Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670930 | XP_013455021.2 | 87.220 | 313 | 38 | 1 | 1 | 313 | 1 | 311 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670930 | sp|Q8L9Y3|ARR14_ARATH | 38.403 | 263 | 121 | 5 | 7 | 232 | 4 | 262 | 1.94e-54 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670930 | A0A396I0H3 | 84.713 | 314 | 45 | 2 | 1 | 313 | 1 | 312 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0670930 | TF | GARP-ARR-B |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670930 | MtrunA17_Chr4g0009851 | 84.713 | 314 | 45 | 2 | 1 | 313 | 1 | 312 | 0.0 | 548 |
| Msa0670930 | MtrunA17_Chr4g0009981 | 86.590 | 261 | 33 | 1 | 53 | 313 | 1 | 259 | 3.26e-170 | 472 |
| Msa0670930 | MtrunA17_Chr4g0009901 | 75.620 | 242 | 57 | 1 | 1 | 242 | 1 | 240 | 8.01e-129 | 368 |
| Msa0670930 | MtrunA17_Chr4g0011071 | 79.137 | 139 | 27 | 1 | 55 | 193 | 35 | 171 | 2.03e-74 | 226 |
| Msa0670930 | MtrunA17_Chr6g0471041 | 46.758 | 293 | 137 | 8 | 10 | 296 | 14 | 293 | 5.50e-71 | 226 |
| Msa0670930 | MtrunA17_Chr1g0161431 | 37.808 | 365 | 160 | 9 | 10 | 309 | 11 | 373 | 3.24e-68 | 224 |
| Msa0670930 | MtrunA17_Chr4g0009991 | 78.151 | 119 | 23 | 2 | 101 | 219 | 1 | 116 | 4.28e-58 | 182 |
| Msa0670930 | MtrunA17_Chr3g0123131 | 40.316 | 253 | 118 | 5 | 10 | 231 | 13 | 263 | 1.70e-57 | 194 |
| Msa0670930 | MtrunA17_Chr8g0376881 | 39.695 | 262 | 125 | 6 | 9 | 239 | 24 | 283 | 2.57e-56 | 190 |
| Msa0670930 | MtrunA17_Chr4g0067981 | 38.868 | 265 | 133 | 4 | 10 | 248 | 31 | 292 | 3.98e-55 | 190 |
| Msa0670930 | MtrunA17_Chr2g0294911 | 39.245 | 265 | 133 | 4 | 10 | 248 | 29 | 291 | 5.77e-55 | 188 |
| Msa0670930 | MtrunA17_Chr4g0010001 | 83.146 | 89 | 15 | 0 | 1 | 89 | 1 | 89 | 5.39e-51 | 163 |
| Msa0670930 | MtrunA17_Chr8g0391911 | 39.256 | 242 | 119 | 4 | 4 | 219 | 3 | 242 | 1.49e-50 | 168 |
| Msa0670930 | MtrunA17_Chr1g0149841 | 39.200 | 250 | 118 | 4 | 7 | 226 | 2 | 247 | 1.72e-50 | 174 |
| Msa0670930 | MtrunA17_Chr7g0275401 | 37.600 | 250 | 129 | 4 | 7 | 229 | 2 | 251 | 8.96e-50 | 167 |
| Msa0670930 | MtrunA17_Chr5g0423031 | 80.899 | 89 | 17 | 0 | 1 | 89 | 1 | 89 | 1.86e-47 | 157 |
| Msa0670930 | MtrunA17_Chr8g0383961 | 43.220 | 236 | 101 | 7 | 1 | 231 | 1 | 208 | 6.82e-47 | 159 |
| Msa0670930 | MtrunA17_Chr3g0137101 | 37.652 | 247 | 124 | 3 | 10 | 226 | 8 | 254 | 1.19e-46 | 166 |
| Msa0670930 | MtrunA17_Chr7g0275891 | 34.409 | 279 | 142 | 5 | 7 | 244 | 2 | 280 | 8.90e-46 | 158 |
| Msa0670930 | MtrunA17_Chr4g0074401 | 32.800 | 250 | 142 | 4 | 10 | 233 | 17 | 266 | 1.92e-42 | 154 |
| Msa0670930 | MtrunA17_Chr2g0304841 | 34.510 | 255 | 132 | 4 | 10 | 229 | 18 | 272 | 2.95e-42 | 154 |
| Msa0670930 | MtrunA17_Chr4g0074411 | 33.065 | 248 | 143 | 4 | 9 | 233 | 17 | 264 | 5.72e-42 | 153 |
| Msa0670930 | MtrunA17_Chr6g0456631 | 43.750 | 160 | 86 | 2 | 4 | 161 | 3 | 160 | 3.22e-41 | 141 |
| Msa0670930 | MtrunA17_Chr1g0149851 | 34.483 | 261 | 130 | 4 | 7 | 226 | 2 | 262 | 3.31e-41 | 150 |
| Msa0670930 | MtrunA17_Chr3g0134461 | 37.264 | 212 | 104 | 4 | 10 | 219 | 8 | 192 | 9.83e-39 | 135 |
| Msa0670930 | MtrunA17_Chr3g0134481 | 35.616 | 219 | 101 | 4 | 4 | 221 | 4 | 183 | 3.49e-37 | 131 |
| Msa0670930 | MtrunA17_Chr4g0074421 | 36.464 | 181 | 95 | 3 | 59 | 219 | 2 | 182 | 1.18e-35 | 127 |
| Msa0670930 | MtrunA17_Chr1g0149831 | 38.298 | 188 | 80 | 4 | 68 | 226 | 1 | 181 | 1.27e-31 | 118 |
| Msa0670930 | MtrunA17_Chr8g0350761 | 24.090 | 357 | 211 | 10 | 12 | 309 | 19 | 374 | 3.23e-22 | 96.7 |
| Msa0670930 | MtrunA17_Chr6g0473731 | 32.749 | 171 | 95 | 3 | 89 | 248 | 10 | 171 | 1.20e-20 | 91.7 |
| Msa0670930 | MtrunA17_Chr2g0324891 | 38.298 | 94 | 55 | 2 | 135 | 226 | 125 | 217 | 2.07e-14 | 73.2 |
| Msa0670930 | MtrunA17_Chr5g0417521 | 55.556 | 54 | 23 | 1 | 170 | 222 | 15 | 68 | 1.05e-13 | 70.9 |
| Msa0670930 | MtrunA17_Chr6g0461641 | 44.872 | 78 | 42 | 1 | 170 | 246 | 42 | 119 | 3.17e-13 | 69.7 |
| Msa0670930 | MtrunA17_Chr7g0261911 | 40.594 | 101 | 55 | 3 | 161 | 256 | 253 | 353 | 3.59e-13 | 69.7 |
| Msa0670930 | MtrunA17_Chr4g0040481 | 48.276 | 58 | 30 | 0 | 169 | 226 | 157 | 214 | 5.06e-13 | 69.3 |
