Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675500 | XP_039690067.1 | 76.923 | 416 | 73 | 7 | 1 | 406 | 1 | 403 | 0.0 | 623 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675500 | sp|Q8L3W1|VRN1_ARATH | 25.526 | 333 | 198 | 9 | 7 | 289 | 4 | 336 | 6.99e-19 | 90.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675500 | A0A072VFJ7 | 76.923 | 416 | 73 | 7 | 1 | 406 | 1 | 403 | 0.0 | 623 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0675500 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675500 | MtrunA17_Chr1g0163181 | 69.213 | 445 | 87 | 8 | 1 | 404 | 1 | 436 | 0.0 | 599 |
| Msa0675500 | MtrunA17_Chr1g0163201 | 76.322 | 397 | 71 | 7 | 20 | 406 | 18 | 401 | 0.0 | 586 |
| Msa0675500 | MtrunA17_Chr1g0163251 | 55.060 | 336 | 116 | 5 | 1 | 330 | 1 | 307 | 1.14e-118 | 351 |
| Msa0675500 | MtrunA17_Chr1g0163151 | 71.179 | 229 | 54 | 4 | 175 | 398 | 1 | 222 | 1.06e-109 | 322 |
| Msa0675500 | MtrunA17_Chr1g0163111 | 64.315 | 241 | 59 | 5 | 175 | 399 | 1 | 230 | 1.95e-99 | 296 |
| Msa0675500 | MtrunA17_Chr1g0163261 | 46.667 | 315 | 132 | 8 | 1 | 301 | 1 | 293 | 1.67e-83 | 258 |
| Msa0675500 | MtrunA17_Chr1g0163231 | 48.039 | 306 | 121 | 12 | 1 | 292 | 1 | 282 | 1.48e-79 | 247 |
| Msa0675500 | MtrunA17_Chr1g0171611 | 48.366 | 306 | 108 | 10 | 1 | 292 | 1 | 270 | 3.23e-79 | 246 |
| Msa0675500 | MtrunA17_Chr1g0163191 | 74.691 | 162 | 38 | 2 | 1 | 160 | 1 | 161 | 1.08e-69 | 217 |
| Msa0675500 | MtrunA17_Chr1g0163241 | 63.372 | 172 | 44 | 4 | 1 | 169 | 7 | 162 | 1.46e-63 | 201 |
| Msa0675500 | MtrunA17_Chr1g0162151 | 40.870 | 230 | 112 | 5 | 175 | 400 | 1 | 210 | 7.18e-42 | 147 |
| Msa0675500 | MtrunA17_Chr6g0476171 | 41.860 | 215 | 109 | 8 | 194 | 396 | 34 | 244 | 2.31e-41 | 146 |
| Msa0675500 | MtrunA17_Chr1g0208771 | 26.419 | 458 | 243 | 13 | 20 | 396 | 12 | 456 | 8.28e-35 | 134 |
| Msa0675500 | MtrunA17_Chr1g0163091 | 41.096 | 146 | 80 | 2 | 175 | 316 | 1 | 144 | 1.32e-32 | 120 |
| Msa0675500 | MtrunA17_Chr1g0163131 | 31.597 | 288 | 176 | 11 | 14 | 288 | 27 | 306 | 4.27e-30 | 118 |
| Msa0675500 | MtrunA17_Chr1g0163131 | 55.263 | 76 | 30 | 2 | 323 | 396 | 232 | 305 | 3.79e-17 | 81.6 |
| Msa0675500 | MtrunA17_Chr7g0233521 | 29.537 | 281 | 167 | 8 | 21 | 289 | 2 | 263 | 9.80e-30 | 116 |
| Msa0675500 | MtrunA17_Chr8g0390841 | 30.201 | 298 | 172 | 10 | 14 | 289 | 48 | 331 | 6.69e-29 | 118 |
| Msa0675500 | MtrunA17_Chr7g0233561 | 29.022 | 317 | 167 | 11 | 9 | 289 | 18 | 312 | 1.24e-28 | 114 |
| Msa0675500 | MtrunA17_Chr3g0103171 | 27.046 | 281 | 171 | 8 | 20 | 287 | 5 | 264 | 3.81e-28 | 111 |
| Msa0675500 | MtrunA17_Chr3g0131891 | 29.758 | 289 | 177 | 8 | 14 | 289 | 28 | 303 | 5.58e-28 | 112 |
| Msa0675500 | MtrunA17_Chr7g0233541 | 28.387 | 310 | 180 | 9 | 21 | 304 | 2 | 295 | 8.14e-28 | 111 |
| Msa0675500 | MtrunA17_Chr1g0163101 | 40.741 | 162 | 73 | 6 | 14 | 169 | 26 | 170 | 1.56e-26 | 105 |
| Msa0675500 | MtrunA17_Chr1g0162161 | 39.873 | 158 | 68 | 7 | 21 | 169 | 4 | 143 | 7.42e-26 | 102 |
| Msa0675500 | MtrunA17_Chr3g0103181 | 26.159 | 302 | 165 | 11 | 9 | 287 | 12 | 278 | 6.67e-23 | 97.8 |
| Msa0675500 | MtrunA17_Chr1g0163221 | 25.381 | 394 | 226 | 16 | 14 | 396 | 20 | 356 | 1.03e-22 | 98.6 |
