AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0675060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0675060 MtrunA17_Chr4g0018421 98.889 90 1 0 1 90 1 90 3.53e-60 182
Msa0675060 MtrunA17_Chr7g0246431 63.291 79 28 1 1 79 1 78 1.42e-29 104
Msa0675060 MtrunA17_Chr8g0366231 60.811 74 29 0 1 74 1 74 1.26e-28 102
Msa0675060 MtrunA17_Chr4g0061671 62.162 74 28 0 1 74 1 74 1.56e-28 101
Msa0675060 MtrunA17_Chr5g0420091 54.945 91 36 1 1 86 1 91 1.77e-28 102
Msa0675060 MtrunA17_Chr3g0097101 58.140 86 34 2 1 85 16 100 5.85e-28 101
Msa0675060 MtrunA17_Chr4g0061691 61.429 70 27 0 1 70 1 70 1.31e-27 100
Msa0675060 MtrunA17_Chr3g0122251 52.688 93 43 1 1 93 1 92 3.72e-27 99.4
Msa0675060 MtrunA17_Chr7g0220111 55.172 87 35 1 1 87 1 83 6.33e-27 99.0
Msa0675060 MtrunA17_Chr8g0351041 54.118 85 38 1 1 85 1 84 9.99e-27 96.3
Msa0675060 MtrunA17_Chr2g0279821 61.111 72 27 1 1 72 1 71 1.02e-26 98.2
Msa0675060 MtrunA17_Chr5g0420081 57.534 73 31 0 1 73 1 73 1.42e-26 97.4
Msa0675060 MtrunA17_Chr6g0455511 59.211 76 31 0 1 76 1 76 2.30e-26 97.4
Msa0675060 MtrunA17_Chr8g0351051 65.714 70 23 1 1 70 1 69 2.88e-26 97.1
Msa0675060 MtrunA17_Chr5g0427921 66.102 59 20 0 1 59 1 59 4.37e-26 91.3
Msa0675060 MtrunA17_Chr4g0049541 60.274 73 28 1 1 73 1 72 5.27e-26 95.9
Msa0675060 MtrunA17_Chr3g0077501 58.333 72 29 1 1 72 1 71 7.11e-26 95.5
Msa0675060 MtrunA17_Chr7g0246381 71.186 59 17 0 1 59 1 59 7.92e-26 91.3
Msa0675060 MtrunA17_Chr8g0380021 59.722 72 28 1 1 72 17 87 8.93e-26 95.9
Msa0675060 MtrunA17_Chr2g0308251 66.102 59 20 0 1 59 1 59 1.03e-25 91.3
Msa0675060 MtrunA17_Chr8g0351031 52.941 85 39 1 1 85 1 84 1.73e-25 94.4
Msa0675060 MtrunA17_Chr5g0411691 62.857 70 25 1 1 70 1 69 3.14e-25 94.4
Msa0675060 MtrunA17_Chr8g0377561 71.930 57 16 0 1 57 1 57 6.10e-25 89.7
Msa0675060 MtrunA17_Chr7g0220121 57.143 70 30 0 1 70 1 70 8.06e-25 93.6
Msa0675060 MtrunA17_Chr6g0474371 54.321 81 36 1 1 81 1 80 9.75e-25 91.7
Msa0675060 MtrunA17_Chr2g0284911 58.333 72 29 1 1 72 16 86 1.14e-24 93.2
Msa0675060 MtrunA17_Chr4g0020221 51.220 82 39 1 1 82 1 81 1.54e-24 92.8
Msa0675060 MtrunA17_Chr1g0173161 64.407 59 21 0 1 59 1 59 2.67e-24 87.8
Msa0675060 MtrunA17_Chr4g0057151 60.000 70 27 1 1 70 1 69 2.98e-24 90.9
Msa0675060 MtrunA17_Chr5g0427401 51.685 89 36 3 1 88 1 83 3.70e-24 91.3
Msa0675060 MtrunA17_Chr1g0204111 61.429 70 26 1 1 70 17 85 3.12e-23 89.4
Msa0675060 MtrunA17_Chr1g0164791 54.667 75 33 1 1 74 1 75 4.59e-22 85.9
Msa0675060 MtrunA17_Chr5g0412271 55.714 70 30 1 1 70 1 69 5.93e-22 85.5
Msa0675060 MtrunA17_Chr5g0412461 55.714 70 30 1 1 70 1 69 6.62e-22 85.5
