Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0676070 | TQD73607.1 | 36.301 | 292 | 95 | 12 | 26 | 228 | 403 | 692 | 3.04e-28 | 123 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0676070 | sp|Q9S9M1|WAKLE_ARATH | 31.677 | 161 | 59 | 2 | 26 | 135 | 471 | 631 | 5.06e-16 | 80.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0676070 | A0A540KHC9 | 36.301 | 292 | 95 | 12 | 26 | 228 | 403 | 692 | 1.45e-28 | 123 |
Gene ID | Type | Classification |
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Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0676070 | MtrunA17_Chr3g0125491 | 41.279 | 172 | 45 | 4 | 18 | 135 | 87 | 256 | 8.65e-30 | 113 |
Msa0676070 | MtrunA17_Chr3g0125491 | 33.108 | 148 | 49 | 4 | 131 | 228 | 89 | 236 | 8.66e-13 | 66.6 |
Msa0676070 | MtrunA17_Chr3g0125461 | 41.718 | 163 | 40 | 3 | 26 | 135 | 483 | 643 | 4.67e-27 | 108 |
Msa0676070 | MtrunA17_Chr3g0125461 | 34.375 | 192 | 60 | 7 | 89 | 228 | 446 | 623 | 2.59e-15 | 74.7 |
Msa0676070 | MtrunA17_Chr3g0125431 | 41.718 | 163 | 40 | 3 | 26 | 135 | 465 | 625 | 1.16e-26 | 107 |
Msa0676070 | MtrunA17_Chr3g0125431 | 37.162 | 148 | 43 | 4 | 131 | 228 | 458 | 605 | 1.61e-14 | 72.4 |
Msa0676070 | MtrunA17_Chr2g0279661 | 40.491 | 163 | 42 | 3 | 26 | 135 | 470 | 630 | 3.76e-25 | 103 |
Msa0676070 | MtrunA17_Chr3g0125441 | 40.491 | 163 | 42 | 3 | 26 | 135 | 495 | 655 | 9.60e-25 | 102 |
Msa0676070 | MtrunA17_Chr3g0125441 | 36.486 | 148 | 44 | 5 | 131 | 228 | 488 | 635 | 8.88e-14 | 70.1 |
Msa0676070 | MtrunA17_Chr3g0125471 | 41.104 | 163 | 41 | 3 | 26 | 135 | 400 | 560 | 2.51e-24 | 100 |
Msa0676070 | MtrunA17_Chr3g0125471 | 34.375 | 192 | 60 | 8 | 89 | 228 | 363 | 540 | 1.84e-14 | 72.0 |
Msa0676070 | MtrunA17_Chr3g0125451 | 39.264 | 163 | 44 | 3 | 26 | 135 | 460 | 620 | 5.41e-24 | 99.8 |
Msa0676070 | MtrunA17_Chr3g0125451 | 35.135 | 148 | 46 | 4 | 131 | 228 | 453 | 600 | 1.10e-13 | 69.7 |
Msa0676070 | MtrunA17_Chr1g0158211 | 36.420 | 162 | 51 | 3 | 26 | 135 | 188 | 349 | 7.69e-19 | 84.7 |
Msa0676070 | MtrunA17_Chr1g0158201 | 36.420 | 162 | 51 | 3 | 26 | 135 | 450 | 611 | 3.91e-18 | 82.8 |
Msa0676070 | MtrunA17_Chr2g0293081 | 34.356 | 163 | 52 | 3 | 26 | 135 | 435 | 595 | 5.31e-18 | 82.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0676070 | AT1G16130.1 | 33.540 | 161 | 56 | 2 | 26 | 135 | 455 | 615 | 4.47e-18 | 83.2 |
Msa0676070 | AT1G79670.1 | 32.727 | 165 | 56 | 3 | 26 | 137 | 460 | 622 | 1.99e-17 | 81.3 |
Msa0676070 | AT1G79670.2 | 32.727 | 165 | 56 | 3 | 26 | 137 | 423 | 585 | 2.00e-17 | 81.3 |
Msa0676070 | AT1G16160.1 | 31.677 | 161 | 59 | 2 | 26 | 135 | 471 | 631 | 5.15e-17 | 80.1 |
Msa0676070 | AT1G69730.1 | 32.317 | 164 | 55 | 4 | 26 | 135 | 486 | 647 | 5.73e-16 | 77.0 |