| Msa0675500 | MtrunA17_Chr1g0163071 | 25.342 | 292 | 189 | 6 | 21 | 289 | 2 | 287 | 4.01e-22 | 95.9 |
| Msa0675500 | MtrunA17_Chr6g0476181 | 37.821 | 156 | 71 | 5 | 21 | 171 | 2 | 136 | 4.03e-22 | 92.4 |
| Msa0675500 | MtrunA17_Chr1g0163121 | 45.455 | 110 | 55 | 3 | 19 | 124 | 9 | 117 | 4.88e-22 | 91.7 |
| Msa0675500 | MtrunA17_Chr4g0067431 | 28.155 | 309 | 179 | 12 | 9 | 287 | 15 | 310 | 7.39e-22 | 95.5 |
| Msa0675500 | MtrunA17_Chr7g0233531 | 28.772 | 285 | 164 | 9 | 21 | 289 | 2 | 263 | 1.81e-20 | 90.9 |
| Msa0675500 | MtrunA17_Chr1g0163141 | 36.943 | 157 | 86 | 5 | 17 | 171 | 7 | 152 | 8.76e-19 | 84.0 |
| Msa0675500 | MtrunA17_Chr1g0163081 | 37.705 | 122 | 69 | 4 | 21 | 138 | 6 | 124 | 1.01e-18 | 82.4 |
| Msa0675500 | MtrunA17_Chr7g0233571 | 31.977 | 172 | 91 | 4 | 14 | 181 | 19 | 168 | 1.37e-16 | 78.6 |
| Msa0675500 | MtrunA17_Chr3g0103151 | 34.921 | 126 | 73 | 5 | 9 | 128 | 12 | 134 | 2.59e-16 | 76.3 |
| Msa0675500 | MtrunA17_Chr3g0103191 | 26.848 | 257 | 154 | 11 | 9 | 254 | 12 | 245 | 4.10e-16 | 77.8 |
| Msa0675500 | MtrunA17_Chr1g0163161 | 35.616 | 146 | 67 | 6 | 33 | 169 | 1 | 128 | 1.39e-15 | 73.2 |
| Msa0675500 | MtrunA17_Chr5g0419201 | 37.895 | 95 | 55 | 2 | 14 | 104 | 25 | 119 | 2.01e-15 | 74.3 |
| Msa0675500 | MtrunA17_Chr6g0467351 | 35.135 | 111 | 67 | 3 | 13 | 118 | 23 | 133 | 4.54e-14 | 71.2 |
| Msa0675500 | MtrunA17_Chr4g0033961 | 32.593 | 135 | 79 | 5 | 7 | 129 | 4 | 138 | 5.38e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675500 | AT3G18990.2 | 25.526 | 333 | 198 | 9 | 7 | 289 | 4 | 336 | 5.55e-20 | 91.3 |
| Msa0675500 | AT3G18990.1 | 25.526 | 333 | 198 | 9 | 7 | 289 | 4 | 336 | 7.11e-20 | 90.5 |
Find 71 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAGGTTGGTTCGTTTC+TGG | 0.065597 | 4_4:-24587236 | None:intergenic |
| GTGTTCAACAAGAAATATTT+TGG | 0.156532 | 4_4:+24586041 | Msa0675500:CDS |
| GAACACCGTTTGGGAATTTA+AGG | 0.181202 | 4_4:-24586024 | None:intergenic |
| TTTGCCAAGTTTCTGAAATA+TGG | 0.185660 | 4_4:+24586109 | Msa0675500:CDS |
| ATTATCTGTTTGTTCTAATA+AGG | 0.215815 | 4_4:+24588272 | Msa0675500:CDS |
| GACATTATAATTTCAAAATA+AGG | 0.216590 | 4_4:-24586862 | None:intergenic |
| ATAGTAACATTGAATGAAAT+TGG | 0.236326 | 4_4:-24587199 | None:intergenic |
| AAATATTGTGGAGTTGAAAA+TGG | 0.256652 | 4_4:+24588071 | Msa0675500:CDS |
| CTCTTAACTTTCAAATTCTT+AGG | 0.273033 | 4_4:+24586136 | Msa0675500:CDS |
| ATCATCAACGGATTTGATAT+TGG | 0.277153 | 4_4:-24586215 | None:intergenic |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 4_4:+24586065 | Msa0675500:CDS |
| TATTTCTCCACATAAATCTT+AGG | 0.291278 | 4_4:-24585974 | None:intergenic |
| TTAAAGGGACTGCAACAATA+AGG | 0.291725 | 4_4:+24587029 | Msa0675500:CDS |
| AGATTTATGTGGAGAAATAT+TGG | 0.302749 | 4_4:+24585978 | Msa0675500:CDS |
| TTTGGGAATTTAAGGAATAT+AGG | 0.312034 | 4_4:-24586016 | None:intergenic |
| CTAGTTCTTTGAACTTGCTT+TGG | 0.330347 | 4_4:-24586343 | None:intergenic |
| ATTTCTTGTTGAACACCGTT+TGG | 0.353826 | 4_4:-24586034 | None:intergenic |
| TTGGGAATTTAAGGAATATA+GGG | 0.355557 | 4_4:-24586015 | None:intergenic |
