Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670720 | XP_013455007.2 | 87.821 | 312 | 37 | 1 | 1 | 311 | 1 | 312 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670720 | sp|Q8L9Y3|ARR14_ARATH | 38.431 | 255 | 118 | 5 | 13 | 230 | 10 | 262 | 1.14e-53 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670720 | A0A396I0H3 | 87.821 | 312 | 37 | 1 | 1 | 311 | 1 | 312 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0670720 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670720 | MtrunA17_Chr4g0009851 | 87.821 | 312 | 37 | 1 | 1 | 311 | 1 | 312 | 0.0 | 566 |
| Msa0670720 | MtrunA17_Chr4g0009981 | 84.942 | 259 | 39 | 0 | 53 | 311 | 1 | 259 | 4.32e-168 | 467 |
| Msa0670720 | MtrunA17_Chr4g0009901 | 71.667 | 240 | 68 | 0 | 1 | 240 | 1 | 240 | 3.14e-121 | 348 |
| Msa0670720 | MtrunA17_Chr4g0011071 | 78.102 | 137 | 30 | 0 | 55 | 191 | 35 | 171 | 1.77e-75 | 229 |
| Msa0670720 | MtrunA17_Chr6g0471041 | 46.382 | 304 | 142 | 8 | 1 | 294 | 1 | 293 | 4.50e-73 | 231 |
| Msa0670720 | MtrunA17_Chr1g0161431 | 36.667 | 360 | 163 | 8 | 13 | 307 | 14 | 373 | 1.27e-65 | 217 |
| Msa0670720 | MtrunA17_Chr4g0009991 | 76.923 | 117 | 26 | 1 | 101 | 217 | 1 | 116 | 1.33e-57 | 181 |
| Msa0670720 | MtrunA17_Chr3g0123131 | 40.254 | 236 | 113 | 3 | 13 | 220 | 16 | 251 | 4.49e-57 | 193 |
| Msa0670720 | MtrunA17_Chr4g0067981 | 40.598 | 234 | 113 | 2 | 13 | 220 | 34 | 267 | 1.37e-55 | 191 |
| Msa0670720 | MtrunA17_Chr8g0376881 | 39.744 | 234 | 115 | 3 | 13 | 220 | 28 | 261 | 2.69e-55 | 187 |
| Msa0670720 | MtrunA17_Chr2g0294911 | 41.379 | 232 | 112 | 2 | 13 | 220 | 32 | 263 | 3.73e-55 | 189 |
| Msa0670720 | MtrunA17_Chr7g0275401 | 37.295 | 244 | 124 | 3 | 13 | 227 | 8 | 251 | 8.47e-51 | 169 |
| Msa0670720 | MtrunA17_Chr1g0149841 | 39.407 | 236 | 115 | 3 | 13 | 220 | 8 | 243 | 4.39e-49 | 170 |
| Msa0670720 | MtrunA17_Chr8g0391911 | 40.000 | 230 | 112 | 3 | 14 | 217 | 13 | 242 | 4.03e-48 | 161 |
| Msa0670720 | MtrunA17_Chr8g0383961 | 42.481 | 266 | 115 | 8 | 1 | 254 | 1 | 240 | 7.75e-48 | 161 |
| Msa0670720 | MtrunA17_Chr3g0137101 | 38.333 | 240 | 116 | 3 | 13 | 220 | 11 | 250 | 3.76e-47 | 167 |
| Msa0670720 | MtrunA17_Chr7g0275891 | 33.670 | 297 | 152 | 7 | 13 | 266 | 8 | 302 | 2.28e-44 | 154 |
| Msa0670720 | MtrunA17_Chr5g0423031 | 73.034 | 89 | 24 | 0 | 1 | 89 | 1 | 89 | 1.37e-43 | 147 |
| Msa0670720 | MtrunA17_Chr4g0010001 | 73.034 | 89 | 24 | 0 | 1 | 89 | 1 | 89 | 4.20e-43 | 143 |
| Msa0670720 | MtrunA17_Chr1g0149851 | 33.113 | 302 | 158 | 6 | 13 | 270 | 8 | 309 | 1.86e-42 | 153 |
| Msa0670720 | MtrunA17_Chr4g0074401 | 32.794 | 247 | 138 | 4 | 13 | 231 | 20 | 266 | 3.88e-42 | 153 |
| Msa0670720 | MtrunA17_Chr4g0074411 | 33.607 | 244 | 137 | 4 | 13 | 231 | 21 | 264 | 1.01e-41 | 152 |
| Msa0670720 | MtrunA17_Chr2g0304841 | 34.127 | 252 | 129 | 4 | 13 | 227 | 21 | 272 | 3.52e-41 | 151 |
| Msa0670720 | MtrunA17_Chr3g0134461 | 39.130 | 207 | 99 | 4 | 13 | 217 | 11 | 192 | 6.62e-40 | 138 |
| Msa0670720 | MtrunA17_Chr3g0134481 | 34.389 | 221 | 107 | 3 | 4 | 223 | 4 | 187 | 9.55e-38 | 132 |
| Msa0670720 | MtrunA17_Chr6g0456631 | 43.243 | 148 | 82 | 1 | 14 | 159 | 13 | 160 | 4.46e-37 | 130 |
| Msa0670720 | MtrunA17_Chr4g0074421 | 35.912 | 181 | 94 | 3 | 59 | 217 | 2 | 182 | 4.75e-36 | 128 |
| Msa0670720 | MtrunA17_Chr1g0149831 | 37.778 | 180 | 82 | 3 | 68 | 220 | 1 | 177 | 3.40e-30 | 114 |
| Msa0670720 | MtrunA17_Chr6g0473731 | 31.319 | 182 | 107 | 3 | 89 | 257 | 10 | 186 | 1.91e-22 | 97.1 |
| Msa0670720 | MtrunA17_Chr7g0223971 | 28.169 | 213 | 97 | 4 | 91 | 254 | 1 | 206 | 1.43e-17 | 83.2 |
| Msa0670720 | MtrunA17_Chr5g0417521 | 47.826 | 69 | 31 | 2 | 168 | 231 | 15 | 83 | 1.01e-13 | 70.9 |
| Msa0670720 | MtrunA17_Chr2g0324891 | 37.363 | 91 | 55 | 1 | 136 | 224 | 127 | 217 | 1.24e-13 | 70.9 |
| Msa0670720 | MtrunA17_Chr7g0261911 | 43.011 | 93 | 48 | 3 | 159 | 249 | 253 | 342 | 1.73e-13 | 70.9 |
| Msa0670720 | MtrunA17_Chr7g0254981 | 41.758 | 91 | 50 | 2 | 166 | 255 | 48 | 136 | 2.13e-13 | 69.3 |
| Msa0670720 | MtrunA17_Chr6g0461641 | 55.556 | 54 | 23 | 1 | 168 | 220 | 42 | 95 | 5.30e-13 | 68.9 |
| Msa0670720 | MtrunA17_Chr4g0040481 | 46.552 | 58 | 31 | 0 | 167 | 224 | 157 | 214 | 6.10e-13 | 68.9 |
| Msa0670720 | MtrunA17_Chr5g0400241 | 34.940 | 83 | 54 | 0 | 167 | 249 | 310 | 392 | 1.28e-12 | 68.2 |
