Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670770 | XP_013455007.2 | 86.581 | 313 | 40 | 2 | 1 | 312 | 1 | 312 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670770 | sp|Q8H7S7|ORR21_ORYSJ | 39.419 | 241 | 113 | 4 | 13 | 221 | 15 | 254 | 1.61e-50 | 180 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670770 | A0A396I0H3 | 86.581 | 313 | 40 | 2 | 1 | 312 | 1 | 312 | 0.0 | 556 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0670770 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670770 | MtrunA17_Chr4g0009851 | 86.581 | 313 | 40 | 2 | 1 | 312 | 1 | 312 | 0.0 | 556 |
| Msa0670770 | MtrunA17_Chr4g0009981 | 84.942 | 259 | 39 | 0 | 54 | 312 | 1 | 259 | 6.82e-168 | 466 |
| Msa0670770 | MtrunA17_Chr4g0009901 | 70.124 | 241 | 71 | 1 | 1 | 241 | 1 | 240 | 3.80e-117 | 338 |
| Msa0670770 | MtrunA17_Chr4g0011071 | 78.102 | 137 | 30 | 0 | 56 | 192 | 35 | 171 | 1.93e-75 | 229 |
| Msa0670770 | MtrunA17_Chr6g0471041 | 45.574 | 305 | 144 | 9 | 1 | 295 | 1 | 293 | 1.64e-69 | 222 |
| Msa0670770 | MtrunA17_Chr1g0161431 | 36.011 | 361 | 165 | 9 | 13 | 308 | 14 | 373 | 3.05e-62 | 208 |
| Msa0670770 | MtrunA17_Chr4g0009991 | 76.923 | 117 | 26 | 1 | 102 | 218 | 1 | 116 | 1.43e-57 | 181 |
| Msa0670770 | MtrunA17_Chr3g0123131 | 39.241 | 237 | 115 | 4 | 13 | 221 | 16 | 251 | 1.33e-53 | 184 |
| Msa0670770 | MtrunA17_Chr4g0067981 | 39.149 | 235 | 116 | 3 | 13 | 221 | 34 | 267 | 7.01e-52 | 181 |
| Msa0670770 | MtrunA17_Chr8g0376881 | 38.723 | 235 | 117 | 4 | 13 | 221 | 28 | 261 | 8.13e-52 | 178 |
| Msa0670770 | MtrunA17_Chr2g0294911 | 39.914 | 233 | 115 | 3 | 13 | 221 | 32 | 263 | 2.47e-51 | 178 |
| Msa0670770 | MtrunA17_Chr7g0275401 | 36.735 | 245 | 125 | 4 | 13 | 228 | 8 | 251 | 1.44e-47 | 161 |
| Msa0670770 | MtrunA17_Chr1g0149841 | 38.397 | 237 | 117 | 4 | 13 | 221 | 8 | 243 | 9.42e-46 | 161 |
| Msa0670770 | MtrunA17_Chr8g0391911 | 38.961 | 231 | 114 | 4 | 14 | 218 | 13 | 242 | 1.27e-44 | 152 |
| Msa0670770 | MtrunA17_Chr8g0383961 | 41.573 | 267 | 117 | 9 | 1 | 255 | 1 | 240 | 2.44e-44 | 152 |
| Msa0670770 | MtrunA17_Chr3g0137101 | 37.344 | 241 | 118 | 4 | 13 | 221 | 11 | 250 | 5.21e-44 | 159 |
| Msa0670770 | MtrunA17_Chr7g0275891 | 33.221 | 298 | 153 | 8 | 13 | 267 | 8 | 302 | 6.85e-41 | 145 |
| Msa0670770 | MtrunA17_Chr5g0423031 | 68.889 | 90 | 27 | 1 | 1 | 90 | 1 | 89 | 2.60e-39 | 136 |
| Msa0670770 | MtrunA17_Chr1g0149851 | 32.343 | 303 | 160 | 7 | 13 | 271 | 8 | 309 | 4.50e-39 | 144 |
| Msa0670770 | MtrunA17_Chr4g0010001 | 68.889 | 90 | 27 | 1 | 1 | 90 | 1 | 89 | 4.79e-39 | 132 |
| Msa0670770 | MtrunA17_Chr4g0074401 | 31.855 | 248 | 140 | 5 | 13 | 232 | 20 | 266 | 7.38e-39 | 144 |
| Msa0670770 | MtrunA17_Chr4g0074411 | 32.653 | 245 | 139 | 5 | 13 | 232 | 21 | 264 | 1.74e-38 | 143 |
| Msa0670770 | MtrunA17_Chr2g0304841 | 32.812 | 256 | 128 | 5 | 13 | 228 | 21 | 272 | 2.37e-38 | 143 |
| Msa0670770 | MtrunA17_Chr3g0134461 | 37.981 | 208 | 101 | 5 | 13 | 218 | 11 | 192 | 1.16e-36 | 130 |
| Msa0670770 | MtrunA17_Chr4g0074421 | 35.912 | 181 | 94 | 3 | 60 | 218 | 2 | 182 | 6.28e-36 | 128 |
| Msa0670770 | MtrunA17_Chr3g0134481 | 33.333 | 222 | 109 | 4 | 4 | 224 | 4 | 187 | 2.37e-34 | 124 |
| Msa0670770 | MtrunA17_Chr6g0456631 | 41.611 | 149 | 84 | 2 | 14 | 160 | 13 | 160 | 1.25e-33 | 121 |
| Msa0670770 | MtrunA17_Chr1g0149831 | 37.778 | 180 | 82 | 3 | 69 | 221 | 1 | 177 | 2.97e-30 | 114 |
| Msa0670770 | MtrunA17_Chr6g0473731 | 31.319 | 182 | 107 | 3 | 90 | 258 | 10 | 186 | 1.67e-22 | 97.1 |
| Msa0670770 | MtrunA17_Chr7g0223971 | 28.169 | 213 | 97 | 4 | 92 | 255 | 1 | 206 | 1.34e-17 | 83.2 |
| Msa0670770 | MtrunA17_Chr5g0417521 | 47.826 | 69 | 31 | 2 | 169 | 232 | 15 | 83 | 1.09e-13 | 70.9 |
| Msa0670770 | MtrunA17_Chr2g0324891 | 37.363 | 91 | 55 | 1 | 137 | 225 | 127 | 217 | 1.14e-13 | 71.2 |
| Msa0670770 | MtrunA17_Chr7g0261911 | 43.011 | 93 | 48 | 3 | 160 | 250 | 253 | 342 | 1.94e-13 | 70.5 |
| Msa0670770 | MtrunA17_Chr7g0254981 | 41.758 | 91 | 50 | 2 | 167 | 256 | 48 | 136 | 2.39e-13 | 68.9 |
| Msa0670770 | MtrunA17_Chr6g0461641 | 55.556 | 54 | 23 | 1 | 169 | 221 | 42 | 95 | 5.83e-13 | 68.9 |
| Msa0670770 | MtrunA17_Chr4g0040481 | 46.552 | 58 | 31 | 0 | 168 | 225 | 157 | 214 | 6.01e-13 | 68.9 |
