Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673520 | XP_003605474.1 | 82.500 | 240 | 27 | 1 | 45 | 284 | 5 | 229 | 1.20e-130 | 380 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673520 | sp|Q9FJK3|AGL80_ARATH | 51.923 | 156 | 74 | 1 | 45 | 200 | 5 | 159 | 4.72e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673520 | G7JM29 | 82.500 | 240 | 27 | 1 | 45 | 284 | 5 | 229 | 5.72e-131 | 380 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0673520 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673520 | MtrunA17_Chr4g0014031 | 82.500 | 240 | 27 | 1 | 45 | 284 | 5 | 229 | 1.10e-134 | 380 |
| Msa0673520 | MtrunA17_Chr4g0014131 | 79.012 | 243 | 38 | 1 | 42 | 284 | 2 | 231 | 1.23e-128 | 365 |
| Msa0673520 | MtrunA17_Chr8g0351751 | 61.446 | 249 | 81 | 5 | 45 | 284 | 5 | 247 | 1.19e-96 | 284 |
| Msa0673520 | MtrunA17_Chr4g0014321 | 58.333 | 240 | 87 | 3 | 45 | 284 | 5 | 231 | 1.99e-93 | 275 |
| Msa0673520 | MtrunA17_Chr4g0014321 | 73.913 | 46 | 12 | 0 | 1 | 46 | 180 | 225 | 2.19e-15 | 73.6 |
| Msa0673520 | MtrunA17_Chr4g0013041 | 58.216 | 213 | 59 | 3 | 45 | 257 | 5 | 187 | 1.03e-81 | 245 |
| Msa0673520 | MtrunA17_Chr4g0014121 | 79.355 | 155 | 32 | 0 | 42 | 196 | 30 | 184 | 1.93e-78 | 236 |
| Msa0673520 | MtrunA17_Chr3g0110131 | 47.699 | 239 | 118 | 4 | 45 | 281 | 5 | 238 | 7.55e-61 | 193 |
| Msa0673520 | MtrunA17_Chr3g0107381 | 51.479 | 169 | 74 | 3 | 45 | 212 | 5 | 166 | 3.47e-56 | 180 |
| Msa0673520 | MtrunA17_Chr2g0296831 | 72.034 | 118 | 33 | 0 | 45 | 162 | 5 | 122 | 6.09e-48 | 155 |
| Msa0673520 | MtrunA17_Chr3g0107331 | 44.025 | 159 | 88 | 1 | 45 | 203 | 4 | 161 | 2.20e-42 | 143 |
| Msa0673520 | MtrunA17_Chr5g0432691 | 44.667 | 150 | 82 | 1 | 45 | 194 | 5 | 153 | 6.43e-41 | 139 |
| Msa0673520 | MtrunA17_Chr3g0107351 | 42.675 | 157 | 89 | 1 | 45 | 201 | 4 | 159 | 2.90e-40 | 137 |
| Msa0673520 | MtrunA17_Chr2g0283941 | 41.447 | 152 | 89 | 0 | 45 | 196 | 5 | 156 | 1.30e-38 | 135 |
| Msa0673520 | MtrunA17_Chr3g0107361 | 40.506 | 158 | 93 | 1 | 44 | 201 | 3 | 159 | 6.64e-38 | 131 |
| Msa0673520 | MtrunA17_Chr3g0107341 | 41.139 | 158 | 92 | 1 | 44 | 201 | 3 | 159 | 1.50e-37 | 130 |
| Msa0673520 | MtrunA17_Chr5g0420351 | 44.079 | 152 | 83 | 2 | 45 | 196 | 5 | 154 | 2.08e-36 | 127 |
| Msa0673520 | MtrunA17_Chr3g0107461 | 38.816 | 152 | 93 | 0 | 45 | 196 | 5 | 156 | 1.50e-35 | 125 |
| Msa0673520 | MtrunA17_Chr1g0188681 | 39.355 | 155 | 92 | 2 | 42 | 196 | 2 | 154 | 1.03e-32 | 117 |
| Msa0673520 | MtrunA17_Chr1g0197461 | 38.816 | 152 | 91 | 2 | 45 | 196 | 4 | 153 | 1.36e-32 | 117 |
| Msa0673520 | MtrunA17_Chr1g0197321 | 38.312 | 154 | 94 | 1 | 45 | 198 | 5 | 157 | 7.93e-32 | 115 |
| Msa0673520 | MtrunA17_Chr3g0105791 | 39.416 | 137 | 83 | 0 | 69 | 205 | 1 | 137 | 8.24e-32 | 115 |
| Msa0673520 | MtrunA17_Chr1g0197261 | 38.961 | 154 | 92 | 2 | 45 | 198 | 5 | 156 | 3.32e-31 | 114 |
| Msa0673520 | MtrunA17_Chr4g0031421 | 39.416 | 137 | 83 | 0 | 69 | 205 | 1 | 137 | 7.56e-31 | 112 |
| Msa0673520 | MtrunA17_Chr7g0218151 | 42.105 | 152 | 86 | 2 | 45 | 196 | 5 | 154 | 4.87e-30 | 110 |
| Msa0673520 | MtrunA17_Chr1g0188661 | 42.667 | 150 | 84 | 2 | 45 | 194 | 5 | 152 | 5.19e-30 | 110 |
| Msa0673520 | MtrunA17_Chr1g0193311 | 42.763 | 152 | 85 | 2 | 45 | 196 | 5 | 154 | 1.50e-29 | 109 |
| Msa0673520 | MtrunA17_Chr4g0012761 | 40.789 | 152 | 88 | 2 | 45 | 196 | 5 | 154 | 1.93e-28 | 107 |
| Msa0673520 | MtrunA17_Chr1g0188651 | 41.250 | 160 | 90 | 2 | 42 | 201 | 2 | 157 | 1.27e-27 | 104 |
| Msa0673520 | MtrunA17_Chr3g0106421 | 39.844 | 128 | 77 | 0 | 69 | 196 | 1 | 128 | 4.15e-27 | 105 |
| Msa0673520 | MtrunA17_Chr4g0008701 | 38.562 | 153 | 78 | 2 | 45 | 197 | 8 | 144 | 1.64e-25 | 105 |
| Msa0673520 | MtrunA17_Chr7g0267601 | 37.908 | 153 | 79 | 2 | 45 | 197 | 8 | 144 | 1.82e-25 | 105 |
| Msa0673520 | MtrunA17_Chr3g0128721 | 28.947 | 190 | 124 | 2 | 45 | 234 | 8 | 186 | 1.08e-24 | 103 |
| Msa0673520 | MtrunA17_Chr2g0296861 | 34.194 | 155 | 101 | 1 | 42 | 196 | 2 | 155 | 4.42e-23 | 92.8 |
| Msa0673520 | MtrunA17_Chr2g0296851 | 57.732 | 97 | 40 | 1 | 114 | 209 | 1 | 97 | 6.65e-23 | 90.5 |
| Msa0673520 | MtrunA17_Chr3g0106501 | 31.538 | 130 | 89 | 0 | 69 | 198 | 1 | 130 | 3.69e-18 | 79.3 |
| Msa0673520 | MtrunA17_Chr6g0449861 | 35.780 | 109 | 63 | 4 | 45 | 147 | 13 | 120 | 4.45e-12 | 65.5 |
| Msa0673520 | MtrunA17_Chr6g0457851 | 33.028 | 109 | 66 | 4 | 45 | 147 | 15 | 122 | 5.80e-12 | 65.5 |
| Msa0673520 | MtrunA17_Chr1g0212151 | 33.028 | 109 | 66 | 3 | 45 | 147 | 5 | 112 | 1.36e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0673520 | AT5G48670.1 | 51.923 | 156 | 74 | 1 | 45 | 200 | 5 | 159 | 4.80e-43 | 150 |
| Msa0673520 | AT1G65300.1 | 40.110 | 182 | 95 | 3 | 45 | 226 | 4 | 171 | 7.02e-40 | 140 |
| Msa0673520 | AT1G65330.1 | 39.891 | 183 | 96 | 2 | 45 | 227 | 4 | 172 | 5.13e-38 | 135 |
| Msa0673520 | AT5G26650.1 | 39.634 | 164 | 98 | 1 | 45 | 208 | 3 | 165 | 6.12e-36 | 132 |
| Msa0673520 | AT5G27960.1 | 39.024 | 164 | 99 | 1 | 45 | 208 | 3 | 165 | 4.56e-35 | 129 |
| Msa0673520 | AT5G26630.1 | 46.203 | 158 | 84 | 1 | 45 | 202 | 5 | 161 | 4.80e-35 | 126 |