| Msa0670930 | MtrunA17_Chr7g0254981 | 40.659 | 91 | 51 | 2 | 168 | 257 | 48 | 136 | 6.51e-13 | 67.8 |
| Msa0670930 | MtrunA17_Chr4g0042451 | 51.852 | 54 | 25 | 1 | 170 | 222 | 17 | 70 | 1.42e-12 | 67.4 |
| Msa0670930 | MtrunA17_Chr2g0321461 | 53.704 | 54 | 24 | 1 | 170 | 222 | 45 | 98 | 2.11e-12 | 67.0 |
| Msa0670930 | MtrunA17_Chr5g0400241 | 36.250 | 80 | 51 | 0 | 169 | 248 | 310 | 389 | 3.30e-12 | 67.0 |
| Msa0670930 | MtrunA17_Chr2g0291021 | 55.556 | 54 | 23 | 1 | 170 | 222 | 49 | 102 | 1.06e-11 | 64.7 |
| Msa0670930 | MtrunA17_Chr7g0274471 | 40.659 | 91 | 51 | 3 | 170 | 258 | 218 | 307 | 1.30e-11 | 65.1 |
| Msa0670930 | MtrunA17_Chr7g0255711 | 48.276 | 58 | 30 | 0 | 169 | 226 | 90 | 147 | 1.41e-11 | 64.3 |
| Msa0670930 | MtrunA17_Chr4g0054981 | 48.148 | 54 | 28 | 0 | 169 | 222 | 309 | 362 | 1.65e-11 | 64.7 |
| Msa0670930 | MtrunA17_Chr1g0198601 | 45.122 | 82 | 35 | 3 | 151 | 229 | 199 | 273 | 2.49e-11 | 63.9 |
| Msa0670930 | MtrunA17_Chr4g0031961 | 46.552 | 58 | 31 | 0 | 169 | 226 | 130 | 187 | 2.93e-11 | 63.2 |
| Msa0670930 | MtrunA17_Chr7g0242521 | 50.000 | 70 | 26 | 3 | 157 | 222 | 5 | 69 | 5.08e-11 | 61.6 |
| Msa0670930 | MtrunA17_Chr1g0190301 | 47.059 | 68 | 34 | 2 | 166 | 231 | 171 | 238 | 5.14e-11 | 63.2 |
| Msa0670930 | MtrunA17_Chr7g0258551 | 47.368 | 57 | 29 | 1 | 167 | 222 | 209 | 265 | 6.87e-11 | 62.8 |
| Msa0670930 | MtrunA17_Chr1g0175091 | 42.647 | 68 | 36 | 2 | 156 | 222 | 246 | 311 | 8.98e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0670930 | AT2G01760.1 | 38.403 | 263 | 121 | 5 | 7 | 232 | 4 | 262 | 1.98e-55 | 184 |
| Msa0670930 | AT1G67710.1 | 40.075 | 267 | 124 | 8 | 11 | 243 | 8 | 272 | 2.77e-53 | 182 |
| Msa0670930 | AT3G16857.1 | 36.242 | 298 | 135 | 8 | 10 | 252 | 33 | 330 | 2.41e-50 | 177 |
| Msa0670930 | AT3G16857.2 | 36.242 | 298 | 135 | 8 | 10 | 252 | 33 | 330 | 2.72e-50 | 177 |
| Msa0670930 | AT2G01760.2 | 35.052 | 291 | 120 | 7 | 7 | 232 | 4 | 290 | 1.50e-49 | 170 |
| Msa0670930 | AT4G31920.1 | 36.481 | 233 | 138 | 2 | 10 | 232 | 13 | 245 | 5.19e-46 | 164 |
| Msa0670930 | AT2G25180.1 | 38.075 | 239 | 126 | 5 | 10 | 226 | 13 | 251 | 7.61e-44 | 158 |
| Msa0670930 | AT3G16857.3 | 35.135 | 259 | 113 | 8 | 49 | 252 | 2 | 260 | 3.42e-39 | 145 |
| Msa0670930 | AT5G58080.1 | 37.008 | 254 | 126 | 7 | 10 | 236 | 14 | 260 | 5.11e-39 | 145 |
| Msa0670930 | AT1G67710.2 | 40.191 | 209 | 90 | 7 | 68 | 243 | 1 | 207 | 8.72e-36 | 134 |
| Msa0670930 | AT2G01760.3 | 35.821 | 201 | 89 | 4 | 68 | 232 | 1 | 197 | 5.77e-35 | 129 |
| Msa0670930 | AT5G49240.1 | 31.356 | 236 | 137 | 5 | 9 | 219 | 37 | 272 | 3.42e-33 | 124 |
| Msa0670930 | AT3G62670.1 | 30.258 | 271 | 159 | 9 | 28 | 272 | 53 | 319 | 9.78e-32 | 123 |
| Msa0670930 | AT1G49190.1 | 27.734 | 256 | 154 | 6 | 10 | 234 | 30 | 285 | 1.08e-28 | 114 |
| Msa0670930 | AT1G67710.3 | 38.624 | 189 | 81 | 7 | 88 | 243 | 12 | 198 | 7.66e-27 | 109 |
| Msa0670930 | AT5G07210.2 | 26.667 | 270 | 144 | 6 | 14 | 231 | 16 | 283 | 4.86e-25 | 105 |
| Msa0670930 | AT5G07210.1 | 25.899 | 278 | 144 | 7 | 14 | 231 | 16 | 291 | 1.59e-22 | 98.2 |
| Msa0670930 | AT2G27070.1 | 25.379 | 264 | 140 | 8 | 14 | 222 | 16 | 277 | 1.72e-19 | 89.4 |
| Msa0670930 | AT1G49190.2 | 32.258 | 124 | 83 | 1 | 10 | 132 | 30 | 153 | 1.36e-17 | 83.6 |
| Msa0670930 | AT5G29000.4 | 40.777 | 103 | 52 | 4 | 135 | 235 | 203 | 298 | 1.21e-15 | 76.6 |
| Msa0670930 | AT5G29000.2 | 38.938 | 113 | 60 | 4 | 135 | 245 | 203 | 308 | 1.40e-15 | 77.0 |
| Msa0670930 | AT5G29000.1 | 38.938 | 113 | 60 | 4 | 135 | 245 | 160 | 265 | 1.56e-15 | 76.6 |
| Msa0670930 | AT5G29000.3 | 38.938 | 113 | 60 | 4 | 135 | 245 | 160 | 265 | 1.56e-15 | 76.6 |
| Msa0670930 | AT5G44190.1 | 48.333 | 60 | 31 | 0 | 167 | 226 | 144 | 203 | 1.37e-13 | 71.2 |
| Msa0670930 | AT5G44190.2 | 48.333 | 60 | 31 | 0 | 167 | 226 | 144 | 203 | 1.50e-13 | 70.9 |
| Msa0670930 | AT3G04030.1 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 4.21e-13 | 69.7 |
| Msa0670930 | AT3G04030.3 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 4.85e-13 | 69.7 |
