AlfalfaGEDB | Msa0674130

M. sativa cultivar zhongmu-4 / Msa0674130

KEGG: K17604
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0674130	XP_039685680.1	84.837	798	101	3	1	778	1	798	0.0	1386

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0674130	sp\|Q9SZL8\|FRS5_ARATH	27.856	639	381	14	34	665	72	637	4.22e-69	246

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0674130	D3YBB9	76.718	786	167	3	1	778	49	826	0.0	1260

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TFs/TRs:

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Gene ID	Type	Classification
Msa0674130	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0674130	MtrunA17_Chr3g0082121	31.693	691	384	17	41	727	49	655	1.49e-101	328
Msa0674130	MtrunA17_Chr2g0324011	30.236	635	367	11	36	665	8	571	8.14e-101	323
Msa0674130	MtrunA17_Chr3g0088371	83.537	164	24	1	618	778	1	164	1.04e-90	283
Msa0674130	MtrunA17_Chr1g0202341	29.764	635	365	17	34	662	50	609	4.70e-81	273
Msa0674130	MtrunA17_Chr8g0363841	28.935	629	374	13	40	665	22	580	1.81e-76	260
Msa0674130	MtrunA17_Chr1g0203721	26.410	780	449	19	1	739	16	711	7.59e-75	260
Msa0674130	MtrunA17_Chr5g0448761	25.142	704	448	13	34	728	59	692	6.42e-69	242
Msa0674130	MtrunA17_Chr2g0296781	27.541	679	406	19	39	708	1	602	1.84e-68	240
Msa0674130	MtrunA17_Chr6g0458391	26.984	630	357	14	41	662	231	765	3.47e-66	234
Msa0674130	MtrunA17_Chr6g0477261	28.843	527	317	13	180	699	7	482	2.50e-63	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0674130	AT4G38180.1	27.856	639	381	14	34	665	72	637	4.29e-70	246
Msa0674130	AT4G15090.1	24.827	721	448	16	50	753	66	709	1.22e-61	223
Msa0674130	AT4G15090.5	24.827	721	448	16	50	753	66	709	1.22e-61	223
Msa0674130	AT4G15090.3	24.827	721	448	16	50	753	66	709	1.22e-61	223
Msa0674130	AT4G15090.2	24.827	721	448	16	50	753	66	709	1.22e-61	223
Msa0674130	AT4G15090.4	24.827	721	448	16	50	753	66	709	1.22e-61	223
Msa0674130	AT2G27110.2	26.466	597	365	15	127	719	108	634	5.16e-54	201
Msa0674130	AT2G27110.1	26.466	597	365	15	127	719	108	634	5.16e-54	201
Msa0674130	AT2G27110.3	26.937	542	325	13	180	719	17	489	2.38e-53	197
Msa0674130	AT3G06250.2	24.961	633	352	16	34	661	189	703	5.02e-52	194