| Msa0673520 | AT1G31630.1 | 33.889 | 180 | 104 | 3 | 45 | 224 | 4 | 168 | 7.47e-33 | 123 |
| Msa0673520 | AT1G31640.1 | 38.255 | 149 | 90 | 2 | 45 | 193 | 4 | 150 | 2.64e-30 | 119 |
| Msa0673520 | AT5G27810.1 | 53.763 | 93 | 43 | 0 | 69 | 161 | 1 | 93 | 2.02e-29 | 108 |
| Msa0673520 | AT3G05860.2 | 38.356 | 146 | 89 | 1 | 45 | 190 | 5 | 149 | 3.00e-28 | 108 |
| Msa0673520 | AT3G05860.3 | 38.356 | 146 | 89 | 1 | 45 | 190 | 5 | 149 | 8.25e-28 | 108 |
| Msa0673520 | AT3G05860.1 | 38.356 | 146 | 89 | 1 | 45 | 190 | 5 | 149 | 9.72e-28 | 108 |
| Msa0673520 | AT2G28700.1 | 35.583 | 163 | 100 | 2 | 45 | 205 | 5 | 164 | 2.73e-26 | 105 |
| Msa0673520 | AT5G26580.1 | 35.099 | 151 | 83 | 2 | 45 | 195 | 5 | 140 | 6.77e-25 | 102 |
| Msa0673520 | AT1G22590.2 | 29.932 | 147 | 99 | 1 | 50 | 196 | 10 | 152 | 5.09e-22 | 90.5 |
| Msa0673520 | AT5G06500.1 | 34.000 | 150 | 97 | 2 | 45 | 194 | 5 | 152 | 3.96e-18 | 82.0 |
| Msa0673520 | AT2G40210.1 | 38.168 | 131 | 79 | 2 | 45 | 174 | 5 | 134 | 3.51e-16 | 78.2 |
| Msa0673520 | AT5G58890.1 | 38.583 | 127 | 67 | 5 | 46 | 163 | 6 | 130 | 6.81e-16 | 76.6 |
| Msa0673520 | AT5G55690.1 | 42.466 | 73 | 35 | 2 | 46 | 111 | 6 | 78 | 1.04e-11 | 64.3 |
| Msa0673520 | AT5G55690.2 | 42.466 | 73 | 35 | 2 | 46 | 111 | 6 | 78 | 1.04e-11 | 64.3 |
Find 70 sgRNAs with CRISPR-Local
Find 312 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAACAAAGAAAAGAAAAT+AGG | 0.231520 | 4_4:+19908066 | Msa0673520:CDS |
| GAGTGAAGAAATGGCAATTA+TGG | 0.233693 | 4_4:+19908328 | Msa0673520:CDS |
| CCATTTGGTGAGGTCAATTC+TGG | 0.235784 | 4_4:+19908449 | Msa0673520:CDS |
| GTGAGGTCAATTCTGGAGTT+TGG | 0.330469 | 4_4:+19908456 | Msa0673520:CDS |
| AACGAAGGGTCTATTGAAAA+AGG | 0.335070 | 4_4:+19907833 | Msa0673520:CDS |
| ATGAGCCTCAACCTGAGATT+TGG | 0.345571 | 4_4:+19907913 | Msa0673520:CDS |
| ATGTTGTCGCCATTATTCAT+AGG | 0.374511 | 4_4:-19903192 | None:intergenic |
| ATAATGTCATCATCATTAAT+AGG | 0.375800 | 4_4:-19908371 | None:intergenic |
| TCGCCATTTCGAGTTGGACT+TGG | 0.402057 | 4_4:-19908271 | None:intergenic |
| TATGCAAAGTCAATTATTGA+TGG | 0.408286 | 4_4:+19908391 | Msa0673520:CDS |
| ATCTCAGGTTGAGGCTCATA+AGG | 0.418788 | 4_4:-19907909 | None:intergenic |
| GAAACAAAGAAAAGAAAATA+GGG | 0.419680 | 4_4:+19908067 | Msa0673520:CDS |
| AGTGAAGAAATGGCAATTAT+GGG | 0.424565 | 4_4:+19908329 | Msa0673520:CDS |
| GTTGATTGACCACAATTTGA+AGG | 0.436294 | 4_4:+19908184 | Msa0673520:CDS |
| GGTCTGATTTACTACCTTGA+AGG | 0.436579 | 4_4:+19908477 | Msa0673520:CDS |
| AGGATGGGTTCTGGCAATGC+TGG | 0.443129 | 4_4:+19903165 | Msa0673520:CDS |
| GAAGATGAGTCGGTGCCCTT+TGG | 0.443340 | 4_4:+19903255 | Msa0673520:CDS |
| TAAATGGCAAGGATGGGTTC+TGG | 0.450639 | 4_4:+19903156 | None:intergenic |
| AAACCAAGTCCAACTCGAAA+TGG | 0.452175 | 4_4:+19908268 | Msa0673520:CDS |
| AGCATCTAGGAGTGAAGAAA+TGG | 0.457574 | 4_4:+19908319 | Msa0673520:CDS |
| TAATGAATAAATGGCAAGGA+TGG | 0.466004 | 4_4:+19903149 | None:intergenic |
| TTATGGGTCATGGCCATGTT+GGG | 0.476409 | 4_4:+19908345 | Msa0673520:CDS |
| CTTGACACAAAGGGTTCTGA+AGG | 0.478789 | 4_4:+19908028 | Msa0673520:CDS |
| CTCATAAGGTCCATACACTA+TGG | 0.479698 | 4_4:-19907895 | None:intergenic |
| TCAATTATTGATGGACTCAA+TGG | 0.482426 | 4_4:+19908400 | Msa0673520:CDS |
| GCTGGAATGCCTATGAATAA+TGG | 0.487571 | 4_4:+19903183 | Msa0673520:CDS |
| TCTGGTAAAGGCCAAATCTC+AGG | 0.493519 | 4_4:-19907924 | None:intergenic |
| CCAGAATTGACCTCACCAAA+TGG | 0.504570 | 4_4:-19908449 | None:intergenic |
| TTAGTAGACGTTTGCAAGCA+TGG | 0.508712 | 4_4:+19908210 | Msa0673520:CDS |
| TGGATATGAGTTATCTTGCT+TGG | 0.509186 | 4_4:+19908162 | Msa0673520:CDS |
| AGAGACTTTCTTGACACAAA+GGG | 0.517022 | 4_4:+19908019 | Msa0673520:CDS |
| TGCAACATCATTGACAATGA+AGG | 0.517037 | 4_4:-19907787 | None:intergenic |
| ATGAGTCAATGTCTTAATGA+AGG | 0.517500 | 4_4:+19908110 | Msa0673520:CDS |
| CAATGATCAAAATCAAATCA+TGG | 0.521352 | 4_4:+19908238 | Msa0673520:CDS |
| CACCACTTCTAGCAGCATCT+AGG | 0.525777 | 4_4:+19908306 | Msa0673520:CDS |
| TTTGTGTCAAGAAAGTCTCT+TGG | 0.525855 | 4_4:-19908016 | None:intergenic |
| TAGTAGACGTTTGCAAGCAT+GGG | 0.527105 | 4_4:+19908211 | Msa0673520:CDS |
| CTAGGATCGACCTCGCCAAA+GGG | 0.529567 | 4_4:-19903270 | None:intergenic |
| GAAGCCTGTGCCATAGTGTA+TGG | 0.533456 | 4_4:+19907885 | Msa0673520:CDS |
| GATTTGGCCTTTACCAGAGG+GGG | 0.545213 | 4_4:+19907929 | Msa0673520:CDS |
| GAAATGGCAATTATGGGTCA+TGG | 0.549964 | 4_4:+19908335 | Msa0673520:CDS |
| ACAGGCTTCAATGCCACATA+GGG | 0.562298 | 4_4:-19907871 | None:intergenic |
| GAGATTTGGCCTTTACCAGA+GGG | 0.564008 | 4_4:+19907927 | Msa0673520:CDS |
| ATTATGGGTCATGGCCATGT+TGG | 0.565284 | 4_4:+19908344 | Msa0673520:CDS |
| GTGCACGAGACAGTGCCATT+TGG | 0.566982 | 4_4:+19908434 | Msa0673520:CDS |
| TCTAGGATCGACCTCGCCAA+AGG | 0.568977 | 4_4:-19903271 | None:intergenic |
| CTCCTAGATGCTGCTAGAAG+TGG | 0.571630 | 4_4:-19908308 | None:intergenic |
| TACTAACGTCCTTCAAATTG+TGG | 0.573371 | 4_4:-19908193 | None:intergenic |
| CACAGGCTTCAATGCCACAT+AGG | 0.577126 | 4_4:-19907872 | None:intergenic |
| TTGTTGTCGCCATTTCGAGT+TGG | 0.584691 | 4_4:-19908277 | None:intergenic |