| Msa0670930 | AT4G28610.1 | 47.126 | 87 | 40 | 4 | 170 | 252 | 225 | 309 | 7.35e-13 | 68.9 |
| Msa0670930 | AT3G46640.3 | 44.444 | 81 | 42 | 2 | 146 | 226 | 123 | 200 | 8.61e-13 | 68.6 |
| Msa0670930 | AT5G18240.2 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.73e-13 | 68.9 |
| Msa0670930 | AT5G18240.3 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 8.73e-13 | 68.9 |
| Msa0670930 | AT3G46640.2 | 44.444 | 81 | 42 | 2 | 146 | 226 | 123 | 200 | 8.88e-13 | 68.2 |
| Msa0670930 | AT3G46640.1 | 44.444 | 81 | 42 | 2 | 146 | 226 | 123 | 200 | 8.88e-13 | 68.2 |
| Msa0670930 | AT5G18240.5 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 9.52e-13 | 68.6 |
| Msa0670930 | AT5G18240.1 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 9.76e-13 | 68.6 |
| Msa0670930 | AT5G18240.4 | 55.556 | 54 | 23 | 1 | 170 | 222 | 45 | 98 | 9.76e-13 | 68.6 |
| Msa0670930 | AT2G01060.1 | 45.783 | 83 | 42 | 2 | 159 | 238 | 4 | 86 | 1.23e-12 | 67.4 |
| Msa0670930 | AT5G59570.2 | 42.105 | 76 | 41 | 1 | 151 | 226 | 125 | 197 | 1.73e-12 | 67.4 |
| Msa0670930 | AT5G59570.1 | 42.105 | 76 | 41 | 1 | 151 | 226 | 125 | 197 | 1.73e-12 | 67.4 |
| Msa0670930 | AT3G04450.3 | 48.276 | 58 | 29 | 1 | 166 | 222 | 234 | 291 | 1.83e-12 | 67.4 |
| Msa0670930 | AT3G04030.2 | 52.830 | 53 | 25 | 0 | 170 | 222 | 45 | 97 | 2.79e-12 | 67.4 |
| Msa0670930 | AT3G04450.1 | 48.276 | 58 | 29 | 1 | 166 | 222 | 234 | 291 | 3.93e-12 | 67.0 |
| Msa0670930 | AT3G04450.4 | 48.276 | 58 | 29 | 1 | 166 | 222 | 194 | 251 | 4.58e-12 | 66.6 |
| Msa0670930 | AT3G04450.2 | 48.276 | 58 | 29 | 1 | 166 | 222 | 194 | 251 | 4.58e-12 | 66.6 |
| Msa0670930 | AT1G69580.1 | 51.852 | 54 | 25 | 1 | 170 | 222 | 34 | 87 | 7.35e-12 | 65.9 |
| Msa0670930 | AT2G20570.1 | 46.552 | 58 | 31 | 0 | 169 | 226 | 152 | 209 | 7.53e-12 | 66.2 |
| Msa0670930 | AT1G69580.2 | 51.852 | 54 | 25 | 1 | 170 | 222 | 34 | 87 | 7.96e-12 | 65.5 |
| Msa0670930 | AT5G05090.1 | 42.697 | 89 | 39 | 3 | 138 | 226 | 61 | 137 | 9.12e-12 | 64.7 |
| Msa0670930 | AT2G40970.1 | 46.552 | 58 | 31 | 0 | 169 | 226 | 104 | 161 | 1.15e-11 | 64.3 |
| Msa0670930 | AT3G10760.1 | 48.276 | 58 | 30 | 0 | 169 | 226 | 104 | 161 | 1.47e-11 | 64.7 |
| Msa0670930 | AT4G18020.8 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.73e-11 | 65.1 |
| Msa0670930 | AT4G18020.11 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.73e-11 | 65.1 |
| Msa0670930 | AT4G18020.4 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.73e-11 | 65.1 |
| Msa0670930 | AT4G18020.5 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.73e-11 | 65.1 |
| Msa0670930 | AT4G18020.10 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.73e-11 | 65.1 |
| Msa0670930 | AT4G18020.7 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 1.73e-11 | 65.1 |
| Msa0670930 | AT4G18020.3 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 2.18e-11 | 65.1 |
| Msa0670930 | AT4G18020.2 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 2.18e-11 | 65.1 |
| Msa0670930 | AT4G18020.1 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 2.18e-11 | 65.1 |
| Msa0670930 | AT4G18020.6 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 2.18e-11 | 65.1 |
| Msa0670930 | AT4G18020.9 | 36.842 | 76 | 45 | 1 | 152 | 227 | 281 | 353 | 2.18e-11 | 65.1 |
| Msa0670930 | AT2G20570.2 | 47.273 | 55 | 29 | 0 | 172 | 226 | 171 | 225 | 4.98e-11 | 63.5 |
| Msa0670930 | AT3G24120.2 | 48.529 | 68 | 31 | 2 | 170 | 233 | 41 | 108 | 6.41e-11 | 62.8 |
| Msa0670930 | AT3G24120.1 | 48.529 | 68 | 31 | 2 | 170 | 233 | 41 | 108 | 6.64e-11 | 62.4 |
Find 56 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATATTGCCAGCCATTTAC+AGG | 0.282271 | 4_4:+13854646 | Msa0670930:CDS |
| TTCAGTTACCAAATGTAGTA+TGG | 0.293347 | 4_4:+13853921 | Msa0670930:intron |
| CAACGACATTGGGTGGAAAT+TGG | 0.345706 | 4_4:+13855168 | Msa0670930:CDS |
| GACATTGTGTAGCAGAATTC+AGG | 0.369767 | 4_4:-13855128 | None:intergenic |
| TGAGTTGTAGGGTAACATTT+TGG | 0.376494 | 4_4:-13854038 | None:intergenic |
| GATAAATCATCATCAACATA+TGG | 0.380393 | 4_4:-13855240 | None:intergenic |