| TTATTAGAACAAACAGATAA+TGG | 0.369349 | 4_4:-24588270 | None:intergenic |
| TGGCAAAAGAAAAGTGAGTA+TGG | 0.382194 | 4_4:+24586369 | Msa0675500:CDS |
| ATAATTTATTTCTAAAGTAT+TGG | 0.389854 | 4_4:-24586191 | None:intergenic |
| CTGCAGATTCAGTAAAGGTT+GGG | 0.409562 | 4_4:+24588143 | Msa0675500:CDS |
| TTTCTTGTTGAACACCGTTT+GGG | 0.413820 | 4_4:-24586033 | None:intergenic |
| TAAAGGGACTGCAACAATAA+GGG | 0.414381 | 4_4:+24587030 | Msa0675500:CDS |
| GCATAAAACATTCAAGGTTA+TGG | 0.414778 | 4_4:+24587895 | Msa0675500:CDS |
| CGATTAAAGCTTCAGATGTT+GGG | 0.416702 | 4_4:-24586819 | None:intergenic |
| AAGATTATCCTATGAAAATC+TGG | 0.419859 | 4_4:-24585810 | None:intergenic |
| AAAGAATGCAAAGTGGAGAT+TGG | 0.426567 | 4_4:+24588177 | Msa0675500:CDS |
| AAAACCTAGGAATTTCTTTG+AGG | 0.431350 | 4_4:-24587251 | None:intergenic |
| TTACGCCAATGGTTATTACT+TGG | 0.435703 | 4_4:+24586891 | Msa0675500:CDS |
| ACCAAAGGAGTTTATGAAAA+GGG | 0.442898 | 4_4:+24588038 | Msa0675500:CDS |
| AAGTATTATGAGAGTATTTG+TGG | 0.445350 | 4_4:+24588120 | Msa0675500:CDS |
| CCTAGGAATTTCTTTGAGGT+TGG | 0.447970 | 4_4:-24587247 | None:intergenic |
| CAAGTTCAAAGAACTAGAAA+TGG | 0.448280 | 4_4:+24586349 | Msa0675500:CDS |
| TGTTCTCTTGAAAATATACT+TGG | 0.449633 | 4_4:-24586995 | None:intergenic |
| AATATTGTGGAGTTGAAAAT+GGG | 0.451536 | 4_4:+24588072 | Msa0675500:CDS |
| TCGATTAAAGCTTCAGATGT+TGG | 0.454021 | 4_4:-24586820 | None:intergenic |
| CAAAGTAGCCATGGTGAAGA+AGG | 0.465707 | 4_4:+24586786 | Msa0675500:CDS |
| CCAACCTCAAAGAAATTCCT+AGG | 0.466549 | 4_4:+24587247 | Msa0675500:CDS |
| ATATCCATATTTCAGAAACT+TGG | 0.480994 | 4_4:-24586113 | None:intergenic |
| AGTGATGAAGTGAGTGATAA+GGG | 0.491546 | 4_4:+24586301 | Msa0675500:CDS |
| GGACTCTGGAAGTGAGTTTG+AGG | 0.495977 | 4_4:+24587065 | Msa0675500:CDS |
| GCAAATTTGAGATGATTCAA+AGG | 0.505985 | 4_4:+24587173 | Msa0675500:CDS |
| GATGGAGCATAAAACATTCA+AGG | 0.521684 | 4_4:+24587889 | Msa0675500:CDS |
| CAATAAGGGTTGGTAAAGAA+AGG | 0.522250 | 4_4:+24587044 | Msa0675500:CDS |
| TACCAAAGGAGTTTATGAAA+AGG | 0.523215 | 4_4:+24588037 | Msa0675500:CDS |
| AAGTGATGAAGTGAGTGATA+AGG | 0.524193 | 4_4:+24586300 | Msa0675500:CDS |
| GGGATGTCATGAAAATATTG+TGG | 0.531604 | 4_4:+24588059 | Msa0675500:CDS |
| TTAACTTTCAAATTCTTAGG+TGG | 0.532981 | 4_4:+24586139 | Msa0675500:CDS |
| GAGGGTTCCTAAGATTTATG+TGG | 0.536061 | 4_4:+24585967 | Msa0675500:intron |
| TGTGGCTGCAGATTCAGTAA+AGG | 0.538766 | 4_4:+24588138 | Msa0675500:CDS |
| ATATTCCTTAAATTCCCAAA+CGG | 0.544640 | 4_4:+24586019 | Msa0675500:CDS |
| GCTGCAGATTCAGTAAAGGT+TGG | 0.545755 | 4_4:+24588142 | Msa0675500:CDS |
| GTATTTGCAGGGTGTACCAA+AGG | 0.558528 | 4_4:+24588023 | Msa0675500:intron |
| ACTTACCAAGTAATAACCAT+TGG | 0.568490 | 4_4:-24586896 | None:intergenic |
| TACAAAAGGTCGTGATGTGA+TGG | 0.575558 | 4_4:+24587871 | Msa0675500:intron |
| TGCAGATTCAGTAAAGGTTG+GGG | 0.578364 | 4_4:+24588144 | Msa0675500:CDS |
| CCAAAGGAGTTTATGAAAAG+GGG | 0.581936 | 4_4:+24588039 | Msa0675500:CDS |
| TATGGTGAAGAATAGAGTCC+CGG | 0.582585 | 4_4:+24587913 | Msa0675500:CDS |
| GGTTGGTAAAGAAAGGACTC+TGG | 0.588239 | 4_4:+24587051 | Msa0675500:CDS |
| AATCTTGTATGAGTGGTGGT+TGG | 0.588690 | 4_4:+24587107 | Msa0675500:CDS |