| AATGAATAAATGGCAAGGAT+GGG | 0.586788 | 4_4:+19903150 | None:intergenic |
| CATTAATAGGTATCCCAACA+TGG | 0.589301 | 4_4:-19908358 | None:intergenic |
| TCATTGTCAATGATGTTGCA+AGG | 0.595963 | 4_4:+19907790 | Msa0673520:CDS |
| TCAGTAATGAATAAATGGCA+AGG | 0.596659 | 4_4:+19903145 | None:intergenic |
| TGAGTCGGTGCCCTTTGGCG+AGG | 0.603481 | 4_4:+19903260 | Msa0673520:CDS |
| AAAGGCCAAATCTCAGGTTG+AGG | 0.605277 | 4_4:-19907918 | None:intergenic |
| CTAGATGCTGCTAGAAGTGG+TGG | 0.605478 | 4_4:-19908305 | None:intergenic |
| TTGATGGACTCAATGGTGGC+TGG | 0.607204 | 4_4:+19908407 | Msa0673520:CDS |
| AAGAGACTTTCTTGACACAA+AGG | 0.607804 | 4_4:+19908018 | Msa0673520:CDS |
| ATCATACAAGAAAAGAACGA+AGG | 0.618898 | 4_4:+19907818 | Msa0673520:CDS |
| TCATACAAGAAAAGAACGAA+GGG | 0.620354 | 4_4:+19907819 | Msa0673520:CDS |
| CGAGACAGTGCCATTTGGTG+AGG | 0.623614 | 4_4:+19908439 | Msa0673520:CDS |
| TGAGATTTGGCCTTTACCAG+AGG | 0.627166 | 4_4:+19907926 | Msa0673520:CDS |
| GATGCTGCTAGAAGTGGTGG+TGG | 0.633563 | 4_4:-19908302 | None:intergenic |
| AGGTCCATACACTATGGCAC+AGG | 0.635258 | 4_4:-19907889 | None:intergenic |
| AGATTTGGCCTTTACCAGAG+GGG | 0.656413 | 4_4:+19907928 | Msa0673520:CDS |
| GCTGAACTTAGCACCCTATG+TGG | 0.657570 | 4_4:+19907858 | Msa0673520:CDS |
| GAATAGTAATGAAGATGAGT+CGG | 0.662317 | 4_4:+19903245 | Msa0673520:CDS |
| ATTATTGATGGACTCAATGG+TGG | 0.666274 | 4_4:+19908403 | Msa0673520:CDS |
| GCATGACAATATGTCAACAA+TGG | 0.671130 | 4_4:+19908142 | Msa0673520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAATATTTTTTTTTTTT+GGG | + | chr4_4:19903396-19903415 | Msa0673520:intron | 0.0% |
| !!! | CTTATTTTATAGTTAAATAT+AGG | - | chr4_4:19906325-19906344 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAACATTTTCTAT+TGG | + | chr4_4:19906383-19906402 | Msa0673520:intron | 10.0% |
| !!! | TTTTGGTAAAAAAAAAAAAA+AGG | - | chr4_4:19906487-19906506 | None:intergenic | 10.0% |
| !!! | TTTGTAATTTTATTTTGTTT+TGG | - | chr4_4:19906504-19906523 | None:intergenic | 10.0% |
| !! | TAATAAAATCAATTATGATT+AGG | + | chr4_4:19906528-19906547 | Msa0673520:intron | 10.0% |
| !! | AAATTATTATATCTGAAAAT+TGG | + | chr4_4:19906621-19906640 | Msa0673520:intron | 10.0% |
| !!! | TTTGTAATTTTATTTTGTTT+TGG | - | chr4_4:19906504-19906523 | None:intergenic | 10.0% |
| !! | TAATAAAATCAATTATGATT+AGG | + | chr4_4:19906528-19906547 | Msa0673520:intron | 10.0% |
| !! | AAATTATTATATCTGAAAAT+TGG | + | chr4_4:19906621-19906640 | Msa0673520:intron | 10.0% |
| !! | GAAATATTAATAGTATAATA+TGG | - | chr4_4:19906969-19906988 | None:intergenic | 10.0% |
| !!! | TATATGATATTTAAAACTAA+CGG | + | chr4_4:19907016-19907035 | Msa0673520:intron | 10.0% |
| !!! | TTAGTTATTCTTTTTTTAAA+AGG | - | chr4_4:19907044-19907063 | None:intergenic | 10.0% |
| !! | TTTAAAAAAAGAATAACTAA+CGG | + | chr4_4:19907044-19907063 | Msa0673520:intron | 10.0% |
| !!! | ATGTATTTTTTTTTTATGAA+AGG | + | chr4_4:19907544-19907563 | Msa0673520:intron | 10.0% |
| !!! | TCTTTTTTCCATTTTTATTT+TGG | + | chr4_4:19904390-19904409 | Msa0673520:intron | 15.0% |
| !!! | AAAAGATTTTCTTTAAGATT+GGG | + | chr4_4:19904508-19904527 | Msa0673520:intron | 15.0% |
| !! | AAAAAAAAAAAAAGGACTAA+TGG | - | chr4_4:19906479-19906498 | None:intergenic | 15.0% |
| !!! | TATGGTATAATATATTTTTC+AGG | - | chr4_4:19906931-19906950 | None:intergenic | 15.0% |
| !! | ATAGTATAATATGGTATAAA+AGG | - | chr4_4:19906960-19906979 | None:intergenic | 15.0% |
| !!! | AAAATCTTATTGTTTTTGAA+CGG | - | chr4_4:19907136-19907155 | None:intergenic | 15.0% |
| !!! | CAATTTATAAATTTAGAGTA+TGG | - | chr4_4:19907211-19907230 | None:intergenic | 15.0% |
| !! | TAAAAAAGCAATTGTATTTA+TGG | - | chr4_4:19907238-19907257 | None:intergenic | 15.0% |
| !! | AATTTCTTGATAAAATCTAA+GGG | - | chr4_4:19907458-19907477 | None:intergenic | 15.0% |
| !! | TAATTTCTTGATAAAATCTA+AGG | - | chr4_4:19907459-19907478 | None:intergenic | 15.0% |
| !! | ATAAATAAGATTGAAATCTA+AGG | + | chr4_4:19907570-19907589 | Msa0673520:intron | 15.0% |
| !! | TAAATAAGATTGAAATCTAA+GGG | + | chr4_4:19907571-19907590 | Msa0673520:intron | 15.0% |
| !!! | ATTGAAAGTCAATCTTTTAT+GGG | + | chr4_4:19903213-19903232 | Msa0673520:CDS | 20.0% |
| !! | CAAATACATGAATTCATTTA+AGG | - | chr4_4:19903315-19903334 | None:intergenic | 20.0% |
| !!! | AAAGAAAATCTTTTGAGTAT+TGG | - | chr4_4:19904502-19904521 | None:intergenic | 20.0% |
| !!! | CAAAAGATTTTCTTTAAGAT+TGG | + | chr4_4:19904507-19904526 | Msa0673520:intron | 20.0% |
| !! | TTCAATCAAAGCTTAAATTA+CGG | - | chr4_4:19905048-19905067 | None:intergenic | 20.0% |
| !!! | TAATTTAAGCTTTGATTGAA+AGG | + | chr4_4:19905048-19905067 | Msa0673520:intron | 20.0% |
| !!! | CTTGGTATAATATTCTTTTA+CGG | + | chr4_4:19905294-19905313 | Msa0673520:intron | 20.0% |
| !! | AAATAAACATAAAGATGCAA+AGG | - | chr4_4:19905503-19905522 | None:intergenic | 20.0% |
| !! | TAGAAATTGTGTAGAATATA+AGG | + | chr4_4:19905727-19905746 | Msa0673520:intron | 20.0% |
| !! | GCACATAAATATATTCTAAT+AGG | - | chr4_4:19907081-19907100 | None:intergenic | 20.0% |
| !! | AGAAACAAAGAAAAGAAAAT+AGG | + | chr4_4:19908066-19908085 | Msa0673520:CDS | 20.0% |