Msa0676070 | AT1G19390.1 | 28.866 | 194 | 85 | 3 | 26 | 168 | 490 | 681 | 9.45e-16 | 76.3 |
Msa0676070 | AT1G16120.1 | 31.677 | 161 | 59 | 2 | 26 | 135 | 468 | 628 | 4.06e-15 | 74.3 |
Msa0676070 | AT1G16110.1 | 32.317 | 164 | 58 | 3 | 26 | 136 | 471 | 634 | 9.87e-15 | 73.2 |
Find 34 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACATTTATATGGTTGATTT+TGG | 0.093360 | 4_4:+26096199 | Msa0676060:intron |
ACTCTAATGCAAGGGATATT+TGG | 0.135372 | 4_4:-26097216 | Msa0676070:intron |
TAGAAATGTGGTAATTCTTA+TGG | 0.174431 | 4_4:-26097542 | Msa0676070:CDS |
ACACTTGTTTGCAAGTATTC+TGG | 0.209861 | 4_4:+26095843 | Msa0676060:intron |
CCACATTTCTATGATTGATT+TGG | 0.235540 | 4_4:+26097554 | None:intergenic |
CACATTTCTATGATTGATTT+GGG | 0.299102 | 4_4:+26097555 | None:intergenic |
GGAGAAGTTCGTTAATAAAA+TGG | 0.299762 | 4_4:-26096231 | Msa0676070:CDS |
AAAGAATCACCACATTTATA+TGG | 0.306204 | 4_4:+26096189 | Msa0676060:intron |
CTCTAATGCAAGGGATATTT+GGG | 0.332847 | 4_4:-26097215 | Msa0676070:intron |
CACTTGTTTGCAAGTATTCT+GGG | 0.341278 | 4_4:+26095844 | Msa0676060:intron |
TCAGAATCTACTAAGAACTA+TGG | 0.355941 | 4_4:-26098949 | None:intergenic |
ACTCTACTGCAGGGGACATT+GGG | 0.366643 | 4_4:-26095876 | Msa0676070:CDS |
TCCATGTAATATTTAAAGAT+TGG | 0.375100 | 4_4:+26097437 | None:intergenic |
CACTCTACTGCAGGGGACAT+TGG | 0.379445 | 4_4:-26095877 | Msa0676070:CDS |
AGAAATGTGGTAATTCTTAT+GGG | 0.420318 | 4_4:-26097541 | Msa0676070:CDS |
TCTTTACGAATTTATTGTAA+TGG | 0.446969 | 4_4:-26097490 | Msa0676070:CDS |
ACCAATCTTTAAATATTACA+TGG | 0.494603 | 4_4:-26097438 | Msa0676070:CDS |
TGAATAGCAAAAGGAACGGC+TGG | 0.505813 | 4_4:-26096044 | Msa0676070:intron |
ACAATAAATTCGTAAAGAAG+TGG | 0.515633 | 4_4:+26097495 | None:intergenic |
TCAGATAACCACTCTACTGC+AGG | 0.517517 | 4_4:-26095886 | Msa0676070:intron |
TAACAAAATACACGTATGAC+AGG | 0.537961 | 4_4:+26097377 | None:intergenic |
AATCTACTAAGAACTATGGT+TGG | 0.544186 | 4_4:-26098945 | Msa0676070:CDS |
CAGCATTATGTAAATATGAC+GGG | 0.544990 | 4_4:+26096018 | Msa0676060:intron |
GCAGCATTATGTAAATATGA+CGG | 0.563347 | 4_4:+26096017 | Msa0676060:intron |
CTCTCTAAGCTACAAAACTC+AGG | 0.573971 | 4_4:-26098892 | Msa0676070:intron |
ACGAACACTTTATTGACGAA+AGG | 0.577677 | 4_4:+26097583 | None:intergenic |
CAGATAACCACTCTACTGCA+GGG | 0.594701 | 4_4:-26095885 | Msa0676070:CDS |
GTTATCTGACTATGATCAAG+AGG | 0.598670 | 4_4:+26095900 | Msa0676060:intron |
CAAAATCAACCATATAAATG+TGG | 0.611139 | 4_4:-26096198 | Msa0676070:intron |
CCAAATCAATCATAGAAATG+TGG | 0.613579 | 4_4:-26097554 | Msa0676070:CDS |
CAATGTCCCCTGCAGTAGAG+TGG | 0.627318 | 4_4:+26095878 | Msa0676060:intron |
ATTATGAATAGCAAAAGGAA+CGG | 0.628148 | 4_4:-26096048 | Msa0676070:intron |
CTCTACTGCAGGGGACATTG+GGG | 0.656940 | 4_4:-26095875 | Msa0676070:CDS |