Msa0675060 MtrunA17_Chr4g0049901 56.522 69 29 1 1 69 27 94 9.86e-22 85.1
Msa0675060 MtrunA17_Chr3g0125241 44.706 85 46 1 1 84 26 110 1.23e-21 84.3
Msa0675060 MtrunA17_Chr3g0142191 50.704 71 34 1 1 70 1 71 1.45e-21 84.3
Msa0675060 MtrunA17_Chr5g0404951 50.685 73 35 1 1 72 1 73 4.12e-21 83.2
Msa0675060 MtrunA17_Chr1g0159661 45.333 75 40 1 1 74 1 75 3.47e-20 79.7
Msa0675060 MtrunA17_Chr3g0134451 46.575 73 39 0 1 73 1 73 1.73e-18 77.8
Msa0675060 MtrunA17_Chr4g0044071 53.333 60 28 0 1 60 1 60 8.49e-18 72.0
Msa0675060 MtrunA17_Chr1g0166611 44.737 76 42 0 13 88 17 92 1.75e-17 71.6
Msa0675060 MtrunA17_Chr5g0425191 53.333 60 28 0 1 60 1 60 3.34e-17 70.1
Msa0675060 MtrunA17_Chr8g0357771 56.364 55 24 0 1 55 1 55 1.04e-15 68.2
Msa0675060 MtrunA17_Chr8g0376821 41.667 84 46 2 1 84 1 81 1.57e-15 67.8
Msa0675060 MtrunA17_Chr1g0180591 43.836 73 40 1 1 73 1 72 3.40e-15 67.0
Msa0675060 MtrunA17_Chr2g0325971 43.478 69 38 1 3 71 10 77 8.49e-15 66.6
Msa0675060 MtrunA17_Chr1g0169761 44.444 72 39 1 1 72 1 71 9.75e-15 65.5
Msa0675060 MtrunA17_Chr1g0175611 43.836 73 40 1 1 73 1 72 1.95e-14 64.7
Msa0675060 MtrunA17_Chr4g0074101 44.444 72 39 1 1 72 1 71 2.06e-14 65.1
Msa0675060 MtrunA17_Chr4g0060841 41.333 75 43 1 1 74 1 75 4.92e-14 65.5
Msa0675060 MtrunA17_Chr4g0052081 40.845 71 41 1 1 71 1 70 6.22e-14 63.5
Msa0675060 MtrunA17_Chr4g0052061 39.474 76 45 1 1 76 1 75 7.00e-14 63.2
Msa0675060 MtrunA17_Chr3g0089141 41.429 70 40 1 2 71 9 77 9.22e-14 63.9
Msa0675060 MtrunA17_Chr1g0208561 41.429 70 40 1 2 71 9 77 9.61e-14 63.9
Msa0675060 MtrunA17_Chr1g0175601 45.902 61 33 0 1 61 1 61 2.47e-13 62.0
Msa0675060 MtrunA17_Chr5g0417661 50.943 53 26 0 1 53 56 108 2.83e-13 60.8
Msa0675060 MtrunA17_Chr1g0206991 40.000 70 41 1 2 71 9 77 3.30e-13 61.6
Msa0675060 MtrunA17_Chr5g0419601 36.905 84 51 2 1 84 8 89 3.32e-13 62.4
Msa0675060 MtrunA17_Chr3g0099421 40.580 69 40 1 3 71 35 102 3.53e-13 62.8
Msa0675060 MtrunA17_Chr2g0333981 35.632 87 55 1 1 87 11 96 3.53e-13 61.6
Msa0675060 MtrunA17_Chr2g0292791 42.029 69 39 1 3 71 10 77 3.57e-13 62.4
Msa0675060 MtrunA17_Chr1g0206701 40.000 70 41 1 2 71 9 77 5.01e-13 62.0
Msa0675060 MtrunA17_Chr8g0355091 40.000 70 41 1 2 71 9 77 5.79e-13 62.0
Msa0675060 MtrunA17_Chr3g0099411 40.000 70 41 1 2 71 9 77 1.14e-12 60.8
Msa0675060 MtrunA17_Chr1g0188671 40.000 70 41 1 2 71 47 115 1.23e-12 61.2
Msa0675060 MtrunA17_Chr1g0149391 40.000 70 41 1 2 71 9 77 1.35e-12 60.8
Msa0675060 MtrunA17_Chr2g0317481 41.429 70 40 1 2 71 9 77 1.40e-12 60.8
Msa0675060 MtrunA17_Chr2g0317451 41.429 70 40 1 2 71 9 77 1.45e-12 60.8
Msa0675060 MtrunA17_Chr1g0206721 40.000 70 41 1 2 71 9 77 1.48e-12 60.8
