AlfalfaGEDB | Msa0675020

M. sativa cultivar zhongmu-4 / Msa0675020

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0675020	XP_003603231.1	68.333	120	14	2	120	218	171	287	2.58e-38	151

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0675020	sp\|O64842\|PBL12_ARATH	57.627	118	27	2	120	217	177	291	2.75e-32	128

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0675020	G7J941	68.333	120	14	2	120	218	171	287	1.23e-38	151

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0675020	MtrunA17_Chr3g0136421	68.333	120	14	2	120	218	171	287	2.38e-42	151
Msa0675020	MtrunA17_Chr1g0150741	65.546	119	18	2	120	218	171	286	2.16e-40	146
Msa0675020	MtrunA17_Chr2g0300711	58.475	118	26	2	120	217	168	282	5.88e-34	131
Msa0675020	MtrunA17_Chr4g0070411	57.627	118	27	2	120	217	174	288	8.16e-33	128
Msa0675020	MtrunA17_Chr5g0416011	56.303	119	27	3	120	217	228	342	7.66e-32	125
Msa0675020	MtrunA17_Chr8g0362661	58.182	110	25	2	129	217	231	340	3.55e-31	123
Msa0675020	MtrunA17_Chr5g0408941	57.798	109	26	1	129	217	186	294	4.89e-31	122
Msa0675020	MtrunA17_Chr6g0452761	59.091	110	24	2	129	217	230	339	8.89e-31	122
Msa0675020	MtrunA17_Chr7g0245571	54.237	118	31	2	120	217	180	294	1.19e-30	121
Msa0675020	MtrunA17_Chr7g0216551	56.364	110	27	2	129	217	221	330	7.57e-30	119

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0675020	AT2G26290.1	57.627	118	27	2	120	217	177	291	2.80e-33	128
Msa0675020	AT2G05940.1	57.627	118	27	2	120	217	176	290	8.03e-33	127
Msa0675020	AT5G35580.1	56.881	109	27	1	129	217	171	279	1.82e-30	121
Msa0675020	AT5G35580.2	56.881	109	27	1	129	217	183	291	2.14e-30	121
Msa0675020	AT1G61590.1	54.622	119	31	2	120	218	188	303	2.34e-30	120
Msa0675020	AT5G01020.1	54.237	118	31	2	120	217	158	272	3.02e-30	120
Msa0675020	AT3G28690.1	54.622	119	29	3	120	217	118	232	2.71e-29	116
Msa0675020	AT3G28690.3	54.622	119	29	3	120	217	167	281	4.83e-29	117
Msa0675020	AT5G56460.1	55.085	118	30	2	120	217	168	282	5.20e-29	116
Msa0675020	AT3G28690.2	54.622	119	29	3	120	217	218	332	7.05e-29	117

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Find 105 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTAGTTTCTATGAACT+GGG	0.497596	4_4:+23159146	Msa0675020:three_prime_UTR
AACAGAGTCATACCAGTGGT+TGG	0.615367	4_4:-23155608	None:intergenic
AACCTGAGAAATAGAGCAAC+CGG	0.455042	4_4:-23154918	None:intergenic
AACCTTGGATTAGCTGAAGA+TGG	0.530476	4_4:+23156806	Msa0675020:CDS
AAGAAGGAAAAGAAGCCATG+AGG	0.668105	4_4:+23155580	Msa0675020:CDS
AAGAGTGATGTGTATAGGTA+TGG	0.508900	4_4:+23157302	Msa0675020:CDS
AAGCTTCCTTTCATAATGGA+AGG	0.546475	4_4:+23159476	Msa0675020:three_prime_UTR
AATGACAATTGTAATGAGAG+CGG	0.654209	4_4:-23159097	None:intergenic
AATGTGCACCACAATCTGCA+GGG	0.681242	4_4:+23158982	Msa0675020:CDS
AATTGCATTAGGTGCAGCTA+AGG	0.490148	4_4:+23156601	Msa0675020:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCAAGGTACATAAATAAAAG+AGG	-	chr4_4:23155040-23155059	None:intergenic	30.0%
AACACTTGGAGTCAATTTAA+TGG	-	chr4_4:23155435-23155454	None:intergenic	30.0%
TAGGATTTGATGTCTAGATT+TGG	+	chr4_4:23155470-23155489	Msa0675020:intron	30.0%
GAAAAGGTAATATGATCTCA+AGG	+	chr4_4:23155640-23155659	Msa0675020:intron	30.0%
CAAAATTTCACTCAAGCTTA+TGG	+	chr4_4:23155907-23155926	Msa0675020:CDS	30.0%
AGGACTTAAAAAATCTCACA+AGG	+	chr4_4:23155987-23156006	Msa0675020:intron	30.0%
TCCAAATATATTACTGGACT+CGG	+	chr4_4:23156679-23156698	Msa0675020:CDS	30.0%
GTTGTGTAATCCTGAATTTA+GGG	-	chr4_4:23156776-23156795	None:intergenic	30.0%
AGTTGTGTAATCCTGAATTT+AGG	-	chr4_4:23156777-23156796	None:intergenic	30.0%
ACAACTAAACTATCAAACCT+TGG	+	chr4_4:23156791-23156810	Msa0675020:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	23154902	23160075	23154902	ID=Msa0675020;Name=Msa0675020
chr4_4	mRNA	23154902	23160075	23154902	ID=Msa0675020-mRNA-1;Parent=Msa0675020;Name=Msa0675020-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0\|0.54\|0.58\|1\|0.81\|0.66\|12\|788\|361
chr4_4	exon	23154902	23154937	23154902	ID=Msa0675020-mRNA-1:exon:6439;Parent=Msa0675020-mRNA-1
chr4_4	exon	23155306	23155380	23155306	ID=Msa0675020-mRNA-1:exon:6440;Parent=Msa0675020-mRNA-1
chr4_4	exon	23155473	23155645	23155473	ID=Msa0675020-mRNA-1:exon:6441;Parent=Msa0675020-mRNA-1
chr4_4	exon	23155873	23155973	23155873	ID=Msa0675020-mRNA-1:exon:6442;Parent=Msa0675020-mRNA-1
chr4_4	exon	23156564	23156700	23156564	ID=Msa0675020-mRNA-1:exon:6443;Parent=Msa0675020-mRNA-1
chr4_4	exon	23156785	23156848	23156785	ID=Msa0675020-mRNA-1:exon:6444;Parent=Msa0675020-mRNA-1
chr4_4	exon	23157288	23157354	23157288	ID=Msa0675020-mRNA-1:exon:6445;Parent=Msa0675020-mRNA-1
chr4_4	exon	23157608	23157688	23157608	ID=Msa0675020-mRNA-1:exon:6446;Parent=Msa0675020-mRNA-1
chr4_4	exon	23158104	23158280	23158104	ID=Msa0675020-mRNA-1:exon:6447;Parent=Msa0675020-mRNA-1
chr4_4	exon	23158810	23158879	23158810	ID=Msa0675020-mRNA-1:exon:6448;Parent=Msa0675020-mRNA-1
chr4_4	exon	23158964	23159651	23158964	ID=Msa0675020-mRNA-1:exon:6449;Parent=Msa0675020-mRNA-1
chr4_4	exon	23159871	23160075	23159871	ID=Msa0675020-mRNA-1:exon:6450;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23154902	23154937	23154902	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23155306	23155380	23155306	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23155473	23155645	23155473	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23155873	23155973	23155873	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23156564	23156700	23156564	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23156785	23156848	23156785	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23157288	23157354	23157288	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23157608	23157688	23157608	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23158104	23158280	23158104	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23158810	23158879	23158810	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	CDS	23158964	23159068	23158964	ID=Msa0675020-mRNA-1:cds;Parent=Msa0675020-mRNA-1
chr4_4	three_prime_UTR	23159069	23159651	23159069	ID=Msa0675020-mRNA-1:three_prime_utr;Parent=Msa0675020-mRNA-1
chr4_4	three_prime_UTR	23159871	23160075	23159871	ID=Msa0675020-mRNA-1:three_prime_utr;Parent=Msa0675020-mRNA-1