| AATGTGGGGCTTGCGAATAT+TGG | 0.385194 | 4_4:+13854234 | Msa0670930:CDS |
| CGAATATTGGACTAAGCCTT+TGG | 0.392176 | 4_4:+13854247 | Msa0670930:CDS |
| TGACAGGAATGTTGAGTTGT+AGG | 0.408636 | 4_4:-13854050 | None:intergenic |
| ATCAGAAGCCATACTACATT+TGG | 0.409595 | 4_4:-13853929 | None:intergenic |
| AATAAAGAATATGAAATTGT+TGG | 0.416766 | 4_4:+13854332 | Msa0670930:CDS |
| GGTTCAAGAAAATAGAAAAC+GGG | 0.418887 | 4_4:+13854364 | Msa0670930:CDS |
| CTTTCTTTCCAACATGTTGA+AGG | 0.419409 | 4_4:-13853953 | None:intergenic |
| CAAAGAAGGCCCGTTTGTCT+TGG | 0.435563 | 4_4:+13854423 | Msa0670930:CDS |
| AAAAGAAACACTTGCAAAGA+AGG | 0.435703 | 4_4:+13854409 | Msa0670930:CDS |
| TTGCGATGCACAACGACATT+GGG | 0.452490 | 4_4:+13855158 | Msa0670930:CDS |
| TTGAGACCGGCTGGGAATGA+TGG | 0.453544 | 4_4:-13853725 | None:intergenic |
| CTTCAACATGTTGGAAAGAA+AGG | 0.459586 | 4_4:+13853954 | Msa0670930:CDS |
| AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4_4:-13854066 | None:intergenic |
| ACATCTCCTCAATAGAGTTA+AGG | 0.467190 | 4_4:-13853778 | None:intergenic |
| TTCTCGTGACCAAGACAAAC+GGG | 0.467708 | 4_4:-13854432 | None:intergenic |
| TCAACATATGGGAACAAGTT+GGG | 0.468173 | 4_4:-13855228 | None:intergenic |
| GCAATAACCTTGAGACCGGC+TGG | 0.475576 | 4_4:-13853734 | None:intergenic |
| AAAAGTGTTGCTCATAATGT+TGG | 0.490442 | 4_4:-13855196 | None:intergenic |
| AAGTCATAAACATCCATGTC+TGG | 0.491105 | 4_4:-13854012 | None:intergenic |
| TGGTTCAAGAAAATAGAAAA+CGG | 0.501089 | 4_4:+13854363 | Msa0670930:CDS |
| AGGAAAGAATCATACTATCA+AGG | 0.510494 | 4_4:-13854493 | None:intergenic |
| ATTGCGATGCACAACGACAT+TGG | 0.516098 | 4_4:+13855157 | Msa0670930:CDS |
| TGTAATCGATATCATTATCA+AGG | 0.517908 | 4_4:+13853800 | Msa0670930:CDS |
| GACAGGAATGTTGAGTTGTA+GGG | 0.519779 | 4_4:-13854049 | None:intergenic |
| ATCATGAAGTCTATTGAATG+TGG | 0.526495 | 4_4:+13854218 | Msa0670930:CDS |
| ATTCTCGTGACCAAGACAAA+CGG | 0.526657 | 4_4:-13854433 | None:intergenic |
| AAAATGAACCTGTAAATGGC+TGG | 0.527802 | 4_4:-13854654 | None:intergenic |
| TTCTGATGCCTTCAACATGT+TGG | 0.527887 | 4_4:+13853945 | Msa0670930:CDS |
| CATGTTGCAAGAATTAGAAA+CGG | 0.528421 | 4_4:+13854299 | Msa0670930:CDS |
| AGAAAACTCTGGTCATGCTC+CGG | 0.537353 | 4_4:-13855105 | None:intergenic |
| CACTCTCCTTAACTCTATTG+AGG | 0.546467 | 4_4:+13853772 | Msa0670930:CDS |
| CTACGAGCAGTCAATCAACT+AGG | 0.547867 | 4_4:+13854470 | Msa0670930:CDS |
| ATAAATCATCATCAACATAT+GGG | 0.548211 | 4_4:-13855239 | None:intergenic |
| AGCTCAACAGAAGAGACAAA+AGG | 0.548661 | 4_4:+13855015 | Msa0670930:CDS |
| TCATGAAGTCTATTGAATGT+GGG | 0.549366 | 4_4:+13854219 | Msa0670930:CDS |
| ATCATTCCCAGCCGGTCTCA+AGG | 0.552068 | 4_4:+13853727 | Msa0670930:CDS |
| ATCAACATATGGGAACAAGT+TGG | 0.563419 | 4_4:-13855229 | None:intergenic |
| TGAGACCGGCTGGGAATGAT+GGG | 0.577892 | 4_4:-13853724 | None:intergenic |
| CGATGCACAACGACATTGGG+TGG | 0.580466 | 4_4:+13855161 | Msa0670930:CDS |
| AATTGCAATAACCTTGAGAC+CGG | 0.581075 | 4_4:-13853738 | None:intergenic |
| TGAAATTGTTGGAAGCTCGA+TGG | 0.585502 | 4_4:+13854343 | Msa0670930:CDS |
| CAGAATTCAGGAGAAAACTC+TGG | 0.590249 | 4_4:-13855116 | None:intergenic |
| AGAAGCTACTCACTCAATGC+CGG | 0.591913 | 4_4:+13855086 | Msa0670930:CDS |
| CATGAAGTCTATTGAATGTG+GGG | 0.606058 | 4_4:+13854220 | Msa0670930:CDS |
| CAATAACCTTGAGACCGGCT+GGG | 0.613963 | 4_4:-13853733 | None:intergenic |
| CAACAGAAGAGACAAAAGGT+AGG | 0.617016 | 4_4:+13855019 | Msa0670930:CDS |
| GACAACCCATCATTCCCAGC+CGG | 0.620153 | 4_4:+13853719 | Msa0670930:CDS |
| TGATGCTCATATGCCAGACA+TGG | 0.629107 | 4_4:+13853999 | Msa0670930:CDS |
| ATGATTTATCATCACTTGTG+TGG | 0.696325 | 4_4:+13855253 | Msa0670930:CDS |
| GTTCAAGAAAATAGAAAACG+GGG | 0.722642 | 4_4:+13854365 | Msa0670930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAGAATATGAAATTGT+TGG | + | chr4_4:13854332-13854351 | Msa0670930:CDS | 15.0% |
| !!! | AATATGTTCTTTTTTCATAT+CGG | - | chr4_4:13854633-13854652 | None:intergenic | 15.0% |
| !! | AATAAAGAATATGAAATTGT+TGG | + | chr4_4:13854332-13854351 | Msa0670930:CDS | 15.0% |
