Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675540 | XP_039683887.1 | 81.295 | 139 | 26 | 0 | 1 | 139 | 1 | 139 | 1.56e-63 | 231 |
| Msa0675540 | XP_039683887.1 | 88.366 | 361 | 42 | 0 | 131 | 491 | 239 | 599 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675540 | sp|Q9SZL8|FRS5_ARATH | 39.496 | 357 | 198 | 4 | 141 | 490 | 281 | 626 | 3.60e-84 | 279 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675540 | A0A1S3VJK5 | 39.560 | 91 | 55 | 0 | 39 | 129 | 27 | 117 | 3.70e-11 | 77.4 |
| Msa0675540 | A0A1S3VJK5 | 64.023 | 353 | 127 | 0 | 138 | 490 | 234 | 586 | 6.95e-164 | 492 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0675540 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675540 | MtrunA17_Chr5g0441581 | 60.278 | 360 | 143 | 0 | 131 | 490 | 216 | 575 | 4.54e-157 | 462 |
| Msa0675540 | MtrunA17_Chr5g0441581 | 43.860 | 114 | 51 | 2 | 18 | 129 | 11 | 113 | 2.84e-17 | 85.1 |
| Msa0675540 | MtrunA17_Chr2g0296781 | 53.571 | 364 | 158 | 3 | 133 | 490 | 190 | 548 | 5.17e-133 | 402 |
| Msa0675540 | MtrunA17_Chr6g0477261 | 53.571 | 364 | 158 | 3 | 133 | 490 | 79 | 437 | 6.26e-133 | 399 |
| Msa0675540 | MtrunA17_Chr1g0196541 | 50.847 | 354 | 169 | 3 | 141 | 491 | 198 | 549 | 1.87e-120 | 369 |
| Msa0675540 | MtrunA17_Chr5g0448761 | 41.737 | 357 | 190 | 4 | 141 | 490 | 272 | 617 | 1.36e-91 | 295 |
| Msa0675540 | MtrunA17_Chr1g0202341 | 41.880 | 351 | 198 | 3 | 141 | 490 | 256 | 601 | 2.32e-87 | 282 |
| Msa0675540 | MtrunA17_Chr2g0291581 | 39.266 | 354 | 209 | 3 | 141 | 490 | 262 | 613 | 1.88e-85 | 277 |
| Msa0675540 | MtrunA17_Chr5g0448511 | 37.892 | 351 | 212 | 2 | 141 | 490 | 44 | 389 | 2.16e-84 | 270 |
| Msa0675540 | MtrunA17_Chr2g0329031 | 38.251 | 366 | 210 | 4 | 130 | 490 | 199 | 553 | 2.16e-83 | 273 |
| Msa0675540 | MtrunA17_Chr1g0207551 | 40.164 | 366 | 202 | 3 | 131 | 490 | 227 | 581 | 2.05e-81 | 269 |
| Msa0675540 | MtrunA17_Chr3g0080351 | 36.339 | 366 | 218 | 3 | 130 | 490 | 260 | 615 | 1.37e-75 | 254 |
| Msa0675540 | MtrunA17_Chr2g0287061 | 41.595 | 351 | 196 | 6 | 140 | 490 | 352 | 693 | 2.23e-75 | 253 |
| Msa0675540 | MtrunA17_Chr5g0440451 | 37.097 | 372 | 206 | 7 | 130 | 490 | 242 | 596 | 2.87e-73 | 249 |
| Msa0675540 | MtrunA17_Chr3g0118611 | 35.792 | 366 | 219 | 6 | 130 | 490 | 139 | 493 | 3.18e-71 | 241 |
| Msa0675540 | MtrunA17_Chr2g0291591 | 40.426 | 282 | 168 | 0 | 133 | 414 | 257 | 538 | 8.99e-69 | 230 |
| Msa0675540 | MtrunA17_Chr8g0363841 | 32.877 | 365 | 232 | 5 | 131 | 490 | 213 | 569 | 8.15e-57 | 200 |
| Msa0675540 | MtrunA17_Chr6g0458391 | 31.534 | 352 | 232 | 3 | 141 | 490 | 413 | 757 | 2.35e-56 | 200 |
| Msa0675540 | MtrunA17_Chr2g0324011 | 31.818 | 352 | 232 | 3 | 141 | 490 | 215 | 560 | 3.31e-55 | 194 |
| Msa0675540 | MtrunA17_Chr1g0203721 | 28.729 | 362 | 251 | 2 | 130 | 490 | 260 | 615 | 6.24e-53 | 191 |
| Msa0675540 | MtrunA17_Chr1g0198761 | 32.584 | 356 | 218 | 4 | 141 | 489 | 263 | 603 | 1.66e-52 | 189 |
| Msa0675540 | MtrunA17_Chr2g0287651 | 32.312 | 359 | 233 | 4 | 133 | 490 | 275 | 624 | 2.70e-52 | 190 |
| Msa0675540 | MtrunA17_Chr3g0082121 | 33.427 | 356 | 217 | 5 | 141 | 490 | 241 | 582 | 4.06e-50 | 182 |
| Msa0675540 | MtrunA17_Chr1g0203051 | 29.598 | 348 | 233 | 4 | 141 | 486 | 285 | 622 | 1.48e-49 | 179 |
| Msa0675540 | MtrunA17_Chr2g0276841 | 29.630 | 351 | 232 | 4 | 138 | 485 | 278 | 616 | 3.81e-44 | 165 |
| Msa0675540 | MtrunA17_Chr5g0431001 | 38.140 | 215 | 130 | 2 | 133 | 345 | 269 | 482 | 9.84e-43 | 158 |
| Msa0675540 | MtrunA17_Chr1g0164591 | 38.298 | 188 | 115 | 1 | 141 | 327 | 121 | 308 | 1.97e-37 | 140 |
| Msa0675540 | MtrunA17_Chr2g0294841 | 26.446 | 363 | 249 | 6 | 132 | 489 | 250 | 599 | 5.16e-36 | 142 |
| Msa0675540 | MtrunA17_Chr2g0290391 | 26.404 | 356 | 236 | 5 | 141 | 490 | 270 | 605 | 1.72e-33 | 134 |
| Msa0675540 | MtrunA17_Chr2g0308841 | 26.906 | 223 | 155 | 4 | 271 | 491 | 4 | 220 | 2.56e-20 | 90.5 |
| Msa0675540 | MtrunA17_Chr7g0258861 | 45.570 | 79 | 41 | 1 | 141 | 217 | 216 | 294 | 4.58e-14 | 73.2 |
| Msa0675540 | MtrunA17_Chr6g0451441 | 36.842 | 114 | 68 | 2 | 17 | 128 | 54 | 165 | 2.76e-12 | 68.9 |
| Msa0675540 | MtrunA17_Chr1g0149131 | 29.091 | 110 | 77 | 1 | 214 | 322 | 1 | 110 | 2.64e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0675540 | AT4G38180.1 | 39.496 | 357 | 198 | 4 | 141 | 490 | 281 | 626 | 3.66e-85 | 279 |
| Msa0675540 | AT4G15090.1 | 37.293 | 362 | 220 | 3 | 130 | 490 | 246 | 601 | 3.00e-80 | 266 |
| Msa0675540 | AT4G15090.5 | 37.293 | 362 | 220 | 3 | 130 | 490 | 246 | 601 | 3.00e-80 | 266 |
| Msa0675540 | AT4G15090.3 | 37.293 | 362 | 220 | 3 | 130 | 490 | 246 | 601 | 3.00e-80 | 266 |
| Msa0675540 | AT4G15090.2 | 37.293 | 362 | 220 | 3 | 130 | 490 | 246 | 601 | 3.00e-80 | 266 |
| Msa0675540 | AT4G15090.4 | 37.293 | 362 | 220 | 3 | 130 | 490 | 246 | 601 | 3.00e-80 | 266 |
| Msa0675540 | AT3G22170.2 | 37.017 | 362 | 221 | 2 | 130 | 490 | 255 | 610 | 1.68e-77 | 259 |
| Msa0675540 | AT3G22170.1 | 37.017 | 362 | 221 | 2 | 130 | 490 | 255 | 610 | 1.68e-77 | 259 |