Msa0675060 MtrunA17_Chr8g0379021 38.356 73 44 1 2 74 12 83 1.53e-12 59.7
Msa0675060 MtrunA17_Chr1g0208581 38.571 70 42 1 2 71 9 77 2.17e-12 60.1
Msa0675060 MtrunA17_Chr3g0119901 40.845 71 41 1 1 71 8 77 2.65e-12 59.7
Msa0675060 MtrunA17_Chr8g0356071 40.278 72 42 1 1 72 1 71 2.99e-12 58.9
Msa0675060 MtrunA17_Chr1g0187361 40.000 70 41 1 2 71 9 77 3.97e-12 59.7
Msa0675060 MtrunA17_Chr4g0018951 62.500 40 15 0 16 55 26 65 6.10e-12 58.2
Msa0675060 MtrunA17_Chr3g0085241 38.272 81 47 2 1 81 40 117 7.79e-12 58.9
Msa0675060 MtrunA17_Chr5g0422941 40.000 70 41 1 2 71 9 77 1.11e-11 58.5
Msa0675060 MtrunA17_Chr5g0422421 40.000 70 41 1 2 71 9 77 1.13e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0675060 AT1G71692.1 82.895 76 13 0 1 76 1 76 6.31e-42 136
Msa0675060 AT3G58780.1 59.302 86 33 2 1 85 16 100 9.35e-29 103
Msa0675060 AT1G69120.2 60.811 74 29 0 1 74 1 74 1.01e-28 103
Msa0675060 AT3G58780.5 59.302 86 33 2 1 85 22 106 1.04e-28 103
Msa0675060 AT2G14210.1 62.857 70 26 0 1 70 1 70 1.18e-28 103
Msa0675060 AT2G45660.2 60.976 82 28 2 1 79 1 81 1.19e-28 101
Msa0675060 AT2G14210.2 62.857 70 26 0 1 70 1 70 1.57e-28 102
Msa0675060 AT3G58780.4 59.302 86 33 2 1 85 16 100 1.90e-28 103
Msa0675060 AT2G42830.2 58.140 86 34 2 1 85 16 100 1.96e-28 103
Msa0675060 AT2G42830.1 58.140 86 34 2 1 85 16 100 2.09e-28 102
Msa0675060 AT1G69120.1 60.811 74 29 0 1 74 1 74 2.89e-28 102
Msa0675060 AT5G60910.1 58.904 73 30 0 1 73 1 73 3.66e-28 102
Msa0675060 AT2G45660.1 60.976 82 28 2 1 79 1 81 4.75e-28 101
Msa0675060 AT5G62165.14 57.895 76 31 1 1 76 1 75 2.19e-27 96.7
Msa0675060 AT1G24260.3 54.839 93 41 1 1 93 1 92 2.63e-27 99.8
Msa0675060 AT1G24260.2 54.839 93 41 1 1 93 1 92 3.44e-27 99.8
Msa0675060 AT4G09960.2 61.111 72 27 1 1 72 1 71 4.99e-27 98.6
Msa0675060 AT1G24260.1 56.977 86 36 1 1 86 1 85 5.28e-27 99.4
Msa0675060 AT5G62165.17 57.895 76 31 1 1 76 1 75 5.64e-27 97.1
Msa0675060 AT5G62165.12 57.895 76 31 1 1 76 1 75 5.64e-27 97.1
Msa0675060 AT5G62165.11 57.895 76 31 1 1 76 1 75 5.64e-27 97.1
Msa0675060 AT3G02310.2 58.442 77 32 0 1 77 1 77 6.89e-27 97.8
Msa0675060 AT4G09960.1 61.111 72 27 1 1 72 1 71 7.39e-27 98.6
Msa0675060 AT1G26310.1 55.405 74 33 0 1 74 1 74 7.70e-27 99.0
Msa0675060 AT4G09960.6 61.111 72 27 1 1 72 2 72 7.88e-27 98.6
Msa0675060 AT5G62165.6 55.696 79 34 1 1 79 1 78 9.65e-27 96.3
Msa0675060 AT5G62165.9 55.696 79 34 1 1 79 1 78 9.65e-27 96.3
Msa0675060 AT5G62165.7 55.696 79 34 1 1 79 1 78 9.65e-27 96.3
Msa0675060 AT5G62165.8 55.696 79 34 1 1 79 1 78 9.65e-27 96.3
Msa0675060 AT5G62165.13 55.696 79 34 1 1 79 1 78 9.65e-27 96.3