| !!! | AATATGTTCTTTTTTCATAT+CGG | - | chr4_4:13854633-13854652 | None:intergenic | 15.0% |
| !! | AAAAGATGAAAACTTGAATA+AGG | - | chr4_4:13853843-13853862 | None:intergenic | 20.0% |
| !!! | ATTCAAGTTTTCATCTTTTT+TGG | + | chr4_4:13853844-13853863 | Msa0670930:intron | 20.0% |
| !! | CAATATAAGAATAAACAAAC+AGG | - | chr4_4:13853896-13853915 | None:intergenic | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | - | chr4_4:13854069-13854088 | None:intergenic | 20.0% |
| !!! | ATATTTCTTTTTTGTAGTGA+TGG | + | chr4_4:13854172-13854191 | Msa0670930:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | - | chr4_4:13854516-13854535 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTAATTTTC+AGG | + | chr4_4:13854569-13854588 | Msa0670930:intron | 20.0% |
| !!! | TGTTTTTCTCTTAATTTTCA+GGG | + | chr4_4:13854570-13854589 | Msa0670930:intron | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | - | chr4_4:13854602-13854621 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | + | chr4_4:13854601-13854620 | Msa0670930:CDS | 20.0% |
| !!! | ATATGTTCTTTTTTCATATC+GGG | - | chr4_4:13854632-13854651 | None:intergenic | 20.0% |
| !!! | TGATTTTAAACTGACATTTA+TGG | + | chr4_4:13854930-13854949 | Msa0670930:intron | 20.0% |
| !!! | TTTTGCAGAAATATAGAAAT+CGG | + | chr4_4:13854986-13855005 | Msa0670930:intron | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | - | chr4_4:13855242-13855261 | None:intergenic | 20.0% |
| !! | AAAAGATGAAAACTTGAATA+AGG | - | chr4_4:13853843-13853862 | None:intergenic | 20.0% |
| !!! | ATTCAAGTTTTCATCTTTTT+TGG | + | chr4_4:13853844-13853863 | Msa0670930:intron | 20.0% |
| !! | CAATATAAGAATAAACAAAC+AGG | - | chr4_4:13853896-13853915 | None:intergenic | 20.0% |
| !! | AATAAATTCTTACTAATGAC+AGG | - | chr4_4:13854069-13854088 | None:intergenic | 20.0% |
| !!! | ATATTTCTTTTTTGTAGTGA+TGG | + | chr4_4:13854172-13854191 | Msa0670930:intron | 20.0% |
| !! | AGCATAGTAAAAAAGTAATT+AGG | - | chr4_4:13854516-13854535 | None:intergenic | 20.0% |
| !!! | ATGTTTTTCTCTTAATTTTC+AGG | + | chr4_4:13854569-13854588 | Msa0670930:intron | 20.0% |
| !!! | TGTTTTTCTCTTAATTTTCA+GGG | + | chr4_4:13854570-13854589 | Msa0670930:intron | 20.0% |
| !!! | ATGATTTTCAGAATCTTTTT+TGG | - | chr4_4:13854602-13854621 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTCTGAAAATCA+TGG | + | chr4_4:13854601-13854620 | Msa0670930:CDS | 20.0% |
| !!! | ATATGTTCTTTTTTCATATC+GGG | - | chr4_4:13854632-13854651 | None:intergenic | 20.0% |
| !!! | TGATTTTAAACTGACATTTA+TGG | + | chr4_4:13854930-13854949 | Msa0670930:intron | 20.0% |
| !!! | TTTTGCAGAAATATAGAAAT+CGG | + | chr4_4:13854986-13855005 | Msa0670930:intron | 20.0% |
| !! | ATAAATCATCATCAACATAT+GGG | - | chr4_4:13855242-13855261 | None:intergenic | 20.0% |
| ! | TGTAATCGATATCATTATCA+AGG | + | chr4_4:13853800-13853819 | Msa0670930:CDS | 25.0% |
| ! | TGGTTCAAGAAAATAGAAAA+CGG | + | chr4_4:13854363-13854382 | Msa0670930:CDS | 25.0% |
| !! | GTTTTTCTCTTAATTTTCAG+GGG | + | chr4_4:13854571-13854590 | Msa0670930:intron | 25.0% |
| ! | TACAAAAATGAACCTGTAAA+TGG | - | chr4_4:13854661-13854680 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | - | chr4_4:13854899-13854918 | None:intergenic | 25.0% |
| !!! | AAGTCAAATTTTGTTTCAAG+AGG | - | chr4_4:13855066-13855085 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | - | chr4_4:13855243-13855262 | None:intergenic | 25.0% |
| ! | TGTAATCGATATCATTATCA+AGG | + | chr4_4:13853800-13853819 | Msa0670930:CDS | 25.0% |
| ! | TGGTTCAAGAAAATAGAAAA+CGG | + | chr4_4:13854363-13854382 | Msa0670930:CDS | 25.0% |
| !! | GTTTTTCTCTTAATTTTCAG+GGG | + | chr4_4:13854571-13854590 | Msa0670930:intron | 25.0% |
| ! | TACAAAAATGAACCTGTAAA+TGG | - | chr4_4:13854661-13854680 | None:intergenic | 25.0% |
| ! | AGTAGTATATTATCAACAAG+AGG | - | chr4_4:13854899-13854918 | None:intergenic | 25.0% |
| !!! | AAGTCAAATTTTGTTTCAAG+AGG | - | chr4_4:13855066-13855085 | None:intergenic | 25.0% |
| ! | GATAAATCATCATCAACATA+TGG | - | chr4_4:13855243-13855262 | None:intergenic | 25.0% |
| TTCAGTTACCAAATGTAGTA+TGG | + | chr4_4:13853921-13853940 | Msa0670930:intron | 30.0% | |
