AlfalfaGEDB | Msa0673330

M. sativa cultivar zhongmu-4 / Msa0673330

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0673330	KOM27045.1	71.264	87	20	1	18	99	338	424	3.11e-32	129

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0673330	sp\|Q9LW83\|CE101_ARATH	58.974	78	30	1	4	81	538	613	2.38e-24	99.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0673330	A0A0L9T8W1	71.264	87	20	1	18	99	338	424	1.49e-32	129

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0673330	MtrunA17_Chr8g0357691	82.051	78	12	1	4	81	490	565	4.05e-36	129
Msa0673330	MtrunA17_Chr8g0357671	87.500	64	8	0	18	81	68	131	1.19e-35	119
Msa0673330	MtrunA17_Chr8g0357761	85.938	64	9	0	18	81	504	567	1.01e-33	123
Msa0673330	MtrunA17_Chr1g0191101	79.688	64	13	0	18	81	26	89	7.04e-33	110
Msa0673330	MtrunA17_Chr8g0357711	85.938	64	9	0	18	81	501	564	1.12e-32	120
Msa0673330	MtrunA17_Chr8g0358141	83.077	65	11	0	18	82	90	154	3.58e-32	116
Msa0673330	MtrunA17_Chr8g0357831	82.812	64	11	0	18	81	216	279	4.18e-32	117
Msa0673330	MtrunA17_Chr8g0357961	81.250	64	12	0	18	81	508	571	2.01e-31	116
Msa0673330	MtrunA17_Chr8g0357991	81.250	64	12	0	18	81	509	572	2.63e-31	116
Msa0673330	MtrunA17_Chr8g0357651	81.250	64	12	0	18	81	494	557	2.93e-31	115

Showing 1 to 10 of 323 entries

Previous1 2 3 4 5…33Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0673330	AT3G16030.3	57.647	85	34	1	4	88	559	641	2.63e-26	102
Msa0673330	AT3G16030.8	57.647	85	34	1	4	88	559	641	2.63e-26	102
Msa0673330	AT3G16030.5	57.647	85	34	1	4	88	559	641	2.63e-26	102
Msa0673330	AT3G16030.4	58.974	78	30	1	4	81	559	634	2.36e-25	99.8
Msa0673330	AT3G16030.1	58.974	78	30	1	4	81	538	613	2.42e-25	99.8
Msa0673330	AT3G16030.7	58.974	78	30	1	4	81	559	634	2.64e-25	99.4
Msa0673330	AT3G16030.6	58.974	78	30	1	4	81	559	634	2.75e-25	99.4
Msa0673330	AT3G16030.2	58.974	78	30	1	4	81	415	490	2.93e-25	99.4
Msa0673330	AT4G23180.1	66.667	66	22	0	16	81	369	434	4.84e-25	98.6
Msa0673330	AT4G23180.3	66.667	66	22	0	16	81	369	434	7.14e-25	97.8

Showing 1 to 10 of 379 entries

Previous1 2 3 4 5…38Next

Find 10 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTTTCAAAATCTTC+TGG	0.249746	4_4:-19313979	Msa0673330:CDS
ACAAATCTGGTTCAGCTAAT+AGG	0.370720	4_4:-19313901	Msa0673330:CDS
AGTCTGATGTGTATAGCTTT+AGG	0.285487	4_4:-19313213	Msa0673330:CDS
CTGAACCAGATTTGTATGCT+GGG	0.500727	4_4:+19313909	None:intergenic
CTTTCAAAATCTTCTGGACA+AGG	0.532025	4_4:-19313973	Msa0673330:CDS
GCTGAACCAGATTTGTATGC+TGG	0.449192	4_4:+19313908	None:intergenic
GTATATCCCCAACAAAAGCT+TGG	0.541938	4_4:-19313839	Msa0673330:CDS
GTCTGATGTGTATAGCTTTA+GGG	0.287983	4_4:-19313212	Msa0673330:CDS
TAAGCCCCAGCATACAAATC+TGG	0.481530	4_4:-19313914	Msa0673330:CDS
TGAACCAGATTTGTATGCTG+GGG	0.618034	4_4:+19313910	None:intergenic

Showing 1 to 10 of 10 entries

Previous1Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGCAAGAATGTTTATGAAAC+AGG	-	chr4_4:19313784-19313803	Msa0673330:intron	30.0%
TTGAAAGCTTGAACAAACAT+AGG	+	chr4_4:19313855-19313874	None:intergenic	30.0%
AGCAAGAATGTTTATGAAAC+AGG	-	chr4_4:19313784-19313803	Msa0673330:intron	30.0%
TTGAAAGCTTGAACAAACAT+AGG	+	chr4_4:19313855-19313874	None:intergenic	30.0%
CTTTCAAAATCTTCTGGACA+AGG	-	chr4_4:19313216-19313235	Msa0673330:CDS	35.0%
AAGCGCTTTAGCATAATTGA+AGG	-	chr4_4:19313638-19313657	Msa0673330:intron	35.0%
ATAATTGAAGGAATCGCTCA+AGG	-	chr4_4:19313650-19313669	Msa0673330:intron	35.0%
TACTAGGCTTCAAATCTCTA+TGG	+	chr4_4:19313715-19313734	None:intergenic	35.0%
GTTTATGAAACAGGAATCTG+AGG	-	chr4_4:19313793-19313812	Msa0673330:intron	35.0%
CGTAGAAAAAACTCCTTTCA+TGG	+	chr4_4:19313955-19313974	None:intergenic	35.0%

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	19313144	19314067	19313144	ID=Msa0673330;Name=Msa0673330
chr4_4	mRNA	19313144	19314067	19313144	ID=Msa0673330-mRNA-1;Parent=Msa0673330;Name=Msa0673330-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|0\|0\|1\|0\|0\|2\|0\|117
chr4_4	exon	19313824	19314067	19313824	ID=Msa0673330-mRNA-1:exon:5629;Parent=Msa0673330-mRNA-1
chr4_4	exon	19313144	19313250	19313144	ID=Msa0673330-mRNA-1:exon:5628;Parent=Msa0673330-mRNA-1
chr4_4	CDS	19313824	19314067	19313824	ID=Msa0673330-mRNA-1:cds;Parent=Msa0673330-mRNA-1
chr4_4	CDS	19313144	19313250	19313144	ID=Msa0673330-mRNA-1:cds;Parent=Msa0673330-mRNA-1

Gene Sequence	>Msa0673330 ATAAAAGATTTTGAAAGTCTTTTCACAGGTAGATTTTTAACGAAAGATTTTCAAGAAGTAGATGTGAAAAGACTTTCAAAATCTTCTGGACAAGGAATTATTGAATTTAAAAATGAATTAAATCTCATATGTAAGCCCCAGCATACAAATCTGGTTCAGCTAATAGGTCACTGCATTCATGAACAAGAGAGAATATTAATCTATGAGTATATCCCCAACAAAAGCTTGGACTTCTTTTTATTTGGAGTTTTTTCTACGAAGTCTGATGTGTATAGCTTTAGGGCTTTACTCCTTGAACATGATTTTAACAAAAAGTCAGATAGCTTCTTTGTCTTCATTCAAAAAGATTCG
Protein sequence	>Msa0673330 IKDFESLFTGRFLTKDFQEVDVKRLSKSSGQGIIEFKNELNLICKPQHTNLVQLIGHCIHEQERILIYEYIPNKSLDFFLFGVFSTKSDVYSFRALLLEHDFNKKSDSFFVFIQKDS