Gene Sequence

>Msa0675020

TTTCTCGTCTTTCTCTCCGGTTGCTCTATTTCTCAGGATGTTATCTGCTTATCAGAACCTGTTGATAAGGCAAAAGGCTTAACTGTTGCAGAGTGTTTTGGGATTTCACAGGATTTGATGTCTAGATTTGGTACTGCTGCTGCACAGACTACTGAGTCTGTGTCTGATCATGGAAATACAAAGAAGACTGGTGCTGCTTATGATCAGGCTAATCAAACAAGAAGGAAAAGAAGCCATGAGGGAACACCAACCACTGGTATGACTCTGTTCTGCTGTTTGAAAAGATTTCAGGTCATTAACAACTCACAATCAGCAAGCCAAAATTTCACTCAAGCTTATGGTTCTTTTCAAGTTTCACAAAATGATGTCTTCTCTAATGAGTCAAGATCCTCTGCTACATTACCATGGTCAACTAGAATGAAAATTGCATTAGGTGCAGCTAAGGGACTAGCTTTCCTTCATGAAGCAGATAAACTTGTAATATATAGGGATTTCAAAACTCCAAATATATTACTGGACTCGGATTACACAACTAAACTATCAAACCTTGGATTAGCTGAAGATGGTCCTGAAGGAGAAGAAACACGTCATCTTTCTACCAAGAGTGATGTGTATAGGTATGGAGTAGTGTTGTTGGAATTGCCTACAGGAAACGCTGGTAATCATTCGGCTGCAGTGACTTATATCATAATTAGCATTGGCGGTTGCATGATCCTCAGTTGTAGTGCTGATAGGTTTAGGCCACCAATTCTTATCGATGTGAGCAAGATAGACATGTCAACTACTGTCCTTGGCTTCAAAATTTCCATGCCAGTCATGATTGCTCCAACTGCTATGCAGAAAATGGCTCATCCGGAGGGTATCATTGCTTTTTCTTTAAATTCACTTGAATTTCTGAAATGCAAAATTAAACAGCCTGGTTTTAAGCAAATGAAGATTATAAGGCAGGAGAGGCATACAGTTTGCCTCATTGAGTTTGAAGATGTGAATAGTGCTACGAATGTGCACCACAATCTGCAGGGTGCTGTTATCCCAAGTTCTGACATATCATTGAGATACTTTCTTTCTTTTCATGGCACGGCTTGA

Protein sequence

>Msa0675020

FLVFLSGCSISQDVICLSEPVDKAKGLTVAECFGISQDLMSRFGTAAAQTTESVSDHGNTKKTGAAYDQANQTRRKRSHEGTPTTGMTLFCCLKRFQVINNSQSASQNFTQAYGSFQVSQNDVFSNESRSSATLPWSTRMKIALGAAKGLAFLHEADKLVIYRDFKTPNILLDSDYTTKLSNLGLAEDGPEGEETRHLSTKSDVYRYGVVLLELPTGNAGNHSAAVTYIIISIGGCMILSCSADRFRPPILIDVSKIDMSTTVLGFKISMPVMIAPTAMQKMAHPEGIIAFSLNSLEFLKCKIKQPGFKQMKIIRQERHTVCLIEFEDVNSATNVHHNLQGAVIPSSDISLRYFLSFHGTA*