| Msa0670770 | MtrunA17_Chr5g0400241 | 34.940 | 83 | 54 | 0 | 168 | 250 | 310 | 392 | 1.34e-12 | 68.2 |
| Msa0670770 | MtrunA17_Chr4g0042451 | 51.852 | 54 | 25 | 1 | 169 | 221 | 17 | 70 | 1.67e-12 | 67.4 |
| Msa0670770 | MtrunA17_Chr2g0321461 | 53.704 | 54 | 24 | 1 | 169 | 221 | 45 | 98 | 2.35e-12 | 67.0 |
| Msa0670770 | MtrunA17_Chr2g0291021 | 57.407 | 54 | 22 | 1 | 169 | 221 | 49 | 102 | 6.63e-12 | 65.5 |
| Msa0670770 | MtrunA17_Chr4g0054981 | 50.000 | 54 | 27 | 0 | 168 | 221 | 309 | 362 | 1.01e-11 | 65.5 |
| Msa0670770 | MtrunA17_Chr7g0274471 | 47.222 | 72 | 36 | 2 | 169 | 238 | 218 | 289 | 1.14e-11 | 65.1 |
| Msa0670770 | MtrunA17_Chr7g0255711 | 50.000 | 54 | 27 | 0 | 168 | 221 | 90 | 143 | 2.37e-11 | 63.5 |
| Msa0670770 | MtrunA17_Chr7g0242521 | 51.429 | 70 | 25 | 3 | 156 | 221 | 5 | 69 | 2.69e-11 | 62.8 |
| Msa0670770 | MtrunA17_Chr1g0198601 | 46.575 | 73 | 31 | 2 | 150 | 221 | 199 | 264 | 3.10e-11 | 63.5 |
| Msa0670770 | MtrunA17_Chr4g0031961 | 43.478 | 69 | 38 | 1 | 157 | 225 | 120 | 187 | 3.50e-11 | 63.2 |
| Msa0670770 | MtrunA17_Chr1g0190301 | 50.000 | 64 | 30 | 2 | 160 | 221 | 165 | 228 | 3.66e-11 | 63.5 |
| Msa0670770 | MtrunA17_Chr7g0258551 | 49.123 | 57 | 28 | 1 | 166 | 221 | 209 | 265 | 3.89e-11 | 63.5 |
| Msa0670770 | MtrunA17_Chr1g0175091 | 44.118 | 68 | 35 | 2 | 155 | 221 | 246 | 311 | 5.33e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670770 | AT2G01760.1 | 37.500 | 256 | 120 | 6 | 13 | 231 | 10 | 262 | 3.20e-51 | 174 |
| Msa0670770 | AT1G67710.1 | 40.336 | 238 | 112 | 5 | 13 | 221 | 10 | 246 | 1.42e-49 | 172 |
| Msa0670770 | AT2G01760.2 | 34.982 | 283 | 118 | 7 | 13 | 231 | 10 | 290 | 4.66e-49 | 169 |
| Msa0670770 | AT3G16857.1 | 37.255 | 255 | 113 | 7 | 13 | 221 | 36 | 289 | 9.42e-46 | 164 |
| Msa0670770 | AT3G16857.2 | 37.255 | 255 | 113 | 7 | 13 | 221 | 36 | 289 | 1.09e-45 | 164 |
| Msa0670770 | AT4G31920.1 | 34.818 | 247 | 145 | 5 | 13 | 247 | 16 | 258 | 2.70e-43 | 156 |
| Msa0670770 | AT2G25180.1 | 36.752 | 234 | 121 | 6 | 13 | 221 | 16 | 247 | 4.90e-40 | 148 |
| Msa0670770 | AT3G16857.3 | 37.156 | 218 | 91 | 6 | 50 | 221 | 2 | 219 | 3.92e-38 | 143 |
| Msa0670770 | AT2G01760.3 | 36.181 | 199 | 89 | 4 | 69 | 231 | 1 | 197 | 4.80e-37 | 135 |
| Msa0670770 | AT5G58080.1 | 37.021 | 235 | 117 | 7 | 13 | 221 | 17 | 246 | 5.46e-36 | 137 |
| Msa0670770 | AT1G67710.2 | 40.884 | 181 | 79 | 3 | 69 | 221 | 1 | 181 | 4.74e-34 | 129 |
| Msa0670770 | AT5G49240.1 | 29.536 | 237 | 139 | 5 | 9 | 218 | 37 | 272 | 7.07e-27 | 107 |
| Msa0670770 | AT1G49190.1 | 30.992 | 242 | 125 | 8 | 16 | 221 | 36 | 271 | 1.74e-26 | 108 |
| Msa0670770 | AT1G67710.3 | 39.752 | 161 | 69 | 3 | 89 | 221 | 12 | 172 | 4.95e-26 | 107 |
| Msa0670770 | AT3G62670.1 | 29.808 | 208 | 123 | 5 | 42 | 227 | 68 | 274 | 4.16e-25 | 104 |
| Msa0670770 | AT5G07210.2 | 26.718 | 262 | 135 | 8 | 14 | 221 | 16 | 274 | 1.14e-21 | 95.9 |
| Msa0670770 | AT5G07210.1 | 26.394 | 269 | 135 | 8 | 14 | 221 | 16 | 282 | 2.66e-21 | 94.7 |
| Msa0670770 | AT5G29000.1 | 34.161 | 161 | 90 | 5 | 104 | 255 | 123 | 276 | 1.51e-17 | 82.8 |
| Msa0670770 | AT5G29000.3 | 34.161 | 161 | 90 | 5 | 104 | 255 | 123 | 276 | 1.51e-17 | 82.8 |
| Msa0670770 | AT2G27070.1 | 25.000 | 264 | 140 | 9 | 14 | 221 | 16 | 277 | 1.54e-17 | 83.6 |
| Msa0670770 | AT5G29000.2 | 34.161 | 161 | 90 | 5 | 104 | 255 | 166 | 319 | 1.58e-17 | 82.8 |
| Msa0670770 | AT5G29000.4 | 36.429 | 140 | 73 | 5 | 104 | 234 | 166 | 298 | 1.92e-17 | 81.6 |
| Msa0670770 | AT1G49190.2 | 35.200 | 125 | 69 | 4 | 16 | 134 | 36 | 154 | 2.72e-14 | 73.9 |
| Msa0670770 | AT5G44190.1 | 50.000 | 60 | 30 | 0 | 166 | 225 | 144 | 203 | 8.12e-14 | 71.6 |
| Msa0670770 | AT5G44190.2 | 50.000 | 60 | 30 | 0 | 166 | 225 | 144 | 203 | 9.75e-14 | 71.2 |
| Msa0670770 | AT3G04030.1 | 55.556 | 54 | 23 | 1 | 169 | 221 | 45 | 98 | 4.31e-13 | 69.7 |
| Msa0670770 | AT3G04030.3 | 55.556 | 54 | 23 | 1 | 169 | 221 | 45 | 98 | 4.88e-13 | 69.7 |
| Msa0670770 | AT4G28610.1 | 46.067 | 89 | 44 | 3 | 169 | 255 | 225 | 311 | 6.87e-13 | 69.3 |
| Msa0670770 | AT5G18240.2 | 55.556 | 54 | 23 | 1 | 169 | 221 | 45 | 98 | 9.65e-13 | 68.6 |