| !! | GAAACAAAGAAAAGAAAATA+GGG | + | chr4_4:19908067-19908086 | Msa0673520:CDS | 20.0% |
| !! | ATAATGTCATCATCATTAAT+AGG | - | chr4_4:19908374-19908393 | None:intergenic | 20.0% |
| !! | CATTGAAAGTCAATCTTTTA+TGG | + | chr4_4:19903212-19903231 | Msa0673520:CDS | 25.0% |
| !! | TTCATTTAAGGTAGTAGATT+TGG | - | chr4_4:19903303-19903322 | None:intergenic | 25.0% |
| !! | AAACTATTCTAGAGAAATCT+AGG | + | chr4_4:19903785-19903804 | Msa0673520:intron | 25.0% |
| !! | CATTTTATCAATCAAGGATT+TGG | - | chr4_4:19903959-19903978 | None:intergenic | 25.0% |
| !! | GATCAACATTTTATCAATCA+AGG | - | chr4_4:19903965-19903984 | None:intergenic | 25.0% |
| ! | GACTAAGAAAATCATTGAAT+GGG | - | chr4_4:19904024-19904043 | None:intergenic | 25.0% |
| ! | AGACTAAGAAAATCATTGAA+TGG | - | chr4_4:19904025-19904044 | None:intergenic | 25.0% |
| ! | TATATATGAAACTTGCAACT+TGG | - | chr4_4:19904125-19904144 | None:intergenic | 25.0% |
| !!! | TCACTGTTTGATTGTTTTAT+TGG | + | chr4_4:19904247-19904266 | Msa0673520:intron | 25.0% |
| !!! | GTTTGATTGTTTTATTGGAA+TGG | + | chr4_4:19904252-19904271 | Msa0673520:intron | 25.0% |
| !! | GTAGTATATTTGAAGCTTAT+TGG | + | chr4_4:19904355-19904374 | Msa0673520:intron | 25.0% |
| ! | AGAGATAGCCAAAATAAAAA+TGG | - | chr4_4:19904401-19904420 | None:intergenic | 25.0% |
| ! | TATATGACAACAATCACAAA+AGG | - | chr4_4:19904426-19904445 | None:intergenic | 25.0% |
| ! | GGATATATTATACACTTTGA+AGG | - | chr4_4:19904463-19904482 | None:intergenic | 25.0% |
| ! | TGAATTAAGTAATTGGTACT+TGG | - | chr4_4:19904710-19904729 | None:intergenic | 25.0% |
| ! | CCAATGATGAATTAAGTAAT+TGG | - | chr4_4:19904717-19904736 | None:intergenic | 25.0% |
| ! | CCAATTACTTAATTCATCAT+TGG | + | chr4_4:19904714-19904733 | Msa0673520:intron | 25.0% |
| ! | TTAATTCATCATTGGAATCT+TGG | + | chr4_4:19904722-19904741 | Msa0673520:intron | 25.0% |
| ! | TAATTCATCATTGGAATCTT+GGG | + | chr4_4:19904723-19904742 | Msa0673520:intron | 25.0% |
| ! | AAATTACGGTCTCAAAATAA+AGG | - | chr4_4:19905034-19905053 | None:intergenic | 25.0% |
| ! | TTGTCAGTGATAGAATTAAT+AGG | - | chr4_4:19905133-19905152 | None:intergenic | 25.0% |
| ! | AGTATCTTTCCAAGAATAAT+GGG | - | chr4_4:19905448-19905467 | None:intergenic | 25.0% |
| !! | TTTTTGCTCTCAAGATTTAT+GGG | - | chr4_4:19905602-19905621 | None:intergenic | 25.0% |
| !!! | TTTTTTGCTCTCAAGATTTA+TGG | - | chr4_4:19905603-19905622 | None:intergenic | 25.0% |
| !! | ATGGTGAAAACTATGATTTT+TGG | - | chr4_4:19905645-19905664 | None:intergenic | 25.0% |
| ! | AAATTGTGTAGAATATAAGG+AGG | + | chr4_4:19905730-19905749 | Msa0673520:intron | 25.0% |
| ! | AATTGTGTAGAATATAAGGA+GGG | + | chr4_4:19905731-19905750 | Msa0673520:intron | 25.0% |
| !! | AAACTATTCTAGAGAAATCT+AGG | + | chr4_4:19903785-19903804 | Msa0673520:intron | 25.0% |
| !!! | ATAGGTGCATTAACTTTTTT+TGG | - | chr4_4:19906432-19906451 | None:intergenic | 25.0% |
| ! | AATAATTTAAATGACACAGC+TGG | - | chr4_4:19907186-19907205 | None:intergenic | 25.0% |
| !! | TTCGATTTCTAGATGATATT+TGG | - | chr4_4:19907336-19907355 | None:intergenic | 25.0% |
| ! | AGAAAATTTCAAGAATGACA+TGG | + | chr4_4:19907421-19907440 | Msa0673520:intron | 25.0% |
| !!! | GTCTCGTTAATTTTTGTTTA+TGG | - | chr4_4:19907662-19907681 | None:intergenic | 25.0% |
| !! | AAAAACAAAGTTGATTGTTG+TGG | - | chr4_4:19907705-19907724 | None:intergenic | 25.0% |
| ! | CAATGATCAAAATCAAATCA+TGG | + | chr4_4:19908238-19908257 | Msa0673520:CDS | 25.0% |
| ! | TATGCAAAGTCAATTATTGA+TGG | + | chr4_4:19908391-19908410 | Msa0673520:CDS | 25.0% |
| GAATAGTAATGAAGATGAGT+CGG | + | chr4_4:19903245-19903264 | Msa0673520:CDS | 30.0% | |
| TAGGTTTCTGTTAGTAGTTT+AGG | + | chr4_4:19903506-19903525 | Msa0673520:intron | 30.0% | |
| ATATAGTAGTAAGTAGTGTG+AGG | + | chr4_4:19903588-19903607 | Msa0673520:intron | 30.0% | |
| ACAATCCAATCAATCCAATT+TGG | - | chr4_4:19903644-19903663 | None:intergenic | 30.0% | |
| ATGACATCCACACTATAAAT+AGG | - | chr4_4:19903688-19903707 | None:intergenic | 30.0% | |
| !!! | GTTTTTTGTTGAGAATGTGA+AGG | + | chr4_4:19904187-19904206 | Msa0673520:intron | 30.0% |
| ! | ATGAAAATGCAAGTTGGAAT+AGG | - | chr4_4:19904309-19904328 | None:intergenic | 30.0% |
| !! | AAGTTGATGAAAATGCAAGT+TGG | - | chr4_4:19904315-19904334 | None:intergenic | 30.0% |
| TTCATCAACTTCAACTTTGA+AGG | + | chr4_4:19904324-19904343 | Msa0673520:intron | 30.0% | |
| !! | TTTGAGTATTGGTCAAATGT+TGG | - | chr4_4:19904491-19904510 | None:intergenic | 30.0% |
| TGATTACTCTGTCAAAGTAA+AGG | - | chr4_4:19904635-19904654 | None:intergenic | 30.0% | |
| TTTGGAGGAAACAAGAAAAA+TGG | - | chr4_4:19905010-19905029 | None:intergenic | 30.0% | |
| TCTCAAAATAAAGGATTTGG+AGG | - | chr4_4:19905025-19905044 | None:intergenic | 30.0% | |
| CTTATGAGCAAAGATTGAAT+AGG | - | chr4_4:19905099-19905118 | None:intergenic | 30.0% | |
| ACAATTGAATCATACTTACG+AGG | + | chr4_4:19905187-19905206 | Msa0673520:intron | 30.0% | |
| TGAGTCAAATGAAAACTTAC+GGG | - | chr4_4:19905261-19905280 | None:intergenic | 30.0% | |
| GTGAGTCAAATGAAAACTTA+CGG | - | chr4_4:19905262-19905281 | None:intergenic | 30.0% | |
| !! | ACTCACTAGTTCTTTTATCT+TGG | + | chr4_4:19905276-19905295 | Msa0673520:intron | 30.0% |