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Find 123 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGCTCTGGTTTATGTAA+TGG	0.504865	4_4:-21248481	None:intergenic
AACAAAGAAGGTTTCAAGAA+GGG	0.545537	4_4:+21248283	Msa0674130:CDS
AACAATAAATATCGGCCATT+AGG	0.388497	4_4:+21248883	Msa0674130:CDS
AACTCGTCAAAAGGAGATGG+TGG	0.603142	4_4:+21248675	Msa0674130:CDS
AAGAAAGACCAAATCCAATT+AGG	0.397771	4_4:+21250731	Msa0674130:CDS
AATCAGATTTCGACTACAAT+TGG	0.318540	4_4:+21249651	Msa0674130:CDS
AATCGAACAAGTGAATGGTC+TGG	0.540971	4_4:-21249854	None:intergenic
AATGAAGCTCTCTCGAAACC+AGG	0.565261	4_4:+21248733	Msa0674130:CDS
AATTCTTGATTGTTATGTAT+TGG	0.372244	4_4:+21250969	Msa0674130:three_prime_UTR
ACAAAATAAGAAATCGGATA+AGG	0.469178	4_4:+21248237	Msa0674130:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTAACTTCATCTGAGAG+TGG	+	chr4_4:21248031-21248050	Msa0674130:CDS	30.0%
TAAAGAATCATGGAAGTCTT+TGG	+	chr4_4:21248117-21248136	Msa0674130:CDS	30.0%
TAACAAAGAAGGTTTCAAGA+AGG	+	chr4_4:21248282-21248301	Msa0674130:CDS	30.0%
AACAAAGAAGGTTTCAAGAA+GGG	+	chr4_4:21248283-21248302	Msa0674130:CDS	30.0%
TAAAGAAAAACCAGAGGAAA+GGG	+	chr4_4:21248372-21248391	Msa0674130:CDS	30.0%
TTTAAGTCCGAAAATCGAAA+AGG	-	chr4_4:21248640-21248659	None:intergenic	30.0%
TGGATATCATAGTAAAAACC+TGG	-	chr4_4:21248754-21248773	None:intergenic	30.0%
CAACAAGATTATGCTCTATT+TGG	+	chr4_4:21248826-21248845	Msa0674130:CDS	30.0%
GCCGATATTTATTGTTTGTT+CGG	-	chr4_4:21248879-21248898	None:intergenic	30.0%
AACAATAAATATCGGCCATT+AGG	+	chr4_4:21248883-21248902	Msa0674130:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	21247977	21251010	21247977	ID=Msa0674130;Name=Msa0674130
chr4_4	mRNA	21247977	21251010	21247977	ID=Msa0674130-mRNA-1;Parent=Msa0674130;Name=Msa0674130-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45\|1\|1\|1\|1\|1\|2\|218\|778
chr4_4	exon	21247977	21248904	21247977	ID=Msa0674130-mRNA-1:exon:6032;Parent=Msa0674130-mRNA-1
chr4_4	exon	21249339	21251010	21249339	ID=Msa0674130-mRNA-1:exon:6033;Parent=Msa0674130-mRNA-1
chr4_4	five_prime_UTR	21247977	21248021	21247977	ID=Msa0674130-mRNA-1:five_prime_utr;Parent=Msa0674130-mRNA-1
chr4_4	CDS	21248022	21248904	21248022	ID=Msa0674130-mRNA-1:cds;Parent=Msa0674130-mRNA-1
chr4_4	CDS	21249339	21250792	21249339	ID=Msa0674130-mRNA-1:cds;Parent=Msa0674130-mRNA-1
chr4_4	three_prime_UTR	21250793	21251010	21250793	ID=Msa0674130-mRNA-1:three_prime_utr;Parent=Msa0674130-mRNA-1