Msa0675060 AT4G09960.5 61.111 72 27 1 1 72 11 81 1.06e-26 98.6
Msa0675060 AT4G09960.3 61.111 72 27 1 1 72 27 97 1.82e-26 98.2
Msa0675060 AT5G62165.10 57.895 76 31 1 1 76 1 75 2.08e-26 96.7
Msa0675060 AT5G62165.4 57.895 76 31 1 1 76 1 75 2.08e-26 96.7
Msa0675060 AT5G15800.1 58.442 77 32 0 1 77 1 77 2.14e-26 97.8
Msa0675060 AT5G62165.3 57.895 76 31 1 1 76 1 75 2.39e-26 96.7
Msa0675060 AT5G62165.1 57.895 76 31 1 1 76 1 75 2.39e-26 96.7
Msa0675060 AT5G62165.2 57.895 76 31 1 1 76 1 75 2.39e-26 96.7
Msa0675060 AT4G18960.1 60.563 71 27 1 2 72 18 87 2.43e-26 97.8
Msa0675060 AT2G03710.3 61.538 78 29 1 1 77 1 78 2.79e-26 95.9
Msa0675060 AT5G15800.2 58.442 77 32 0 1 77 1 77 3.07e-26 97.8
Msa0675060 AT3G57230.2 49.425 87 39 2 1 87 1 82 4.36e-26 94.4
Msa0675060 AT3G02310.1 58.442 77 32 0 1 77 1 77 4.47e-26 97.1
Msa0675060 AT4G11880.2 59.722 72 29 0 1 72 1 72 5.95e-26 95.1
Msa0675060 AT4G11880.3 59.722 72 29 0 1 72 1 72 5.95e-26 95.1
Msa0675060 AT3G30260.1 58.571 70 29 0 1 70 1 70 6.17e-26 96.7
Msa0675060 AT2G03710.2 61.538 78 29 1 1 77 1 78 7.12e-26 96.7
Msa0675060 AT2G03710.1 61.538 78 29 1 1 77 1 78 7.18e-26 96.7
Msa0675060 AT2G45650.1 52.809 89 37 2 1 85 1 88 7.76e-26 96.3
Msa0675060 AT4G11880.4 59.722 72 29 0 1 72 1 72 1.15e-25 95.1
Msa0675060 AT4G11880.1 59.722 72 29 0 1 72 1 72 1.15e-25 95.1
Msa0675060 AT4G37940.3 56.944 72 30 1 1 72 1 71 1.96e-25 93.6
Msa0675060 AT3G57230.1 49.425 87 39 2 1 87 1 82 3.85e-25 94.4
Msa0675060 AT3G57230.4 49.425 87 39 2 1 87 1 82 3.85e-25 94.4
Msa0675060 AT4G37940.4 56.944 72 30 1 1 72 1 71 4.09e-25 93.6
Msa0675060 AT3G58780.2 55.814 86 29 2 1 85 16 93 4.14e-25 94.4
Msa0675060 AT4G37940.1 56.944 72 30 1 1 72 1 71 4.68e-25 94.0
Msa0675060 AT3G58780.3 46.364 110 34 2 1 85 16 125 9.42e-25 94.0
Msa0675060 AT4G22950.2 61.429 70 26 1 1 70 1 69 3.00e-24 90.5
Msa0675060 AT3G61120.1 61.111 72 27 1 1 72 1 71 5.55e-24 91.3
Msa0675060 AT5G13790.2 60.606 66 26 0 1 66 1 66 8.49e-24 91.7
Msa0675060 AT5G13790.1 60.606 66 26 0 1 66 1 66 8.60e-24 91.3
Msa0675060 AT4G22950.3 61.429 70 26 1 1 70 1 69 1.32e-23 89.7
Msa0675060 AT4G22950.1 61.429 70 26 1 1 70 1 69 1.32e-23 89.7
Msa0675060 AT4G09960.4 61.111 72 27 1 1 72 96 166 2.97e-23 90.9
Msa0675060 AT5G51870.2 50.000 76 37 1 1 76 1 75 3.24e-23 87.8
Msa0675060 AT5G51870.1 51.351 74 35 1 1 74 1 73 8.88e-23 87.4
Msa0675060 AT5G51870.5 50.000 76 37 1 1 76 24 98 9.18e-23 87.0
Msa0675060 AT5G23260.3 56.944 72 30 1 1 71 1 72 1.26e-22 87.8
Msa0675060 AT5G23260.2 56.944 72 30 1 1 71 1 72 1.32e-22 88.2
Msa0675060 AT5G51860.2 52.000 75 35 1 1 75 1 74 1.37e-22 87.0