| ! | CTTCATGATAGAACTTTTTG+TGG | - | chr4_4:13854207-13854226 | None:intergenic | 30.0% |
| ATCATGAAGTCTATTGAATG+TGG | + | chr4_4:13854218-13854237 | Msa0670930:CDS | 30.0% | |
| TCATGAAGTCTATTGAATGT+GGG | + | chr4_4:13854219-13854238 | Msa0670930:CDS | 30.0% | |
| CATGTTGCAAGAATTAGAAA+CGG | + | chr4_4:13854299-13854318 | Msa0670930:CDS | 30.0% | |
| GGTTCAAGAAAATAGAAAAC+GGG | + | chr4_4:13854364-13854383 | Msa0670930:CDS | 30.0% | |
| GTTCAAGAAAATAGAAAACG+GGG | + | chr4_4:13854365-13854384 | Msa0670930:CDS | 30.0% | |
| AAAAGAAACACTTGCAAAGA+AGG | + | chr4_4:13854409-13854428 | Msa0670930:CDS | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | - | chr4_4:13854496-13854515 | None:intergenic | 30.0% | |
| AAAAGATAACTGACAAACCT+AGG | - | chr4_4:13854737-13854756 | None:intergenic | 30.0% | |
| TGATTTACAACAACAGACTT+AGG | - | chr4_4:13854761-13854780 | None:intergenic | 30.0% | |
| AGAGGATATATAGAAGCTAA+TGG | - | chr4_4:13854881-13854900 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | - | chr4_4:13855199-13855218 | None:intergenic | 30.0% |
| ATGATTTATCATCACTTGTG+TGG | + | chr4_4:13855253-13855272 | Msa0670930:CDS | 30.0% | |
| TTCAGTTACCAAATGTAGTA+TGG | + | chr4_4:13853921-13853940 | Msa0670930:intron | 30.0% | |
| ! | CTTCATGATAGAACTTTTTG+TGG | - | chr4_4:13854207-13854226 | None:intergenic | 30.0% |
| ATCATGAAGTCTATTGAATG+TGG | + | chr4_4:13854218-13854237 | Msa0670930:CDS | 30.0% | |
| TCATGAAGTCTATTGAATGT+GGG | + | chr4_4:13854219-13854238 | Msa0670930:CDS | 30.0% | |
| CATGTTGCAAGAATTAGAAA+CGG | + | chr4_4:13854299-13854318 | Msa0670930:CDS | 30.0% | |
| GGTTCAAGAAAATAGAAAAC+GGG | + | chr4_4:13854364-13854383 | Msa0670930:CDS | 30.0% | |
| GTTCAAGAAAATAGAAAACG+GGG | + | chr4_4:13854365-13854384 | Msa0670930:CDS | 30.0% | |
| AAAAGAAACACTTGCAAAGA+AGG | + | chr4_4:13854409-13854428 | Msa0670930:CDS | 30.0% | |
| AGGAAAGAATCATACTATCA+AGG | - | chr4_4:13854496-13854515 | None:intergenic | 30.0% | |
| AAAAGATAACTGACAAACCT+AGG | - | chr4_4:13854737-13854756 | None:intergenic | 30.0% | |
| TGATTTACAACAACAGACTT+AGG | - | chr4_4:13854761-13854780 | None:intergenic | 30.0% | |
| AGAGGATATATAGAAGCTAA+TGG | - | chr4_4:13854881-13854900 | None:intergenic | 30.0% | |
| !! | AAAAGTGTTGCTCATAATGT+TGG | - | chr4_4:13855199-13855218 | None:intergenic | 30.0% |
| ATGATTTATCATCACTTGTG+TGG | + | chr4_4:13855253-13855272 | Msa0670930:CDS | 30.0% | |
| AATTGCAATAACCTTGAGAC+CGG | - | chr4_4:13853741-13853760 | None:intergenic | 35.0% | |
| ACATCTCCTCAATAGAGTTA+AGG | - | chr4_4:13853781-13853800 | None:intergenic | 35.0% | |
| ATCAGAAGCCATACTACATT+TGG | - | chr4_4:13853932-13853951 | None:intergenic | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | - | chr4_4:13853956-13853975 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | + | chr4_4:13853954-13853973 | Msa0670930:CDS | 35.0% | |
| AAGTCATAAACATCCATGTC+TGG | - | chr4_4:13854015-13854034 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | - | chr4_4:13854041-13854060 | None:intergenic | 35.0% |
| CATGAAGTCTATTGAATGTG+GGG | + | chr4_4:13854220-13854239 | Msa0670930:CDS | 35.0% | |
| TAAGCCTTTGGTTGAAAAAG+AGG | + | chr4_4:13854259-13854278 | Msa0670930:CDS | 35.0% | |
| !!! | TTGACCTCTTTTTCAACCAA+AGG | - | chr4_4:13854266-13854285 | None:intergenic | 35.0% |
| AAAAAGAGGTCAAGATCATG+TGG | + | chr4_4:13854273-13854292 | Msa0670930:CDS | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | - | chr4_4:13854408-13854427 | None:intergenic | 35.0% |
| AAAATGAACCTGTAAATGGC+TGG | - | chr4_4:13854657-13854676 | None:intergenic | 35.0% | |
| TCAACATATGGGAACAAGTT+GGG | - | chr4_4:13855231-13855250 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | - | chr4_4:13855232-13855251 | None:intergenic | 35.0% | |
| AATTGCAATAACCTTGAGAC+CGG | - | chr4_4:13853741-13853760 | None:intergenic | 35.0% | |
| ACATCTCCTCAATAGAGTTA+AGG | - | chr4_4:13853781-13853800 | None:intergenic | 35.0% | |
| ATCAGAAGCCATACTACATT+TGG | - | chr4_4:13853932-13853951 | None:intergenic | 35.0% | |