| Msa0675540 | AT1G52520.1 | 35.246 | 366 | 225 | 4 | 133 | 491 | 271 | 631 | 9.76e-76 | 252 |
| Msa0675540 | AT1G76320.3 | 35.897 | 351 | 216 | 3 | 141 | 490 | 194 | 536 | 1.41e-72 | 243 |
| Msa0675540 | AT1G76320.2 | 36.364 | 352 | 213 | 4 | 141 | 490 | 194 | 536 | 3.94e-72 | 243 |
| Msa0675540 | AT1G76320.1 | 35.897 | 351 | 216 | 3 | 141 | 490 | 194 | 536 | 4.21e-72 | 243 |
| Msa0675540 | AT1G76320.4 | 35.897 | 351 | 216 | 3 | 141 | 490 | 194 | 536 | 4.21e-72 | 243 |
| Msa0675540 | AT3G06250.2 | 38.244 | 353 | 204 | 7 | 140 | 490 | 356 | 696 | 9.84e-72 | 242 |
| Msa0675540 | AT3G06250.1 | 38.244 | 353 | 204 | 7 | 140 | 490 | 356 | 696 | 9.84e-72 | 242 |
| Msa0675540 | AT3G06250.3 | 38.244 | 353 | 204 | 7 | 140 | 490 | 356 | 696 | 9.84e-72 | 242 |
| Msa0675540 | AT2G27110.3 | 35.537 | 363 | 224 | 5 | 130 | 490 | 72 | 426 | 8.06e-71 | 239 |
| Msa0675540 | AT2G32250.5 | 34.540 | 359 | 218 | 3 | 138 | 490 | 198 | 545 | 3.71e-70 | 238 |
| Msa0675540 | AT1G80010.1 | 36.034 | 358 | 214 | 4 | 141 | 490 | 303 | 653 | 5.71e-70 | 237 |
| Msa0675540 | AT2G32250.8 | 34.540 | 359 | 218 | 3 | 138 | 490 | 157 | 504 | 6.26e-70 | 238 |
| Msa0675540 | AT2G32250.7 | 34.540 | 359 | 218 | 3 | 138 | 490 | 157 | 504 | 6.53e-70 | 238 |
| Msa0675540 | AT2G32250.6 | 34.540 | 359 | 218 | 3 | 138 | 490 | 198 | 545 | 8.09e-70 | 238 |
| Msa0675540 | AT2G32250.1 | 34.540 | 359 | 218 | 3 | 138 | 490 | 198 | 545 | 8.09e-70 | 238 |
| Msa0675540 | AT2G32250.3 | 34.540 | 359 | 218 | 3 | 138 | 490 | 198 | 545 | 8.09e-70 | 238 |
| Msa0675540 | AT2G32250.2 | 34.540 | 359 | 218 | 3 | 138 | 490 | 198 | 545 | 9.16e-70 | 238 |
| Msa0675540 | AT2G32250.4 | 34.540 | 359 | 218 | 3 | 138 | 490 | 198 | 545 | 9.16e-70 | 238 |
| Msa0675540 | AT2G27110.2 | 35.537 | 363 | 224 | 5 | 130 | 490 | 217 | 571 | 1.06e-69 | 238 |
| Msa0675540 | AT2G27110.1 | 35.537 | 363 | 224 | 5 | 130 | 490 | 217 | 571 | 1.06e-69 | 238 |
| Msa0675540 | AT5G18960.2 | 36.236 | 356 | 207 | 5 | 140 | 490 | 380 | 720 | 2.33e-67 | 231 |
| Msa0675540 | AT5G18960.1 | 36.236 | 356 | 207 | 5 | 140 | 490 | 380 | 720 | 2.33e-67 | 231 |
| Msa0675540 | AT4G38170.1 | 32.768 | 354 | 227 | 4 | 141 | 490 | 45 | 391 | 1.27e-66 | 224 |
| Msa0675540 | AT4G19990.1 | 34.091 | 352 | 226 | 3 | 141 | 490 | 147 | 494 | 1.40e-60 | 211 |
| Msa0675540 | AT4G19990.3 | 34.091 | 352 | 226 | 3 | 141 | 490 | 204 | 551 | 3.75e-60 | 211 |
| Msa0675540 | AT4G19990.4 | 34.091 | 352 | 226 | 3 | 141 | 490 | 204 | 551 | 3.75e-60 | 211 |
| Msa0675540 | AT4G19990.5 | 34.091 | 352 | 226 | 3 | 141 | 490 | 204 | 551 | 4.31e-60 | 211 |
| Msa0675540 | AT4G19990.7 | 34.091 | 352 | 226 | 3 | 141 | 490 | 218 | 565 | 4.88e-60 | 211 |
| Msa0675540 | AT4G19990.6 | 34.091 | 352 | 226 | 3 | 141 | 490 | 204 | 551 | 6.07e-60 | 210 |
| Msa0675540 | AT4G19990.2 | 34.091 | 352 | 226 | 3 | 141 | 490 | 204 | 551 | 6.07e-60 | 210 |
| Msa0675540 | AT1G10240.2 | 28.000 | 350 | 241 | 4 | 141 | 489 | 259 | 598 | 1.97e-41 | 157 |
| Msa0675540 | AT1G10240.1 | 28.000 | 350 | 241 | 4 | 141 | 489 | 259 | 598 | 1.97e-41 | 157 |
| Msa0675540 | AT5G28530.1 | 27.473 | 364 | 226 | 6 | 141 | 490 | 274 | 613 | 1.66e-36 | 143 |
| Msa0675540 | AT5G28530.3 | 27.887 | 355 | 232 | 5 | 141 | 490 | 274 | 609 | 7.47e-36 | 141 |
| Msa0675540 | AT5G28530.2 | 27.887 | 355 | 232 | 5 | 141 | 490 | 274 | 609 | 7.47e-36 | 141 |
| Msa0675540 | AT5G28530.4 | 25.697 | 323 | 202 | 6 | 182 | 490 | 252 | 550 | 1.55e-25 | 110 |
| Msa0675540 | AT5G28530.5 | 26.115 | 314 | 208 | 5 | 182 | 490 | 252 | 546 | 6.17e-25 | 108 |
Find 93 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATTTAAAACATGATTTC+TGG | 0.164544 | 4_4:-24647723 | Msa0675540:CDS |
| CGTGTTGATGTTTCGGATTC+CGG | 0.181586 | 4_4:-24648923 | Msa0675540:CDS |
| TCTTTCCCGCTCTTCGAAAA+TGG | 0.249066 | 4_4:+24647756 | None:intergenic |
| ATCAACATACACTGCTTTAG+AGG | 0.273727 | 4_4:-24647398 | Msa0675540:CDS |
| ACAACATTCATTGATAAATA+TGG | 0.288122 | 4_4:-24647805 | Msa0675540:CDS |
| CACTTATGCTCGATGGTTGA+TGG | 0.299906 | 4_4:-24649010 | None:intergenic |
| AAGATCGCAACCTAGTAAAA+TGG | 0.310904 | 4_4:+24648110 | None:intergenic |
| GAGCAATCAACTTTCTTTGT+TGG | 0.316883 | 4_4:+24648662 | None:intergenic |
| TTCATTGATAAATATGGTTT+GGG | 0.319898 | 4_4:-24647799 | Msa0675540:CDS |
| GTGTTGATGTTTCGGATTCC+GGG | 0.331005 | 4_4:-24648922 | Msa0675540:CDS |
| ATTCATTGATAAATATGGTT+TGG | 0.338141 | 4_4:-24647800 | Msa0675540:CDS |
| AGCAATGCAGAATGCAATTC+AGG | 0.352862 | 4_4:-24647986 | Msa0675540:CDS |
| GTACACTCATGAAAAGTATA+TGG | 0.364693 | 4_4:-24647488 | Msa0675540:CDS |
| ATGCCATTTGCCCCGTTTGT+TGG | 0.369173 | 4_4:-24648153 | Msa0675540:CDS |
| TGCTGCTCGTGTTGATGTTT+CGG | 0.374211 | 4_4:-24648930 | Msa0675540:CDS |
| ACACAATACTTACTTTCGTT+TGG | 0.384602 | 4_4:+24647355 | None:intergenic |
| CACCACCTATGCCTAGTATT+AGG | 0.393202 | 4_4:+24647955 | None:intergenic |
| AGTATTGTGTTGATTTCAAC+GGG | 0.398148 | 4_4:-24647342 | Msa0675540:CDS |
| CTAGGCATAGGTGGTGTCTA+TGG | 0.405638 | 4_4:-24647948 | Msa0675540:CDS |
| TCTCCATCAGGGGCTAATAA+AGG | 0.410771 | 4_4:+24648965 | None:intergenic |