Msa0675060 AT5G51870.4 50.000 76 37 1 1 76 1 75 1.58e-22 87.0
Msa0675060 AT5G23260.4 56.944 72 30 1 1 71 17 88 1.67e-22 88.2
Msa0675060 AT5G23260.1 56.944 72 30 1 1 71 17 88 1.73e-22 87.8
Msa0675060 AT5G51860.1 52.000 75 35 1 1 75 1 74 2.02e-22 86.7
Msa0675060 AT5G51870.3 51.351 74 35 1 1 74 11 83 2.02e-22 87.0
Msa0675060 AT3G57390.3 45.652 92 47 2 1 92 1 89 3.61e-22 86.3
Msa0675060 AT2G22540.3 55.714 70 30 1 1 70 1 69 4.54e-22 86.3
Msa0675060 AT2G22540.1 55.714 70 30 1 1 70 1 69 4.54e-22 86.3
Msa0675060 AT5G65070.4 48.571 70 36 0 1 70 1 70 5.89e-22 84.0
Msa0675060 AT3G57390.1 45.652 92 47 2 1 92 1 89 6.72e-22 86.3
Msa0675060 AT5G65070.1 48.571 70 36 0 1 70 1 70 2.06e-21 84.0
Msa0675060 AT2G22540.2 63.158 57 21 0 1 57 1 57 3.26e-21 84.0
Msa0675060 AT5G65070.5 48.571 70 36 0 1 70 1 70 3.56e-21 83.6
Msa0675060 AT5G65070.2 48.571 70 36 0 1 70 1 70 5.33e-21 83.6
Msa0675060 AT4G24540.1 52.857 70 32 1 1 70 1 69 8.26e-21 82.8
Msa0675060 AT3G54340.1 56.452 62 27 0 1 62 1 62 1.03e-20 82.8
Msa0675060 AT5G65050.2 48.571 70 36 0 1 70 1 70 1.33e-20 81.3
Msa0675060 AT5G10140.2 48.571 70 36 0 1 70 1 70 1.60e-20 80.9
Msa0675060 AT5G10140.3 48.571 70 36 0 1 70 1 70 2.09e-20 80.9
Msa0675060 AT5G10140.4 48.571 70 36 0 1 70 1 70 3.15e-20 80.5
Msa0675060 AT5G65080.3 43.902 82 45 1 1 82 8 88 3.17e-20 80.5
Msa0675060 AT5G65060.3 50.000 70 35 0 1 70 1 70 3.41e-20 80.5
Msa0675060 AT5G10140.1 48.571 70 36 0 1 70 1 70 3.43e-20 80.5
Msa0675060 AT5G65050.1 48.571 70 36 0 1 70 1 70 3.58e-20 80.1
Msa0675060 AT5G65050.3 48.571 70 36 0 1 70 1 70 4.25e-20 80.5
Msa0675060 AT5G65050.5 48.571 70 36 0 1 70 1 70 4.53e-20 80.1
Msa0675060 AT5G65060.1 50.000 70 35 0 1 70 1 70 4.53e-20 80.1
Msa0675060 AT5G65060.2 50.000 70 35 0 1 70 1 70 4.63e-20 80.1
Msa0675060 AT2G22630.1 51.429 70 33 1 1 70 1 69 4.92e-20 80.9
Msa0675060 AT2G22630.2 51.429 70 33 1 1 70 1 69 4.92e-20 80.9
Msa0675060 AT5G20240.2 46.667 75 39 1 1 74 1 75 2.98e-19 77.0
Msa0675060 AT5G65070.3 54.237 59 27 0 1 59 1 59 6.52e-19 77.8
Msa0675060 AT5G20240.1 46.667 75 39 1 1 74 1 75 8.41e-19 77.0
Msa0675060 AT1G31140.1 48.052 77 39 1 1 76 1 77 1.05e-17 74.3
Msa0675060 AT1G31140.2 48.052 77 39 1 1 76 1 77 1.08e-17 74.3
Msa0675060 AT1G77980.1 41.463 82 48 0 1 82 1 82 4.32e-17 74.3
Msa0675060 AT5G65080.2 52.542 59 28 0 1 59 8 66 4.45e-17 72.8
Msa0675060 AT1G22130.1 40.244 82 49 0 1 82 1 82 1.08e-16 73.2
Msa0675060 AT1G72350.1 47.887 71 34 1 2 72 43 110 1.88e-15 68.6
Msa0675060 AT1G77080.11 45.714 70 38 0 1 70 1 70 3.23e-15 67.4
Msa0675060 AT1G77080.5 45.714 70 38 0 1 70 1 70 5.10e-15 66.6
Msa0675060 AT1G77080.4 45.714 70 38 0 1 70 1 70 7.60e-15 66.6