| GGGACTGCAACAATAAGGGT+TGG | 0.589089 | 4_4:+24587034 | Msa0675500:CDS |
| ATGTCACATACTTACGCCAA+TGG | 0.590674 | 4_4:+24586880 | Msa0675500:CDS |
| GGCTTCAGCACAATCATCAA+CGG | 0.595487 | 4_4:-24586227 | None:intergenic |
| GAGTGATAAGGGTTCAGATG+AGG | 0.595561 | 4_4:+24586312 | Msa0675500:CDS |
| AGGTAGTAACAAAGTAGCCA+TGG | 0.597558 | 4_4:+24586777 | Msa0675500:intron |
| TATGTGGAGAAATATTGGAA+AGG | 0.599905 | 4_4:+24585983 | Msa0675500:CDS |
| ATTTATGAAAGAATGCAAAG+TGG | 0.609427 | 4_4:+24588170 | Msa0675500:CDS |
| TGAAAATGGGGAGAAAGTCA+TGG | 0.631530 | 4_4:+24588085 | Msa0675500:CDS |
| TGGAATATGTTGAAATGACA+TGG | 0.667913 | 4_4:-24585790 | None:intergenic |
| ATATTGTGGAGTTGAAAATG+GGG | 0.692849 | 4_4:+24588073 | Msa0675500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTAAAGTTAAGATATT+TGG | + | chr4_4:24586166-24586185 | Msa0675500:intron | 10.0% |
| !!! | ATAATTTATTTCTAAAGTAT+TGG | - | chr4_4:24586194-24586213 | None:intergenic | 10.0% |
| !! | TATGATAAACAAAATAATAT+TGG | + | chr4_4:24586689-24586708 | Msa0675500:intron | 10.0% |
| !!! | AAATAATCTTTAAATTTTTC+AGG | + | chr4_4:24586757-24586776 | Msa0675500:intron | 10.0% |
| !!! | TTTAGATTTTATTATTGTAA+AGG | + | chr4_4:24587482-24587501 | Msa0675500:intron | 10.0% |
| !!! | TTAGATTTTATTATTGTAAA+GGG | + | chr4_4:24587483-24587502 | Msa0675500:intron | 10.0% |
| !! | ATATTATTATTTCAAATTCA+CGG | - | chr4_4:24587652-24587671 | None:intergenic | 10.0% |
| !!! | TTTATTTGTTTTTTTTTTGA+AGG | + | chr4_4:24587671-24587690 | Msa0675500:intron | 10.0% |
| !!! | TCAAATATATCTATATTTTT+TGG | + | chr4_4:24587800-24587819 | Msa0675500:intron | 10.0% |
| !!! | CAAATATATCTATATTTTTT+GGG | + | chr4_4:24587801-24587820 | Msa0675500:intron | 10.0% |
| !! | ACATTATAAATGAAACATAA+TGG | - | chr4_4:24585886-24585905 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr4_4:24586080-24586099 | Msa0675500:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr4_4:24586081-24586100 | Msa0675500:CDS | 15.0% |
| !! | ATTACTAATTTACTAGATTT+AGG | + | chr4_4:24586451-24586470 | Msa0675500:intron | 15.0% |
| !!! | ATTTTTCTACATTTGATTTT+AGG | - | chr4_4:24586741-24586760 | None:intergenic | 15.0% |
| !!! | AAAATAAGGATTTTCATTAT+TGG | - | chr4_4:24586851-24586870 | None:intergenic | 15.0% |
| !! | GACATTATAATTTCAAAATA+AGG | - | chr4_4:24586865-24586884 | None:intergenic | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr4_4:24587273-24587292 | Msa0675500:intron | 15.0% |
| !!! | AAACTTATGAATGATTTTTA+TGG | + | chr4_4:24587575-24587594 | Msa0675500:intron | 15.0% |
| !!! | GTATTTCAAATTTAAGATTA+AGG | - | chr4_4:24587629-24587648 | None:intergenic | 15.0% |
| !! | TATTATTATTTCAAATTCAC+GGG | - | chr4_4:24587651-24587670 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr4_4:24587786-24587805 | None:intergenic | 15.0% |
| !!! | AATTTTTTATTTGTATTTGC+AGG | + | chr4_4:24588011-24588030 | Msa0675500:intron | 15.0% |
| !!! | ATTTTTTATTTGTATTTGCA+GGG | + | chr4_4:24588012-24588031 | Msa0675500:intron | 15.0% |
| !!! | TGTTCAACAAGAAATATTTT+GGG | + | chr4_4:24586042-24586061 | Msa0675500:CDS | 20.0% |