| TTATTTAAAACATGATTTCT+GGG | 0.414268 | 4_4:-24647722 | Msa0675540:CDS |
| TTAAAAGACATATTGATAGT+AGG | 0.421502 | 4_4:+24648857 | None:intergenic |
| CCTCTGTGTTGTTGACATTC+CGG | 0.424793 | 4_4:+24647699 | None:intergenic |
| TGATTGCTCAGCTAAGATAA+TGG | 0.429088 | 4_4:-24648648 | Msa0675540:CDS |
| GTCATATTTGTTTGTCAAGT+AGG | 0.436248 | 4_4:+24648176 | None:intergenic |
| GATGATTTACACCAACAAAC+GGG | 0.438849 | 4_4:+24648142 | None:intergenic |
| GATAATGGTTGCTTTAAAGA+AGG | 0.440080 | 4_4:-24648633 | Msa0675540:CDS |
| AAACTAGAAACTCTAAGAAA+TGG | 0.442585 | 4_4:-24648772 | Msa0675540:CDS |
| ACACCAACAAACGGGGCAAA+TGG | 0.443695 | 4_4:+24648150 | None:intergenic |
| CTTGTTTGATAGCATATTCA+CGG | 0.444216 | 4_4:+24648807 | None:intergenic |
| ATGGTTTGGGTGAAAATGAT+TGG | 0.445440 | 4_4:-24647786 | Msa0675540:CDS |
| TGATCAGTTACAATTCTCAT+TGG | 0.453145 | 4_4:+24648015 | None:intergenic |
| AAAGGATGATTGATCAAGAT+AGG | 0.453804 | 4_4:+24648983 | None:intergenic |
| GGCTAAGGTGTATGTCTTCG+AGG | 0.457503 | 4_4:-24648041 | Msa0675540:CDS |
| ACTCCAAGACAAGGCTGAAA+AGG | 0.462412 | 4_4:-24647593 | Msa0675540:CDS |
| AGGTTGTGTTTCCTAATACT+AGG | 0.465284 | 4_4:-24647966 | Msa0675540:CDS |
| ATAATGGTTGCTTTAAAGAA+GGG | 0.465642 | 4_4:-24648632 | Msa0675540:intron |
| TTAAAACATGATTTCTGGGC+CGG | 0.468973 | 4_4:-24647718 | Msa0675540:CDS |
| AACTCTAAGAAATGGTCAGC+TGG | 0.475783 | 4_4:-24648764 | Msa0675540:CDS |
| TTTGTTGGTGTAAATCATCA+TGG | 0.480095 | 4_4:-24648138 | Msa0675540:CDS |
| CCGTCATCTAGCTCTCCATC+AGG | 0.480197 | 4_4:+24648953 | None:intergenic |
| CTAAACTTATCTTGCCATGA+TGG | 0.481512 | 4_4:-24647213 | None:intergenic |
| ATTTGTTGTTTCAAAGGTCC+CGG | 0.482096 | 4_4:+24648904 | None:intergenic |
| GTTGGATTCGTCTTCAAAGT+TGG | 0.494220 | 4_4:+24648680 | None:intergenic |
| TGATGATTTACACCAACAAA+CGG | 0.495743 | 4_4:+24648141 | None:intergenic |
| TTTCGAAGAGCGGGAAAGAT+GGG | 0.502201 | 4_4:-24647752 | Msa0675540:CDS |
| TTACCTGGTTGTTCGAAACA+TGG | 0.503284 | 4_4:-24648062 | Msa0675540:CDS |
| CGTGAATATGCTATCAAACA+AGG | 0.505903 | 4_4:-24648806 | Msa0675540:CDS |
| GACAACATTTGTTGTTTCAA+AGG | 0.508809 | 4_4:+24648898 | None:intergenic |
| TCAGTTACAATTCTCATTGG+AGG | 0.512007 | 4_4:+24648018 | None:intergenic |
| AAACGATCAGGCAGGTGTAC+GGG | 0.512319 | 4_4:-24648492 | Msa0675540:intron |
| TCTGGGCTGATGCACGTAGT+AGG | 0.516810 | 4_4:-24648242 | Msa0675540:CDS |
| AACATCACTAAAGTACTCAT+AGG | 0.520771 | 4_4:+24648215 | None:intergenic |
| CATCCTTTATTAGCCCCTGA+TGG | 0.528074 | 4_4:-24648968 | Msa0675540:CDS |
| GAACAAAAGTTTCCGTTCCA+TGG | 0.529264 | 4_4:-24648468 | Msa0675540:intron |
| CGTCATCTAGCTCTCCATCA+GGG | 0.529370 | 4_4:+24648954 | None:intergenic |
| GGATTCGTCTTCAAAGTTGG+TGG | 0.530111 | 4_4:+24648683 | None:intergenic |
| TAAACGATCAGGCAGGTGTA+CGG | 0.533293 | 4_4:-24648493 | Msa0675540:intron |
| TTGTGTCTATGATTCTCTGC+TGG | 0.535941 | 4_4:-24647851 | Msa0675540:CDS |
| ATTGTTGAATTTGACCCGCA+TGG | 0.537156 | 4_4:+24647532 | None:intergenic |
| TGGTCATCTAAGAGTGAAAG+AGG | 0.544459 | 4_4:-24647242 | Msa0675540:CDS |
| AAGTATTGTGTTGATTTCAA+CGG | 0.550175 | 4_4:-24647343 | Msa0675540:CDS |
| TGTTTCGAACAACCAGGTAA+AGG | 0.558836 | 4_4:+24648065 | None:intergenic |
| ATTCTAACATGTGCAAGAGA+AGG | 0.566543 | 4_4:-24648725 | Msa0675540:CDS |
| GAGATACAAGTAGAATTTCG+TGG | 0.566723 | 4_4:-24647466 | Msa0675540:CDS |
| TGTTTCCTAATACTAGGCAT+AGG | 0.571109 | 4_4:-24647960 | Msa0675540:CDS |
| TTGGTGGTATGTTCGATTCG+TGG | 0.574288 | 4_4:+24648699 | None:intergenic |
| TCTCGAAGGTGTGACTACAT+TGG | 0.577648 | 4_4:-24647428 | Msa0675540:CDS |
| AAGATACTAGGTCCTTTACC+TGG | 0.580541 | 4_4:-24648077 | Msa0675540:CDS |
| TGTTTGCTGTTTGAGTTCAG+AGG | 0.581515 | 4_4:-24647295 | Msa0675540:CDS |
| TTGTTGGTGTAAATCATCAT+GGG | 0.583689 | 4_4:-24648137 | Msa0675540:CDS |
| CATGGCAAGATAAGTTTAGA+CGG | 0.585427 | 4_4:+24647217 | None:intergenic |
| ATATTTGTTTGTCAAGTAGG+TGG | 0.595151 | 4_4:+24648179 | None:intergenic |
| GGTGTCTATGGCATATAATG+AGG | 0.597420 | 4_4:-24647936 | Msa0675540:CDS |
| CGACAACGCACTCCAAGACA+AGG | 0.606607 | 4_4:-24647602 | Msa0675540:CDS |
| AGATACAAGTAGAATTTCGT+GGG | 0.607840 | 4_4:-24647465 | Msa0675540:CDS |
| AAATGCAACTGTTATCTCGA+AGG | 0.615193 | 4_4:-24647442 | Msa0675540:CDS |
| TTCCTAATACTAGGCATAGG+TGG | 0.615209 | 4_4:-24647957 | Msa0675540:CDS |
| CAAGCACAATCATTCCATGC+GGG | 0.616971 | 4_4:-24647546 | Msa0675540:CDS |
| GGTTGTTCGAAACATGGCTA+AGG | 0.617470 | 4_4:-24648056 | Msa0675540:CDS |
| AAAGGATACGCACAGTACAA+AGG | 0.620281 | 4_4:-24647895 | Msa0675540:CDS |
| GTCATCTAGCTCTCCATCAG+GGG | 0.623144 | 4_4:+24648955 | None:intergenic |
| CGACATCACATACCATGGAA+CGG | 0.625469 | 4_4:+24648456 | None:intergenic |
| TAGCCATGTTTCGAACAACC+AGG | 0.627145 | 4_4:+24648059 | None:intergenic |
| GGATGATTGATCAAGATAGG+AGG | 0.629981 | 4_4:+24648986 | None:intergenic |
| GTGAATATGCTATCAAACAA+GGG | 0.632509 | 4_4:-24648805 | Msa0675540:CDS |
| CAAGGCTGAAAAGGAATACG+AGG | 0.638254 | 4_4:-24647584 | Msa0675540:CDS |