Msa0675060 AT1G77080.8 45.714 70 38 0 1 70 1 70 1.27e-14 66.6
Msa0675060 AT1G77950.3 36.585 82 52 0 1 82 1 82 1.62e-14 66.6
Msa0675060 AT1G77950.2 36.585 82 52 0 1 82 1 82 1.62e-14 66.6
Msa0675060 AT1G77950.1 36.585 82 52 0 1 82 1 82 1.62e-14 66.6
Msa0675060 AT1G77950.4 36.585 82 52 0 1 82 1 82 1.62e-14 66.6
Msa0675060 AT2G34440.1 41.667 72 41 1 1 72 1 71 1.96e-14 65.1
Msa0675060 AT2G03060.3 44.000 75 41 1 1 74 1 75 5.82e-14 65.9
Msa0675060 AT2G03060.7 44.000 75 41 1 1 74 1 75 5.82e-14 65.9
Msa0675060 AT2G03060.1 44.000 75 41 1 1 74 1 75 5.82e-14 65.9
Msa0675060 AT2G03060.2 44.000 75 41 1 1 74 1 75 5.87e-14 65.9
Msa0675060 AT4G37435.1 43.662 71 40 0 1 71 1 71 6.98e-14 63.9
Msa0675060 AT3G66656.1 46.552 58 31 0 1 58 1 58 9.34e-14 63.5
Msa0675060 AT1G18750.3 41.333 75 43 1 1 74 1 75 9.60e-14 65.5
Msa0675060 AT1G18750.4 41.333 75 43 1 1 74 1 75 1.07e-13 65.1
Msa0675060 AT2G24840.1 42.254 71 40 1 1 71 62 131 1.15e-13 64.3
Msa0675060 AT1G77080.12 46.269 67 36 0 1 67 1 67 1.26e-13 62.4
Msa0675060 AT1G18750.1 41.333 75 43 1 1 74 1 75 1.35e-13 65.1
Msa0675060 AT1G01530.1 48.276 58 30 0 1 58 6 63 1.60e-13 63.9
Msa0675060 AT1G77080.2 46.269 67 36 0 1 67 1 67 2.67e-13 62.4
Msa0675060 AT1G69540.1 39.189 74 45 0 1 74 1 74 6.42e-13 62.8
Msa0675060 AT1G69540.2 39.189 74 45 0 1 74 1 74 6.73e-13 62.8
Msa0675060 AT4G36590.1 43.478 69 38 1 2 70 7 74 3.96e-12 60.1
Msa0675060 AT1G65360.1 43.103 58 33 0 1 58 6 63 1.73e-11 58.2
Msa0675060 AT3G04100.1 35.294 85 53 2 5 89 17 99 2.43e-11 57.4
Msa0675060 AT5G60440.1 43.860 57 32 0 2 58 7 63 2.92e-11 58.2

Find 24 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGCTTCAGTTACAGCTTC+AGG 0.305131 4_4:-23305533 None:intergenic
GTGCTTTGCGATGCTGAAAT+TGG 0.317759 4_4:+23304962 Msa0675060:CDS
AAAGTCACTTGCCTGTGCAC+TGG 0.436750 4_4:-23304893 None:intergenic
AAGTCACTTGCCTGTGCACT+GGG 0.471642 4_4:-23304892 None:intergenic
ACTTTCTGTAAGCGCCGAGC+GGG 0.485647 4_4:+23304911 Msa0675060:CDS
CCGAGCGGGGCTTCTAAAGA+AGG 0.488715 4_4:+23304925 Msa0675060:CDS
CTCTATGAACTCGCCACCAA+AGG 0.491747 4_4:+23305013 Msa0675060:CDS
CTTCTCTATTAGCCCTTGCA+TGG 0.492434 4_4:-23305483 None:intergenic
TGAAGCACGTCCTCTTGTAT+TGG 0.509803 4_4:+23305547 Msa0675060:CDS
TTCATAGAGCTTTCCATGAG+CGG 0.532053 4_4:-23304999 None:intergenic
AATCGACATGGCTCGCGGGA+AGG 0.534307 4_4:+23304847 None:intergenic
CCTTCTTTAGAAGCCCCGCT+CGG 0.544771 4_4:-23304925 None:intergenic
TCTATGAACTCGCCACCAAA+GGG 0.554348 4_4:+23305014 Msa0675060:CDS
GAATTGAGAACCCAGTGCAC+AGG 0.556607 4_4:+23304882 Msa0675060:CDS
ATGAAATGAAGAACCATGCA+AGG 0.564040 4_4:+23305470 Msa0675060:intron