| !!! | TACTTTTTAAGAGTTATTCA+AGG | + | chr4_4:24586534-24586553 | Msa0675500:intron | 20.0% |
| !!! | ACTTTTTAAGAGTTATTCAA+GGG | + | chr4_4:24586535-24586554 | Msa0675500:intron | 20.0% |
| !! | TTTATTAGAGACATTAACTA+AGG | - | chr4_4:24586953-24586972 | None:intergenic | 20.0% |
| !!! | AACACTTGAACAATTTTAAA+GGG | + | chr4_4:24587014-24587033 | Msa0675500:CDS | 20.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr4_4:24587202-24587221 | None:intergenic | 20.0% |
| !!! | CAAGAAAATTTACTTTTGAA+TGG | - | chr4_4:24587434-24587453 | None:intergenic | 20.0% |
| !!! | TTCAAAAGTAAATTTTCTTG+AGG | + | chr4_4:24587434-24587453 | Msa0675500:intron | 20.0% |
| !!! | TCAAAAGTAAATTTTCTTGA+GGG | + | chr4_4:24587435-24587454 | Msa0675500:intron | 20.0% |
| !! | AGGATTAATTACATCAAATA+TGG | + | chr4_4:24587937-24587956 | Msa0675500:intron | 20.0% |
| !! | TTATTAGAACAAACAGATAA+TGG | - | chr4_4:24588273-24588292 | None:intergenic | 20.0% |
| !! | ATTATCTGTTTGTTCTAATA+AGG | + | chr4_4:24588272-24588291 | Msa0675500:CDS | 20.0% |
| !! | AACATATTCCAGATTTTCAT+AGG | + | chr4_4:24585802-24585821 | Msa0675500:CDS | 25.0% |
| ! | AAGATTATCCTATGAAAATC+TGG | - | chr4_4:24585813-24585832 | None:intergenic | 25.0% |
| !!! | TTTTAATTTCTTTGTTGCAG+AGG | + | chr4_4:24585948-24585967 | Msa0675500:intron | 25.0% |
| !! | TTTAATTTCTTTGTTGCAGA+GGG | + | chr4_4:24585949-24585968 | Msa0675500:intron | 25.0% |
| ! | TATTTCTCCACATAAATCTT+AGG | - | chr4_4:24585977-24585996 | None:intergenic | 25.0% |
| ! | AGATTTATGTGGAGAAATAT+TGG | + | chr4_4:24585978-24585997 | Msa0675500:CDS | 25.0% |
| ! | TTGGGAATTTAAGGAATATA+GGG | - | chr4_4:24586018-24586037 | None:intergenic | 25.0% |
| ! | TTTGGGAATTTAAGGAATAT+AGG | - | chr4_4:24586019-24586038 | None:intergenic | 25.0% |
| ! | ATATTCCTTAAATTCCCAAA+CGG | + | chr4_4:24586019-24586038 | Msa0675500:CDS | 25.0% |
| !! | GTGTTCAACAAGAAATATTT+TGG | + | chr4_4:24586041-24586060 | Msa0675500:CDS | 25.0% |
| ! | ATATCCATATTTCAGAAACT+TGG | - | chr4_4:24586116-24586135 | None:intergenic | 25.0% |
| ! | CTCTTAACTTTCAAATTCTT+AGG | + | chr4_4:24586136-24586155 | Msa0675500:CDS | 25.0% |
| ! | TTAACTTTCAAATTCTTAGG+TGG | + | chr4_4:24586139-24586158 | Msa0675500:CDS | 25.0% |
| !!! | TGAGTTTTCTCTCTTTATTT+TGG | + | chr4_4:24586423-24586442 | Msa0675500:intron | 25.0% |
| !!! | TGCAATTTTTTTTGTCTGAA+AGG | + | chr4_4:24586563-24586582 | Msa0675500:intron | 25.0% |
| !! | TAAACCATTATTTGAAACAG+TGG | + | chr4_4:24586969-24586988 | Msa0675500:intron | 25.0% |
| ! | TGTTCTCTTGAAAATATACT+TGG | - | chr4_4:24586998-24587017 | None:intergenic | 25.0% |
| !! | GAACACTTGAACAATTTTAA+AGG | + | chr4_4:24587013-24587032 | Msa0675500:CDS | 25.0% |
| ! | AAGAAAAAATCTTGTATGAG+TGG | + | chr4_4:24587100-24587119 | Msa0675500:CDS | 25.0% |
| ! | AAAGAAAGAAAGAAAAACCT+AGG | - | chr4_4:24587267-24587286 | None:intergenic | 25.0% |
| !! | TATTTCTTTTATCCATGACA+AGG | + | chr4_4:24587351-24587370 | Msa0675500:intron | 25.0% |
| !! | TGAATGATTTTTATGGTTCT+TGG | + | chr4_4:24587582-24587601 | Msa0675500:intron | 25.0% |
| !!! | AACTTTTTGATAGTTAGTGA+TGG | + | chr4_4:24587718-24587737 | Msa0675500:intron | 25.0% |