AGATAACCACTCTACTGCAG+GGG | 0.678081 | 4_4:-26095884 | Msa0676070:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTAATTCATATTTAAGAAAA+TGG | + | chr4_4:26096156-26096175 | Msa0676060:intron | 15.0% |
!! | ATATGAATTACAACAAATAT+AGG | - | chr4_4:26096165-26096184 | Msa0676070:intron | 15.0% |
!!! | ATGTTTCTAATCATTTTTTT+TGG | - | chr4_4:26096274-26096293 | Msa0676070:intron | 15.0% |
!! | GATAAAATATTAAAATAGGT+TGG | + | chr4_4:26097943-26097962 | None:intergenic | 15.0% |
!! | GAGTGATAAAATATTAAAAT+AGG | + | chr4_4:26097947-26097966 | None:intergenic | 15.0% |
!! | TATGTTTACTTCATTTATTT+AGG | - | chr4_4:26098526-26098545 | Msa0676070:intron | 15.0% |
!!! | TCTAAAAAGAATGATTTTTC+TGG | + | chr4_4:26095961-26095980 | Msa0676060:intron | 20.0% |
!!! | CAAGAAATTACTTTTCTTTT+TGG | + | chr4_4:26096099-26096118 | Msa0676060:intron | 20.0% |
!!! | ATACTTTTGAAGTAAATAAC+TGG | - | chr4_4:26096323-26096342 | Msa0676070:intron | 20.0% |
!!! | AAAATAACCAATAAGTTGAA+TGG | + | chr4_4:26096386-26096405 | Msa0676060:intron | 20.0% |
!!! | TTTTGTACATTCTAATTTGT+TGG | - | chr4_4:26096402-26096421 | Msa0676070:intron | 20.0% |
!!! | AGAAAAAACTATATTTTTGC+AGG | + | chr4_4:26096579-26096598 | None:intergenic | 20.0% |
!!! | TTCGTTCACATTTTTATATA+TGG | + | chr4_4:26097078-26097097 | None:intergenic | 20.0% |
!! | TCTTTACGAATTTATTGTAA+TGG | - | chr4_4:26097288-26097307 | Msa0676070:intron | 20.0% |
!! | ACCAATCTTTAAATATTACA+TGG | - | chr4_4:26097340-26097359 | Msa0676070:intron | 20.0% |
!! | TCCATGTAATATTTAAAGAT+TGG | + | chr4_4:26097344-26097363 | None:intergenic | 20.0% |
!! | ATAATAGAAAAAGAAATCGT+TGG | - | chr4_4:26097375-26097394 | Msa0676070:intron | 20.0% |
!! | AATAAATGTATGTATCATCT+TGG | - | chr4_4:26097831-26097850 | Msa0676070:intron | 20.0% |
!! | ATAAGGTAAATTTCAAAAGT+GGG | + | chr4_4:26097879-26097898 | None:intergenic | 20.0% |
!! | AATAAGGTAAATTTCAAAAG+TGG | + | chr4_4:26097880-26097899 | None:intergenic | 20.0% |
!!! | TTTTTTAAATAGAGTTTTCG+TGG | - | chr4_4:26098075-26098094 | Msa0676070:intron | 20.0% |
!!! | TTTTTAAATAGAGTTTTCGT+GGG | - | chr4_4:26098076-26098095 | Msa0676070:intron | 20.0% |
!! | TCATCTGAAACAACATTAAA+TGG | + | chr4_4:26096304-26096323 | Msa0676060:intron | 25.0% |
! | TTTCTTCAATGAAAAAAGAC+CGG | + | chr4_4:26096522-26096541 | None:intergenic | 25.0% |
! | GTTTACGAATTTATTCTCAA+TGG | + | chr4_4:26096959-26096978 | None:intergenic | 25.0% |
!! | TAGAAATGTGGTAAAACTTT+TGG | + | chr4_4:26097001-26097020 | None:intergenic | 25.0% |
!! | CACATTTCTATGATTGATTT+GGG | - | chr4_4:26097011-26097030 | Msa0676070:intron | 25.0% |
!! | TCGTTATTTCATCAATGAAA+TGG | + | chr4_4:26097046-26097065 | None:intergenic | 25.0% |
!!! | TATGTTCACTTCATTGATTT+AGG | - | chr4_4:26097170-26097189 | Msa0676070:CDS | 25.0% |