| Msa0670770 | AT5G18240.3 | 55.556 | 54 | 23 | 1 | 169 | 221 | 45 | 98 | 9.65e-13 | 68.6 |
| Msa0670770 | AT2G01060.1 | 50.769 | 65 | 31 | 1 | 158 | 221 | 4 | 68 | 1.05e-12 | 67.8 |
| Msa0670770 | AT5G18240.5 | 55.556 | 54 | 23 | 1 | 169 | 221 | 45 | 98 | 1.13e-12 | 68.6 |
| Msa0670770 | AT3G04450.1 | 42.500 | 80 | 39 | 2 | 165 | 243 | 234 | 307 | 1.14e-12 | 68.6 |
| Msa0670770 | AT5G18240.1 | 55.556 | 54 | 23 | 1 | 169 | 221 | 45 | 98 | 1.17e-12 | 68.6 |
| Msa0670770 | AT5G18240.4 | 55.556 | 54 | 23 | 1 | 169 | 221 | 45 | 98 | 1.17e-12 | 68.6 |
| Msa0670770 | AT3G04450.3 | 50.000 | 58 | 28 | 1 | 165 | 221 | 234 | 291 | 1.23e-12 | 67.8 |
| Msa0670770 | AT3G04450.4 | 42.500 | 80 | 39 | 2 | 165 | 243 | 194 | 267 | 1.60e-12 | 68.2 |
| Msa0670770 | AT3G04450.2 | 42.500 | 80 | 39 | 2 | 165 | 243 | 194 | 267 | 1.60e-12 | 68.2 |
| Msa0670770 | AT5G59570.2 | 43.056 | 72 | 38 | 1 | 150 | 221 | 125 | 193 | 2.21e-12 | 67.0 |
| Msa0670770 | AT5G59570.1 | 43.056 | 72 | 38 | 1 | 150 | 221 | 125 | 193 | 2.21e-12 | 67.0 |
| Msa0670770 | AT3G04030.2 | 52.830 | 53 | 25 | 0 | 169 | 221 | 45 | 97 | 2.89e-12 | 67.4 |
| Msa0670770 | AT2G20570.1 | 48.276 | 58 | 30 | 0 | 168 | 225 | 152 | 209 | 3.74e-12 | 67.0 |
| Msa0670770 | AT3G46640.2 | 44.156 | 77 | 40 | 2 | 145 | 221 | 123 | 196 | 6.58e-12 | 65.9 |
| Msa0670770 | AT3G46640.1 | 44.156 | 77 | 40 | 2 | 145 | 221 | 123 | 196 | 6.58e-12 | 65.9 |
| Msa0670770 | AT3G46640.3 | 44.156 | 77 | 40 | 2 | 145 | 221 | 123 | 196 | 7.62e-12 | 65.5 |
| Msa0670770 | AT2G40970.1 | 50.000 | 54 | 27 | 0 | 168 | 221 | 104 | 157 | 8.78e-12 | 64.7 |
| Msa0670770 | AT5G05090.1 | 43.529 | 85 | 36 | 3 | 137 | 221 | 61 | 133 | 9.39e-12 | 64.7 |
| Msa0670770 | AT1G69580.1 | 51.852 | 54 | 25 | 1 | 169 | 221 | 34 | 87 | 1.02e-11 | 65.1 |
| Msa0670770 | AT1G69580.2 | 51.852 | 54 | 25 | 1 | 169 | 221 | 34 | 87 | 1.14e-11 | 65.1 |
| Msa0670770 | AT4G18020.8 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.48e-11 | 65.5 |
| Msa0670770 | AT4G18020.11 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.48e-11 | 65.5 |
| Msa0670770 | AT4G18020.4 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.48e-11 | 65.5 |
| Msa0670770 | AT4G18020.5 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.48e-11 | 65.5 |
| Msa0670770 | AT4G18020.10 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.48e-11 | 65.5 |
| Msa0670770 | AT4G18020.7 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.48e-11 | 65.5 |
| Msa0670770 | AT4G18020.3 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.63e-11 | 65.1 |
| Msa0670770 | AT4G18020.2 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.63e-11 | 65.1 |
| Msa0670770 | AT4G18020.1 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.63e-11 | 65.1 |
| Msa0670770 | AT4G18020.6 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.63e-11 | 65.1 |
| Msa0670770 | AT4G18020.9 | 38.158 | 76 | 44 | 1 | 151 | 226 | 281 | 353 | 1.63e-11 | 65.1 |
| Msa0670770 | AT3G10760.1 | 50.000 | 54 | 27 | 0 | 168 | 221 | 104 | 157 | 1.73e-11 | 64.7 |
| Msa0670770 | AT2G20570.2 | 49.091 | 55 | 28 | 0 | 171 | 225 | 171 | 225 | 2.95e-11 | 64.3 |
| Msa0670770 | AT4G04605.1 | 37.624 | 101 | 51 | 3 | 167 | 265 | 12 | 102 | 5.13e-11 | 62.0 |
| Msa0670770 | AT5G06800.3 | 53.704 | 54 | 24 | 1 | 169 | 221 | 192 | 245 | 9.15e-11 | 62.0 |
Find 55 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATGTTGCCAGCCATTTAC+AGG | 0.283862 | 4_4:-13511601 | Msa0670770:intron |
| GTGTAATCGATGCAATTATA+AGG | 0.312923 | 4_4:-13512422 | Msa0670770:CDS |
| ACATCTCCTCGACGAAATTA+AGG | 0.321564 | 4_4:+13512443 | None:intergenic |
| CAACAACATTGGGTGGAAAT+TGG | 0.345706 | 4_4:-13510940 | Msa0670770:CDS |
| TGAGTTGTAGGGTAACATTT+TGG | 0.373812 | 4_4:+13512183 | None:intergenic |
| GATAAATCATCATCAACATA+TGG | 0.380393 | 4_4:+13510868 | None:intergenic |
| AATGTGGGGCTTGCGAATAT+TGG | 0.385194 | 4_4:-13512007 | Msa0670770:CDS |
| CGAATATTGGACTAAGCCTT+TGG | 0.392176 | 4_4:-13511994 | Msa0670770:CDS |
| CAAAGAAGGCCCGTTTGTCT+TGG | 0.418636 | 4_4:-13511824 | Msa0670770:CDS |
| GTTTCAAGAAAATAGAAAAC+GGG | 0.418887 | 4_4:-13511883 | Msa0670770:CDS |