| ! | TTTGATGTAATTAATCCTAC+CGG | - | chr4_4:24587935-24587954 | None:intergenic | 25.0% |
| ! | AAATATTGTGGAGTTGAAAA+TGG | + | chr4_4:24588071-24588090 | Msa0675500:CDS | 25.0% |
| ! | AATATTGTGGAGTTGAAAAT+GGG | + | chr4_4:24588072-24588091 | Msa0675500:CDS | 25.0% |
| !!! | AAGTATTATGAGAGTATTTG+TGG | + | chr4_4:24588120-24588139 | Msa0675500:CDS | 25.0% |
| ! | ATTTATGAAAGAATGCAAAG+TGG | + | chr4_4:24588170-24588189 | Msa0675500:CDS | 25.0% |
| !! | GTTTTTGATGTTTCAATTGA+AGG | + | chr4_4:24588240-24588259 | Msa0675500:CDS | 25.0% |
| TATGTGGAGAAATATTGGAA+AGG | + | chr4_4:24585983-24586002 | Msa0675500:CDS | 30.0% | |
| !! | TCAACAAGAAATATTTTGGG+TGG | + | chr4_4:24586045-24586064 | Msa0675500:CDS | 30.0% |
| !! | TTTGCCAAGTTTCTGAAATA+TGG | + | chr4_4:24586109-24586128 | Msa0675500:CDS | 30.0% |
| ! | ATCATCAACGGATTTGATAT+TGG | - | chr4_4:24586218-24586237 | None:intergenic | 30.0% |
| ! | ACTTTCATGAACTTCTTTTG+TGG | - | chr4_4:24586284-24586303 | None:intergenic | 30.0% |
| CAAGTTCAAAGAACTAGAAA+TGG | + | chr4_4:24586349-24586368 | Msa0675500:CDS | 30.0% | |
| ACTTACCAAGTAATAACCAT+TGG | - | chr4_4:24586899-24586918 | None:intergenic | 30.0% | |
| GTATCCACTGTTTCAAATAA+TGG | - | chr4_4:24586976-24586995 | None:intergenic | 30.0% | |
| AAAAAATCTTGTATGAGTGG+TGG | + | chr4_4:24587103-24587122 | Msa0675500:CDS | 30.0% | |
| ! | GCAAATTTGAGATGATTCAA+AGG | + | chr4_4:24587173-24587192 | Msa0675500:CDS | 30.0% |
| AAAACCTAGGAATTTCTTTG+AGG | - | chr4_4:24587254-24587273 | None:intergenic | 30.0% | |
| TATCCATGACAAGGTTATAA+AGG | + | chr4_4:24587360-24587379 | Msa0675500:intron | 30.0% | |
| ATCCATGACAAGGTTATAAA+GGG | + | chr4_4:24587361-24587380 | Msa0675500:intron | 30.0% | |
| TGTGTTTATGCATGTACAAA+AGG | + | chr4_4:24587857-24587876 | Msa0675500:intron | 30.0% | |
| GCATAAAACATTCAAGGTTA+TGG | + | chr4_4:24587895-24587914 | Msa0675500:CDS | 30.0% | |
| TTGATGTAATTAATCCTACC+GGG | - | chr4_4:24587934-24587953 | None:intergenic | 30.0% | |
| ATGTATTTCGAACATCTCTA+TGG | - | chr4_4:24587979-24587998 | None:intergenic | 30.0% | |
| TACCAAAGGAGTTTATGAAA+AGG | + | chr4_4:24588037-24588056 | Msa0675500:CDS | 30.0% | |
| ACCAAAGGAGTTTATGAAAA+GGG | + | chr4_4:24588038-24588057 | Msa0675500:CDS | 30.0% | |
| ATATTGTGGAGTTGAAAATG+GGG | + | chr4_4:24588073-24588092 | Msa0675500:CDS | 30.0% | |
| TTTCTTGTTGAACACCGTTT+GGG | - | chr4_4:24586036-24586055 | None:intergenic | 35.0% | |
| ATTTCTTGTTGAACACCGTT+TGG | - | chr4_4:24586037-24586056 | None:intergenic | 35.0% | |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr4_4:24586055-24586074 | Msa0675500:CDS | 35.0% |
| TGGAGAGTAATGGTGATATT+TGG | + | chr4_4:24586065-24586084 | Msa0675500:CDS | 35.0% | |
| ! | ACTTTCTTGACCTCTTTTTG+TGG | - | chr4_4:24586251-24586270 | None:intergenic | 35.0% |
| AAGTGATGAAGTGAGTGATA+AGG | + | chr4_4:24586300-24586319 | Msa0675500:CDS | 35.0% | |
| AGTGATGAAGTGAGTGATAA+GGG | + | chr4_4:24586301-24586320 | Msa0675500:CDS | 35.0% | |
| ! | CTAGTTCTTTGAACTTGCTT+TGG | - | chr4_4:24586346-24586365 | None:intergenic | 35.0% |
| TGGCAAAAGAAAAGTGAGTA+TGG | + | chr4_4:24586369-24586388 | Msa0675500:CDS | 35.0% | |