| Msa0670720 | MtrunA17_Chr4g0042451 | 51.852 | 54 | 25 | 1 | 168 | 220 | 17 | 70 | 1.37e-12 | 67.4 |
| Msa0670720 | MtrunA17_Chr2g0321461 | 53.704 | 54 | 24 | 1 | 168 | 220 | 45 | 98 | 2.18e-12 | 67.0 |
| Msa0670720 | MtrunA17_Chr2g0291021 | 57.407 | 54 | 22 | 1 | 168 | 220 | 49 | 102 | 5.81e-12 | 65.5 |
| Msa0670720 | MtrunA17_Chr7g0274471 | 47.222 | 72 | 36 | 2 | 168 | 237 | 218 | 289 | 1.02e-11 | 65.1 |
| Msa0670720 | MtrunA17_Chr4g0054981 | 50.000 | 54 | 27 | 0 | 167 | 220 | 309 | 362 | 1.06e-11 | 65.5 |
| Msa0670720 | MtrunA17_Chr8g0345901 | 28.689 | 122 | 83 | 2 | 14 | 131 | 36 | 157 | 1.52e-11 | 65.1 |
| Msa0670720 | MtrunA17_Chr7g0242521 | 51.429 | 70 | 25 | 3 | 155 | 220 | 5 | 69 | 2.33e-11 | 62.8 |
| Msa0670720 | MtrunA17_Chr7g0255711 | 50.000 | 54 | 27 | 0 | 167 | 220 | 90 | 143 | 2.41e-11 | 63.5 |
| Msa0670720 | MtrunA17_Chr1g0198601 | 46.575 | 73 | 31 | 2 | 149 | 220 | 199 | 264 | 3.04e-11 | 63.5 |
| Msa0670720 | MtrunA17_Chr1g0190301 | 50.000 | 64 | 30 | 2 | 159 | 220 | 165 | 228 | 3.46e-11 | 63.5 |
| Msa0670720 | MtrunA17_Chr4g0031961 | 43.478 | 69 | 38 | 1 | 156 | 224 | 120 | 187 | 3.64e-11 | 63.2 |
| Msa0670720 | MtrunA17_Chr7g0258551 | 49.123 | 57 | 28 | 1 | 165 | 220 | 209 | 265 | 3.96e-11 | 63.2 |
| Msa0670720 | MtrunA17_Chr1g0175091 | 44.118 | 68 | 35 | 2 | 154 | 220 | 246 | 311 | 5.58e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670720 | AT2G01760.1 | 38.431 | 255 | 118 | 5 | 13 | 230 | 10 | 262 | 1.16e-54 | 182 |
| Msa0670720 | AT1G67710.1 | 41.350 | 237 | 110 | 4 | 13 | 220 | 10 | 246 | 3.42e-53 | 182 |
| Msa0670720 | AT3G16857.1 | 38.583 | 254 | 110 | 6 | 13 | 220 | 36 | 289 | 1.47e-49 | 175 |
| Msa0670720 | AT3G16857.2 | 38.583 | 254 | 110 | 6 | 13 | 220 | 36 | 289 | 1.77e-49 | 175 |
| Msa0670720 | AT2G01760.2 | 34.629 | 283 | 118 | 6 | 13 | 230 | 10 | 290 | 1.23e-48 | 167 |
| Msa0670720 | AT4G31920.1 | 35.772 | 246 | 143 | 4 | 13 | 246 | 16 | 258 | 1.58e-46 | 165 |
| Msa0670720 | AT2G25180.1 | 37.768 | 233 | 119 | 5 | 13 | 220 | 16 | 247 | 2.74e-43 | 157 |
| Msa0670720 | AT5G58080.1 | 37.768 | 233 | 117 | 5 | 13 | 220 | 17 | 246 | 1.34e-39 | 147 |
| Msa0670720 | AT3G16857.3 | 37.156 | 218 | 91 | 6 | 49 | 220 | 2 | 219 | 3.86e-38 | 143 |
| Msa0670720 | AT2G01760.3 | 36.181 | 199 | 89 | 4 | 68 | 230 | 1 | 197 | 4.13e-37 | 135 |
| Msa0670720 | AT1G67710.2 | 40.884 | 181 | 79 | 3 | 68 | 220 | 1 | 181 | 4.05e-34 | 130 |
| Msa0670720 | AT5G49240.1 | 30.508 | 236 | 137 | 4 | 9 | 217 | 37 | 272 | 2.33e-30 | 116 |
| Msa0670720 | AT1G49190.1 | 26.074 | 326 | 194 | 9 | 16 | 303 | 36 | 352 | 3.70e-27 | 110 |
| Msa0670720 | AT3G62670.1 | 28.689 | 244 | 149 | 6 | 6 | 226 | 33 | 274 | 2.07e-26 | 108 |
| Msa0670720 | AT1G67710.3 | 39.752 | 161 | 69 | 3 | 88 | 220 | 12 | 172 | 4.35e-26 | 107 |
| Msa0670720 | AT5G07210.2 | 27.203 | 261 | 134 | 7 | 14 | 220 | 16 | 274 | 4.12e-24 | 102 |
| Msa0670720 | AT5G07210.1 | 26.394 | 269 | 134 | 8 | 14 | 220 | 16 | 282 | 1.36e-21 | 95.5 |
| Msa0670720 | AT2G27070.1 | 25.379 | 264 | 138 | 9 | 14 | 220 | 16 | 277 | 1.59e-18 | 86.3 |
| Msa0670720 | AT5G29000.1 | 34.161 | 161 | 90 | 5 | 103 | 254 | 123 | 276 | 1.75e-17 | 82.4 |
| Msa0670720 | AT5G29000.3 | 34.161 | 161 | 90 | 5 | 103 | 254 | 123 | 276 | 1.75e-17 | 82.4 |
| Msa0670720 | AT5G29000.2 | 34.161 | 161 | 90 | 5 | 103 | 254 | 166 | 319 | 1.92e-17 | 82.8 |
| Msa0670720 | AT5G29000.4 | 36.429 | 140 | 73 | 5 | 103 | 233 | 166 | 298 | 1.97e-17 | 81.6 |
| Msa0670720 | AT1G49190.2 | 31.933 | 119 | 80 | 1 | 16 | 133 | 36 | 154 | 6.86e-15 | 75.5 |
| Msa0670720 | AT5G44190.1 | 50.000 | 60 | 30 | 0 | 165 | 224 | 144 | 203 | 9.05e-14 | 71.6 |
| Msa0670720 | AT5G44190.2 | 50.000 | 60 | 30 | 0 | 165 | 224 | 144 | 203 | 1.10e-13 | 71.2 |
| Msa0670720 | AT3G04030.1 | 55.556 | 54 | 23 | 1 | 168 | 220 | 45 | 98 | 4.11e-13 | 69.7 |
| Msa0670720 | AT3G04030.3 | 55.556 | 54 | 23 | 1 | 168 | 220 | 45 | 98 | 4.65e-13 | 69.7 |
| Msa0670720 | AT4G28610.1 | 46.067 | 89 | 44 | 3 | 168 | 254 | 225 | 311 | 6.19e-13 | 69.3 |
| Msa0670720 | AT2G01060.1 | 50.769 | 65 | 31 | 1 | 157 | 220 | 4 | 68 | 8.80e-13 | 67.8 |
| Msa0670720 | AT5G18240.2 | 55.556 | 54 | 23 | 1 | 168 | 220 | 45 | 98 | 9.19e-13 | 68.6 |