| CTTTCTTTCCAACATGTTGA+AGG | 0.419409 | 4_4:+13512268 | None:intergenic |
| TGGCAACATGTTATAAGAAA+AGG | 0.422808 | 4_4:-13511948 | Msa0670770:CDS |
| TGATGGTTTGTCGGTGAAAA+GGG | 0.427097 | 4_4:+13512513 | None:intergenic |
| AAAAGTGTTGCTCATAATGT+TGG | 0.434928 | 4_4:+13510912 | None:intergenic |
| AAAAGAAACACTTGCAAAGA+AGG | 0.435703 | 4_4:-13511838 | Msa0670770:CDS |
| CAGAATTATGAAGAAAACTT+TGG | 0.439068 | 4_4:+13510992 | None:intergenic |
| TCAACATATGGGAACAAGTT+GGG | 0.453000 | 4_4:+13510880 | None:intergenic |
| ATGATGGTTTGTCGGTGAAA+AGG | 0.455733 | 4_4:+13512512 | None:intergenic |
| CTTCAACATGTTGGAAAGAA+AGG | 0.459586 | 4_4:-13512267 | Msa0670770:CDS |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4_4:+13512155 | None:intergenic |
| TTCTCGCGACCAAGACAAAC+GGG | 0.470376 | 4_4:+13511815 | None:intergenic |
| TGTAATCGATGCAATTATAA+GGG | 0.476930 | 4_4:-13512421 | Msa0670770:CDS |
| TTGCGATGCACAACAACATT+GGG | 0.477561 | 4_4:-13510950 | Msa0670770:CDS |
| TTGAGACCTTCTGATAATGA+TGG | 0.479264 | 4_4:+13512496 | None:intergenic |
| TACTCACTCAATACCGGAGC+AGG | 0.481604 | 4_4:-13511016 | Msa0670770:CDS |
| TTCTGATAATGATGGTTTGT+CGG | 0.493949 | 4_4:+13512504 | None:intergenic |
| AAGTCGTAAACATCCATGTT+TGG | 0.494866 | 4_4:+13512209 | None:intergenic |
| ATATGAAATTGTTGGAAGCT+CGG | 0.504899 | 4_4:-13511907 | Msa0670770:CDS |
| TGTTTCAAGAAAATAGAAAA+CGG | 0.506234 | 4_4:-13511884 | Msa0670770:CDS |
| CATCAGAAGCCATGCTACAT+TGG | 0.507185 | 4_4:+13512291 | None:intergenic |
| AGGAAAGAATCATACTATCA+AGG | 0.510494 | 4_4:+13511754 | None:intergenic |
| ATTATGAAGTCTATTGAATG+TGG | 0.513075 | 4_4:-13512023 | Msa0670770:CDS |
| AAGCTAAATTGTGTTTCAAG+AGG | 0.513615 | 4_4:+13511045 | None:intergenic |
| AGAAAACTTTGGTCCTGCTC+CGG | 0.527471 | 4_4:+13511003 | None:intergenic |
| TTCTGATGCCTTCAACATGT+TGG | 0.527887 | 4_4:-13512276 | Msa0670770:CDS |
| TTATGAAGTCTATTGAATGT+GGG | 0.532174 | 4_4:-13512022 | Msa0670770:CDS |
| AAAACGAACCTGTAAATGGC+TGG | 0.538065 | 4_4:+13511593 | None:intergenic |
| AGCTCAACCGATGAGACAAA+AGG | 0.540383 | 4_4:-13511093 | Msa0670770:CDS |
| ATTCTCGCGACCAAGACAAA+CGG | 0.543227 | 4_4:+13511814 | None:intergenic |
| CTACGTGCAGTCAATCAACT+AGG | 0.547867 | 4_4:-13511777 | Msa0670770:CDS |
| ATTGCGATGCACAACAACAT+TGG | 0.547991 | 4_4:-13510951 | Msa0670770:CDS |
| ATAAATCATCATCAACATAT+GGG | 0.548211 | 4_4:+13510869 | None:intergenic |
| ATCAACATATGGGAACAAGT+TGG | 0.552596 | 4_4:+13510879 | None:intergenic |
| AGAAGCTACTCACTCAATAC+CGG | 0.567403 | 4_4:-13511022 | Msa0670770:CDS |
| ATCATTATCAGAAGGTCTCA+AGG | 0.582734 | 4_4:-13512494 | Msa0670770:CDS |
| CGATGCACAACAACATTGGG+TGG | 0.592869 | 4_4:-13510947 | Msa0670770:CDS |
| TTTCAGTTACCAATGTAGCA+TGG | 0.593024 | 4_4:-13512300 | Msa0670770:intron |
| AGAACTTTCTGCAGAATCAA+CGG | 0.593830 | 4_4:+13512046 | None:intergenic |
| TCTTATAACATGTTGCCACA+TGG | 0.594344 | 4_4:+13511953 | None:intergenic |
| TATGAAGTCTATTGAATGTG+GGG | 0.598969 | 4_4:-13512021 | Msa0670770:CDS |
| TGATGCTCATATGCCAAACA+TGG | 0.604750 | 4_4:-13512222 | Msa0670770:CDS |
| CACTCTCCTTAATTTCGTCG+AGG | 0.625060 | 4_4:-13512449 | Msa0670770:CDS |
| GACAAACCATCATTATCAGA+AGG | 0.636966 | 4_4:-13512502 | Msa0670770:CDS |
| ATGATTTATCATCACTTGTG+TGG | 0.696325 | 4_4:-13510855 | Msa0670770:CDS |
| TTTCAAGAAAATAGAAAACG+GGG | 0.722642 | 4_4:-13511882 | Msa0670770:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAATATGAAATTGT+TGG | - | chr4_4:13511454-13511473 | Msa0670770:intron | 15.0% |
| !! | AACAAAAAATATGAAATTGT+TGG | - | chr4_4:13511454-13511473 | Msa0670770:intron | 15.0% |
| !! | AAAGATGAAAACTTTGAATA+AGG | + | chr4_4:13510991-13511010 | None:intergenic | 20.0% |
| !!! | TTCAAAGTTTTCATCTTTTT+TGG | - | chr4_4:13510993-13511012 | Msa0670770:CDS | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | + | chr4_4:13511217-13511236 | None:intergenic | 20.0% |
| !!! | TTATTTCTTTTTTGTAGTGA+TGG | - | chr4_4:13511300-13511319 | Msa0670770:intron | 20.0% |
| !! | TGTTTCAAGAAAATAGAAAA+CGG | - | chr4_4:13511485-13511504 | Msa0670770:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | + | chr4_4:13511638-13511657 | None:intergenic | 20.0% |