GGGGCTTCTAAAGAAGGCTA+AGG 0.573499 4_4:+23304931 Msa0675060:CDS
AAAAGAGACATACCCTTTGG+TGG 0.593726 4_4:-23305026 None:intergenic
CTCGCGGGAAGGTTCAGCTA+AGG 0.601343 4_4:+23304858 Msa0675060:CDS
CTTTCTGTAAGCGCCGAGCG+GGG 0.616522 4_4:+23304912 Msa0675060:CDS
TAGAGACATACCAATACAAG+AGG 0.623099 4_4:-23305557 None:intergenic
TGAAATGAAGAACCATGCAA+GGG 0.639061 4_4:+23305471 Msa0675060:intron
GACTTTCTGTAAGCGCCGAG+CGG 0.650769 4_4:+23304910 Msa0675060:CDS
AAGTACTTGAAGTTCACACG+AGG 0.730119 4_4:+23305503 Msa0675060:CDS
AGTACTTGAAGTTCACACGA+GGG 0.748606 4_4:+23305504 Msa0675060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATATATTGCAAAGTTTTG+CGG - chr4_4:23305131-23305150 None:intergenic 25.0%
! ATGTAAAGTTAAGCAATGTA+CGG - chr4_4:23305205-23305224 None:intergenic 25.0%
! GAAATCCAAACAAATATGTT+TGG + chr4_4:23305243-23305262 Msa0675060:intron 25.0%
! GAAATCCAAACATATTTGTT+TGG - chr4_4:23305251-23305270 None:intergenic 25.0%
! TTTAGGGTTATGCAAATGAT+CGG - chr4_4:23305084-23305103 None:intergenic 30.0%
CGCAAAACTTTGCAATATAT+AGG + chr4_4:23305129-23305148 Msa0675060:intron 30.0%
TGCATCATACATAGTGTTAT+AGG - chr4_4:23305273-23305292 None:intergenic 30.0%
! ATTTAGAGCTCTACATTGTA+GGG + chr4_4:23305377-23305396 Msa0675060:intron 30.0%
! ATAGCCCATCAAGTTTATTT+TGG + chr4_4:23305404-23305423 Msa0675060:intron 30.0%
GTGACCAAAATAAACTTGAT+GGG - chr4_4:23305411-23305430 None:intergenic 30.0%
AGTGACCAAAATAAACTTGA+TGG - chr4_4:23305412-23305431 None:intergenic 30.0%
GAAAAAAGAGACATACCCTT+TGG - chr4_4:23305032-23305051 None:intergenic 35.0%
TACACACACTACATCGTTTA+GGG - chr4_4:23305100-23305119 None:intergenic 35.0%
TTACACACACTACATCGTTT+AGG - chr4_4:23305101-23305120 None:intergenic 35.0%
TTTACATATAACCAGCGTAG+CGG + chr4_4:23305218-23305237 Msa0675060:intron 35.0%
!! AGCTCTAAATGCATTGAGTA+CGG - chr4_4:23305367-23305386 None:intergenic 35.0%
! CATTTAGAGCTCTACATTGT+AGG + chr4_4:23305376-23305395 Msa0675060:intron 35.0%
ATGAAATGAAGAACCATGCA+AGG + chr4_4:23305470-23305489 Msa0675060:intron 35.0%
TGAAATGAAGAACCATGCAA+GGG + chr4_4:23305471-23305490 Msa0675060:intron 35.0%
TAGAGACATACCAATACAAG+AGG - chr4_4:23305560-23305579 None:intergenic 35.0%
TTCATAGAGCTTTCCATGAG+CGG - chr4_4:23305002-23305021 None:intergenic 40.0%
AAAAGAGACATACCCTTTGG+TGG - chr4_4:23305029-23305048 None:intergenic 40.0%
AGACTTCAGAGGATCTATAG+TGG + chr4_4:23305330-23305349 Msa0675060:intron 40.0%
! GCTCTAAATGCATTGAGTAC+GGG - chr4_4:23305366-23305385 None:intergenic 40.0%
AAGTACTTGAAGTTCACACG+AGG + chr4_4:23305503-23305522 Msa0675060:CDS 40.0%
AGTACTTGAAGTTCACACGA+GGG + chr4_4:23305504-23305523 Msa0675060:CDS 40.0%