| ATGATTTACACCAACAAACG+GGG | 0.651499 | 4_4:+24648143 | None:intergenic |
| CCTGATGGAGAGCTAGATGA+CGG | 0.653770 | 4_4:-24648953 | Msa0675540:CDS |
| TTAGAGGAGAGTATTGTCTG+TGG | 0.685062 | 4_4:-24647382 | Msa0675540:CDS |
| TCAAGCACAATCATTCCATG+CGG | 0.697666 | 4_4:-24647547 | Msa0675540:CDS |
| CCGGAATGTCAACAACACAG+AGG | 0.797075 | 4_4:-24647699 | Msa0675540:CDS |
| GTATTGTGTTGATTTCAACG+GGG | 0.859785 | 4_4:-24647341 | Msa0675540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATCAATATGTCTTTTAAAT+CGG | - | chr4_4:24647362-24647381 | Msa0675540:CDS | 15.0% |
| !!! | AAATCATGTTTTAAATAACA+TGG | + | chr4_4:24648490-24648509 | None:intergenic | 15.0% |
| !!! | TTATTTAAAACATGATTTCT+GGG | - | chr4_4:24648492-24648511 | Msa0675540:intron | 15.0% |
| !!! | TATCAATATGTCTTTTAAAT+CGG | - | chr4_4:24647362-24647381 | Msa0675540:CDS | 15.0% |
| !!! | AAATCATGTTTTAAATAACA+TGG | + | chr4_4:24648490-24648509 | None:intergenic | 15.0% |
| !!! | TTATTTAAAACATGATTTCT+GGG | - | chr4_4:24648492-24648511 | Msa0675540:intron | 15.0% |
| !!! | TTAAAAGACATATTGATAGT+AGG | + | chr4_4:24647360-24647379 | None:intergenic | 20.0% |
| !! | AAAATTACCAAAAAAGTGAA+AGG | - | chr4_4:24648301-24648320 | Msa0675540:intron | 20.0% |
| !! | ACAACATTCATTGATAAATA+TGG | - | chr4_4:24648409-24648428 | Msa0675540:intron | 20.0% |
| !! | ATTCATTGATAAATATGGTT+TGG | - | chr4_4:24648414-24648433 | Msa0675540:intron | 20.0% |
| !! | TTCATTGATAAATATGGTTT+GGG | - | chr4_4:24648415-24648434 | Msa0675540:intron | 20.0% |
| !!! | GTTATTTAAAACATGATTTC+TGG | - | chr4_4:24648491-24648510 | Msa0675540:intron | 20.0% |
| !!! | TTAAAAGACATATTGATAGT+AGG | + | chr4_4:24647360-24647379 | None:intergenic | 20.0% |
| !! | AAAATTACCAAAAAAGTGAA+AGG | - | chr4_4:24648301-24648320 | Msa0675540:intron | 20.0% |
| !! | ACAACATTCATTGATAAATA+TGG | - | chr4_4:24648409-24648428 | Msa0675540:intron | 20.0% |
| !! | ATTCATTGATAAATATGGTT+TGG | - | chr4_4:24648414-24648433 | Msa0675540:intron | 20.0% |
| !! | TTCATTGATAAATATGGTTT+GGG | - | chr4_4:24648415-24648434 | Msa0675540:intron | 20.0% |
| !!! | GTTATTTAAAACATGATTTC+TGG | - | chr4_4:24648491-24648510 | Msa0675540:intron | 20.0% |
| !! | AAACTAGAAACTCTAAGAAA+TGG | - | chr4_4:24647442-24647461 | Msa0675540:CDS | 25.0% |
| !!! | ATAATGGTTGCTTTAAAGAA+GGG | - | chr4_4:24647582-24647601 | Msa0675540:CDS | 25.0% |
| ! | TTACGAAAATCTAACATTTG+TGG | - | chr4_4:24647785-24647804 | Msa0675540:CDS | 25.0% |
| ! | TAAATTACTTTGCTAGAATG+AGG | - | chr4_4:24647885-24647904 | Msa0675540:CDS | 25.0% |
| ! | AAATTACTTTGCTAGAATGA+GGG | - | chr4_4:24647886-24647905 | Msa0675540:CDS | 25.0% |
| !! | TTCATGTGTAGAATATTTTC+TGG | - | chr4_4:24647954-24647973 | Msa0675540:CDS | 25.0% |
| !! | TCATGTGTAGAATATTTTCT+GGG | - | chr4_4:24647955-24647974 | Msa0675540:CDS | 25.0% |
| !! | ATCATAGACACAATTTTTCA+TGG | + | chr4_4:24648356-24648375 | None:intergenic | 25.0% |
| !!! | TGGTTGATGATTTTTTTGTT+GGG | - | chr4_4:24648383-24648402 | Msa0675540:intron | 25.0% |
| !!! | AAGTATTGTGTTGATTTCAA+CGG | - | chr4_4:24648871-24648890 | Msa0675540:CDS | 25.0% |
| !! | AAACTAGAAACTCTAAGAAA+TGG | - | chr4_4:24647442-24647461 | Msa0675540:CDS | 25.0% |
| !!! | ATAATGGTTGCTTTAAAGAA+GGG | - | chr4_4:24647582-24647601 | Msa0675540:CDS | 25.0% |
| ! | TTACGAAAATCTAACATTTG+TGG | - | chr4_4:24647785-24647804 | Msa0675540:CDS | 25.0% |
| ! | TAAATTACTTTGCTAGAATG+AGG | - | chr4_4:24647885-24647904 | Msa0675540:CDS | 25.0% |
| ! | AAATTACTTTGCTAGAATGA+GGG | - | chr4_4:24647886-24647905 | Msa0675540:CDS | 25.0% |
| !! | TTCATGTGTAGAATATTTTC+TGG | - | chr4_4:24647954-24647973 | Msa0675540:CDS | 25.0% |
| !! | TCATGTGTAGAATATTTTCT+GGG | - | chr4_4:24647955-24647974 | Msa0675540:CDS | 25.0% |
| !! | ATCATAGACACAATTTTTCA+TGG | + | chr4_4:24648356-24648375 | None:intergenic | 25.0% |
| !!! | TGGTTGATGATTTTTTTGTT+GGG | - | chr4_4:24648383-24648402 | Msa0675540:intron | 25.0% |
| !!! | AAGTATTGTGTTGATTTCAA+CGG | - | chr4_4:24648871-24648890 | Msa0675540:CDS | 25.0% |
| AAAGGATGATTGATCAAGAT+AGG | + | chr4_4:24647234-24647253 | None:intergenic | 30.0% | |
| !! | GACAACATTTGTTGTTTCAA+AGG | + | chr4_4:24647319-24647338 | None:intergenic | 30.0% |
| ! | CTTGTTTGATAGCATATTCA+CGG | + | chr4_4:24647410-24647429 | None:intergenic | 30.0% |
| GTGAATATGCTATCAAACAA+GGG | - | chr4_4:24647409-24647428 | Msa0675540:CDS | 30.0% | |
| !! | GATAATGGTTGCTTTAAAGA+AGG | - | chr4_4:24647581-24647600 | Msa0675540:CDS | 30.0% |
| !! | TTGCTTTAAAGAAGGGTATA+TGG | - | chr4_4:24647589-24647608 | Msa0675540:CDS | 30.0% |
| AGATAAGTCCAAGTAAATCA+CGG | - | chr4_4:24647646-24647665 | Msa0675540:CDS | 30.0% | |
| !! | GACAATTTTGATAAACGATC+AGG | - | chr4_4:24647710-24647729 | Msa0675540:CDS | 30.0% |
| ! | CTTTTTCTATGAGATTGACA+TGG | - | chr4_4:24647922-24647941 | Msa0675540:CDS | 30.0% |
| ! | AACATCACTAAAGTACTCAT+AGG | + | chr4_4:24648002-24648021 | None:intergenic | 30.0% |
| ATATTTGTTTGTCAAGTAGG+TGG | + | chr4_4:24648038-24648057 | None:intergenic | 30.0% | |
| GTCATATTTGTTTGTCAAGT+AGG | + | chr4_4:24648041-24648060 | None:intergenic | 30.0% | |