| !! | TGAAAAATAAGAGAAAAACA+TGG | + | chr4_4:13511692-13511711 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTATTTTTC+AGG | - | chr4_4:13511691-13511710 | Msa0670770:intron | 20.0% |
| !!! | TGTTTTTCTCTTATTTTTCA+GGG | - | chr4_4:13511692-13511711 | Msa0670770:intron | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | + | chr4_4:13511724-13511743 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | - | chr4_4:13511723-13511742 | Msa0670770:intron | 20.0% |
| !!! | AACATGTTCTTTTTTCATAT+CGG | + | chr4_4:13511755-13511774 | None:intergenic | 20.0% |
| !! | TGATTGTAAACTGAAATTTA+TGG | - | chr4_4:13512187-13512206 | Msa0670770:CDS | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | + | chr4_4:13512503-13512522 | None:intergenic | 20.0% |
| !! | AAAGATGAAAACTTTGAATA+AGG | + | chr4_4:13510991-13511010 | None:intergenic | 20.0% |
| !!! | TTCAAAGTTTTCATCTTTTT+TGG | - | chr4_4:13510993-13511012 | Msa0670770:CDS | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | + | chr4_4:13511217-13511236 | None:intergenic | 20.0% |
| !!! | TTATTTCTTTTTTGTAGTGA+TGG | - | chr4_4:13511300-13511319 | Msa0670770:intron | 20.0% |
| !! | TGTTTCAAGAAAATAGAAAA+CGG | - | chr4_4:13511485-13511504 | Msa0670770:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | + | chr4_4:13511638-13511657 | None:intergenic | 20.0% |
| !! | TGAAAAATAAGAGAAAAACA+TGG | + | chr4_4:13511692-13511711 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTATTTTTC+AGG | - | chr4_4:13511691-13511710 | Msa0670770:intron | 20.0% |
| !!! | TGTTTTTCTCTTATTTTTCA+GGG | - | chr4_4:13511692-13511711 | Msa0670770:intron | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | + | chr4_4:13511724-13511743 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | - | chr4_4:13511723-13511742 | Msa0670770:intron | 20.0% |
| !!! | AACATGTTCTTTTTTCATAT+CGG | + | chr4_4:13511755-13511774 | None:intergenic | 20.0% |
| !! | TGATTGTAAACTGAAATTTA+TGG | - | chr4_4:13512187-13512206 | Msa0670770:CDS | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | + | chr4_4:13512503-13512522 | None:intergenic | 20.0% |
| ! | TGTAATCGATGCAATTATAA+GGG | - | chr4_4:13510948-13510967 | Msa0670770:CDS | 25.0% |
| ! | ATTATGAAGTCTATTGAATG+TGG | - | chr4_4:13511346-13511365 | Msa0670770:intron | 25.0% |
| ! | TTATGAAGTCTATTGAATGT+GGG | - | chr4_4:13511347-13511366 | Msa0670770:intron | 25.0% |
| ! | GTTTCAAGAAAATAGAAAAC+GGG | - | chr4_4:13511486-13511505 | Msa0670770:intron | 25.0% |
| ! | TTTCAAGAAAATAGAAAACG+GGG | - | chr4_4:13511487-13511506 | Msa0670770:intron | 25.0% |
| !!! | GTTTTTCTCTTATTTTTCAG+GGG | - | chr4_4:13511693-13511712 | Msa0670770:intron | 25.0% |
| !!! | ACATGTTCTTTTTTCATATC+GGG | + | chr4_4:13511754-13511773 | None:intergenic | 25.0% |
| ! | ATGCATAAGCTATTAAATTC+AGG | + | chr4_4:13512008-13512027 | None:intergenic | 25.0% |
| ! | TAACAGCTAGAAAAAGAATT+TGG | + | chr4_4:13512042-13512061 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | + | chr4_4:13512151-13512170 | None:intergenic | 25.0% |
| ! | CAGAATTATGAAGAAAACTT+TGG | + | chr4_4:13512380-13512399 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | + | chr4_4:13512504-13512523 | None:intergenic | 25.0% |
| ! | TGTAATCGATGCAATTATAA+GGG | - | chr4_4:13510948-13510967 | Msa0670770:CDS | 25.0% |
| ! | ATTATGAAGTCTATTGAATG+TGG | - | chr4_4:13511346-13511365 | Msa0670770:intron | 25.0% |
| ! | TTATGAAGTCTATTGAATGT+GGG | - | chr4_4:13511347-13511366 | Msa0670770:intron | 25.0% |
| ! | GTTTCAAGAAAATAGAAAAC+GGG | - | chr4_4:13511486-13511505 | Msa0670770:intron | 25.0% |
| ! | TTTCAAGAAAATAGAAAACG+GGG | - | chr4_4:13511487-13511506 | Msa0670770:intron | 25.0% |
| !!! | GTTTTTCTCTTATTTTTCAG+GGG | - | chr4_4:13511693-13511712 | Msa0670770:intron | 25.0% |
| !!! | ACATGTTCTTTTTTCATATC+GGG | + | chr4_4:13511754-13511773 | None:intergenic | 25.0% |
| ! | ATGCATAAGCTATTAAATTC+AGG | + | chr4_4:13512008-13512027 | None:intergenic | 25.0% |
| ! | TAACAGCTAGAAAAAGAATT+TGG | + | chr4_4:13512042-13512061 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | + | chr4_4:13512151-13512170 | None:intergenic | 25.0% |
| ! | CAGAATTATGAAGAAAACTT+TGG | + | chr4_4:13512380-13512399 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | + | chr4_4:13512504-13512523 | None:intergenic | 25.0% |