!! | CACATTTCTATGATTGATTT+GGG | + | chr4_4:26097011-26097030 | None:intergenic | 25.0% |
! | TAGAAATGTGGTAATTCTTA+TGG | - | chr4_4:26097236-26097255 | Msa0676070:intron | 25.0% |
! | AGAAATGTGGTAATTCTTAT+GGG | - | chr4_4:26097237-26097256 | Msa0676070:intron | 25.0% |
! | ACAATAAATTCGTAAAGAAG+TGG | + | chr4_4:26097286-26097305 | None:intergenic | 25.0% |
!!! | TTTTTTACTTTGGAGCTTTA+AGG | - | chr4_4:26097503-26097522 | Msa0676070:CDS | 25.0% |
! | TGTTGTATGATTATGATCAA+GGG | + | chr4_4:26097542-26097561 | None:intergenic | 25.0% |
! | TTGTTGTATGATTATGATCA+AGG | + | chr4_4:26097543-26097562 | None:intergenic | 25.0% |
!!! | TATGTTTTTGCAATGTACAT+TGG | - | chr4_4:26097689-26097708 | Msa0676070:intron | 25.0% |
! | ACATTATGGACAAAATTGAT+GGG | - | chr4_4:26097741-26097760 | Msa0676070:intron | 25.0% |
!! | GTTTCTGTATTTAAAGTAGT+CGG | - | chr4_4:26097787-26097806 | Msa0676070:intron | 25.0% |
! | TCAATATAAGCGTTAAAGAT+TGG | - | chr4_4:26098266-26098285 | Msa0676070:intron | 25.0% |
!!! | ATTGAAAGGTGTTAAACTTT+TGG | + | chr4_4:26098365-26098384 | None:intergenic | 25.0% |
! | TAGATTCATTCACATTTCTA+TGG | + | chr4_4:26098442-26098461 | None:intergenic | 25.0% |
!!! | CACATTTATATGGTTGATTT+TGG | + | chr4_4:26098582-26098601 | None:intergenic | 25.0% |
! | CAAAATCAACCATATAAATG+TGG | - | chr4_4:26098580-26098599 | Msa0676070:intron | 25.0% |
! | AAAGAATCACCACATTTATA+TGG | + | chr4_4:26098592-26098611 | None:intergenic | 25.0% |
!! | TATAAATGTGGTGATTCTTT+TGG | - | chr4_4:26098592-26098611 | Msa0676070:intron | 25.0% |
!! | ATAAATGTGGTGATTCTTTT+GGG | - | chr4_4:26098593-26098612 | Msa0676070:intron | 25.0% |
! | ACATGATTATGAATAGCAAA+AGG | - | chr4_4:26098725-26098744 | Msa0676070:intron | 25.0% |
! | ATTATGAATAGCAAAAGGAA+CGG | - | chr4_4:26098730-26098749 | Msa0676070:intron | 25.0% |
AATCTACTAAGAACTATGGT+TGG | - | chr4_4:26095833-26095852 | Msa0676070:CDS | 30.0% | |
! | AATTGATAGTTGCAAATGAC+TGG | + | chr4_4:26096209-26096228 | Msa0676060:intron | 30.0% |
CATTTGCAACTATCAATTTG+TGG | - | chr4_4:26096211-26096230 | Msa0676070:CDS | 30.0% | |
TGAATGTTTCTCCTATTGTA+TGG | - | chr4_4:26096347-26096366 | Msa0676070:intron | 30.0% | |
TCTTGATCCATTCAACTTAT+TGG | - | chr4_4:26096376-26096395 | Msa0676070:intron | 30.0% | |
AAGAAACAAAGTACATTGCA+AGG | - | chr4_4:26096536-26096555 | Msa0676070:intron | 30.0% | |
AGTGGTTATCTATGATTAAG+AGG | - | chr4_4:26096714-26096733 | Msa0676070:intron | 30.0% | |
AGATCACAATCTCATTACAA+AGG | + | chr4_4:26096769-26096788 | None:intergenic | 30.0% | |
TTGTAATGAGATTGTGATCT+AGG | - | chr4_4:26096769-26096788 | Msa0676070:intron | 30.0% | |
ACAATGGCAAAAGAAACTAT+TGG | + | chr4_4:26096872-26096891 | None:intergenic | 30.0% | |
TTGGAATACAAGAATGACAA+TGG | + | chr4_4:26096888-26096907 | None:intergenic | 30.0% | |