| ! | TGAGAATTTTTGTTGGGTAG+TGG | - | chr4_4:24586401-24586420 | None:intergenic | 35.0% |
| ACTACCCAACAAAAATTCTC+AGG | + | chr4_4:24586400-24586419 | Msa0675500:CDS | 35.0% | |
| ! | CTCACCTGAGAATTTTTGTT+GGG | - | chr4_4:24586407-24586426 | None:intergenic | 35.0% |
| ! | ACTCACCTGAGAATTTTTGT+TGG | - | chr4_4:24586408-24586427 | None:intergenic | 35.0% |
| CGATTAAAGCTTCAGATGTT+GGG | - | chr4_4:24586822-24586841 | None:intergenic | 35.0% | |
| TCGATTAAAGCTTCAGATGT+TGG | - | chr4_4:24586823-24586842 | None:intergenic | 35.0% | |
| TTACGCCAATGGTTATTACT+TGG | + | chr4_4:24586891-24586910 | Msa0675500:CDS | 35.0% | |
| TTAAAGGGACTGCAACAATA+AGG | + | chr4_4:24587029-24587048 | Msa0675500:CDS | 35.0% | |
| TAAAGGGACTGCAACAATAA+GGG | + | chr4_4:24587030-24587049 | Msa0675500:CDS | 35.0% | |
| !! | CAATAAGGGTTGGTAAAGAA+AGG | + | chr4_4:24587044-24587063 | Msa0675500:CDS | 35.0% |
| ATCCCTTTATAACCTTGTCA+TGG | - | chr4_4:24587366-24587385 | None:intergenic | 35.0% | |
| GATGGAGCATAAAACATTCA+AGG | + | chr4_4:24587889-24587908 | Msa0675500:CDS | 35.0% | |
| CCAAAGGAGTTTATGAAAAG+GGG | + | chr4_4:24588039-24588058 | Msa0675500:CDS | 35.0% | |
| GGGATGTCATGAAAATATTG+TGG | + | chr4_4:24588059-24588078 | Msa0675500:CDS | 35.0% | |
| AAAGAATGCAAAGTGGAGAT+TGG | + | chr4_4:24588177-24588196 | Msa0675500:CDS | 35.0% | |
| GAGGGTTCCTAAGATTTATG+TGG | + | chr4_4:24585967-24585986 | Msa0675500:intron | 40.0% | |
| GAACACCGTTTGGGAATTTA+AGG | - | chr4_4:24586027-24586046 | None:intergenic | 40.0% | |
| AGGTAGTAACAAAGTAGCCA+TGG | + | chr4_4:24586777-24586796 | Msa0675500:intron | 40.0% | |
| !! | TTTTCTAGCCTTCTTCACCA+TGG | - | chr4_4:24586797-24586816 | None:intergenic | 40.0% |
| ATGTCACATACTTACGCCAA+TGG | + | chr4_4:24586880-24586899 | Msa0675500:CDS | 40.0% | |
| AATCTTGTATGAGTGGTGGT+TGG | + | chr4_4:24587107-24587126 | Msa0675500:CDS | 40.0% | |
| !! | CCTAGGAATTTCTTTGAGGT+TGG | - | chr4_4:24587250-24587269 | None:intergenic | 40.0% |
| CCAACCTCAAAGAAATTCCT+AGG | + | chr4_4:24587247-24587266 | Msa0675500:CDS | 40.0% | |
| GGTTATAAAGGGATCTCTTG+TGG | + | chr4_4:24587372-24587391 | Msa0675500:intron | 40.0% | |
| GATCTCTTGTGGTGTAAAGA+AGG | + | chr4_4:24587383-24587402 | Msa0675500:intron | 40.0% | |
| GTAAAGAAGGAAGACATTGC+AGG | + | chr4_4:24587396-24587415 | Msa0675500:intron | 40.0% | |
| AAGACATTGCAGGAACTTCT+AGG | + | chr4_4:24587406-24587425 | Msa0675500:intron | 40.0% | |
| TACAAAAGGTCGTGATGTGA+TGG | + | chr4_4:24587871-24587890 | Msa0675500:intron | 40.0% | |
| TATGGTGAAGAATAGAGTCC+CGG | + | chr4_4:24587913-24587932 | Msa0675500:CDS | 40.0% | |
| ! | CCCCTTTTCATAAACTCCTT+TGG | - | chr4_4:24588042-24588061 | None:intergenic | 40.0% |
| TGAAAATGGGGAGAAAGTCA+TGG | + | chr4_4:24588085-24588104 | Msa0675500:CDS | 40.0% | |
| CTGCAGATTCAGTAAAGGTT+GGG | + | chr4_4:24588143-24588162 | Msa0675500:CDS | 40.0% | |
| TGCAGATTCAGTAAAGGTTG+GGG | + | chr4_4:24588144-24588163 | Msa0675500:CDS | 40.0% | |
| GGCTTCAGCACAATCATCAA+CGG | - | chr4_4:24586230-24586249 | None:intergenic | 45.0% | |
| TGTGCTGAAGCCACAAAAAG+AGG | + | chr4_4:24586238-24586257 | Msa0675500:CDS | 45.0% | |
| GAGTGATAAGGGTTCAGATG+AGG | + | chr4_4:24586312-24586331 | Msa0675500:CDS | 45.0% | |