| TGATGATTTACACCAACAAA+CGG | + | chr4_4:24648076-24648095 | None:intergenic | 30.0% | |
| TTTGTTGGTGTAAATCATCA+TGG | - | chr4_4:24648076-24648095 | Msa0675540:CDS | 30.0% | |
| TTGTTGGTGTAAATCATCAT+GGG | - | chr4_4:24648077-24648096 | Msa0675540:CDS | 30.0% | |
| ! | TTTTATCAGCTGAAGATACT+AGG | - | chr4_4:24648125-24648144 | Msa0675540:CDS | 30.0% |
| TGATCAGTTACAATTCTCAT+TGG | + | chr4_4:24648202-24648221 | None:intergenic | 30.0% | |
| !!! | CTGGTTGATGATTTTTTTGT+TGG | - | chr4_4:24648382-24648401 | Msa0675540:intron | 30.0% |
| !!! | TTGATGATTTTTTTGTTGGG+TGG | - | chr4_4:24648386-24648405 | Msa0675540:intron | 30.0% |
| !!! | AGTATGAATGCTTTTTTCGA+TGG | - | chr4_4:24648544-24648563 | Msa0675540:intron | 30.0% |
| ! | GTACACTCATGAAAAGTATA+TGG | - | chr4_4:24648726-24648745 | Msa0675540:CDS | 30.0% |
| AGATACAAGTAGAATTTCGT+GGG | - | chr4_4:24648749-24648768 | Msa0675540:CDS | 30.0% | |
| ACACAATACTTACTTTCGTT+TGG | + | chr4_4:24648862-24648881 | None:intergenic | 30.0% | |
| !! | AGTATTGTGTTGATTTCAAC+GGG | - | chr4_4:24648872-24648891 | Msa0675540:CDS | 30.0% |
| AAAGGATGATTGATCAAGAT+AGG | + | chr4_4:24647234-24647253 | None:intergenic | 30.0% | |
| !! | GACAACATTTGTTGTTTCAA+AGG | + | chr4_4:24647319-24647338 | None:intergenic | 30.0% |
| ! | CTTGTTTGATAGCATATTCA+CGG | + | chr4_4:24647410-24647429 | None:intergenic | 30.0% |
| GTGAATATGCTATCAAACAA+GGG | - | chr4_4:24647409-24647428 | Msa0675540:CDS | 30.0% | |
| !! | GATAATGGTTGCTTTAAAGA+AGG | - | chr4_4:24647581-24647600 | Msa0675540:CDS | 30.0% |
| !! | TTGCTTTAAAGAAGGGTATA+TGG | - | chr4_4:24647589-24647608 | Msa0675540:CDS | 30.0% |
| AGATAAGTCCAAGTAAATCA+CGG | - | chr4_4:24647646-24647665 | Msa0675540:CDS | 30.0% | |
| !! | GACAATTTTGATAAACGATC+AGG | - | chr4_4:24647710-24647729 | Msa0675540:CDS | 30.0% |
| ! | CTTTTTCTATGAGATTGACA+TGG | - | chr4_4:24647922-24647941 | Msa0675540:CDS | 30.0% |
| ! | AACATCACTAAAGTACTCAT+AGG | + | chr4_4:24648002-24648021 | None:intergenic | 30.0% |
| ATATTTGTTTGTCAAGTAGG+TGG | + | chr4_4:24648038-24648057 | None:intergenic | 30.0% | |
| GTCATATTTGTTTGTCAAGT+AGG | + | chr4_4:24648041-24648060 | None:intergenic | 30.0% | |
| TGATGATTTACACCAACAAA+CGG | + | chr4_4:24648076-24648095 | None:intergenic | 30.0% | |
| TTTGTTGGTGTAAATCATCA+TGG | - | chr4_4:24648076-24648095 | Msa0675540:CDS | 30.0% | |
| TTGTTGGTGTAAATCATCAT+GGG | - | chr4_4:24648077-24648096 | Msa0675540:CDS | 30.0% | |
| ! | TTTTATCAGCTGAAGATACT+AGG | - | chr4_4:24648125-24648144 | Msa0675540:CDS | 30.0% |
| TGATCAGTTACAATTCTCAT+TGG | + | chr4_4:24648202-24648221 | None:intergenic | 30.0% | |
| !!! | CTGGTTGATGATTTTTTTGT+TGG | - | chr4_4:24648382-24648401 | Msa0675540:intron | 30.0% |
| !!! | TTGATGATTTTTTTGTTGGG+TGG | - | chr4_4:24648386-24648405 | Msa0675540:intron | 30.0% |
| !!! | AGTATGAATGCTTTTTTCGA+TGG | - | chr4_4:24648544-24648563 | Msa0675540:intron | 30.0% |
| ! | GTACACTCATGAAAAGTATA+TGG | - | chr4_4:24648726-24648745 | Msa0675540:CDS | 30.0% |
| AGATACAAGTAGAATTTCGT+GGG | - | chr4_4:24648749-24648768 | Msa0675540:CDS | 30.0% | |
| ACACAATACTTACTTTCGTT+TGG | + | chr4_4:24648862-24648881 | None:intergenic | 30.0% | |
| !! | AGTATTGTGTTGATTTCAAC+GGG | - | chr4_4:24648872-24648891 | Msa0675540:CDS | 30.0% |
| !! | ATTTGTTGTTTCAAAGGTCC+CGG | + | chr4_4:24647313-24647332 | None:intergenic | 35.0% |
| CGTGAATATGCTATCAAACA+AGG | - | chr4_4:24647408-24647427 | Msa0675540:CDS | 35.0% | |
| ATTCTAACATGTGCAAGAGA+AGG | - | chr4_4:24647489-24647508 | Msa0675540:CDS | 35.0% | |
| GAGCAATCAACTTTCTTTGT+TGG | + | chr4_4:24647555-24647574 | None:intergenic | 35.0% | |
| TGATTGCTCAGCTAAGATAA+TGG | - | chr4_4:24647566-24647585 | Msa0675540:CDS | 35.0% | |
| !! | ATTTTGATAAACGATCAGGC+AGG | - | chr4_4:24647714-24647733 | Msa0675540:CDS | 35.0% |
| ATGATTTACACCAACAAACG+GGG | + | chr4_4:24648074-24648093 | None:intergenic | 35.0% | |
| GATGATTTACACCAACAAAC+GGG | + | chr4_4:24648075-24648094 | None:intergenic | 35.0% | |
| AAGATCGCAACCTAGTAAAA+TGG | + | chr4_4:24648107-24648126 | None:intergenic | 35.0% | |
| TCAGTTACAATTCTCATTGG+AGG | + | chr4_4:24648199-24648218 | None:intergenic | 35.0% | |
| AGGTTGTGTTTCCTAATACT+AGG | - | chr4_4:24648248-24648267 | Msa0675540:CDS | 35.0% | |
| TGTTTCCTAATACTAGGCAT+AGG | - | chr4_4:24648254-24648273 | Msa0675540:intron | 35.0% | |
| !!! | TGCGTATCCTTTCACTTTTT+TGG | + | chr4_4:24648311-24648330 | None:intergenic | 35.0% |
| ! | ATGGTTTGGGTGAAAATGAT+TGG | - | chr4_4:24648428-24648447 | Msa0675540:intron | 35.0% |
| ! | TGAATACCATTTTCGAAGAG+CGG | - | chr4_4:24648452-24648471 | Msa0675540:intron | 35.0% |
| ! | TTAAAACATGATTTCTGGGC+CGG | - | chr4_4:24648496-24648515 | Msa0675540:intron | 35.0% |
| GAGATACAAGTAGAATTTCG+TGG | - | chr4_4:24648748-24648767 | Msa0675540:CDS | 35.0% | |
| AAATGCAACTGTTATCTCGA+AGG | - | chr4_4:24648772-24648791 | Msa0675540:CDS | 35.0% | |
| ATCAACATACACTGCTTTAG+AGG | - | chr4_4:24648816-24648835 | Msa0675540:CDS | 35.0% | |
| !! | GTATTGTGTTGATTTCAACG+GGG | - | chr4_4:24648873-24648892 | Msa0675540:CDS | 35.0% |