| ! | TCTTAGAGTCTGAAGTTTAA+TGG | + | chr4_4:19905354-19905373 | Msa0673520:intron | 30.0% |
| CAGTATCTTTCCAAGAATAA+TGG | - | chr4_4:19905449-19905468 | None:intergenic | 30.0% | |
| ! | ATCATAGTTTTCACCATTGA+AGG | + | chr4_4:19905648-19905667 | Msa0673520:intron | 30.0% |
| ATATAGTAGTAAGTAGTGTG+AGG | + | chr4_4:19903588-19903607 | Msa0673520:intron | 30.0% | |
| ACAATCCAATCAATCCAATT+TGG | - | chr4_4:19903644-19903663 | None:intergenic | 30.0% | |
| ATGACATCCACACTATAAAT+AGG | - | chr4_4:19903688-19903707 | None:intergenic | 30.0% | |
| !! | TAGAAAAGAGTATTGATGTG+TGG | + | chr4_4:19906260-19906279 | Msa0673520:intron | 30.0% |
| TTTGCATTAACCATTTGTCT+TGG | + | chr4_4:19906296-19906315 | Msa0673520:intron | 30.0% | |
| !!! | AACTTTTTTTGGTAGTGGAT+TGG | - | chr4_4:19906421-19906440 | None:intergenic | 30.0% |
| !!! | GCATTAACTTTTTTTGGTAG+TGG | - | chr4_4:19906426-19906445 | None:intergenic | 30.0% |
| !!! | TTGCTTTTTTACATCCTACT+TGG | + | chr4_4:19907247-19907266 | Msa0673520:intron | 30.0% |
| !!! | TTTTTTACATCCTACTTGGA+TGG | + | chr4_4:19907251-19907270 | Msa0673520:intron | 30.0% |
| TATGATGACTAATATCCAAC+TGG | - | chr4_4:19907311-19907330 | None:intergenic | 30.0% | |
| ATAGACCAATTTGATATGCA+TGG | - | chr4_4:19907359-19907378 | None:intergenic | 30.0% | |
| AGAAAGATTCAAGAATGACA+TGG | - | chr4_4:19907608-19907627 | None:intergenic | 30.0% | |
| ATCATACAAGAAAAGAACGA+AGG | + | chr4_4:19907818-19907837 | Msa0673520:CDS | 30.0% | |
| TCATACAAGAAAAGAACGAA+GGG | + | chr4_4:19907819-19907838 | Msa0673520:CDS | 30.0% | |
| ATGAGTCAATGTCTTAATGA+AGG | + | chr4_4:19908110-19908129 | Msa0673520:CDS | 30.0% | |
| AGTGAAGAAATGGCAATTAT+GGG | + | chr4_4:19908329-19908348 | Msa0673520:CDS | 30.0% | |
| !! | TCAATTATTGATGGACTCAA+TGG | + | chr4_4:19908400-19908419 | Msa0673520:CDS | 30.0% |
| ATGTTGTCGCCATTATTCAT+AGG | - | chr4_4:19903195-19903214 | None:intergenic | 35.0% | |
| AGTAGATTTGGCAAAACTCT+AGG | - | chr4_4:19903291-19903310 | None:intergenic | 35.0% | |
| TATGATAGATCCACCTCAAA+GGG | - | chr4_4:19903347-19903366 | None:intergenic | 35.0% | |
| TTATGATAGATCCACCTCAA+AGG | - | chr4_4:19903348-19903367 | None:intergenic | 35.0% | |
| TGATGACTAAATCACGCATA+TGG | - | chr4_4:19903477-19903496 | None:intergenic | 35.0% | |
| TATGCGTGATTTAGTCATCA+TGG | + | chr4_4:19903477-19903496 | Msa0673520:intron | 35.0% | |
| ! | GTGATAGTTAAGAGTGTAGT+TGG | + | chr4_4:19903534-19903553 | Msa0673520:intron | 35.0% |
| TATTGTATTGCCCTCCAAAT+TGG | + | chr4_4:19903627-19903646 | Msa0673520:intron | 35.0% | |
| TCCAATCAATCCAATTTGGA+GGG | - | chr4_4:19903640-19903659 | None:intergenic | 35.0% | |
| ATCCAATCAATCCAATTTGG+AGG | - | chr4_4:19903641-19903660 | None:intergenic | 35.0% | |
| ATGCTTGCCTATTTATAGTG+TGG | + | chr4_4:19903678-19903697 | Msa0673520:intron | 35.0% | |
| AGTTACCGAAATATGCATCA+AGG | - | chr4_4:19903899-19903918 | None:intergenic | 35.0% | |
| ATAATAAACATCCTCGAGCA+TGG | - | chr4_4:19904000-19904019 | None:intergenic | 35.0% | |
| AAACCAGAATTATGTGCCAA+AGG | - | chr4_4:19904067-19904086 | None:intergenic | 35.0% | |
| AAATCTACTCCAACAAGAGT+GGG | - | chr4_4:19904160-19904179 | None:intergenic | 35.0% | |
| AAAATCTACTCCAACAAGAG+TGG | - | chr4_4:19904161-19904180 | None:intergenic | 35.0% | |
| ! | TTTTGTTGAGAATGTGAAGG+TGG | + | chr4_4:19904190-19904209 | Msa0673520:intron | 35.0% |
| AGCTATAGAAGAAGCAAATG+AGG | - | chr4_4:19904227-19904246 | None:intergenic | 35.0% | |
| ATTGGTCAAATGTTGGAGAA+AGG | - | chr4_4:19904484-19904503 | None:intergenic | 35.0% | |
| TAAGACGTCTTTGATAAACC+TGG | + | chr4_4:19904537-19904556 | Msa0673520:intron | 35.0% | |
| !! | CAAAGATGAGAGTATCTTCA+AGG | - | chr4_4:19904662-19904681 | None:intergenic | 35.0% |
| CTTGAAGATACTCTCATCTT+TGG | + | chr4_4:19904660-19904679 | Msa0673520:intron | 35.0% | |
| AGTAATTGGTACTTGGATAG+CGG | - | chr4_4:19904703-19904722 | None:intergenic | 35.0% | |
| TGTGGATACTGCAAGAAATT+TGG | - | chr4_4:19904859-19904878 | None:intergenic | 35.0% | |
| ACAATATTTCTCGGCATGAT+TGG | + | chr4_4:19904900-19904919 | Msa0673520:intron | 35.0% | |
| CGGTCTCAAAATAAAGGATT+TGG | - | chr4_4:19905028-19905047 | None:intergenic | 35.0% | |
| GAGTCAAATGAAAACTTACG+GGG | - | chr4_4:19905260-19905279 | None:intergenic | 35.0% | |
| ATTGTTCTTTCTGCAACAAG+CGG | - | chr4_4:19905479-19905498 | None:intergenic | 35.0% | |
| AGCTCAGAAAAAAGAGTTGA+AGG | - | chr4_4:19905527-19905546 | None:intergenic | 35.0% | |
| ATTGAGAGTTGAAATCTCTG+TGG | + | chr4_4:19905549-19905568 | Msa0673520:intron | 35.0% | |
| TTGAGAGTTGAAATCTCTGT+GGG | + | chr4_4:19905550-19905569 | Msa0673520:intron | 35.0% | |
| TTATGGGAGATTGTAGATGA+AGG | - | chr4_4:19905586-19905605 | None:intergenic | 35.0% | |
| ! | TAGTTTTCACCATTGAAGGT+AGG | + | chr4_4:19905652-19905671 | Msa0673520:intron | 35.0% |
| ! | AGTTTTCACCATTGAAGGTA+GGG | + | chr4_4:19905653-19905672 | Msa0673520:intron | 35.0% |
| ATGATTATCCCTACCTTCAA+TGG | - | chr4_4:19905664-19905683 | None:intergenic | 35.0% | |
| GTAGGGATAATCATAGATGA+TGG | + | chr4_4:19905670-19905689 | Msa0673520:intron | 35.0% | |