| Msa0670720 | AT5G18240.3 | 55.556 | 54 | 23 | 1 | 168 | 220 | 45 | 98 | 9.19e-13 | 68.6 |
| Msa0670720 | AT5G18240.5 | 55.556 | 54 | 23 | 1 | 168 | 220 | 45 | 98 | 1.00e-12 | 68.6 |
| Msa0670720 | AT3G04450.1 | 42.500 | 80 | 39 | 2 | 164 | 242 | 234 | 307 | 1.02e-12 | 68.6 |
| Msa0670720 | AT5G18240.1 | 55.556 | 54 | 23 | 1 | 168 | 220 | 45 | 98 | 1.07e-12 | 68.6 |
| Msa0670720 | AT5G18240.4 | 55.556 | 54 | 23 | 1 | 168 | 220 | 45 | 98 | 1.07e-12 | 68.6 |
| Msa0670720 | AT3G04450.3 | 50.000 | 58 | 28 | 1 | 164 | 220 | 234 | 291 | 1.07e-12 | 67.8 |
| Msa0670720 | AT3G04450.4 | 42.500 | 80 | 39 | 2 | 164 | 242 | 194 | 267 | 1.43e-12 | 68.2 |
| Msa0670720 | AT3G04450.2 | 42.500 | 80 | 39 | 2 | 164 | 242 | 194 | 267 | 1.43e-12 | 68.2 |
| Msa0670720 | AT5G59570.2 | 43.056 | 72 | 38 | 1 | 149 | 220 | 125 | 193 | 2.33e-12 | 67.0 |
| Msa0670720 | AT5G59570.1 | 43.056 | 72 | 38 | 1 | 149 | 220 | 125 | 193 | 2.33e-12 | 67.0 |
| Msa0670720 | AT3G04030.2 | 52.830 | 53 | 25 | 0 | 168 | 220 | 45 | 97 | 2.51e-12 | 67.4 |
| Msa0670720 | AT5G60100.2 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.07e-12 | 67.4 |
| Msa0670720 | AT5G60100.7 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.37e-12 | 67.0 |
| Msa0670720 | AT5G60100.6 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.37e-12 | 67.0 |
| Msa0670720 | AT5G60100.4 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.37e-12 | 67.0 |
| Msa0670720 | AT5G60100.5 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.87e-12 | 67.0 |
| Msa0670720 | AT5G60100.3 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.87e-12 | 67.0 |
| Msa0670720 | AT5G60100.1 | 30.894 | 123 | 79 | 3 | 14 | 131 | 64 | 185 | 3.87e-12 | 67.0 |
| Msa0670720 | AT2G20570.1 | 48.276 | 58 | 30 | 0 | 167 | 224 | 152 | 209 | 3.91e-12 | 67.0 |
| Msa0670720 | AT3G46640.2 | 44.156 | 77 | 40 | 2 | 144 | 220 | 123 | 196 | 7.64e-12 | 65.5 |
| Msa0670720 | AT3G46640.1 | 44.156 | 77 | 40 | 2 | 144 | 220 | 123 | 196 | 7.64e-12 | 65.5 |
| Msa0670720 | AT3G46640.3 | 44.156 | 77 | 40 | 2 | 144 | 220 | 123 | 196 | 8.43e-12 | 65.5 |
| Msa0670720 | AT2G40970.1 | 50.000 | 54 | 27 | 0 | 167 | 220 | 104 | 157 | 8.96e-12 | 64.7 |
| Msa0670720 | AT1G69580.1 | 51.852 | 54 | 25 | 1 | 168 | 220 | 34 | 87 | 9.09e-12 | 65.5 |
| Msa0670720 | AT5G05090.1 | 43.529 | 85 | 36 | 3 | 136 | 220 | 61 | 133 | 9.58e-12 | 64.7 |
| Msa0670720 | AT5G24470.1 | 27.778 | 126 | 81 | 3 | 13 | 131 | 49 | 171 | 9.72e-12 | 65.9 |
| Msa0670720 | AT1G69580.2 | 51.852 | 54 | 25 | 1 | 168 | 220 | 34 | 87 | 9.94e-12 | 65.5 |
| Msa0670720 | AT4G18020.8 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.49e-11 | 65.5 |
| Msa0670720 | AT4G18020.11 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.49e-11 | 65.5 |
| Msa0670720 | AT4G18020.4 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.49e-11 | 65.5 |
| Msa0670720 | AT4G18020.5 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.49e-11 | 65.5 |
| Msa0670720 | AT4G18020.10 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.49e-11 | 65.5 |
| Msa0670720 | AT4G18020.7 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.49e-11 | 65.5 |
| Msa0670720 | AT4G18020.3 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.63e-11 | 65.1 |
| Msa0670720 | AT4G18020.2 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.63e-11 | 65.1 |
| Msa0670720 | AT4G18020.1 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.63e-11 | 65.1 |
| Msa0670720 | AT4G18020.6 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.63e-11 | 65.1 |
| Msa0670720 | AT4G18020.9 | 38.158 | 76 | 44 | 1 | 150 | 225 | 281 | 353 | 1.63e-11 | 65.1 |
| Msa0670720 | AT3G10760.1 | 50.000 | 54 | 27 | 0 | 167 | 220 | 104 | 157 | 1.88e-11 | 64.3 |
| Msa0670720 | AT2G20570.2 | 49.091 | 55 | 28 | 0 | 170 | 224 | 171 | 225 | 2.98e-11 | 64.3 |
| Msa0670720 | AT4G04605.1 | 37.624 | 101 | 51 | 3 | 166 | 264 | 12 | 102 | 4.71e-11 | 62.0 |
| Msa0670720 | AT5G06800.3 | 53.704 | 54 | 24 | 1 | 168 | 220 | 192 | 245 | 9.50e-11 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGTTGCCAGCCATTTAC+AGG | 0.283862 | 4_4:+13420168 | Msa0670720:CDS |
| GTGTAATCGATGCAATTATA+AGG | 0.312923 | 4_4:+13419346 | Msa0670720:CDS |
| ACATCTCCTCGACGAAATTA+AGG | 0.321564 | 4_4:-13419325 | None:intergenic |