| ! | TTCTGATAATGATGGTTTGT+CGG | + | chr4_4:13510868-13510887 | None:intergenic | 30.0% |
| GTGTAATCGATGCAATTATA+AGG | - | chr4_4:13510947-13510966 | Msa0670770:CDS | 30.0% | |
| TATGAAGTCTATTGAATGTG+GGG | - | chr4_4:13511348-13511367 | Msa0670770:intron | 30.0% | |
| !! | TTGAACTGTTTTTCAACCAA+AGG | + | chr4_4:13511394-13511413 | None:intergenic | 30.0% |
| TGGCAACATGTTATAAGAAA+AGG | - | chr4_4:13511421-13511440 | Msa0670770:intron | 30.0% | |
| ATATGAAATTGTTGGAAGCT+CGG | - | chr4_4:13511462-13511481 | Msa0670770:intron | 30.0% | |
| AAAAGAAACACTTGCAAAGA+AGG | - | chr4_4:13511531-13511550 | Msa0670770:intron | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | + | chr4_4:13511618-13511637 | None:intergenic | 30.0% | |
| TACACAATTACAACAGACTT+AGG | + | chr4_4:13511880-13511899 | None:intergenic | 30.0% | |
| TTGTATAACATGCAAGACTA+TGG | + | chr4_4:13511923-13511942 | None:intergenic | 30.0% | |
| AGAGGATATATAGAAGCTAA+CGG | + | chr4_4:13512133-13512152 | None:intergenic | 30.0% | |
| AAGCTAAATTGTGTTTCAAG+AGG | + | chr4_4:13512327-13512346 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | + | chr4_4:13512460-13512479 | None:intergenic | 30.0% |
| ATGATTTATCATCACTTGTG+TGG | - | chr4_4:13512514-13512533 | Msa0670770:CDS | 30.0% | |
| ! | TTCTGATAATGATGGTTTGT+CGG | + | chr4_4:13510868-13510887 | None:intergenic | 30.0% |
| GTGTAATCGATGCAATTATA+AGG | - | chr4_4:13510947-13510966 | Msa0670770:CDS | 30.0% | |
| TATGAAGTCTATTGAATGTG+GGG | - | chr4_4:13511348-13511367 | Msa0670770:intron | 30.0% | |
| !! | TTGAACTGTTTTTCAACCAA+AGG | + | chr4_4:13511394-13511413 | None:intergenic | 30.0% |
| TGGCAACATGTTATAAGAAA+AGG | - | chr4_4:13511421-13511440 | Msa0670770:intron | 30.0% | |
| ATATGAAATTGTTGGAAGCT+CGG | - | chr4_4:13511462-13511481 | Msa0670770:intron | 30.0% | |
| AAAAGAAACACTTGCAAAGA+AGG | - | chr4_4:13511531-13511550 | Msa0670770:intron | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | + | chr4_4:13511618-13511637 | None:intergenic | 30.0% | |
| TACACAATTACAACAGACTT+AGG | + | chr4_4:13511880-13511899 | None:intergenic | 30.0% | |
| TTGTATAACATGCAAGACTA+TGG | + | chr4_4:13511923-13511942 | None:intergenic | 30.0% | |
| AGAGGATATATAGAAGCTAA+CGG | + | chr4_4:13512133-13512152 | None:intergenic | 30.0% | |
| AAGCTAAATTGTGTTTCAAG+AGG | + | chr4_4:13512327-13512346 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | + | chr4_4:13512460-13512479 | None:intergenic | 30.0% |
| ATGATTTATCATCACTTGTG+TGG | - | chr4_4:13512514-13512533 | Msa0670770:CDS | 30.0% | |
| GACAAACCATCATTATCAGA+AGG | - | chr4_4:13510867-13510886 | Msa0670770:CDS | 35.0% | |
| ! | TTGAGACCTTCTGATAATGA+TGG | + | chr4_4:13510876-13510895 | None:intergenic | 35.0% |
| ATCATTATCAGAAGGTCTCA+AGG | - | chr4_4:13510875-13510894 | Msa0670770:CDS | 35.0% | |
| TTTCAGTTACCAATGTAGCA+TGG | - | chr4_4:13511069-13511088 | Msa0670770:CDS | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | + | chr4_4:13511104-13511123 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | - | chr4_4:13511102-13511121 | Msa0670770:CDS | 35.0% | |
| AAGTCGTAAACATCCATGTT+TGG | + | chr4_4:13511163-13511182 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | + | chr4_4:13511189-13511208 | None:intergenic | 35.0% |
| !!! | GACAGGAATTTTGAGTTGTA+GGG | + | chr4_4:13511200-13511219 | None:intergenic | 35.0% |
| !!! | TGACAGGAATTTTGAGTTGT+AGG | + | chr4_4:13511201-13511220 | None:intergenic | 35.0% |
| AGAACTTTCTGCAGAATCAA+CGG | + | chr4_4:13511326-13511345 | None:intergenic | 35.0% | |
| AAAAACAGTTCAAGACCATG+TGG | - | chr4_4:13511401-13511420 | Msa0670770:intron | 35.0% | |
| TCTTATAACATGTTGCCACA+TGG | + | chr4_4:13511419-13511438 | None:intergenic | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | + | chr4_4:13511530-13511549 | None:intergenic | 35.0% |
| TGCAAAAACGAACCTGTAAA+TGG | + | chr4_4:13511783-13511802 | None:intergenic | 35.0% | |
| AAAAGATCACTGACAAACCT+AGG | + | chr4_4:13511856-13511875 | None:intergenic | 35.0% | |
| ! | CATCTTACCTTTTGTCTCAT+CGG | + | chr4_4:13512286-13512305 | None:intergenic | 35.0% |