| CATGGCAAGATAAGTTTAGA+CGG | + | chr4_4:24649000-24649019 | None:intergenic | 35.0% | |
| !! | ATTTGTTGTTTCAAAGGTCC+CGG | + | chr4_4:24647313-24647332 | None:intergenic | 35.0% |
| CGTGAATATGCTATCAAACA+AGG | - | chr4_4:24647408-24647427 | Msa0675540:CDS | 35.0% | |
| ATTCTAACATGTGCAAGAGA+AGG | - | chr4_4:24647489-24647508 | Msa0675540:CDS | 35.0% | |
| GAGCAATCAACTTTCTTTGT+TGG | + | chr4_4:24647555-24647574 | None:intergenic | 35.0% | |
| TGATTGCTCAGCTAAGATAA+TGG | - | chr4_4:24647566-24647585 | Msa0675540:CDS | 35.0% | |
| !! | ATTTTGATAAACGATCAGGC+AGG | - | chr4_4:24647714-24647733 | Msa0675540:CDS | 35.0% |
| ATGATTTACACCAACAAACG+GGG | + | chr4_4:24648074-24648093 | None:intergenic | 35.0% | |
| GATGATTTACACCAACAAAC+GGG | + | chr4_4:24648075-24648094 | None:intergenic | 35.0% | |
| AAGATCGCAACCTAGTAAAA+TGG | + | chr4_4:24648107-24648126 | None:intergenic | 35.0% | |
| TCAGTTACAATTCTCATTGG+AGG | + | chr4_4:24648199-24648218 | None:intergenic | 35.0% | |
| AGGTTGTGTTTCCTAATACT+AGG | - | chr4_4:24648248-24648267 | Msa0675540:CDS | 35.0% | |
| TGTTTCCTAATACTAGGCAT+AGG | - | chr4_4:24648254-24648273 | Msa0675540:intron | 35.0% | |
| !!! | TGCGTATCCTTTCACTTTTT+TGG | + | chr4_4:24648311-24648330 | None:intergenic | 35.0% |
| ! | ATGGTTTGGGTGAAAATGAT+TGG | - | chr4_4:24648428-24648447 | Msa0675540:intron | 35.0% |
| ! | TGAATACCATTTTCGAAGAG+CGG | - | chr4_4:24648452-24648471 | Msa0675540:intron | 35.0% |
| ! | TTAAAACATGATTTCTGGGC+CGG | - | chr4_4:24648496-24648515 | Msa0675540:intron | 35.0% |
| GAGATACAAGTAGAATTTCG+TGG | - | chr4_4:24648748-24648767 | Msa0675540:CDS | 35.0% | |
| AAATGCAACTGTTATCTCGA+AGG | - | chr4_4:24648772-24648791 | Msa0675540:CDS | 35.0% | |
| ATCAACATACACTGCTTTAG+AGG | - | chr4_4:24648816-24648835 | Msa0675540:CDS | 35.0% | |
| !! | GTATTGTGTTGATTTCAACG+GGG | - | chr4_4:24648873-24648892 | Msa0675540:CDS | 35.0% |
| CATGGCAAGATAAGTTTAGA+CGG | + | chr4_4:24649000-24649019 | None:intergenic | 35.0% | |
| GGATGATTGATCAAGATAGG+AGG | + | chr4_4:24647231-24647250 | None:intergenic | 40.0% | |
| ! | AACTCTAAGAAATGGTCAGC+TGG | - | chr4_4:24647450-24647469 | Msa0675540:CDS | 40.0% |
| GTTGGATTCGTCTTCAAAGT+TGG | + | chr4_4:24647537-24647556 | None:intergenic | 40.0% | |
| GCAAACAACCGTGATTTACT+TGG | + | chr4_4:24647657-24647676 | None:intergenic | 40.0% | |
| AGTAAATCACGGTTGTTTGC+TGG | - | chr4_4:24647657-24647676 | Msa0675540:CDS | 40.0% | |
| AGATTGACATGCATGCATAG+CGG | - | chr4_4:24647688-24647707 | Msa0675540:CDS | 40.0% | |
| GAACAAAAGTTTCCGTTCCA+TGG | - | chr4_4:24647746-24647765 | Msa0675540:CDS | 40.0% | |
| GAGAGATGTCAGAAACTTTG+TGG | - | chr4_4:24647809-24647828 | Msa0675540:CDS | 40.0% | |
| AAAAAGACACCTTCTCGAGA+AGG | - | chr4_4:24647841-24647860 | Msa0675540:CDS | 40.0% | |
| ! | CATGGGCAATCCATTTTACT+AGG | - | chr4_4:24648094-24648113 | Msa0675540:CDS | 40.0% |
| AAGATACTAGGTCCTTTACC+TGG | - | chr4_4:24648137-24648156 | Msa0675540:CDS | 40.0% | |
| TGTTTCGAACAACCAGGTAA+AGG | + | chr4_4:24648152-24648171 | None:intergenic | 40.0% | |
| TTACCTGGTTGTTCGAAACA+TGG | - | chr4_4:24648152-24648171 | Msa0675540:CDS | 40.0% | |
| AGCAATGCAGAATGCAATTC+AGG | - | chr4_4:24648228-24648247 | Msa0675540:CDS | 40.0% | |
| TTCCTAATACTAGGCATAGG+TGG | - | chr4_4:24648257-24648276 | Msa0675540:intron | 40.0% | |
| GGTGTCTATGGCATATAATG+AGG | - | chr4_4:24648278-24648297 | Msa0675540:intron | 40.0% | |
| AAAGGATACGCACAGTACAA+AGG | - | chr4_4:24648319-24648338 | Msa0675540:intron | 40.0% | |
| TTGTGTCTATGATTCTCTGC+TGG | - | chr4_4:24648363-24648382 | Msa0675540:intron | 40.0% | |
| ! | GAATACCATTTTCGAAGAGC+GGG | - | chr4_4:24648453-24648472 | Msa0675540:intron | 40.0% |
| !! | ATTCCTTTTCAGCCTTGTCT+TGG | + | chr4_4:24648627-24648646 | None:intergenic | 40.0% |
| ! | AGGAATACGAGGCAGATTTT+CGG | - | chr4_4:24648641-24648660 | Msa0675540:CDS | 40.0% |
| TCAAGCACAATCATTCCATG+CGG | - | chr4_4:24648667-24648686 | Msa0675540:CDS | 40.0% | |
| ATTGTTGAATTTGACCCGCA+TGG | + | chr4_4:24648685-24648704 | None:intergenic | 40.0% | |
| !! | TTAGAGGAGAGTATTGTCTG+TGG | - | chr4_4:24648832-24648851 | Msa0675540:CDS | 40.0% |
| !! | TGTTTGCTGTTTGAGTTCAG+AGG | - | chr4_4:24648919-24648938 | Msa0675540:CDS | 40.0% |
| TGGTCATCTAAGAGTGAAAG+AGG | - | chr4_4:24648972-24648991 | Msa0675540:CDS | 40.0% | |
| GGATGATTGATCAAGATAGG+AGG | + | chr4_4:24647231-24647250 | None:intergenic | 40.0% | |
| ! | AACTCTAAGAAATGGTCAGC+TGG | - | chr4_4:24647450-24647469 | Msa0675540:CDS | 40.0% |
| GTTGGATTCGTCTTCAAAGT+TGG | + | chr4_4:24647537-24647556 | None:intergenic | 40.0% | |
| GCAAACAACCGTGATTTACT+TGG | + | chr4_4:24647657-24647676 | None:intergenic | 40.0% | |
| AGTAAATCACGGTTGTTTGC+TGG | - | chr4_4:24647657-24647676 | Msa0675540:CDS | 40.0% | |
| AGATTGACATGCATGCATAG+CGG | - | chr4_4:24647688-24647707 | Msa0675540:CDS | 40.0% | |
| GAACAAAAGTTTCCGTTCCA+TGG | - | chr4_4:24647746-24647765 | Msa0675540:CDS | 40.0% | |
| GAGAGATGTCAGAAACTTTG+TGG | - | chr4_4:24647809-24647828 | Msa0675540:CDS | 40.0% | |
