AlfalfaGEDB | Msa0670860

M. sativa cultivar zhongmu-4 / Msa0670860

KEGG: K14491
GO: -
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670860	KEH29069.1	88.793	116	13	0	1	116	1	116	2.74e-71	222

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670860	sp\|Q8L9Y3\|ARR14_ARATH	45.536	112	59	2	7	116	4	115	3.81e-27	105

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670860	A0A072UH32	88.793	116	13	0	1	116	1	116	1.31e-71	222

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TFs/TRs:

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Gene ID	Type	Classification
Msa0670860	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670860	MtrunA17_Chr4g0009901	87.931	116	14	0	1	116	1	116	2.02e-72	216
Msa0670860	MtrunA17_Chr4g0009851	79.487	117	23	1	1	116	1	117	1.24e-63	195
Msa0670860	MtrunA17_Chr4g0010001	83.146	89	15	0	1	89	1	89	1.24e-52	160
Msa0670860	MtrunA17_Chr5g0423031	85.393	89	13	0	1	89	1	89	1.71e-52	163
Msa0670860	MtrunA17_Chr4g0009981	84.375	64	10	0	53	116	1	64	1.66e-34	119
Msa0670860	MtrunA17_Chr1g0161431	50.926	108	52	1	10	116	11	118	3.60e-33	121
Msa0670860	MtrunA17_Chr8g0391911	47.664	107	55	1	10	115	9	115	6.12e-31	110
Msa0670860	MtrunA17_Chr6g0456631	45.455	110	58	1	9	116	8	117	1.55e-29	104
Msa0670860	MtrunA17_Chr8g0383961	47.107	121	59	2	1	116	1	121	2.50e-29	106
Msa0670860	MtrunA17_Chr4g0011071	77.966	59	13	0	58	116	38	96	2.08e-28	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0670860	AT2G01760.1	45.536	112	59	2	7	116	4	115	3.87e-28	105
Msa0670860	AT1G67710.1	44.860	107	58	1	11	116	8	114	7.23e-28	106
Msa0670860	AT3G16857.1	42.593	108	61	1	10	116	33	140	8.44e-25	97.8
Msa0670860	AT3G16857.2	42.593	108	61	1	10	116	33	140	8.48e-25	97.8
Msa0670860	AT2G01760.2	36.429	140	59	3	7	116	4	143	2.23e-22	90.5
Msa0670860	AT4G31920.1	38.889	108	65	1	10	116	13	120	3.55e-21	87.4
Msa0670860	AT2G25180.1	38.889	108	65	1	10	116	13	120	6.50e-21	86.7
Msa0670860	AT5G58080.1	37.963	108	65	2	10	116	14	120	4.60e-15	70.1
Msa0670860	AT5G49240.1	31.193	109	74	1	9	116	37	145	8.21e-15	68.6
Msa0670860	AT1G49190.1	31.818	110	70	2	10	116	30	137	4.32e-14	67.4

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Find 22 sgRNAs with CRISPR-Local

Find 26 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGACTAACCTTGATAA+TGG	0.378712	4_4:-13717087	None:intergenic
AAGTCATAAGCATCCATGTT+TGG	0.471983	4_4:-13717311	None:intergenic
AATAAATTCTTACTAATGAC+AGG	0.461511	4_4:-13717365	None:intergenic
AATGTGGGGCGTGTACATAT+TGG	0.479655	4_4:+13717508	Msa0670860:CDS
ACATCTCCTCAATAGAGTTG+AGG	0.625514	4_4:-13717054	None:intergenic
ATCAGAAGCTGTGTTACATT+TGG	0.412873	4_4:-13717228	None:intergenic
ATCATTCCCTGCTGGTCTCA+AGG	0.520371	4_4:+13717003	Msa0670860:CDS
ATTATGAAGTCTATTCAATG+TGG	0.558796	4_4:+13717492	Msa0670860:CDS
CAATAACCTTGAGACCAGCA+GGG	0.699486	4_4:-13717009	None:intergenic
CACTTTCCTCAACTCTATTG+AGG	0.492388	4_4:+13717048	Msa0670860:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTGACTAACCTTGATAA+TGG	-	chr4_4:13717090-13717109	None:intergenic	30.0%
CATTCTTTCCAACAAATTCA+AGG	-	chr4_4:13717255-13717274	None:intergenic	30.0%
TATGAAGTCTATTCAATGTG+GGG	+	chr4_4:13717494-13717513	Msa0670860:CDS	30.0%
GAAAGTGATGTCATGATCAA+TGG	-	chr4_4:13717035-13717054	None:intergenic	35.0%
ATCAGAAGCTGTGTTACATT+TGG	-	chr4_4:13717231-13717250	None:intergenic	35.0%
TTCTGATGCCTTGAATTTGT+TGG	+	chr4_4:13717244-13717263	Msa0670860:CDS	35.0%
AAGTCATAAGCATCCATGTT+TGG	-	chr4_4:13717314-13717333	None:intergenic	35.0%
CACTTTCCTCAACTCTATTG+AGG	+	chr4_4:13717048-13717067	Msa0670860:CDS	40.0%
ACATCTCCTCAATAGAGTTG+AGG	-	chr4_4:13717057-13717076	None:intergenic	40.0%
TGATGCTCATATGCCAAACA+TGG	+	chr4_4:13717298-13717317	Msa0670860:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	13716980	13717542	13716980	ID=Msa0670860;Name=Msa0670860
chr4_4	mRNA	13716980	13717542	13716980	ID=Msa0670860-mRNA-1;Parent=Msa0670860;Name=Msa0670860-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|0.5\|0.66\|3\|0\|116
chr4_4	exon	13716980	13717097	13716980	ID=Msa0670860-mRNA-1:exon:4174;Parent=Msa0670860-mRNA-1
chr4_4	exon	13717225	13717374	13717225	ID=Msa0670860-mRNA-1:exon:4175;Parent=Msa0670860-mRNA-1
chr4_4	exon	13717463	13717542	13717463	ID=Msa0670860-mRNA-1:exon:4176;Parent=Msa0670860-mRNA-1
chr4_4	CDS	13716980	13717097	13716980	ID=Msa0670860-mRNA-1:cds;Parent=Msa0670860-mRNA-1
chr4_4	CDS	13717225	13717374	13717225	ID=Msa0670860-mRNA-1:cds;Parent=Msa0670860-mRNA-1
chr4_4	CDS	13717463	13717542	13717463	ID=Msa0670860-mRNA-1:cds;Parent=Msa0670860-mRNA-1

Gene Sequence	>Msa0670860 ATGGCTGTTTTCGTTGACAACCCATCATTCCCTGCTGGTCTCAAGGTTATTGCCATTGATCATGACATCACTTTCCTCAACTCTATTGAGGAGATGTGTAATCGATTCCATTATCAAGTTACCAAATGTAACACAGCTTCTGATGCCTTGAATTTGTTGGAAAGAATGGACTGTTTCGATTTAATGTTGATTGATGCTCATATGCCAAACATGGATGCTTATGACTTTGTCCAAAATGTTACCCTAAAACTCAACATTCCTGTCATTATGATGGCTGTTGATTTCGCAAAAAGTTCTATTATGAAGTCTATTCAATGTGGGGCGTGTACATATTGGACTAAGCCTTTG
Protein sequence	>Msa0670860 MAVFVDNPSFPAGLKVIAIDHDITFLNSIEEMCNRFHYQVTKCNTASDALNLLERMDCFDLMLIDAHMPNMDAYDFVQNVTLKLNIPVIMMAVDFAKSSIMKSIQCGACTYWTKPL