| TCAACATATGGGAACAAGTT+GGG | + | chr4_4:13512492-13512511 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | + | chr4_4:13512493-13512512 | None:intergenic | 35.0% | |
| GACAAACCATCATTATCAGA+AGG | - | chr4_4:13510867-13510886 | Msa0670770:CDS | 35.0% | |
| ! | TTGAGACCTTCTGATAATGA+TGG | + | chr4_4:13510876-13510895 | None:intergenic | 35.0% |
| ATCATTATCAGAAGGTCTCA+AGG | - | chr4_4:13510875-13510894 | Msa0670770:CDS | 35.0% | |
| TTTCAGTTACCAATGTAGCA+TGG | - | chr4_4:13511069-13511088 | Msa0670770:CDS | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | + | chr4_4:13511104-13511123 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | - | chr4_4:13511102-13511121 | Msa0670770:CDS | 35.0% | |
| AAGTCGTAAACATCCATGTT+TGG | + | chr4_4:13511163-13511182 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | + | chr4_4:13511189-13511208 | None:intergenic | 35.0% |
| !!! | GACAGGAATTTTGAGTTGTA+GGG | + | chr4_4:13511200-13511219 | None:intergenic | 35.0% |
| !!! | TGACAGGAATTTTGAGTTGT+AGG | + | chr4_4:13511201-13511220 | None:intergenic | 35.0% |
| AGAACTTTCTGCAGAATCAA+CGG | + | chr4_4:13511326-13511345 | None:intergenic | 35.0% | |
| AAAAACAGTTCAAGACCATG+TGG | - | chr4_4:13511401-13511420 | Msa0670770:intron | 35.0% | |
| TCTTATAACATGTTGCCACA+TGG | + | chr4_4:13511419-13511438 | None:intergenic | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | + | chr4_4:13511530-13511549 | None:intergenic | 35.0% |
| TGCAAAAACGAACCTGTAAA+TGG | + | chr4_4:13511783-13511802 | None:intergenic | 35.0% | |
| AAAAGATCACTGACAAACCT+AGG | + | chr4_4:13511856-13511875 | None:intergenic | 35.0% | |
| ! | CATCTTACCTTTTGTCTCAT+CGG | + | chr4_4:13512286-13512305 | None:intergenic | 35.0% |
| TCAACATATGGGAACAAGTT+GGG | + | chr4_4:13512492-13512511 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | + | chr4_4:13512493-13512512 | None:intergenic | 35.0% | |
| ! | TGATGGTTTGTCGGTGAAAA+GGG | + | chr4_4:13510859-13510878 | None:intergenic | 40.0% |
| ! | ATGATGGTTTGTCGGTGAAA+AGG | + | chr4_4:13510860-13510879 | None:intergenic | 40.0% |
| ACATCTCCTCGACGAAATTA+AGG | + | chr4_4:13510929-13510948 | None:intergenic | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | - | chr4_4:13511093-13511112 | Msa0670770:CDS | 40.0% | |
| TGATGCTCATATGCCAAACA+TGG | - | chr4_4:13511147-13511166 | Msa0670770:intron | 40.0% | |
| CGAATATTGGACTAAGCCTT+TGG | - | chr4_4:13511375-13511394 | Msa0670770:intron | 40.0% | |
| AAAACGAACCTGTAAATGGC+TGG | + | chr4_4:13511779-13511798 | None:intergenic | 40.0% | |
| AAACCTAGGCAACTAGACTT+AGG | + | chr4_4:13511842-13511861 | None:intergenic | 40.0% | |
| GAGTAGCTTCAGCTACTTAT+AGG | - | chr4_4:13511963-13511982 | Msa0670770:CDS | 40.0% | |
| CAGGTTCGTTTCATTTACAC+CGG | + | chr4_4:13511989-13512008 | None:intergenic | 40.0% | |
| AGAAGCTACTCACTCAATAC+CGG | - | chr4_4:13512347-13512366 | Msa0670770:intron | 40.0% | |
| ATTGCGATGCACAACAACAT+TGG | - | chr4_4:13512418-13512437 | Msa0670770:CDS | 40.0% | |
| TTGCGATGCACAACAACATT+GGG | - | chr4_4:13512419-13512438 | Msa0670770:CDS | 40.0% | |
| CAACAACATTGGGTGGAAAT+TGG | - | chr4_4:13512429-13512448 | Msa0670770:CDS | 40.0% | |
| ! | TGATGGTTTGTCGGTGAAAA+GGG | + | chr4_4:13510859-13510878 | None:intergenic | 40.0% |
| ! | ATGATGGTTTGTCGGTGAAA+AGG | + | chr4_4:13510860-13510879 | None:intergenic | 40.0% |
| ACATCTCCTCGACGAAATTA+AGG | + | chr4_4:13510929-13510948 | None:intergenic | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | - | chr4_4:13511093-13511112 | Msa0670770:CDS | 40.0% | |
| TGATGCTCATATGCCAAACA+TGG | - | chr4_4:13511147-13511166 | Msa0670770:intron | 40.0% | |
| CGAATATTGGACTAAGCCTT+TGG | - | chr4_4:13511375-13511394 | Msa0670770:intron | 40.0% | |
| AAAACGAACCTGTAAATGGC+TGG | + | chr4_4:13511779-13511798 | None:intergenic | 40.0% | |
| AAACCTAGGCAACTAGACTT+AGG | + | chr4_4:13511842-13511861 | None:intergenic | 40.0% | |
| GAGTAGCTTCAGCTACTTAT+AGG | - | chr4_4:13511963-13511982 | Msa0670770:CDS | 40.0% | |
| CAGGTTCGTTTCATTTACAC+CGG | + | chr4_4:13511989-13512008 | None:intergenic | 40.0% | |
| AGAAGCTACTCACTCAATAC+CGG | - | chr4_4:13512347-13512366 | Msa0670770:intron | 40.0% | |