| CAACAACATTGGGTGGAAAT+TGG | 0.345706 | 4_4:+13420829 | Msa0670720:CDS |
| TGAGTTGTAGGGTAACATTT+TGG | 0.373812 | 4_4:-13419586 | None:intergenic |
| GATAAATCATCATCAACATA+TGG | 0.380393 | 4_4:-13420901 | None:intergenic |
| AATGTGGGGCTTGCGAATAT+TGG | 0.385194 | 4_4:+13419762 | Msa0670720:CDS |
| CGAATATTGGACTAAGCCTT+TGG | 0.392176 | 4_4:+13419775 | Msa0670720:CDS |
| ATCAGAAGCCATGCTACATT+TGG | 0.418312 | 4_4:-13419477 | None:intergenic |
| CAAAGAAGGCCCGTTTGTCT+TGG | 0.418636 | 4_4:+13419945 | Msa0670720:CDS |
| GTTTCAAGAAAATAGAAAAC+GGG | 0.418887 | 4_4:+13419886 | Msa0670720:CDS |
| CTTTCTTTCCAACATGTTGA+AGG | 0.419409 | 4_4:-13419501 | None:intergenic |
| TGGCAACATGTTATAAGAAA+AGG | 0.422808 | 4_4:+13419821 | Msa0670720:CDS |
| TGATGGTTTGTCGGTGAAAA+GGG | 0.427097 | 4_4:-13419255 | None:intergenic |
| AAAAGTGTTGCTCATAATGT+TGG | 0.434928 | 4_4:-13420857 | None:intergenic |
| AAAAGAAACACTTGCAAAGA+AGG | 0.435703 | 4_4:+13419931 | Msa0670720:CDS |
| CAGAATTATGAAGAAAACTT+TGG | 0.439068 | 4_4:-13420777 | None:intergenic |
| TCAACATATGGGAACAAGTT+GGG | 0.453000 | 4_4:-13420889 | None:intergenic |
| ATGATGGTTTGTCGGTGAAA+AGG | 0.455733 | 4_4:-13419256 | None:intergenic |
| CTTCAACATGTTGGAAAGAA+AGG | 0.459586 | 4_4:+13419502 | Msa0670720:CDS |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4_4:-13419614 | None:intergenic |
| TTCTCGCGACCAAGACAAAC+GGG | 0.470376 | 4_4:-13419954 | None:intergenic |
| TGTAATCGATGCAATTATAA+GGG | 0.476930 | 4_4:+13419347 | Msa0670720:CDS |
| TTGCGATGCACAACAACATT+GGG | 0.477561 | 4_4:+13420819 | Msa0670720:CDS |
| TTGAGACCTTCTGATAATGA+TGG | 0.479264 | 4_4:-13419272 | None:intergenic |
| TACTCACTCAATACCGGAGC+AGG | 0.481604 | 4_4:+13420753 | Msa0670720:CDS |
| TTCTGATAATGATGGTTTGT+CGG | 0.493949 | 4_4:-13419264 | None:intergenic |
| AAGTCGTAAACATCCATGTT+TGG | 0.494866 | 4_4:-13419560 | None:intergenic |
| ATATGAAATTGTTGGAAGCT+CGG | 0.504899 | 4_4:+13419862 | Msa0670720:CDS |
| TGTTTCAAGAAAATAGAAAA+CGG | 0.506234 | 4_4:+13419885 | Msa0670720:CDS |
| AGGAAAGAATCATACTATCA+AGG | 0.510494 | 4_4:-13420015 | None:intergenic |
| ATTATGAAGTCTATTGAATG+TGG | 0.513075 | 4_4:+13419746 | Msa0670720:CDS |
| AAGCTAAATTGTGTTTCAAG+AGG | 0.513615 | 4_4:-13420724 | None:intergenic |
| AGAAAACTTTGGTCCTGCTC+CGG | 0.527471 | 4_4:-13420766 | None:intergenic |
| TTCTGATGCCTTCAACATGT+TGG | 0.527887 | 4_4:+13419493 | Msa0670720:CDS |
| TTATGAAGTCTATTGAATGT+GGG | 0.532174 | 4_4:+13419747 | Msa0670720:CDS |
| AAAACGAACCTGTAAATGGC+TGG | 0.538065 | 4_4:-13420176 | None:intergenic |
| TTCAGTTACCAAATGTAGCA+TGG | 0.538628 | 4_4:+13419469 | Msa0670720:intron |
| AGCTCAACCGATGAGACAAA+AGG | 0.540383 | 4_4:+13420676 | Msa0670720:CDS |
| ATTCTCGCGACCAAGACAAA+CGG | 0.543227 | 4_4:-13419955 | None:intergenic |
| CTACGTGCAGTCAATCAACT+AGG | 0.547867 | 4_4:+13419992 | Msa0670720:CDS |
| ATTGCGATGCACAACAACAT+TGG | 0.547991 | 4_4:+13420818 | Msa0670720:CDS |
| ATAAATCATCATCAACATAT+GGG | 0.548211 | 4_4:-13420900 | None:intergenic |
| ATCAACATATGGGAACAAGT+TGG | 0.552596 | 4_4:-13420890 | None:intergenic |
| AGAAGCTACTCACTCAATAC+CGG | 0.567403 | 4_4:+13420747 | Msa0670720:CDS |
| ATCATTATCAGAAGGTCTCA+AGG | 0.582734 | 4_4:+13419274 | Msa0670720:CDS |
| CGATGCACAACAACATTGGG+TGG | 0.592869 | 4_4:+13420822 | Msa0670720:CDS |
| AGAACTTTCTGCAGAATCAA+CGG | 0.593830 | 4_4:-13419723 | None:intergenic |
| TCTTATAACATGTTGCCACA+TGG | 0.594344 | 4_4:-13419816 | None:intergenic |
| TATGAAGTCTATTGAATGTG+GGG | 0.598969 | 4_4:+13419748 | Msa0670720:CDS |
| TGATGCTCATATGCCAAACA+TGG | 0.604750 | 4_4:+13419547 | Msa0670720:CDS |
| CACTCTCCTTAATTTCGTCG+AGG | 0.625060 | 4_4:+13419319 | Msa0670720:CDS |
| GACAAACCATCATTATCAGA+AGG | 0.636966 | 4_4:+13419266 | Msa0670720:CDS |
| ATGATTTATCATCACTTGTG+TGG | 0.696325 | 4_4:+13420914 | Msa0670720:CDS |
| TTTCAAGAAAATAGAAAACG+GGG | 0.722642 | 4_4:+13419887 | Msa0670720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAATATGAAATTGT+TGG | + | chr4_4:13419854-13419873 | Msa0670720:CDS | 15.0% |
| !! | AACAAAAAATATGAAATTGT+TGG | + | chr4_4:13419854-13419873 | Msa0670720:CDS | 15.0% |
| !! | AAAGATGAAAACTTTGAATA+AGG | - | chr4_4:13419390-13419409 | None:intergenic | 20.0% |