| TGGTTGAATGTTATTAGCCA+TGG | + | chr4_4:19905690-19905709 | Msa0673520:intron | 35.0% | |
| AATGTTATTAGCCATGGCTT+AGG | + | chr4_4:19905696-19905715 | Msa0673520:intron | 35.0% | |
| ATGTTATTAGCCATGGCTTA+GGG | + | chr4_4:19905697-19905716 | Msa0673520:intron | 35.0% | |
| TGTAGAATATAAGGAGGGTT+TGG | + | chr4_4:19905736-19905755 | Msa0673520:intron | 35.0% | |
| GCTACGTTCGATCATATATT+GGG | - | chr4_4:19905791-19905810 | None:intergenic | 35.0% | |
| AGCTACGTTCGATCATATAT+TGG | - | chr4_4:19905792-19905811 | None:intergenic | 35.0% | |
| GATACCACTGTTAGTAGTTT+AGG | + | chr4_4:19905814-19905833 | Msa0673520:intron | 35.0% | |
| ACTACCTAAACTACTAACAG+TGG | - | chr4_4:19903513-19903532 | None:intergenic | 35.0% | |
| ! | GTGATAGTTAAGAGTGTAGT+TGG | + | chr4_4:19903534-19903553 | Msa0673520:intron | 35.0% |
| TATTGTATTGCCCTCCAAAT+TGG | + | chr4_4:19903627-19903646 | Msa0673520:intron | 35.0% | |
| TCCAATCAATCCAATTTGGA+GGG | - | chr4_4:19903640-19903659 | None:intergenic | 35.0% | |
| ATCCAATCAATCCAATTTGG+AGG | - | chr4_4:19903641-19903660 | None:intergenic | 35.0% | |
| ATGCTTGCCTATTTATAGTG+TGG | + | chr4_4:19903678-19903697 | Msa0673520:intron | 35.0% | |
| ATATAGGTAGCCAAGACAAA+TGG | - | chr4_4:19906309-19906328 | None:intergenic | 35.0% | |
| AAAGGACTAATGGCCTATAA+TGG | - | chr4_4:19906469-19906488 | None:intergenic | 35.0% | |
| TGGTATAAAAGGAGCTGTTA+TGG | - | chr4_4:19906949-19906968 | None:intergenic | 35.0% | |
| TATTGACATACCATCCAAGT+AGG | - | chr4_4:19907264-19907283 | None:intergenic | 35.0% | |
| TCGAACCATGCATATCAAAT+TGG | + | chr4_4:19907351-19907370 | Msa0673520:intron | 35.0% | |
| TAGCCAATAAAATCTCAACC+TGG | + | chr4_4:19907494-19907513 | Msa0673520:intron | 35.0% | |
| TGCAACATCATTGACAATGA+AGG | - | chr4_4:19907790-19907809 | None:intergenic | 35.0% | |
| TCATTGTCAATGATGTTGCA+AGG | + | chr4_4:19907790-19907809 | Msa0673520:CDS | 35.0% | |
| AACGAAGGGTCTATTGAAAA+AGG | + | chr4_4:19907833-19907852 | Msa0673520:CDS | 35.0% | |
| !! | TGAATTTTGAGAGCACAGAT+TGG | - | chr4_4:19907956-19907975 | None:intergenic | 35.0% |
| TTTGTGTCAAGAAAGTCTCT+TGG | - | chr4_4:19908019-19908038 | None:intergenic | 35.0% | |
| AAGAGACTTTCTTGACACAA+AGG | + | chr4_4:19908018-19908037 | Msa0673520:CDS | 35.0% | |
| AGAGACTTTCTTGACACAAA+GGG | + | chr4_4:19908019-19908038 | Msa0673520:CDS | 35.0% | |
| GCATGACAATATGTCAACAA+TGG | + | chr4_4:19908142-19908161 | Msa0673520:CDS | 35.0% | |
| TGGATATGAGTTATCTTGCT+TGG | + | chr4_4:19908162-19908181 | Msa0673520:CDS | 35.0% | |
| GTTGATTGACCACAATTTGA+AGG | + | chr4_4:19908184-19908203 | Msa0673520:CDS | 35.0% | |
| TACTAACGTCCTTCAAATTG+TGG | - | chr4_4:19908196-19908215 | None:intergenic | 35.0% | |
| GAGTGAAGAAATGGCAATTA+TGG | + | chr4_4:19908328-19908347 | Msa0673520:CDS | 35.0% | |
| CATTAATAGGTATCCCAACA+TGG | - | chr4_4:19908361-19908380 | None:intergenic | 35.0% | |
| !! | ATTATTGATGGACTCAATGG+TGG | + | chr4_4:19908403-19908422 | Msa0673520:CDS | 35.0% |
| GCTGGAATGCCTATGAATAA+TGG | + | chr4_4:19903183-19903202 | Msa0673520:CDS | 40.0% | |
| TTTGTTTCGCATACCCTTTG+AGG | + | chr4_4:19903331-19903350 | Msa0673520:intron | 40.0% | |
| GTGTAGTTGGATAGTGAAGA+AGG | + | chr4_4:19903547-19903566 | Msa0673520:intron | 40.0% | |
| TAGTAAGTAGTGTGAGGACT+TGG | + | chr4_4:19903594-19903613 | Msa0673520:intron | 40.0% | |
| CTCCTCCTTGATGCATATTT+CGG | + | chr4_4:19903891-19903910 | Msa0673520:intron | 40.0% | |
| TACCGAAATATGCATCAAGG+AGG | - | chr4_4:19903896-19903915 | None:intergenic | 40.0% | |
| GAGCTACTACGAATTATGCT+TGG | - | chr4_4:19903922-19903941 | None:intergenic | 40.0% | |
| ATTCTTATGTACCATGCTCG+AGG | + | chr4_4:19903986-19904005 | Msa0673520:intron | 40.0% | |
| ! | ATCTTTTCCTCCATTGCCTT+TGG | + | chr4_4:19904048-19904067 | Msa0673520:intron | 40.0% |
| GAATTATGTGCCAAAGGCAA+TGG | - | chr4_4:19904061-19904080 | None:intergenic | 40.0% | |
| TTGCCTTTGGCACATAATTC+TGG | + | chr4_4:19904061-19904080 | Msa0673520:intron | 40.0% | |
| GACGTCACTTCATAGTTGTT+AGG | + | chr4_4:19904088-19904107 | Msa0673520:intron | 40.0% | |
| GATAAACCTGGTACCTTTCT+TGG | + | chr4_4:19904549-19904568 | Msa0673520:intron | 40.0% | |
| GTCAAAGTAAAGGTTCGACT+GGG | - | chr4_4:19904625-19904644 | None:intergenic | 40.0% | |
| TGTCAAAGTAAAGGTTCGAC+TGG | - | chr4_4:19904626-19904645 | None:intergenic | 40.0% | |
| TTCATCATTGGAATCTTGGG+TGG | + | chr4_4:19904726-19904745 | Msa0673520:intron | 40.0% | |
| GGGTGGCATAAAAAAGATGT+TGG | + | chr4_4:19904743-19904762 | Msa0673520:intron | 40.0% | |
| GAAATTTGGACATGTGGAGA+AGG | - | chr4_4:19904845-19904864 | None:intergenic | 40.0% | |
| CTGCAAGAAATTTGGACATG+TGG | - | chr4_4:19904851-19904870 | None:intergenic | 40.0% | |
| TTCTTGCAGTATCCACATTG+TGG | + | chr4_4:19904862-19904881 | Msa0673520:intron | 40.0% | |
| ATGCCGAGAAATATTGTCGA+TGG | - | chr4_4:19904897-19904916 | None:intergenic | 40.0% | |
| CAAGATGATTATCCTCCATG+TGG | - | chr4_4:19904940-19904959 | None:intergenic | 40.0% | |
| TGACAAAGTAGCCAGATCTT+TGG | + | chr4_4:19905147-19905166 | Msa0673520:intron | 40.0% | |
| GATTGAGCAAACCAAAGATC+TGG | - | chr4_4:19905161-19905180 | None:intergenic | 40.0% | |