| CAAAGTAGCCATGGTGAAGA+AGG | + | chr4_4:24586786-24586805 | Msa0675500:CDS | 45.0% | |
| !! | GGTTGGTAAAGAAAGGACTC+TGG | + | chr4_4:24587051-24587070 | Msa0675500:CDS | 45.0% |
| !! | CTTTGAGGTTGGTTCGTTTC+TGG | - | chr4_4:24587239-24587258 | None:intergenic | 45.0% |
| GTATTTGCAGGGTGTACCAA+AGG | + | chr4_4:24588023-24588042 | Msa0675500:intron | 45.0% | |
| TGTGGCTGCAGATTCAGTAA+AGG | + | chr4_4:24588138-24588157 | Msa0675500:CDS | 45.0% | |
| GCTGCAGATTCAGTAAAGGT+TGG | + | chr4_4:24588142-24588161 | Msa0675500:CDS | 45.0% | |
| !!! | AAAAAAAATCATATTTTTAT+AGG | - | chr4_4:24586646-24586665 | None:intergenic | 5.0% |
| !!! | TAAAAATATGATTTTTTTTA+AGG | + | chr4_4:24586647-24586666 | Msa0675500:intron | 5.0% |
| !!! | TATATATATATTTTTGAATT+TGG | + | chr4_4:24587547-24587566 | Msa0675500:intron | 5.0% |
| GGGACTGCAACAATAAGGGT+TGG | + | chr4_4:24587034-24587053 | Msa0675500:CDS | 50.0% | |
| ! | GGACTCTGGAAGTGAGTTTG+AGG | + | chr4_4:24587065-24587084 | Msa0675500:CDS | 50.0% |
| GTGAAGAATAGAGTCCCGGT+AGG | + | chr4_4:24587917-24587936 | Msa0675500:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 24585792 | 24588311 | 24585792 | ID=Msa0675500;Name=Msa0675500 |
| chr4_4 | mRNA | 24585792 | 24588311 | 24585792 | ID=Msa0675500-mRNA-1;Parent=Msa0675500;Name=Msa0675500-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|0.71|0.5|8|0|413 |
| chr4_4 | exon | 24585792 | 24585848 | 24585792 | ID=Msa0675500-mRNA-1:exon:6743;Parent=Msa0675500-mRNA-1 |
| chr4_4 | exon | 24585968 | 24586174 | 24585968 | ID=Msa0675500-mRNA-1:exon:6744;Parent=Msa0675500-mRNA-1 |
| chr4_4 | exon | 24586181 | 24586421 | 24586181 | ID=Msa0675500-mRNA-1:exon:6745;Parent=Msa0675500-mRNA-1 |
| chr4_4 | exon | 24586779 | 24586912 | 24586779 | ID=Msa0675500-mRNA-1:exon:6746;Parent=Msa0675500-mRNA-1 |
| chr4_4 | exon | 24586989 | 24587086 | 24586989 | ID=Msa0675500-mRNA-1:exon:6747;Parent=Msa0675500-mRNA-1 |
| chr4_4 | exon | 24587099 | 24587268 | 24587099 | ID=Msa0675500-mRNA-1:exon:6748;Parent=Msa0675500-mRNA-1 |
| chr4_4 | exon | 24587879 | 24587934 | 24587879 | ID=Msa0675500-mRNA-1:exon:6749;Parent=Msa0675500-mRNA-1 |
| chr4_4 | exon | 24588033 | 24588311 | 24588033 | ID=Msa0675500-mRNA-1:exon:6750;Parent=Msa0675500-mRNA-1 |
| chr4_4 | CDS | 24585792 | 24585848 | 24585792 | ID=Msa0675500-mRNA-1:cds;Parent=Msa0675500-mRNA-1 |
| chr4_4 | CDS | 24585968 | 24586174 | 24585968 | ID=Msa0675500-mRNA-1:cds;Parent=Msa0675500-mRNA-1 |
| chr4_4 | CDS | 24586181 | 24586421 | 24586181 | ID=Msa0675500-mRNA-1:cds;Parent=Msa0675500-mRNA-1 |
| chr4_4 | CDS | 24586779 | 24586912 | 24586779 | ID=Msa0675500-mRNA-1:cds;Parent=Msa0675500-mRNA-1 |
| chr4_4 | CDS | 24586989 | 24587086 | 24586989 | ID=Msa0675500-mRNA-1:cds;Parent=Msa0675500-mRNA-1 |
| chr4_4 | CDS | 24587099 | 24587268 | 24587099 | ID=Msa0675500-mRNA-1:cds;Parent=Msa0675500-mRNA-1 |
| chr4_4 | CDS | 24587879 | 24587934 | 24587879 | ID=Msa0675500-mRNA-1:cds;Parent=Msa0675500-mRNA-1 |
| chr4_4 | CDS | 24588033 | 24588311 | 24588033 | ID=Msa0675500-mRNA-1:cds;Parent=Msa0675500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