GTGCTTTGCGATGCTGAAAT+TGG + chr4_4:23304962-23304981 Msa0675060:CDS 45.0%
!!! CTTGTCATTTTCTCCGCTCA+TGG + chr4_4:23304986-23305005 Msa0675060:CDS 45.0%
TCTATGAACTCGCCACCAAA+GGG + chr4_4:23305014-23305033 Msa0675060:CDS 45.0%
! TTGCAAAGTTTTGCGGTGCA+CGG - chr4_4:23305124-23305143 None:intergenic 45.0%
GCATATAGTGCAGACTTCAG+AGG + chr4_4:23305319-23305338 Msa0675060:intron 45.0%
CTTCTCTATTAGCCCTTGCA+TGG - chr4_4:23305486-23305505 None:intergenic 45.0%
TGAAGCACGTCCTCTTGTAT+TGG + chr4_4:23305547-23305566 Msa0675060:CDS 45.0%
GAATTGAGAACCCAGTGCAC+AGG + chr4_4:23304882-23304901 Msa0675060:CDS 50.0%
AAGTCACTTGCCTGTGCACT+GGG - chr4_4:23304895-23304914 None:intergenic 50.0%
AAAGTCACTTGCCTGTGCAC+TGG - chr4_4:23304896-23304915 None:intergenic 50.0%
! GGGGCTTCTAAAGAAGGCTA+AGG + chr4_4:23304931-23304950 Msa0675060:CDS 50.0%
CTCTATGAACTCGCCACCAA+AGG + chr4_4:23305013-23305032 Msa0675060:CDS 50.0%
TTGGATTTCATCCGCTACGC+TGG - chr4_4:23305232-23305251 None:intergenic 50.0%
CGTGCTTCAGTTACAGCTTC+AGG - chr4_4:23305536-23305555 None:intergenic 50.0%
!! GACTTTCTGTAAGCGCCGAG+CGG + chr4_4:23304910-23304929 Msa0675060:CDS 55.0%
!! ACTTTCTGTAAGCGCCGAGC+GGG + chr4_4:23304911-23304930 Msa0675060:CDS 55.0%
! CCTTCTTTAGAAGCCCCGCT+CGG - chr4_4:23304928-23304947 None:intergenic 55.0%
CTCGCGGGAAGGTTCAGCTA+AGG + chr4_4:23304858-23304877 Msa0675060:CDS 60.0%
!! CTTTCTGTAAGCGCCGAGCG+GGG + chr4_4:23304912-23304931 Msa0675060:CDS 60.0%
! CCGAGCGGGGCTTCTAAAGA+AGG + chr4_4:23304925-23304944 Msa0675060:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 23304854 23305580 23304854 ID=Msa0675060;Name=Msa0675060
chr4_4 mRNA 23304854 23305580 23304854 ID=Msa0675060-mRNA-1;Parent=Msa0675060;Name=Msa0675060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|93
chr4_4 exon 23304854 23305035 23304854 ID=Msa0675060-mRNA-1:exon:6496;Parent=Msa0675060-mRNA-1
chr4_4 exon 23305481 23305580 23305481 ID=Msa0675060-mRNA-1:exon:6497;Parent=Msa0675060-mRNA-1
chr4_4 CDS 23304854 23305035 23304854 ID=Msa0675060-mRNA-1:cds;Parent=Msa0675060-mRNA-1
chr4_4 CDS 23305481 23305580 23305481 ID=Msa0675060-mRNA-1:cds;Parent=Msa0675060-mRNA-1
Gene Sequence

>Msa0675060

ATGGCTCGCGGGAAGGTTCAGCTAAGGAGAATTGAGAACCCAGTGCACAGGCAAGTGACTTTCTGTAAGCGCCGAGCGGGGCTTCTAAAGAAGGCTAAGGAGCTCTCTGTGCTTTGCGATGCTGAAATTGGTCTTGTCATTTTCTCCGCTCATGGAAAGCTCTATGAACTCGCCACCAAAGGAACCATGCAAGGGCTAATAGAGAAGTACTTGAAGTTCACACGAGGGACTCAACCTGAAGCTGTAACTGAAGCACGTCCTCTTGTATTGGTATGTCTCTAG
Protein sequence

>Msa0675060

MARGKVQLRRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLVIFSAHGKLYELATKGTMQGLIEKYLKFTRGTQPEAVTEARPLVLVCL*