| ACACTAAAGGAGGAGTTTGA+AGG | - | chr4_4:19905397-19905416 | None:intergenic | 40.0% | |
| TACAAGTGCCAAAGATGCTT+GGG | - | chr4_4:19905422-19905441 | None:intergenic | 40.0% | |
| CTTGTAGCTCCCATTATTCT+TGG | + | chr4_4:19905436-19905455 | Msa0673520:intron | 40.0% | |
| ! | CTAAACTTTTCCCTAAGCCA+TGG | - | chr4_4:19905710-19905729 | None:intergenic | 40.0% |
| ! | GGAGGGTTTGGTTGAAATTT+AGG | + | chr4_4:19905748-19905767 | Msa0673520:intron | 40.0% |
| ! | GGGTTTGGTTGAAATTTAGG+TGG | + | chr4_4:19905751-19905770 | Msa0673520:intron | 40.0% |
| GTGTAGTTGGATAGTGAAGA+AGG | + | chr4_4:19903547-19903566 | Msa0673520:intron | 40.0% | |
| AATGGCCTATAATGGCCAAT+AGG | - | chr4_4:19906461-19906480 | None:intergenic | 40.0% | |
| ATTAGGACCATGTGATCGAA+CGG | + | chr4_4:19906545-19906564 | Msa0673520:intron | 40.0% | |
| ATCATAACCGTTCGATCACA+TGG | - | chr4_4:19906555-19906574 | None:intergenic | 40.0% | |
| TTTACAGCTCAAATGCCAGT+TGG | + | chr4_4:19907293-19907312 | Msa0673520:intron | 40.0% | |
| CAATAAAATCTCAACCTGGC+CGG | + | chr4_4:19907498-19907517 | Msa0673520:intron | 40.0% | |
| ATCAATCACCCCATGATTTC+CGG | - | chr4_4:19907520-19907539 | None:intergenic | 40.0% | |
| AACCATGGGTAGAAGAAGTA+AGG | + | chr4_4:19907755-19907774 | Msa0673520:intron | 40.0% | |
| AACCTTACTTCTTCTACCCA+TGG | - | chr4_4:19907760-19907779 | None:intergenic | 40.0% | |
| CTCATAAGGTCCATACACTA+TGG | - | chr4_4:19907898-19907917 | None:intergenic | 40.0% | |
| TTAGTAGACGTTTGCAAGCA+TGG | + | chr4_4:19908210-19908229 | Msa0673520:CDS | 40.0% | |
| TAGTAGACGTTTGCAAGCAT+GGG | + | chr4_4:19908211-19908230 | Msa0673520:CDS | 40.0% | |
| AAACCAAGTCCAACTCGAAA+TGG | + | chr4_4:19908268-19908287 | Msa0673520:CDS | 40.0% | |
| AGCATCTAGGAGTGAAGAAA+TGG | + | chr4_4:19908319-19908338 | Msa0673520:CDS | 40.0% | |
| GAAATGGCAATTATGGGTCA+TGG | + | chr4_4:19908335-19908354 | Msa0673520:CDS | 40.0% | |
| CGTGATTTAGTCATCATGGC+TGG | + | chr4_4:19903481-19903500 | Msa0673520:intron | 45.0% | |
| !! | TTAGTCATCATGGCTGGCTT+AGG | + | chr4_4:19903487-19903506 | Msa0673520:intron | 45.0% |
| GCCCTCCAAATTGGATTGAT+TGG | + | chr4_4:19903636-19903655 | Msa0673520:intron | 45.0% | |
| TTATGTGCCAAAGGCAATGG+AGG | - | chr4_4:19904058-19904077 | None:intergenic | 45.0% | |
| GAAGAAGCAAATGAGGAACC+AGG | - | chr4_4:19904220-19904239 | None:intergenic | 45.0% | |
| ! | GCAAGTTGGAATAGGAATGC+AGG | - | chr4_4:19904301-19904320 | None:intergenic | 45.0% |
| !! | TGGAAACCAAGAAAGGTACC+AGG | - | chr4_4:19904558-19904577 | None:intergenic | 45.0% |
| !! | GTGATGGTGGAAACCAAGAA+AGG | - | chr4_4:19904565-19904584 | None:intergenic | 45.0% |
| !! | TAAAGGCAAAGGCACTGTGA+TGG | - | chr4_4:19904581-19904600 | None:intergenic | 45.0% |
| GTCGTGGAATCTAAAGGCAA+AGG | - | chr4_4:19904592-19904611 | None:intergenic | 45.0% | |
| GACTCAGTCGTGGAATCTAA+AGG | - | chr4_4:19904598-19904617 | None:intergenic | 45.0% | |
| GATGTTGGTCATAGTCACGT+TGG | + | chr4_4:19904758-19904777 | Msa0673520:intron | 45.0% | |
| ! | GAAGAGCATGAGTGTGAGAA+GGG | - | chr4_4:19904784-19904803 | None:intergenic | 45.0% |
| ! | TGAAGAGCATGAGTGTGAGA+AGG | - | chr4_4:19904785-19904804 | None:intergenic | 45.0% |
| GAGAAATATTGTCGATGGCG+CGG | - | chr4_4:19904892-19904911 | None:intergenic | 45.0% | |
| GCGCCATCGACAATATTTCT+CGG | + | chr4_4:19904891-19904910 | Msa0673520:intron | 45.0% | |
| GGAGTTTGAAGGAAGTGACA+AGG | - | chr4_4:19905386-19905405 | None:intergenic | 45.0% | |
| AGATGCTTGGGGTACACTAA+AGG | - | chr4_4:19905410-19905429 | None:intergenic | 45.0% | |
| TAGTGTACCCCAAGCATCTT+TGG | + | chr4_4:19905411-19905430 | Msa0673520:intron | 45.0% | |
| ACAAGTGCCAAAGATGCTTG+GGG | - | chr4_4:19905421-19905440 | None:intergenic | 45.0% | |
| CTACAAGTGCCAAAGATGCT+TGG | - | chr4_4:19905423-19905442 | None:intergenic | 45.0% | |
| GCCCTCCAAATTGGATTGAT+TGG | + | chr4_4:19903636-19903655 | Msa0673520:intron | 45.0% | |
| TGCACCTATTTCGCACCTAT+TGG | + | chr4_4:19906443-19906462 | Msa0673520:intron | 45.0% | |
| ATGGCCAATAGGTGCGAAAT+AGG | - | chr4_4:19906450-19906469 | None:intergenic | 45.0% | |
| TCGCACCTATTGGCCATTAT+AGG | + | chr4_4:19906453-19906472 | Msa0673520:intron | 45.0% | |
| !! | CGGCCAGGTTGAGATTTTAT+TGG | - | chr4_4:19907500-19907519 | None:intergenic | 45.0% |
| TCTACTCCTGTCACAACCAT+GGG | + | chr4_4:19907741-19907760 | Msa0673520:intron | 45.0% | |
| ACAGGCTTCAATGCCACATA+GGG | - | chr4_4:19907874-19907893 | None:intergenic | 45.0% | |
| !! | ATCTCAGGTTGAGGCTCATA+AGG | - | chr4_4:19907912-19907931 | None:intergenic | 45.0% |
| ATGAGCCTCAACCTGAGATT+TGG | + | chr4_4:19907913-19907932 | Msa0673520:CDS | 45.0% | |
| ! | AAAGGCCAAATCTCAGGTTG+AGG | - | chr4_4:19907921-19907940 | None:intergenic | 45.0% |
| TCTGGTAAAGGCCAAATCTC+AGG | - | chr4_4:19907927-19907946 | None:intergenic | 45.0% | |
| ! | TGAGATTTGGCCTTTACCAG+AGG | + | chr4_4:19907926-19907945 | Msa0673520:CDS | 45.0% |
| ! | GAGATTTGGCCTTTACCAGA+GGG | + | chr4_4:19907927-19907946 | Msa0673520:CDS | 45.0% |
| ! | AGATTTGGCCTTTACCAGAG+GGG | + | chr4_4:19907928-19907947 | Msa0673520:CDS | 45.0% |
| ! | CTTGACACAAAGGGTTCTGA+AGG | + | chr4_4:19908028-19908047 | Msa0673520:CDS | 45.0% |