| AAAAAGACACCTTCTCGAGA+AGG | - | chr4_4:24647841-24647860 | Msa0675540:CDS | 40.0% | |
| ! | CATGGGCAATCCATTTTACT+AGG | - | chr4_4:24648094-24648113 | Msa0675540:CDS | 40.0% |
| AAGATACTAGGTCCTTTACC+TGG | - | chr4_4:24648137-24648156 | Msa0675540:CDS | 40.0% | |
| TGTTTCGAACAACCAGGTAA+AGG | + | chr4_4:24648152-24648171 | None:intergenic | 40.0% | |
| TTACCTGGTTGTTCGAAACA+TGG | - | chr4_4:24648152-24648171 | Msa0675540:CDS | 40.0% | |
| AGCAATGCAGAATGCAATTC+AGG | - | chr4_4:24648228-24648247 | Msa0675540:CDS | 40.0% | |
| TTCCTAATACTAGGCATAGG+TGG | - | chr4_4:24648257-24648276 | Msa0675540:intron | 40.0% | |
| GGTGTCTATGGCATATAATG+AGG | - | chr4_4:24648278-24648297 | Msa0675540:intron | 40.0% | |
| AAAGGATACGCACAGTACAA+AGG | - | chr4_4:24648319-24648338 | Msa0675540:intron | 40.0% | |
| TTGTGTCTATGATTCTCTGC+TGG | - | chr4_4:24648363-24648382 | Msa0675540:intron | 40.0% | |
| ! | GAATACCATTTTCGAAGAGC+GGG | - | chr4_4:24648453-24648472 | Msa0675540:intron | 40.0% |
| !! | ATTCCTTTTCAGCCTTGTCT+TGG | + | chr4_4:24648627-24648646 | None:intergenic | 40.0% |
| ! | AGGAATACGAGGCAGATTTT+CGG | - | chr4_4:24648641-24648660 | Msa0675540:CDS | 40.0% |
| TCAAGCACAATCATTCCATG+CGG | - | chr4_4:24648667-24648686 | Msa0675540:CDS | 40.0% | |
| ATTGTTGAATTTGACCCGCA+TGG | + | chr4_4:24648685-24648704 | None:intergenic | 40.0% | |
| !! | TTAGAGGAGAGTATTGTCTG+TGG | - | chr4_4:24648832-24648851 | Msa0675540:CDS | 40.0% |
| !! | TGTTTGCTGTTTGAGTTCAG+AGG | - | chr4_4:24648919-24648938 | Msa0675540:CDS | 40.0% |
| TGGTCATCTAAGAGTGAAAG+AGG | - | chr4_4:24648972-24648991 | Msa0675540:CDS | 40.0% | |
| CATCCTTTATTAGCCCCTGA+TGG | - | chr4_4:24647246-24647265 | Msa0675540:CDS | 45.0% | |
| TCTCCATCAGGGGCTAATAA+AGG | + | chr4_4:24647252-24647271 | None:intergenic | 45.0% | |
| ! | TGCTGCTCGTGTTGATGTTT+CGG | - | chr4_4:24647284-24647303 | Msa0675540:CDS | 45.0% |
| ! | CGTGTTGATGTTTCGGATTC+CGG | - | chr4_4:24647291-24647310 | Msa0675540:CDS | 45.0% |
| ! | GTGTTGATGTTTCGGATTCC+GGG | - | chr4_4:24647292-24647311 | Msa0675540:CDS | 45.0% |
| ! | TTGGTGGTATGTTCGATTCG+TGG | + | chr4_4:24647518-24647537 | None:intergenic | 45.0% |
| GGATTCGTCTTCAAAGTTGG+TGG | + | chr4_4:24647534-24647553 | None:intergenic | 45.0% | |
| TAAACGATCAGGCAGGTGTA+CGG | - | chr4_4:24647721-24647740 | Msa0675540:CDS | 45.0% | |
| CGACATCACATACCATGGAA+CGG | + | chr4_4:24647761-24647780 | None:intergenic | 45.0% | |
| CGTTCCATGGTATGTGATGT+CGG | - | chr4_4:24647759-24647778 | Msa0675540:CDS | 45.0% | |
| CTATGAGATTGACATGGACG+AGG | - | chr4_4:24647928-24647947 | Msa0675540:CDS | 45.0% | |
| TAGCCATGTTTCGAACAACC+AGG | + | chr4_4:24648158-24648177 | None:intergenic | 45.0% | |
| GGTTGTTCGAAACATGGCTA+AGG | - | chr4_4:24648158-24648177 | Msa0675540:CDS | 45.0% | |
| CACCACCTATGCCTAGTATT+AGG | + | chr4_4:24648262-24648281 | None:intergenic | 45.0% | |
| TCTTTCCCGCTCTTCGAAAA+TGG | + | chr4_4:24648461-24648480 | None:intergenic | 45.0% | |
| ! | TTTTCGAAGAGCGGGAAAGA+TGG | - | chr4_4:24648461-24648480 | Msa0675540:intron | 45.0% |
| TTTCGAAGAGCGGGAAAGAT+GGG | - | chr4_4:24648462-24648481 | Msa0675540:intron | 45.0% | |
| ! | CCTCTGTGTTGTTGACATTC+CGG | + | chr4_4:24648518-24648537 | None:intergenic | 45.0% |
| ACTCCAAGACAAGGCTGAAA+AGG | - | chr4_4:24648621-24648640 | Msa0675540:intron | 45.0% | |
| CAAGGCTGAAAAGGAATACG+AGG | - | chr4_4:24648630-24648649 | Msa0675540:intron | 45.0% | |
| CAAGCACAATCATTCCATGC+GGG | - | chr4_4:24648668-24648687 | Msa0675540:CDS | 45.0% | |
| ! | TCTCGAAGGTGTGACTACAT+TGG | - | chr4_4:24648786-24648805 | Msa0675540:CDS | 45.0% |
| !! | AGACATTCGCTTTTCGTGCT+TGG | - | chr4_4:24648952-24648971 | Msa0675540:CDS | 45.0% |
| CATCCTTTATTAGCCCCTGA+TGG | - | chr4_4:24647246-24647265 | Msa0675540:CDS | 45.0% | |
| TCTCCATCAGGGGCTAATAA+AGG | + | chr4_4:24647252-24647271 | None:intergenic | 45.0% | |
| ! | TGCTGCTCGTGTTGATGTTT+CGG | - | chr4_4:24647284-24647303 | Msa0675540:CDS | 45.0% |
| ! | CGTGTTGATGTTTCGGATTC+CGG | - | chr4_4:24647291-24647310 | Msa0675540:CDS | 45.0% |
| ! | GTGTTGATGTTTCGGATTCC+GGG | - | chr4_4:24647292-24647311 | Msa0675540:CDS | 45.0% |
| ! | TTGGTGGTATGTTCGATTCG+TGG | + | chr4_4:24647518-24647537 | None:intergenic | 45.0% |
| GGATTCGTCTTCAAAGTTGG+TGG | + | chr4_4:24647534-24647553 | None:intergenic | 45.0% | |
| TAAACGATCAGGCAGGTGTA+CGG | - | chr4_4:24647721-24647740 | Msa0675540:CDS | 45.0% | |
| CGACATCACATACCATGGAA+CGG | + | chr4_4:24647761-24647780 | None:intergenic | 45.0% | |
| CGTTCCATGGTATGTGATGT+CGG | - | chr4_4:24647759-24647778 | Msa0675540:CDS | 45.0% | |
| CTATGAGATTGACATGGACG+AGG | - | chr4_4:24647928-24647947 | Msa0675540:CDS | 45.0% | |
| TAGCCATGTTTCGAACAACC+AGG | + | chr4_4:24648158-24648177 | None:intergenic | 45.0% | |
| GGTTGTTCGAAACATGGCTA+AGG | - | chr4_4:24648158-24648177 | Msa0675540:CDS | 45.0% | |
| CACCACCTATGCCTAGTATT+AGG | + | chr4_4:24648262-24648281 | None:intergenic | 45.0% | |
| TCTTTCCCGCTCTTCGAAAA+TGG | + | chr4_4:24648461-24648480 | None:intergenic | 45.0% | |
| ! | TTTTCGAAGAGCGGGAAAGA+TGG | - | chr4_4:24648461-24648480 | Msa0675540:intron | 45.0% |