| !!! | TTCAAAGTTTTCATCTTTTT+TGG | + | chr4_4:13419392-13419411 | Msa0670720:intron | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | - | chr4_4:13419617-13419636 | None:intergenic | 20.0% |
| !!! | TTATTTCTTTTTTGTAGTGA+TGG | + | chr4_4:13419700-13419719 | Msa0670720:intron | 20.0% |
| !! | TGTTTCAAGAAAATAGAAAA+CGG | + | chr4_4:13419885-13419904 | Msa0670720:CDS | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | - | chr4_4:13420038-13420057 | None:intergenic | 20.0% |
| !! | TGAAAAATAAGAGAAAAACA+TGG | - | chr4_4:13420092-13420111 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTATTTTTC+AGG | + | chr4_4:13420091-13420110 | Msa0670720:intron | 20.0% |
| !!! | TGTTTTTCTCTTATTTTTCA+GGG | + | chr4_4:13420092-13420111 | Msa0670720:intron | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | - | chr4_4:13420124-13420143 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | + | chr4_4:13420123-13420142 | Msa0670720:CDS | 20.0% |
| !!! | AACATGTTCTTTTTTCATAT+CGG | - | chr4_4:13420155-13420174 | None:intergenic | 20.0% |
| !! | TGATTGTAAACTGAAATTTA+TGG | + | chr4_4:13420587-13420606 | Msa0670720:intron | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | - | chr4_4:13420903-13420922 | None:intergenic | 20.0% |
| !! | AAAGATGAAAACTTTGAATA+AGG | - | chr4_4:13419390-13419409 | None:intergenic | 20.0% |
| !!! | TTCAAAGTTTTCATCTTTTT+TGG | + | chr4_4:13419392-13419411 | Msa0670720:intron | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | - | chr4_4:13419617-13419636 | None:intergenic | 20.0% |
| !!! | TTATTTCTTTTTTGTAGTGA+TGG | + | chr4_4:13419700-13419719 | Msa0670720:intron | 20.0% |
| !! | TGTTTCAAGAAAATAGAAAA+CGG | + | chr4_4:13419885-13419904 | Msa0670720:CDS | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | - | chr4_4:13420038-13420057 | None:intergenic | 20.0% |
| !! | TGAAAAATAAGAGAAAAACA+TGG | - | chr4_4:13420092-13420111 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTATTTTTC+AGG | + | chr4_4:13420091-13420110 | Msa0670720:intron | 20.0% |
| !!! | TGTTTTTCTCTTATTTTTCA+GGG | + | chr4_4:13420092-13420111 | Msa0670720:intron | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | - | chr4_4:13420124-13420143 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | + | chr4_4:13420123-13420142 | Msa0670720:CDS | 20.0% |
| !!! | AACATGTTCTTTTTTCATAT+CGG | - | chr4_4:13420155-13420174 | None:intergenic | 20.0% |
| !! | TGATTGTAAACTGAAATTTA+TGG | + | chr4_4:13420587-13420606 | Msa0670720:intron | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | - | chr4_4:13420903-13420922 | None:intergenic | 20.0% |
| ! | TGTAATCGATGCAATTATAA+GGG | + | chr4_4:13419347-13419366 | Msa0670720:CDS | 25.0% |
| ! | ATTATGAAGTCTATTGAATG+TGG | + | chr4_4:13419746-13419765 | Msa0670720:CDS | 25.0% |
| ! | TTATGAAGTCTATTGAATGT+GGG | + | chr4_4:13419747-13419766 | Msa0670720:CDS | 25.0% |
| ! | GTTTCAAGAAAATAGAAAAC+GGG | + | chr4_4:13419886-13419905 | Msa0670720:CDS | 25.0% |
| ! | TTTCAAGAAAATAGAAAACG+GGG | + | chr4_4:13419887-13419906 | Msa0670720:CDS | 25.0% |
| !!! | GTTTTTCTCTTATTTTTCAG+GGG | + | chr4_4:13420093-13420112 | Msa0670720:intron | 25.0% |
| !!! | ACATGTTCTTTTTTCATATC+GGG | - | chr4_4:13420154-13420173 | None:intergenic | 25.0% |
| ! | ATGCATAAGCTATTAAATTC+AGG | - | chr4_4:13420408-13420427 | None:intergenic | 25.0% |
| ! | TAACAGCTAGAAAAAGAATT+TGG | - | chr4_4:13420442-13420461 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | - | chr4_4:13420551-13420570 | None:intergenic | 25.0% |
| ! | CAGAATTATGAAGAAAACTT+TGG | - | chr4_4:13420780-13420799 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | - | chr4_4:13420904-13420923 | None:intergenic | 25.0% |
| ! | TGTAATCGATGCAATTATAA+GGG | + | chr4_4:13419347-13419366 | Msa0670720:CDS | 25.0% |
| ! | ATTATGAAGTCTATTGAATG+TGG | + | chr4_4:13419746-13419765 | Msa0670720:CDS | 25.0% |
| ! | TTATGAAGTCTATTGAATGT+GGG | + | chr4_4:13419747-13419766 | Msa0670720:CDS | 25.0% |
| ! | GTTTCAAGAAAATAGAAAAC+GGG | + | chr4_4:13419886-13419905 | Msa0670720:CDS | 25.0% |
| ! | TTTCAAGAAAATAGAAAACG+GGG | + | chr4_4:13419887-13419906 | Msa0670720:CDS | 25.0% |
| !!! | GTTTTTCTCTTATTTTTCAG+GGG | + | chr4_4:13420093-13420112 | Msa0670720:intron | 25.0% |
| !!! | ACATGTTCTTTTTTCATATC+GGG | - | chr4_4:13420154-13420173 | None:intergenic | 25.0% |