Gene Sequence

>Msa0674130

ATGGATTTGATATTAACTTCATCTGAGAGTGGACAATTGACGGTTGAAAATTCAGTTATTGATGCGGATAGTTCTCAATGTTACTCATTTAGTAATAAAGAATCATGGAAGTCTTTGGTCTTTAAATCTATAAAAGAGATTGAAGATTTTTATTTTAATTATGCATATAACACTGGATTCTCTGTTAGGAGTATGTTGAAGTCCAAGAACAATTCACAAAATAAGAAATCGGATAAGGTACATTATGTGCGTTATGCTTGTAACAAAGAAGGTTTCAAGAAGGGAAGTCTGCTTAATCCTAAAAACAGGCCAACATGTGACAGTCCAGTTCTTGTTGAGTATGAGAAAGCTAAAGAAAAACCAGAGGAAAGGGTTGGTTGTAAAGCTGGAATATATTTGAAGTTGGATGAAGCGTTGAATGTCTATAAGATATATAAGTGGGAAGTTGATCACTGTCATCCATTACATAAACCAGAGCATTTGTGCTACTTGAGATCATTTCGAGAAGTAAATGAAGTTCAAGGACAACTTGCTTTAATAAATTCTAAAGCTGGAATGTCGATGAGAACATCTTATGAAGCGATGGGTCAAGGAGTTGGAGGCACGGAGAATCTTCCTTTTCGATTTTCGGACTTAAAGAACTATCTAATGACAACTCGTCAAAAGGAGATGGTGGCTGGTGAAGCAACTGTTATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCAGGTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCCAGTATTTTTTGGGCAGATGGAATTATGCAACAAGATTATGCTCTATTTGGTGATGTTGTCAGTTTTGATACAACTTACCGAACAAACAATAAATATCGGCCATTAGCTGCCTTTCTTGGTTTTGACAATCATCGTAAGAGTGTGTTATTTGGTGCTGCGCTACTGTATGATGAGACATCAGCTACTTTTGATTGGTTGTTTACAACTTTTTTGAAGTGTATGTCCAATAAGAAACCTCAAACCATATACACAGACCAGGCTAGTGCGTTGTTGAAGTCAATTCCGAATGTTTTTCAAGGTGTTTTTCATGGTCTTTGCTCATGGCACATGGGAGAGAATGCAAAGAAAAATCTCGGCTCTCGTGCAAACAGTGCATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTCGAAGATGAATCAGATTTCGACTACAATTGGGATCAGATGATGAAAAACTATTTTAATGGAAGGCCTACTTCGGACTTTAAGTGGCTTGTTCAAACTCATTCAAATCGTATGCATTGGTCTTCAGTTTGGGTGAGGTCACATTTTACAGCTGGTTTGAAAACGACACAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGAATTTTTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGGGATAATCATGCTGAGTTGGACTTTAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAACAGTCAGCTTATGCGGTCCGTAGTAAACAAGTATACACCATCTTGCTTTTCATTTATTCACAGTCAGTATGACCTTTCCTTCAAATACTATTATGAGGAGGACACAACAAAAGGGTCTGAATTGAACAAGTTCTTCAAAGTTTTCACAATTGAAAAGGTTGATTATAATTACGATGATGTTGATAATGATAATGAGAGGGTTTCGAATGTTGATGTTTTGGATGCAGAATTTGAAGAAAACCTTTCCCCAAGGTTTGAAGATCATAATCGACTTGATGAAAGGGTTGTCACAGTCGACATTAGGAGCAAAAGTTTTACTTGTTCATGTCGTATGTTTGAGAACCGGGGTTTCTTATGTCGACATGTTTTCAAGATTTTGGAGGTCTTAGGTGGTCATGTGCAATATCATTTTTTGAAGACTATACCTGCACAATATGTTTTAAAGCGGTGGACTAGAGATGTGCGTCCGTCTGTCGATAAGCTGAAATCCACCATGAATGTTGGCACTAAAGACACCACTCAAGCACAACGATATCAACAAATTTGTGCTGTTACAGTTCAGCTTTCTACACGTGTTTGCGCAGATGCGGAGGCATCTGAAATATTTCTCAACGGTGTTCTTGAGGCAGGGAAAAAGGCAGAGGAGTTTCTTATTTCTAAAGGTATTCATACAGATCGATCATCCGTTACGCCTTCTAAGTCTTCAAAAGCAGTTGCTGTCTATGAACCATCTGTTGGGACTGCACCAAAGTTCAAAGAAAGACCAAATCCAATTAGGTCAAAGAAGCGACTTAAAAGTGATTATGAAAAAGCTTGA

Protein sequence

>Msa0674130

MDLILTSSESGQLTVENSVIDADSSQCYSFSNKESWKSLVFKSIKEIEDFYFNYAYNTGFSVRSMLKSKNNSQNKKSDKVHYVRYACNKEGFKKGSLLNPKNRPTCDSPVLVEYEKAKEKPEERVGCKAGIYLKLDEALNVYKIYKWEVDHCHPLHKPEHLCYLRSFREVNEVQGQLALINSKAGMSMRTSYEAMGQGVGGTENLPFRFSDLKNYLMTTRQKEMVAGEATVIQEFFRNEALSKPGFYYDIQVDAAEDIASIFWADGIMQQDYALFGDVVSFDTTYRTNNKYRPLAAFLGFDNHRKSVLFGAALLYDETSATFDWLFTTFLKCMSNKKPQTIYTDQASALLKSIPNVFQGVFHGLCSWHMGENAKKNLGSRANSAFFDELTNLVSNVEDESDFDYNWDQMMKNYFNGRPTSDFKWLVQTHSNRMHWSSVWVRSHFTAGLKTTQLSESFNAFLREFLQPDHSLVRFFSHFNIMVQRMRDNHAELDFKAANTRTKNNYPNSQLMRSVVNKYTPSCFSFIHSQYDLSFKYYYEEDTTKGSELNKFFKVFTIEKVDYNYDDVDNDNERVSNVDVLDAEFEENLSPRFEDHNRLDERVVTVDIRSKSFTCSCRMFENRGFLCRHVFKILEVLGGHVQYHFLKTIPAQYVLKRWTRDVRPSVDKLKSTMNVGTKDTTQAQRYQQICAVTVQLSTRVCADAEASEIFLNGVLEAGKKAEEFLISKGIHTDRSSVTPSKSSKAVAVYEPSVGTAPKFKERPNPIRSKKRLKSDYEKA*