA+TGG | - | chr4_4:11181144-11181163 | Msa0669470:CDS | 50.0% | |
| GTGCTTCTGCTATGGTACGT+AGG | + | chr4_4:11181291-11181310 | None:intergenic | 50.0% | |
| TGGTGAGTGAGTCACCAACT+TGG | + | chr4_4:11181600-11181619 | None:intergenic | 50.0% | |
| !! | CCAACCCTTTGTTAGCTTGC+TGG | + | chr4_4:11181620-11181639 | None:intergenic | 50.0% |
| CCAGCAAGCTAACAAAGGGT+TGG | - | chr4_4:11181617-11181636 | Msa0669470:intron | 50.0% | |
| CAAGCTAACAAAGGGTTGGG+AGG | - | chr4_4:11181621-11181640 | Msa0669470:intron | 50.0% | |
| ATCTCCAGCCTGATATTGGC+TGG | + | chr4_4:11181659-11181678 | None:intergenic | 50.0% | |
| GCACATCTCCAGCCTGATAT+TGG | + | chr4_4:11181663-11181682 | None:intergenic | 50.0% | |
| !! | TTGAAGAGGCCGATTTTGGG+AGG | - | chr4_4:11180788-11180807 | Msa0669470:CDS | 50.0% |
| ACTCTGCCACGGTTGACTAA+TGG | - | chr4_4:11181144-11181163 | Msa0669470:CDS | 50.0% | |
| GTGCTTCTGCTATGGTACGT+AGG | + | chr4_4:11181291-11181310 | None:intergenic | 50.0% | |
| TGGTGAGTGAGTCACCAACT+TGG | + | chr4_4:11181600-11181619 | None:intergenic | 50.0% | |
| !! | CCAACCCTTTGTTAGCTTGC+TGG | + | chr4_4:11181620-11181639 | None:intergenic | 50.0% |
| CCAGCAAGCTAACAAAGGGT+TGG | - | chr4_4:11181617-11181636 | Msa0669470:intron | 50.0% | |
| CAAGCTAACAAAGGGTTGGG+AGG | - | chr4_4:11181621-11181640 | Msa0669470:intron | 50.0% | |
| ATCTCCAGCCTGATATTGGC+TGG | + | chr4_4:11181659-11181678 | None:intergenic | 50.0% | |
| GCACATCTCCAGCCTGATAT+TGG | + | chr4_4:11181663-11181682 | None:intergenic | 50.0% | |
| !! | TTGATGACGTGGGTCCAGTC+TGG | - | chr4_4:11181067-11181086 | Msa0669470:intron | 55.0% |
| TGCCACGGTTGACTAATGGC+TGG | - | chr4_4:11181148-11181167 | Msa0669470:CDS | 55.0% | |
| GTCCAGCCATTAGTCAACCG+TGG | + | chr4_4:11181153-11181172 | None:intergenic | 55.0% | |
| CTGCACGACCAGCCAATATC+AGG | - | chr4_4:11181648-11181667 | Msa0669470:intron | 55.0% | |
| ACGACCAGCCAATATCAGGC+TGG | - | chr4_4:11181652-11181671 | Msa0669470:intron | 55.0% | |
| !! | TTGATGACGTGGGTCCAGTC+TGG | - | chr4_4:11181067-11181086 | Msa0669470:intron | 55.0% |
| TGCCACGGTTGACTAATGGC+TGG | - | chr4_4:11181148-11181167 | Msa0669470:CDS | 55.0% | |
| GTCCAGCCATTAGTCAACCG+TGG | + | chr4_4:11181153-11181172 | None:intergenic | 55.0% | |
| CTGCACGACCAGCCAATATC+AGG | - | chr4_4:11181648-11181667 | Msa0669470:intron | 55.0% | |
| ACGACCAGCCAATATCAGGC+TGG | - | chr4_4:11181652-11181671 | Msa0669470:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 11180767 | 11181747 | 11180767 | ID=Msa0669470;Name=Msa0669470 |
| chr4_4 | mRNA | 11180767 | 11181747 | 11180767 | ID=Msa0669470-mRNA-1;Parent=Msa0669470;Name=Msa0669470-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0|0.66|1|1|3|0|226 |
| chr4_4 | exon | 11181676 | 11181747 | 11181676 | ID=Msa0669470-mRNA-1:exon:3357;Parent=Msa0669470-mRNA-1 |
| chr4_4 | exon | 11181128 | 11181484 | 11181128 | ID=Msa0669470-mRNA-1:exon:3356;Parent=Msa0669470-mRNA-1 |
| chr4_4 | exon | 11180767 | 11181018 | 11180767 | ID=Msa0669470-mRNA-1:exon:3355;Parent=Msa0669470-mRNA-1 |
| chr4_4 | CDS | 11181676 | 11181747 | 11181676 | ID=Msa0669470-mRNA-1:cds;Parent=Msa0669470-mRNA-1 |
| chr4_4 | CDS | 11181128 | 11181484 | 11181128 | ID=Msa0669470-mRNA-1:cds;Parent=Msa0669470-mRNA-1 |
| chr4_4 | CDS | 11180767 | 11181018 | 11180767 | ID=Msa0669470-mRNA-1:cds;Parent=Msa0669470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