| ! | TTGTTGTCGCCATTTCGAGT+TGG | - | chr4_4:19908280-19908299 | None:intergenic | 45.0% |
| ATTATGGGTCATGGCCATGT+TGG | + | chr4_4:19908344-19908363 | Msa0673520:CDS | 45.0% | |
| TTATGGGTCATGGCCATGTT+GGG | + | chr4_4:19908345-19908364 | Msa0673520:CDS | 45.0% | |
| CCAGAATTGACCTCACCAAA+TGG | - | chr4_4:19908452-19908471 | None:intergenic | 45.0% | |
| ! | CCATTTGGTGAGGTCAATTC+TGG | + | chr4_4:19908449-19908468 | Msa0673520:CDS | 45.0% |
| !! | GTGAGGTCAATTCTGGAGTT+TGG | + | chr4_4:19908456-19908475 | Msa0673520:CDS | 45.0% |
| !!! | GATTTAATATTTTTTTTTTT+TGG | + | chr4_4:19903395-19903414 | Msa0673520:intron | 5.0% |
| !!! | AATAGTATAATATATTTTTT+TGG | - | chr4_4:19906994-19907013 | None:intergenic | 5.0% |
| ! | GTTTCGCATACCCTTTGAGG+TGG | + | chr4_4:19903334-19903353 | Msa0673520:intron | 50.0% |
| AACAAGAGTGGGATCACTGG+TGG | - | chr4_4:19904149-19904168 | None:intergenic | 50.0% | |
| ACCAGTGATCCCACTCTTGT+TGG | + | chr4_4:19904148-19904167 | Msa0673520:intron | 50.0% | |
| TCCAACAAGAGTGGGATCAC+TGG | - | chr4_4:19904152-19904171 | None:intergenic | 50.0% | |
| ACTGGGAAATGACTCAGTCG+TGG | - | chr4_4:19904608-19904627 | None:intergenic | 50.0% | |
| TAGCGGTTGCAGCAATCACA+TGG | - | chr4_4:19904686-19904705 | None:intergenic | 50.0% | |
| GTCCTCTTGCATATGCCACA+TGG | + | chr4_4:19904922-19904941 | Msa0673520:intron | 50.0% | |
| CTCCATGTGGCATATGCAAG+AGG | - | chr4_4:19904927-19904946 | None:intergenic | 50.0% | |
| CTCTTGCATATGCCACATGG+AGG | + | chr4_4:19904925-19904944 | Msa0673520:intron | 50.0% | |
| TGCTTGGGGTACACTAAAGG+AGG | - | chr4_4:19905407-19905426 | None:intergenic | 50.0% | |
| TCAACCTGGCCGGAAATCAT+GGG | + | chr4_4:19907508-19907527 | Msa0673520:intron | 50.0% | |
| CATGGTTGTGACAGGAGTAG+AGG | - | chr4_4:19907742-19907761 | None:intergenic | 50.0% | |
| CTCTACTCCTGTCACAACCA+TGG | + | chr4_4:19907740-19907759 | Msa0673520:intron | 50.0% | |
| CTTCTACCCATGGTTGTGAC+AGG | - | chr4_4:19907750-19907769 | None:intergenic | 50.0% | |
| GCTGAACTTAGCACCCTATG+TGG | + | chr4_4:19907858-19907877 | Msa0673520:CDS | 50.0% | |
| CACAGGCTTCAATGCCACAT+AGG | - | chr4_4:19907875-19907894 | None:intergenic | 50.0% | |
| GAAGCCTGTGCCATAGTGTA+TGG | + | chr4_4:19907885-19907904 | Msa0673520:CDS | 50.0% | |
| AGGTCCATACACTATGGCAC+AGG | - | chr4_4:19907892-19907911 | None:intergenic | 50.0% | |
| ! | GATTTGGCCTTTACCAGAGG+GGG | + | chr4_4:19907929-19907948 | Msa0673520:CDS | 50.0% |
| !! | TCGCCATTTCGAGTTGGACT+TGG | - | chr4_4:19908274-19908293 | None:intergenic | 50.0% |
| CTAGATGCTGCTAGAAGTGG+TGG | - | chr4_4:19908308-19908327 | None:intergenic | 50.0% | |
| CACCACTTCTAGCAGCATCT+AGG | + | chr4_4:19908306-19908325 | Msa0673520:CDS | 50.0% | |
| CTCCTAGATGCTGCTAGAAG+TGG | - | chr4_4:19908311-19908330 | None:intergenic | 50.0% | |
| !! | TTGATGGACTCAATGGTGGC+TGG | + | chr4_4:19908407-19908426 | Msa0673520:CDS | 50.0% |
| ! | AGGATGGGTTCTGGCAATGC+TGG | + | chr4_4:19903165-19903184 | Msa0673520:CDS | 55.0% |
| ! | GAAGATGAGTCGGTGCCCTT+TGG | + | chr4_4:19903255-19903274 | Msa0673520:CDS | 55.0% |
| CTAGGATCGACCTCGCCAAA+GGG | - | chr4_4:19903273-19903292 | None:intergenic | 55.0% | |
| ! | TCTAGGATCGACCTCGCCAA+AGG | - | chr4_4:19903274-19903293 | None:intergenic | 55.0% |
| GAATGTGAAGGTGGCGTACC+TGG | + | chr4_4:19904199-19904218 | Msa0673520:intron | 55.0% | |
| !! | AGGCAAAGGCACTGTGATGG+TGG | - | chr4_4:19904578-19904597 | None:intergenic | 55.0% |
| TGGCGCGGAAAACCACAATG+TGG | - | chr4_4:19904877-19904896 | None:intergenic | 55.0% | |
| CTCAACCTGGCCGGAAATCA+TGG | + | chr4_4:19907507-19907526 | Msa0673520:intron | 55.0% | |
| CAACCTGGCCGGAAATCATG+GGG | + | chr4_4:19907509-19907528 | Msa0673520:intron | 55.0% | |
| GATTGGACCCCCTCTGGTAA+AGG | - | chr4_4:19907939-19907958 | None:intergenic | 55.0% | |
| GATGCTGCTAGAAGTGGTGG+TGG | - | chr4_4:19908305-19908324 | None:intergenic | 55.0% | |
| ! | GTGCACGAGACAGTGCCATT+TGG | + | chr4_4:19908434-19908453 | Msa0673520:CDS | 55.0% |
| !! | CGAGACAGTGCCATTTGGTG+AGG | + | chr4_4:19908439-19908458 | Msa0673520:CDS | 55.0% |
| TCACCCCATGATTTCCGGCC+AGG | - | chr4_4:19907515-19907534 | None:intergenic | 60.0% | |
| AGCACAGATTGGACCCCCTC+TGG | - | chr4_4:19907945-19907964 | None:intergenic | 60.0% | |
| ! | TGAGTCGGTGCCCTTTGGCG+AGG | + | chr4_4:19903260-19903279 | Msa0673520:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 19903159 | 19908496 | 19903159 | ID=Msa0673520;Name=Msa0673520 |
| chr4_4 | mRNA | 19903159 | 19908496 | 19903159 | ID=Msa0673520-mRNA-1;Parent=Msa0673520;Name=Msa0673520-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|0|0|2|0|284 |
| chr4_4 | exon | 19903159 | 19903293 | 19903159 | ID=Msa0673520-mRNA-1:exon:5765;Parent=Msa0673520-mRNA-1 |
| chr4_4 | exon | 19907777 | 19908496 | 19907777 | ID=Msa0673520-mRNA-1:exon:5766;Parent=Msa0673520-mRNA-1 |
| chr4_4 | CDS | 19903159 | 19903293 | 19903159 | ID=Msa0673520-mRNA-1:cds;Parent=Msa0673520-mRNA-1 |
| chr4_4 | CDS | 19907777 | 19908496 | 19907777 | ID=Msa0673520-mRNA-1:cds;Parent=Msa0673520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