!! | ACGAATCTTTAAAGCTTACT+TGG | + | chr4_4:26096907-26096926 | None:intergenic | 30.0% |
CCAAATCAATCATAGAAATG+TGG | + | chr4_4:26097224-26097243 | None:intergenic | 30.0% | |
CCACATTTCTATGATTGATT+TGG | - | chr4_4:26097010-26097029 | Msa0676070:intron | 30.0% | |
TTGAGTCGTTCATCAATAAT+TGG | + | chr4_4:26097106-26097125 | None:intergenic | 30.0% | |
CCACATTTCTATGATTGATT+TGG | + | chr4_4:26097010-26097029 | None:intergenic | 30.0% | |
CCAAATCAATCATAGAAATG+TGG | - | chr4_4:26097224-26097243 | Msa0676070:intron | 30.0% | |
TAACAAAATACACGTATGAC+AGG | + | chr4_4:26097404-26097423 | None:intergenic | 30.0% | |
GTTGTATGATTATGATCAAG+GGG | + | chr4_4:26097541-26097560 | None:intergenic | 30.0% | |
ATACAACAACTCTAATGCAA+GGG | - | chr4_4:26097554-26097573 | Msa0676070:CDS | 30.0% | |
!!! | CACTTGTTTTGAAGGATTTT+GGG | + | chr4_4:26097598-26097617 | None:intergenic | 30.0% |
!!! | ACACTTGTTTTGAAGGATTT+TGG | + | chr4_4:26097599-26097618 | None:intergenic | 30.0% |
!!! | TGTTAAGACACTTGTTTTGA+AGG | + | chr4_4:26097606-26097625 | None:intergenic | 30.0% |
!! | GAGTGATGTCTATAGTTTTA+CGG | - | chr4_4:26097631-26097650 | Msa0676070:intron | 30.0% |
AGACTGTTTACTTCACATTA+TGG | - | chr4_4:26097727-26097746 | Msa0676070:intron | 30.0% | |
CACATTATGGACAAAATTGA+TGG | - | chr4_4:26097740-26097759 | Msa0676070:intron | 30.0% | |
GGAAAATATTGAGCATCTAA+AGG | - | chr4_4:26097762-26097781 | Msa0676070:intron | 30.0% | |
AGAAAAGCAAAAGAAACTGT+TGG | + | chr4_4:26098235-26098254 | None:intergenic | 30.0% | |
ACTTACGAACTTATTCACAA+TGG | + | chr4_4:26098322-26098341 | None:intergenic | 30.0% | |
TCGTTCTTTCATCAATGAAA+TGG | + | chr4_4:26098409-26098428 | None:intergenic | 30.0% | |
! | TGAATCTAATCGTTGATGAA+CGG | - | chr4_4:26098454-26098473 | Msa0676070:intron | 30.0% |
TAACCATAATTGGTGTGATT+TGG | - | chr4_4:26098484-26098503 | Msa0676070:intron | 30.0% | |
AACCATAATTGGTGTGATTT+GGG | - | chr4_4:26098485-26098504 | Msa0676070:intron | 30.0% | |
GGAGAAGTTCGTTAATAAAA+TGG | - | chr4_4:26098547-26098566 | Msa0676070:intron | 30.0% | |
!! | ACCAATCTTTAAAGCTTACA+TGG | - | chr4_4:26098699-26098718 | Msa0676070:intron | 30.0% |
!! | TCCATGTAAGCTTTAAAGAT+TGG | + | chr4_4:26098703-26098722 | None:intergenic | 30.0% |
CAGCATTATGTAAATATGAC+GGG | + | chr4_4:26098763-26098782 | None:intergenic | 30.0% | |
GCAGCATTATGTAAATATGA+CGG | + | chr4_4:26098764-26098783 | None:intergenic | 30.0% | |
!!! | AAAGTTTTTGACTTGCTTCA+AGG | - | chr4_4:26098849-26098868 | Msa0676070:intron | 30.0% |
CAAGAACATGTCCATACAAT+AGG | + | chr4_4:26096361-26096380 | Msa0676060:intron | 35.0% | |
AAGACCAGTTACTTCAAGTA+AGG | - | chr4_4:26096453-26096472 | Msa0676070:intron | 35.0% | |
GTTTCCTTACTTGAAGTAAC+TGG | + | chr4_4:26096460-26096479 | Msa0676060:CDS | 35.0% | |