| ! | ATGCATAAGCTATTAAATTC+AGG | - | chr4_4:13420408-13420427 | None:intergenic | 25.0% |
| ! | TAACAGCTAGAAAAAGAATT+TGG | - | chr4_4:13420442-13420461 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | - | chr4_4:13420551-13420570 | None:intergenic | 25.0% |
| ! | CAGAATTATGAAGAAAACTT+TGG | - | chr4_4:13420780-13420799 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | - | chr4_4:13420904-13420923 | None:intergenic | 25.0% |
| ! | TTCTGATAATGATGGTTTGT+CGG | - | chr4_4:13419267-13419286 | None:intergenic | 30.0% |
| GTGTAATCGATGCAATTATA+AGG | + | chr4_4:13419346-13419365 | Msa0670720:CDS | 30.0% | |
| TATGAAGTCTATTGAATGTG+GGG | + | chr4_4:13419748-13419767 | Msa0670720:CDS | 30.0% | |
| !! | TTGAACTGTTTTTCAACCAA+AGG | - | chr4_4:13419794-13419813 | None:intergenic | 30.0% |
| TGGCAACATGTTATAAGAAA+AGG | + | chr4_4:13419821-13419840 | Msa0670720:CDS | 30.0% | |
| ATATGAAATTGTTGGAAGCT+CGG | + | chr4_4:13419862-13419881 | Msa0670720:CDS | 30.0% | |
| AAAAGAAACACTTGCAAAGA+AGG | + | chr4_4:13419931-13419950 | Msa0670720:CDS | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | - | chr4_4:13420018-13420037 | None:intergenic | 30.0% | |
| TACACAATTACAACAGACTT+AGG | - | chr4_4:13420280-13420299 | None:intergenic | 30.0% | |
| TTGTATAACATGCAAGACTA+TGG | - | chr4_4:13420323-13420342 | None:intergenic | 30.0% | |
| AGAGGATATATAGAAGCTAA+CGG | - | chr4_4:13420533-13420552 | None:intergenic | 30.0% | |
| AAGCTAAATTGTGTTTCAAG+AGG | - | chr4_4:13420727-13420746 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | - | chr4_4:13420860-13420879 | None:intergenic | 30.0% |
| ATGATTTATCATCACTTGTG+TGG | + | chr4_4:13420914-13420933 | Msa0670720:CDS | 30.0% | |
| ! | TTCTGATAATGATGGTTTGT+CGG | - | chr4_4:13419267-13419286 | None:intergenic | 30.0% |
| GTGTAATCGATGCAATTATA+AGG | + | chr4_4:13419346-13419365 | Msa0670720:CDS | 30.0% | |
| TATGAAGTCTATTGAATGTG+GGG | + | chr4_4:13419748-13419767 | Msa0670720:CDS | 30.0% | |
| !! | TTGAACTGTTTTTCAACCAA+AGG | - | chr4_4:13419794-13419813 | None:intergenic | 30.0% |
| TGGCAACATGTTATAAGAAA+AGG | + | chr4_4:13419821-13419840 | Msa0670720:CDS | 30.0% | |
| ATATGAAATTGTTGGAAGCT+CGG | + | chr4_4:13419862-13419881 | Msa0670720:CDS | 30.0% | |
| AAAAGAAACACTTGCAAAGA+AGG | + | chr4_4:13419931-13419950 | Msa0670720:CDS | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | - | chr4_4:13420018-13420037 | None:intergenic | 30.0% | |
| TACACAATTACAACAGACTT+AGG | - | chr4_4:13420280-13420299 | None:intergenic | 30.0% | |
| TTGTATAACATGCAAGACTA+TGG | - | chr4_4:13420323-13420342 | None:intergenic | 30.0% | |
| AGAGGATATATAGAAGCTAA+CGG | - | chr4_4:13420533-13420552 | None:intergenic | 30.0% | |
| AAGCTAAATTGTGTTTCAAG+AGG | - | chr4_4:13420727-13420746 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | - | chr4_4:13420860-13420879 | None:intergenic | 30.0% |
| ATGATTTATCATCACTTGTG+TGG | + | chr4_4:13420914-13420933 | Msa0670720:CDS | 30.0% | |
| GACAAACCATCATTATCAGA+AGG | + | chr4_4:13419266-13419285 | Msa0670720:CDS | 35.0% | |
| ! | TTGAGACCTTCTGATAATGA+TGG | - | chr4_4:13419275-13419294 | None:intergenic | 35.0% |
| ATCATTATCAGAAGGTCTCA+AGG | + | chr4_4:13419274-13419293 | Msa0670720:CDS | 35.0% | |
| TTCAGTTACCAAATGTAGCA+TGG | + | chr4_4:13419469-13419488 | Msa0670720:intron | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | - | chr4_4:13419504-13419523 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | + | chr4_4:13419502-13419521 | Msa0670720:CDS | 35.0% | |
| AAGTCGTAAACATCCATGTT+TGG | - | chr4_4:13419563-13419582 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | - | chr4_4:13419589-13419608 | None:intergenic | 35.0% |
| !!! | GACAGGAATTTTGAGTTGTA+GGG | - | chr4_4:13419600-13419619 | None:intergenic | 35.0% |
| !!! | TGACAGGAATTTTGAGTTGT+AGG | - | chr4_4:13419601-13419620 | None:intergenic | 35.0% |
| AGAACTTTCTGCAGAATCAA+CGG | - | chr4_4:13419726-13419745 | None:intergenic | 35.0% | |
| AAAAACAGTTCAAGACCATG+TGG | + | chr4_4:13419801-13419820 | Msa0670720:CDS | 35.0% | |
| TCTTATAACATGTTGCCACA+TGG | - | chr4_4:13419819-13419838 | None:intergenic | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | - | chr4_4:13419930-13419949 | None:intergenic | 35.0% |
| TGCAAAAACGAACCTGTAAA+TGG | - | chr4_4:13420183-13420202 | None:intergenic | 35.0% | |