| TTTCGAAGAGCGGGAAAGAT+GGG | - | chr4_4:24648462-24648481 | Msa0675540:intron | 45.0% | |
| ! | CCTCTGTGTTGTTGACATTC+CGG | + | chr4_4:24648518-24648537 | None:intergenic | 45.0% |
| ACTCCAAGACAAGGCTGAAA+AGG | - | chr4_4:24648621-24648640 | Msa0675540:intron | 45.0% | |
| CAAGGCTGAAAAGGAATACG+AGG | - | chr4_4:24648630-24648649 | Msa0675540:intron | 45.0% | |
| CAAGCACAATCATTCCATGC+GGG | - | chr4_4:24648668-24648687 | Msa0675540:CDS | 45.0% | |
| ! | TCTCGAAGGTGTGACTACAT+TGG | - | chr4_4:24648786-24648805 | Msa0675540:CDS | 45.0% |
| !! | AGACATTCGCTTTTCGTGCT+TGG | - | chr4_4:24648952-24648971 | Msa0675540:CDS | 45.0% |
| !! | GTCATCTAGCTCTCCATCAG+GGG | + | chr4_4:24647262-24647281 | None:intergenic | 50.0% |
| !! | CGTCATCTAGCTCTCCATCA+GGG | + | chr4_4:24647263-24647282 | None:intergenic | 50.0% |
| CCTGATGGAGAGCTAGATGA+CGG | - | chr4_4:24647261-24647280 | Msa0675540:CDS | 50.0% | |
| AAACGATCAGGCAGGTGTAC+GGG | - | chr4_4:24647722-24647741 | Msa0675540:CDS | 50.0% | |
| TCCATGGTATGTGATGTCGG+TGG | - | chr4_4:24647762-24647781 | Msa0675540:CDS | 50.0% | |
| ACCACCGACATCACATACCA+TGG | + | chr4_4:24647766-24647785 | None:intergenic | 50.0% | |
| AGACACCTTCTCGAGAAGGA+AGG | - | chr4_4:24647845-24647864 | Msa0675540:CDS | 50.0% | |
| CATCTCCTTCCTTCTCGAGA+AGG | + | chr4_4:24647853-24647872 | None:intergenic | 50.0% | |
| CTTCTCGAGAAGGAAGGAGA+TGG | - | chr4_4:24647851-24647870 | Msa0675540:CDS | 50.0% | |
| ! | ATGCCATTTGCCCCGTTTGT+TGG | - | chr4_4:24648061-24648080 | Msa0675540:CDS | 50.0% |
| ACACCAACAAACGGGGCAAA+TGG | + | chr4_4:24648067-24648086 | None:intergenic | 50.0% | |
| GGCTAAGGTGTATGTCTTCG+AGG | - | chr4_4:24648173-24648192 | Msa0675540:CDS | 50.0% | |
| CTAGGCATAGGTGGTGTCTA+TGG | - | chr4_4:24648266-24648285 | Msa0675540:intron | 50.0% | |
| CCGGAATGTCAACAACACAG+AGG | - | chr4_4:24648515-24648534 | Msa0675540:intron | 50.0% | |
| !! | GTCATCTAGCTCTCCATCAG+GGG | + | chr4_4:24647262-24647281 | None:intergenic | 50.0% |
| !! | CGTCATCTAGCTCTCCATCA+GGG | + | chr4_4:24647263-24647282 | None:intergenic | 50.0% |
| CCTGATGGAGAGCTAGATGA+CGG | - | chr4_4:24647261-24647280 | Msa0675540:CDS | 50.0% | |
| AAACGATCAGGCAGGTGTAC+GGG | - | chr4_4:24647722-24647741 | Msa0675540:CDS | 50.0% | |
| TCCATGGTATGTGATGTCGG+TGG | - | chr4_4:24647762-24647781 | Msa0675540:CDS | 50.0% | |
| ACCACCGACATCACATACCA+TGG | + | chr4_4:24647766-24647785 | None:intergenic | 50.0% | |
| AGACACCTTCTCGAGAAGGA+AGG | - | chr4_4:24647845-24647864 | Msa0675540:CDS | 50.0% | |
| CATCTCCTTCCTTCTCGAGA+AGG | + | chr4_4:24647853-24647872 | None:intergenic | 50.0% | |
| CTTCTCGAGAAGGAAGGAGA+TGG | - | chr4_4:24647851-24647870 | Msa0675540:CDS | 50.0% | |
| ! | ATGCCATTTGCCCCGTTTGT+TGG | - | chr4_4:24648061-24648080 | Msa0675540:CDS | 50.0% |
| ACACCAACAAACGGGGCAAA+TGG | + | chr4_4:24648067-24648086 | None:intergenic | 50.0% | |
| GGCTAAGGTGTATGTCTTCG+AGG | - | chr4_4:24648173-24648192 | Msa0675540:CDS | 50.0% | |
| CTAGGCATAGGTGGTGTCTA+TGG | - | chr4_4:24648266-24648285 | Msa0675540:intron | 50.0% | |
| CCGGAATGTCAACAACACAG+AGG | - | chr4_4:24648515-24648534 | Msa0675540:intron | 50.0% | |
| !! | CCGTCATCTAGCTCTCCATC+AGG | + | chr4_4:24647264-24647283 | None:intergenic | 55.0% |
| TCGAGAAGGAAGGAGATGGC+AGG | - | chr4_4:24647855-24647874 | Msa0675540:CDS | 55.0% | |
| CGAGAAGGAAGGAGATGGCA+GGG | - | chr4_4:24647856-24647875 | Msa0675540:CDS | 55.0% | |
| TCTGGGCTGATGCACGTAGT+AGG | - | chr4_4:24647972-24647991 | Msa0675540:CDS | 55.0% | |
| CGACAACGCACTCCAAGACA+AGG | - | chr4_4:24648612-24648631 | Msa0675540:intron | 55.0% | |
| !! | CCGTCATCTAGCTCTCCATC+AGG | + | chr4_4:24647264-24647283 | None:intergenic | 55.0% |
| TCGAGAAGGAAGGAGATGGC+AGG | - | chr4_4:24647855-24647874 | Msa0675540:CDS | 55.0% | |
| CGAGAAGGAAGGAGATGGCA+GGG | - | chr4_4:24647856-24647875 | Msa0675540:CDS | 55.0% | |
| TCTGGGCTGATGCACGTAGT+AGG | - | chr4_4:24647972-24647991 | Msa0675540:CDS | 55.0% | |
| CGACAACGCACTCCAAGACA+AGG | - | chr4_4:24648612-24648631 | Msa0675540:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 24647216 | 24649020 | 24647216 | ID=Msa0675540;Name=Msa0675540 |
| chr4_4 | mRNA | 24647216 | 24649020 | 24647216 | ID=Msa0675540-mRNA-1;Parent=Msa0675540;Name=Msa0675540-mRNA-1;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|0.66|3|0|491 |
| chr4_4 | exon | 24648633 | 24649020 | 24648633 | ID=Msa0675540-mRNA-1:exon:6764;Parent=Msa0675540-mRNA-1 |
| chr4_4 | exon | 24648469 | 24648500 | 24648469 | ID=Msa0675540-mRNA-1:exon:6763;Parent=Msa0675540-mRNA-1 |
| chr4_4 | exon | 24647216 | 24648271 | 24647216 | ID=Msa0675540-mRNA-1:exon:6762;Parent=Msa0675540-mRNA-1 |
| chr4_4 | CDS | 24648633 | 24649020 | 24648633 | ID=Msa0675540-mRNA-1:cds;Parent=Msa0675540-mRNA-1 |
| chr4_4 | CDS | 24648469 | 24648500 | 24648469 | ID=Msa0675540-mRNA-1:cds;Parent=Msa0675540-mRNA-1 |
| chr4_4 | CDS | 24647216 | 24648271 | 24647216 | ID=Msa0675540-mRNA-1:cds;Parent=Msa0675540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