| CTTTCTTTCCAACATGTTGA+AGG | - | chr4_4:13853956-13853975 | None:intergenic | 35.0% | |
| CTTCAACATGTTGGAAAGAA+AGG | + | chr4_4:13853954-13853973 | Msa0670930:CDS | 35.0% | |
| AAGTCATAAACATCCATGTC+TGG | - | chr4_4:13854015-13854034 | None:intergenic | 35.0% | |
| ! | TGAGTTGTAGGGTAACATTT+TGG | - | chr4_4:13854041-13854060 | None:intergenic | 35.0% |
| CATGAAGTCTATTGAATGTG+GGG | + | chr4_4:13854220-13854239 | Msa0670930:CDS | 35.0% | |
| TAAGCCTTTGGTTGAAAAAG+AGG | + | chr4_4:13854259-13854278 | Msa0670930:CDS | 35.0% | |
| !!! | TTGACCTCTTTTTCAACCAA+AGG | - | chr4_4:13854266-13854285 | None:intergenic | 35.0% |
| AAAAAGAGGTCAAGATCATG+TGG | + | chr4_4:13854273-13854292 | Msa0670930:CDS | 35.0% | |
| ! | CTTTGCAAGTGTTTCTTTTG+AGG | - | chr4_4:13854408-13854427 | None:intergenic | 35.0% |
| AAAATGAACCTGTAAATGGC+TGG | - | chr4_4:13854657-13854676 | None:intergenic | 35.0% | |
| TCAACATATGGGAACAAGTT+GGG | - | chr4_4:13855231-13855250 | None:intergenic | 35.0% | |
| ATCAACATATGGGAACAAGT+TGG | - | chr4_4:13855232-13855251 | None:intergenic | 35.0% | |
| CACTCTCCTTAACTCTATTG+AGG | + | chr4_4:13853772-13853791 | Msa0670930:CDS | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | + | chr4_4:13853945-13853964 | Msa0670930:CDS | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | - | chr4_4:13854052-13854071 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | - | chr4_4:13854053-13854072 | None:intergenic | 40.0% |
| CGAATATTGGACTAAGCCTT+TGG | + | chr4_4:13854247-13854266 | Msa0670930:CDS | 40.0% | |
| TGAAATTGTTGGAAGCTCGA+TGG | + | chr4_4:13854343-13854362 | Msa0670930:CDS | 40.0% | |
| ATTCTCGTGACCAAGACAAA+CGG | - | chr4_4:13854436-13854455 | None:intergenic | 40.0% | |
| ACATATTGCCAGCCATTTAC+AGG | + | chr4_4:13854646-13854665 | Msa0670930:CDS | 40.0% | |
| ACCTAAGTCTATAGTTGCCT+AGG | + | chr4_4:13854717-13854736 | Msa0670930:intron | 40.0% | |
| ACCTAGGCAACTATAGACTT+AGG | - | chr4_4:13854721-13854740 | None:intergenic | 40.0% | |
| AGCAGTGAATAATGCAGTCA+TGG | + | chr4_4:13854811-13854830 | Msa0670930:intron | 40.0% | |
| AGCTCAACAGAAGAGACAAA+AGG | + | chr4_4:13855015-13855034 | Msa0670930:CDS | 40.0% | |
| CAACAGAAGAGACAAAAGGT+AGG | + | chr4_4:13855019-13855038 | Msa0670930:CDS | 40.0% | |
| CAGAATTCAGGAGAAAACTC+TGG | - | chr4_4:13855119-13855138 | None:intergenic | 40.0% | |
| GACATTGTGTAGCAGAATTC+AGG | - | chr4_4:13855131-13855150 | None:intergenic | 40.0% | |
| CACTCTCCTTAACTCTATTG+AGG | + | chr4_4:13853772-13853791 | Msa0670930:CDS | 40.0% | |
| TTCTGATGCCTTCAACATGT+TGG | + | chr4_4:13853945-13853964 | Msa0670930:CDS | 40.0% | |
| ! | GACAGGAATGTTGAGTTGTA+GGG | - | chr4_4:13854052-13854071 | None:intergenic | 40.0% |
| ! | TGACAGGAATGTTGAGTTGT+AGG | - | chr4_4:13854053-13854072 | None:intergenic | 40.0% |
| CGAATATTGGACTAAGCCTT+TGG | + | chr4_4:13854247-13854266 | Msa0670930:CDS | 40.0% | |
| TGAAATTGTTGGAAGCTCGA+TGG | + | chr4_4:13854343-13854362 | Msa0670930:CDS | 40.0% | |
| ATTCTCGTGACCAAGACAAA+CGG | - | chr4_4:13854436-13854455 | None:intergenic | 40.0% | |
| ACATATTGCCAGCCATTTAC+AGG | + | chr4_4:13854646-13854665 | Msa0670930:CDS | 40.0% | |
| ACCTAAGTCTATAGTTGCCT+AGG | + | chr4_4:13854717-13854736 | Msa0670930:intron | 40.0% | |
| ACCTAGGCAACTATAGACTT+AGG | - | chr4_4:13854721-13854740 | None:intergenic | 40.0% | |
| AGCAGTGAATAATGCAGTCA+TGG | + | chr4_4:13854811-13854830 | Msa0670930:intron | 40.0% | |
| AGCTCAACAGAAGAGACAAA+AGG | + | chr4_4:13855015-13855034 | Msa0670930:CDS | 40.0% | |
| CAACAGAAGAGACAAAAGGT+AGG | + | chr4_4:13855019-13855038 | Msa0670930:CDS | 40.0% | |
| CAGAATTCAGGAGAAAACTC+TGG | - | chr4_4:13855119-13855138 | None:intergenic | 40.0% | |
| GACATTGTGTAGCAGAATTC+AGG | - | chr4_4:13855131-13855150 | None:intergenic | 40.0% | |
| TGATGCTCATATGCCAGACA+TGG | + | chr4_4:13853999-13854018 | Msa0670930:CDS | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | + | chr4_4:13854234-13854253 | Msa0670930:CDS | 45.0% | |
| TTCTCGTGACCAAGACAAAC+GGG | - | chr4_4:13854435-13854454 | None:intergenic | 45.0% | |
| CTACGAGCAGTCAATCAACT+AGG | + | chr4_4:13854470-13854489 | Msa0670930:CDS | 45.0% | |