| AAAAGATCACTGACAAACCT+AGG | - | chr4_4:13420256-13420275 | None:intergenic | 35.0% | |
| ! | CATCTTACCTTTTGTCTCAT+CGG | - | chr4_4:13420686-13420705 | None:intergenic | 35.0% |
| TCAACATATGGGAACAAGTT+GGG | - | chr4_4:13420892-13420911 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | - | chr4_4:13420893-13420912 | None:intergenic | 35.0% | |
| GACAAACCATCATTATCAGA+AGG | + | chr4_4:13419266-13419285 | Msa0670720:CDS | 35.0% | |
| ! | TTGAGACCTTCTGATAATGA+TGG | - | chr4_4:13419275-13419294 | None:intergenic | 35.0% |
| ATCATTATCAGAAGGTCTCA+AGG | + | chr4_4:13419274-13419293 | Msa0670720:CDS | 35.0% | |
| TTCAGTTACCAAATGTAGCA+TGG | + | chr4_4:13419469-13419488 | Msa0670720:intron | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | - | chr4_4:13419504-13419523 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | + | chr4_4:13419502-13419521 | Msa0670720:CDS | 35.0% | |
| AAGTCGTAAACATCCATGTT+TGG | - | chr4_4:13419563-13419582 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | - | chr4_4:13419589-13419608 | None:intergenic | 35.0% |
| !!! | GACAGGAATTTTGAGTTGTA+GGG | - | chr4_4:13419600-13419619 | None:intergenic | 35.0% |
| !!! | TGACAGGAATTTTGAGTTGT+AGG | - | chr4_4:13419601-13419620 | None:intergenic | 35.0% |
| AGAACTTTCTGCAGAATCAA+CGG | - | chr4_4:13419726-13419745 | None:intergenic | 35.0% | |
| AAAAACAGTTCAAGACCATG+TGG | + | chr4_4:13419801-13419820 | Msa0670720:CDS | 35.0% | |
| TCTTATAACATGTTGCCACA+TGG | - | chr4_4:13419819-13419838 | None:intergenic | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | - | chr4_4:13419930-13419949 | None:intergenic | 35.0% |
| TGCAAAAACGAACCTGTAAA+TGG | - | chr4_4:13420183-13420202 | None:intergenic | 35.0% | |
| AAAAGATCACTGACAAACCT+AGG | - | chr4_4:13420256-13420275 | None:intergenic | 35.0% | |
| ! | CATCTTACCTTTTGTCTCAT+CGG | - | chr4_4:13420686-13420705 | None:intergenic | 35.0% |
| TCAACATATGGGAACAAGTT+GGG | - | chr4_4:13420892-13420911 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | - | chr4_4:13420893-13420912 | None:intergenic | 35.0% | |
| ! | TGATGGTTTGTCGGTGAAAA+GGG | - | chr4_4:13419258-13419277 | None:intergenic | 40.0% |
| ! | ATGATGGTTTGTCGGTGAAA+AGG | - | chr4_4:13419259-13419278 | None:intergenic | 40.0% |
| ACATCTCCTCGACGAAATTA+AGG | - | chr4_4:13419328-13419347 | None:intergenic | 40.0% | |
| ATCAGAAGCCATGCTACATT+TGG | - | chr4_4:13419480-13419499 | None:intergenic | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | + | chr4_4:13419493-13419512 | Msa0670720:CDS | 40.0% | |
| TGATGCTCATATGCCAAACA+TGG | + | chr4_4:13419547-13419566 | Msa0670720:CDS | 40.0% | |
| CGAATATTGGACTAAGCCTT+TGG | + | chr4_4:13419775-13419794 | Msa0670720:CDS | 40.0% | |
| AAAACGAACCTGTAAATGGC+TGG | - | chr4_4:13420179-13420198 | None:intergenic | 40.0% | |
| AAACCTAGGCAACTAGACTT+AGG | - | chr4_4:13420242-13420261 | None:intergenic | 40.0% | |
| GAGTAGCTTCAGCTACTTAT+AGG | + | chr4_4:13420363-13420382 | Msa0670720:intron | 40.0% | |
| CAGGTTCGTTTCATTTACAC+CGG | - | chr4_4:13420389-13420408 | None:intergenic | 40.0% | |
| AGAAGCTACTCACTCAATAC+CGG | + | chr4_4:13420747-13420766 | Msa0670720:CDS | 40.0% | |
| ATTGCGATGCACAACAACAT+TGG | + | chr4_4:13420818-13420837 | Msa0670720:CDS | 40.0% | |
| TTGCGATGCACAACAACATT+GGG | + | chr4_4:13420819-13420838 | Msa0670720:CDS | 40.0% | |
| CAACAACATTGGGTGGAAAT+TGG | + | chr4_4:13420829-13420848 | Msa0670720:CDS | 40.0% | |
| ! | TGATGGTTTGTCGGTGAAAA+GGG | - | chr4_4:13419258-13419277 | None:intergenic | 40.0% |
| ! | ATGATGGTTTGTCGGTGAAA+AGG | - | chr4_4:13419259-13419278 | None:intergenic | 40.0% |
| ACATCTCCTCGACGAAATTA+AGG | - | chr4_4:13419328-13419347 | None:intergenic | 40.0% | |
| ATCAGAAGCCATGCTACATT+TGG | - | chr4_4:13419480-13419499 | None:intergenic | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | + | chr4_4:13419493-13419512 | Msa0670720:CDS | 40.0% | |
| TGATGCTCATATGCCAAACA+TGG | + | chr4_4:13419547-13419566 | Msa0670720:CDS | 40.0% | |
| CGAATATTGGACTAAGCCTT+TGG | + | chr4_4:13419775-13419794 | Msa0670720:CDS | 40.0% | |
| AAAACGAACCTGTAAATGGC+TGG | - | chr4_4:13420179-13420198 | None:intergenic | 40.0% | |
| AAACCTAGGCAACTAGACTT+AGG | - | chr4_4:13420242-13420261 | None:intergenic | 40.0% | |