| ATTGCGATGCACAACAACAT+TGG | - | chr4_4:13512418-13512437 | Msa0670770:CDS | 40.0% | |
| TTGCGATGCACAACAACATT+GGG | - | chr4_4:13512419-13512438 | Msa0670770:CDS | 40.0% | |
| CAACAACATTGGGTGGAAAT+TGG | - | chr4_4:13512429-13512448 | Msa0670770:CDS | 40.0% | |
| CACTCTCCTTAATTTCGTCG+AGG | - | chr4_4:13510920-13510939 | Msa0670770:CDS | 45.0% | |
| CATCAGAAGCCATGCTACAT+TGG | + | chr4_4:13511081-13511100 | None:intergenic | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | - | chr4_4:13511362-13511381 | Msa0670770:intron | 45.0% | |
| ATTCTCGCGACCAAGACAAA+CGG | + | chr4_4:13511558-13511577 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | - | chr4_4:13511592-13511611 | Msa0670770:intron | 45.0% | |
| ACATGTTGCCAGCCATTTAC+AGG | - | chr4_4:13511768-13511787 | Msa0670770:intron | 45.0% | |
| GTACCTAAGTCTAGTTGCCT+AGG | - | chr4_4:13511836-13511855 | Msa0670770:CDS | 45.0% | |
| AGCTTCAGCTACTTATAGGC+CGG | - | chr4_4:13511967-13511986 | Msa0670770:CDS | 45.0% | |
| AGCTCAACCGATGAGACAAA+AGG | - | chr4_4:13512276-13512295 | Msa0670770:CDS | 45.0% | |
| AGAAAACTTTGGTCCTGCTC+CGG | + | chr4_4:13512369-13512388 | None:intergenic | 45.0% | |
| CACTCTCCTTAATTTCGTCG+AGG | - | chr4_4:13510920-13510939 | Msa0670770:CDS | 45.0% | |
| CATCAGAAGCCATGCTACAT+TGG | + | chr4_4:13511081-13511100 | None:intergenic | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | - | chr4_4:13511362-13511381 | Msa0670770:intron | 45.0% | |
| ATTCTCGCGACCAAGACAAA+CGG | + | chr4_4:13511558-13511577 | None:intergenic | 45.0% | |
| CTACGTGCAGTCAATCAACT+AGG | - | chr4_4:13511592-13511611 | Msa0670770:intron | 45.0% | |
| ACATGTTGCCAGCCATTTAC+AGG | - | chr4_4:13511768-13511787 | Msa0670770:intron | 45.0% | |
| GTACCTAAGTCTAGTTGCCT+AGG | - | chr4_4:13511836-13511855 | Msa0670770:CDS | 45.0% | |
| AGCTTCAGCTACTTATAGGC+CGG | - | chr4_4:13511967-13511986 | Msa0670770:CDS | 45.0% | |
| AGCTCAACCGATGAGACAAA+AGG | - | chr4_4:13512276-13512295 | Msa0670770:CDS | 45.0% | |
| AGAAAACTTTGGTCCTGCTC+CGG | + | chr4_4:13512369-13512388 | None:intergenic | 45.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4_4:13511545-13511564 | Msa0670770:intron | 50.0% | |
| TTCTCGCGACCAAGACAAAC+GGG | + | chr4_4:13511557-13511576 | None:intergenic | 50.0% | |
| TACTCACTCAATACCGGAGC+AGG | - | chr4_4:13512353-13512372 | Msa0670770:intron | 50.0% | |
| CGATGCACAACAACATTGGG+TGG | - | chr4_4:13512422-13512441 | Msa0670770:CDS | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4_4:13511545-13511564 | Msa0670770:intron | 50.0% | |
| TTCTCGCGACCAAGACAAAC+GGG | + | chr4_4:13511557-13511576 | None:intergenic | 50.0% | |
| TACTCACTCAATACCGGAGC+AGG | - | chr4_4:13512353-13512372 | Msa0670770:intron | 50.0% | |
| CGATGCACAACAACATTGGG+TGG | - | chr4_4:13512422-13512441 | Msa0670770:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 13510852 | 13512539 | 13510852 | ID=Msa0670770;Name=Msa0670770 |
| chr4_4 | mRNA | 13510852 | 13512539 | 13510852 | ID=Msa0670770-mRNA-1;Parent=Msa0670770;Name=Msa0670770-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|5|0|312 |
| chr4_4 | exon | 13512418 | 13512539 | 13512418 | ID=Msa0670770-mRNA-1:exon:4131;Parent=Msa0670770-mRNA-1 |
| chr4_4 | exon | 13512168 | 13512316 | 13512168 | ID=Msa0670770-mRNA-1:exon:4130;Parent=Msa0670770-mRNA-1 |
| chr4_4 | exon | 13511769 | 13512074 | 13511769 | ID=Msa0670770-mRNA-1:exon:4129;Parent=Msa0670770-mRNA-1 |
| chr4_4 | exon | 13511602 | 13511678 | 13511602 | ID=Msa0670770-mRNA-1:exon:4128;Parent=Msa0670770-mRNA-1 |
| chr4_4 | exon | 13510852 | 13511136 | 13510852 | ID=Msa0670770-mRNA-1:exon:4127;Parent=Msa0670770-mRNA-1 |
| chr4_4 | CDS | 13512418 | 13512539 | 13512418 | ID=Msa0670770-mRNA-1:cds;Parent=Msa0670770-mRNA-1 |
| chr4_4 | CDS | 13512168 | 13512316 | 13512168 | ID=Msa0670770-mRNA-1:cds;Parent=Msa0670770-mRNA-1 |
| chr4_4 | CDS | 13511769 | 13512074 | 13511769 | ID=Msa0670770-mRNA-1:cds;Parent=Msa0670770-mRNA-1 |
| chr4_4 | CDS | 13511602 | 13511678 | 13511602 | ID=Msa0670770-mRNA-1:cds;Parent=Msa0670770-mRNA-1 |
| chr4_4 | CDS | 13510852 | 13511136 | 13510852 | ID=Msa0670770-mRNA-1:cds;Parent=Msa0670770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