| AGAAGCTACTCACTCAATGC+CGG | + | chr4_4:13855086-13855105 | Msa0670930:CDS | 45.0% | |
| AGAAAACTCTGGTCATGCTC+CGG | - | chr4_4:13855108-13855127 | None:intergenic | 45.0% | |
| ATTGCGATGCACAACGACAT+TGG | + | chr4_4:13855157-13855176 | Msa0670930:CDS | 45.0% | |
| TTGCGATGCACAACGACATT+GGG | + | chr4_4:13855158-13855177 | Msa0670930:CDS | 45.0% | |
| CAACGACATTGGGTGGAAAT+TGG | + | chr4_4:13855168-13855187 | Msa0670930:CDS | 45.0% | |
| TGATGCTCATATGCCAGACA+TGG | + | chr4_4:13853999-13854018 | Msa0670930:CDS | 45.0% | |
| AATGTGGGGCTTGCGAATAT+TGG | + | chr4_4:13854234-13854253 | Msa0670930:CDS | 45.0% | |
| TTCTCGTGACCAAGACAAAC+GGG | - | chr4_4:13854435-13854454 | None:intergenic | 45.0% | |
| CTACGAGCAGTCAATCAACT+AGG | + | chr4_4:13854470-13854489 | Msa0670930:CDS | 45.0% | |
| AGAAGCTACTCACTCAATGC+CGG | + | chr4_4:13855086-13855105 | Msa0670930:CDS | 45.0% | |
| AGAAAACTCTGGTCATGCTC+CGG | - | chr4_4:13855108-13855127 | None:intergenic | 45.0% | |
| ATTGCGATGCACAACGACAT+TGG | + | chr4_4:13855157-13855176 | Msa0670930:CDS | 45.0% | |
| TTGCGATGCACAACGACATT+GGG | + | chr4_4:13855158-13855177 | Msa0670930:CDS | 45.0% | |
| CAACGACATTGGGTGGAAAT+TGG | + | chr4_4:13855168-13855187 | Msa0670930:CDS | 45.0% | |
| CAATAACCTTGAGACCGGCT+GGG | - | chr4_4:13853736-13853755 | None:intergenic | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | + | chr4_4:13854423-13854442 | Msa0670930:CDS | 50.0% | |
| CAATAACCTTGAGACCGGCT+GGG | - | chr4_4:13853736-13853755 | None:intergenic | 50.0% | |
| CAAAGAAGGCCCGTTTGTCT+TGG | + | chr4_4:13854423-13854442 | Msa0670930:CDS | 50.0% | |
| GACAACCCATCATTCCCAGC+CGG | + | chr4_4:13853719-13853738 | Msa0670930:CDS | 55.0% | |
| TGAGACCGGCTGGGAATGAT+GGG | - | chr4_4:13853727-13853746 | None:intergenic | 55.0% | |
| TTGAGACCGGCTGGGAATGA+TGG | - | chr4_4:13853728-13853747 | None:intergenic | 55.0% | |
| ATCATTCCCAGCCGGTCTCA+AGG | + | chr4_4:13853727-13853746 | Msa0670930:CDS | 55.0% | |
| GCAATAACCTTGAGACCGGC+TGG | - | chr4_4:13853737-13853756 | None:intergenic | 55.0% | |
| CGATGCACAACGACATTGGG+TGG | + | chr4_4:13855161-13855180 | Msa0670930:CDS | 55.0% | |
| GACAACCCATCATTCCCAGC+CGG | + | chr4_4:13853719-13853738 | Msa0670930:CDS | 55.0% | |
| TGAGACCGGCTGGGAATGAT+GGG | - | chr4_4:13853727-13853746 | None:intergenic | 55.0% | |
| TTGAGACCGGCTGGGAATGA+TGG | - | chr4_4:13853728-13853747 | None:intergenic | 55.0% | |
| ATCATTCCCAGCCGGTCTCA+AGG | + | chr4_4:13853727-13853746 | Msa0670930:CDS | 55.0% | |
| GCAATAACCTTGAGACCGGC+TGG | - | chr4_4:13853737-13853756 | None:intergenic | 55.0% | |
| CGATGCACAACGACATTGGG+TGG | + | chr4_4:13855161-13855180 | Msa0670930:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 13853704 | 13855278 | 13853704 | ID=Msa0670930;Name=Msa0670930 |
| chr4_4 | mRNA | 13853704 | 13855278 | 13853704 | ID=Msa0670930-mRNA-1;Parent=Msa0670930;Name=Msa0670930-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|5|0|313 |
| chr4_4 | exon | 13853704 | 13853821 | 13853704 | ID=Msa0670930-mRNA-1:exon:4199;Parent=Msa0670930-mRNA-1 |
| chr4_4 | exon | 13853926 | 13854075 | 13853926 | ID=Msa0670930-mRNA-1:exon:4200;Parent=Msa0670930-mRNA-1 |
| chr4_4 | exon | 13854189 | 13854500 | 13854189 | ID=Msa0670930-mRNA-1:exon:4201;Parent=Msa0670930-mRNA-1 |
| chr4_4 | exon | 13854591 | 13854667 | 13854591 | ID=Msa0670930-mRNA-1:exon:4202;Parent=Msa0670930-mRNA-1 |
| chr4_4 | exon | 13854994 | 13855278 | 13854994 | ID=Msa0670930-mRNA-1:exon:4203;Parent=Msa0670930-mRNA-1 |
| chr4_4 | CDS | 13853704 | 13853821 | 13853704 | ID=Msa0670930-mRNA-1:cds;Parent=Msa0670930-mRNA-1 |
| chr4_4 | CDS | 13853926 | 13854075 | 13853926 | ID=Msa0670930-mRNA-1:cds;Parent=Msa0670930-mRNA-1 |
| chr4_4 | CDS | 13854189 | 13854500 | 13854189 | ID=Msa0670930-mRNA-1:cds;Parent=Msa0670930-mRNA-1 |
| chr4_4 | CDS | 13854591 | 13854667 | 13854591 | ID=Msa0670930-mRNA-1:cds;Parent=Msa0670930-mRNA-1 |
| chr4_4 | CDS | 13854994 | 13855278 | 13854994 | ID=Msa0670930-mRNA-1:cds;Parent=Msa0670930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