| GAGTAGCTTCAGCTACTTAT+AGG | + | chr4_4:13420363-13420382 | Msa0670720:intron | 40.0% | |
| CAGGTTCGTTTCATTTACAC+CGG | - | chr4_4:13420389-13420408 | None:intergenic | 40.0% | |
| AGAAGCTACTCACTCAATAC+CGG | + | chr4_4:13420747-13420766 | Msa0670720:CDS | 40.0% | |
| ATTGCGATGCACAACAACAT+TGG | + | chr4_4:13420818-13420837 | Msa0670720:CDS | 40.0% | |
| TTGCGATGCACAACAACATT+GGG | + | chr4_4:13420819-13420838 | Msa0670720:CDS | 40.0% | |
| CAACAACATTGGGTGGAAAT+TGG | + | chr4_4:13420829-13420848 | Msa0670720:CDS | 40.0% | |
| CACTCTCCTTAATTTCGTCG+AGG | + | chr4_4:13419319-13419338 | Msa0670720:CDS | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | + | chr4_4:13419762-13419781 | Msa0670720:CDS | 45.0% | |
| ATTCTCGCGACCAAGACAAA+CGG | - | chr4_4:13419958-13419977 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | + | chr4_4:13419992-13420011 | Msa0670720:CDS | 45.0% | |
| ACATGTTGCCAGCCATTTAC+AGG | + | chr4_4:13420168-13420187 | Msa0670720:CDS | 45.0% | |
| GTACCTAAGTCTAGTTGCCT+AGG | + | chr4_4:13420236-13420255 | Msa0670720:intron | 45.0% | |
| AGCTTCAGCTACTTATAGGC+CGG | + | chr4_4:13420367-13420386 | Msa0670720:intron | 45.0% | |
| AGCTCAACCGATGAGACAAA+AGG | + | chr4_4:13420676-13420695 | Msa0670720:CDS | 45.0% | |
| AGAAAACTTTGGTCCTGCTC+CGG | - | chr4_4:13420769-13420788 | None:intergenic | 45.0% | |
| CACTCTCCTTAATTTCGTCG+AGG | + | chr4_4:13419319-13419338 | Msa0670720:CDS | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | + | chr4_4:13419762-13419781 | Msa0670720:CDS | 45.0% | |
| ATTCTCGCGACCAAGACAAA+CGG | - | chr4_4:13419958-13419977 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | + | chr4_4:13419992-13420011 | Msa0670720:CDS | 45.0% | |
| ACATGTTGCCAGCCATTTAC+AGG | + | chr4_4:13420168-13420187 | Msa0670720:CDS | 45.0% | |
| GTACCTAAGTCTAGTTGCCT+AGG | + | chr4_4:13420236-13420255 | Msa0670720:intron | 45.0% | |
| AGCTTCAGCTACTTATAGGC+CGG | + | chr4_4:13420367-13420386 | Msa0670720:intron | 45.0% | |
| AGCTCAACCGATGAGACAAA+AGG | + | chr4_4:13420676-13420695 | Msa0670720:CDS | 45.0% | |
| AGAAAACTTTGGTCCTGCTC+CGG | - | chr4_4:13420769-13420788 | None:intergenic | 45.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | + | chr4_4:13419945-13419964 | Msa0670720:CDS | 50.0% | |
| TTCTCGCGACCAAGACAAAC+GGG | - | chr4_4:13419957-13419976 | None:intergenic | 50.0% | |
| TACTCACTCAATACCGGAGC+AGG | + | chr4_4:13420753-13420772 | Msa0670720:CDS | 50.0% | |
| CGATGCACAACAACATTGGG+TGG | + | chr4_4:13420822-13420841 | Msa0670720:CDS | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | + | chr4_4:13419945-13419964 | Msa0670720:CDS | 50.0% | |
| TTCTCGCGACCAAGACAAAC+GGG | - | chr4_4:13419957-13419976 | None:intergenic | 50.0% | |
| TACTCACTCAATACCGGAGC+AGG | + | chr4_4:13420753-13420772 | Msa0670720:CDS | 50.0% | |
| CGATGCACAACAACATTGGG+TGG | + | chr4_4:13420822-13420841 | Msa0670720:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 13419251 | 13420939 | 13419251 | ID=Msa0670720;Name=Msa0670720 |
| chr4_4 | mRNA | 13419251 | 13420939 | 13419251 | ID=Msa0670720-mRNA-1;Parent=Msa0670720;Name=Msa0670720-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|5|0|311 |
| chr4_4 | exon | 13419251 | 13419368 | 13419251 | ID=Msa0670720-mRNA-1:exon:4078;Parent=Msa0670720-mRNA-1 |
| chr4_4 | exon | 13419474 | 13419623 | 13419474 | ID=Msa0670720-mRNA-1:exon:4079;Parent=Msa0670720-mRNA-1 |
| chr4_4 | exon | 13419717 | 13420022 | 13419717 | ID=Msa0670720-mRNA-1:exon:4080;Parent=Msa0670720-mRNA-1 |
| chr4_4 | exon | 13420113 | 13420189 | 13420113 | ID=Msa0670720-mRNA-1:exon:4081;Parent=Msa0670720-mRNA-1 |
| chr4_4 | exon | 13420655 | 13420939 | 13420655 | ID=Msa0670720-mRNA-1:exon:4082;Parent=Msa0670720-mRNA-1 |
| chr4_4 | CDS | 13419251 | 13419368 | 13419251 | ID=Msa0670720-mRNA-1:cds;Parent=Msa0670720-mRNA-1 |
| chr4_4 | CDS | 13419474 | 13419623 | 13419474 | ID=Msa0670720-mRNA-1:cds;Parent=Msa0670720-mRNA-1 |
| chr4_4 | CDS | 13419717 | 13420022 | 13419717 | ID=Msa0670720-mRNA-1:cds;Parent=Msa0670720-mRNA-1 |
| chr4_4 | CDS | 13420113 | 13420189 | 13420113 | ID=Msa0670720-mRNA-1:cds;Parent=Msa0670720-mRNA-1 |
| chr4_4 | CDS | 13420655 | 13420939 | 13420655 | ID=Msa0670720-mRNA-1:cds;Parent=Msa0670720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