AGACCGGTTACTTCATATAA+GGG | + | chr4_4:26096506-26096525 | None:intergenic | 35.0% | |
AAGACCGGTTACTTCATATA+AGG | + | chr4_4:26096507-26096526 | None:intergenic | 35.0% | |
!! | ACTATATTTTTGCAGGCTAG+TGG | + | chr4_4:26096572-26096591 | None:intergenic | 35.0% |
! | AGACTGATGTCTATGGTTTT+GGG | + | chr4_4:26096630-26096649 | None:intergenic | 35.0% |
! | AAGACTGATGTCTATGGTTT+TGG | + | chr4_4:26096631-26096650 | None:intergenic | 35.0% |
CCATAATACTTGCAAACAAG+CGG | + | chr4_4:26096664-26096683 | None:intergenic | 35.0% | |
CGCTTGTTTGCAAGTATTAT+GGG | - | chr4_4:26096662-26096681 | Msa0676070:intron | 35.0% | |
ATCCTTGAAGATACAAAGTC+AGG | - | chr4_4:26096741-26096760 | Msa0676070:intron | 35.0% | |
TTCCTGACTTTGTATCTTCA+AGG | + | chr4_4:26096746-26096765 | None:intergenic | 35.0% | |
TTCACATCTCTACGTATGAT+TGG | - | chr4_4:26096807-26096826 | Msa0676070:intron | 35.0% | |
! | CAGTTGAATGAAAGTATGCT+AGG | - | chr4_4:26096838-26096857 | Msa0676070:intron | 35.0% |
! | GAATGAAAGTATGCTAGGAT+AGG | - | chr4_4:26096843-26096862 | Msa0676070:intron | 35.0% |
CGACTCAATCAATCCATAAT+TGG | - | chr4_4:26097118-26097137 | Msa0676070:CDS | 35.0% | |
AATCCATAATTGGTGCGATT+TGG | - | chr4_4:26097128-26097147 | Msa0676070:CDS | 35.0% | |
ATCCATAATTGGTGCGATTT+GGG | - | chr4_4:26097129-26097148 | Msa0676070:CDS | 35.0% | |
ACGAACACTTTATTGACGAA+AGG | + | chr4_4:26097198-26097217 | None:intergenic | 35.0% | |
TCACATCTCTATGCAAGATT+GGG | + | chr4_4:26097435-26097454 | None:intergenic | 35.0% | |
TTCACATCTCTATGCAAGAT+TGG | + | chr4_4:26097436-26097455 | None:intergenic | 35.0% | |
CATACAACAACTCTAATGCA+AGG | - | chr4_4:26097553-26097572 | Msa0676070:CDS | 35.0% | |
ACTCTAATGCAAGGGATATT+TGG | - | chr4_4:26097562-26097581 | Msa0676070:CDS | 35.0% | |
CTCTAATGCAAGGGATATTT+GGG | - | chr4_4:26097563-26097582 | Msa0676070:CDS | 35.0% | |
! | TGTATCATCTTGGTCTTCAT+CGG | - | chr4_4:26097841-26097860 | Msa0676070:intron | 35.0% |
GGTACTTATTTGACAGGAAA+TGG | + | chr4_4:26097922-26097941 | None:intergenic | 35.0% | |
!! | TAGGTTGGTACTTATTTGAC+AGG | + | chr4_4:26097928-26097947 | None:intergenic | 35.0% |
! | TAAATAGAGTTTTCGTGGGT+AGG | - | chr4_4:26098080-26098099 | Msa0676070:intron | 35.0% |
! | AAATAGAGTTTTCGTGGGTA+GGG | - | chr4_4:26098081-26098100 | Msa0676070:intron | 35.0% |
ACACCTTTCAATGACTGATT+TGG | - | chr4_4:26098373-26098392 | Msa0676070:intron | 35.0% | |
! | CACCTTTCAATGACTGATTT+GGG | - | chr4_4:26098374-26098393 | Msa0676070:intron | 35.0% |
TTCCCAAATCAGTCATTGAA+AGG | + | chr4_4:26098379-26098398 | None:intergenic | 35.0% | |
ACCATAATTGGTGTGATTTG+GGG | - | chr4_4:26098486-26098505 | Msa0676070:intron | 35.0% | |
GTTATCTGACTATGATCAAG+AGG | + | chr4_4:26098881-26098900 | None:intergenic | 35.0% | |
CACTTGTTTGCAAGTATTCT+GGG | + | chr4_4:26098937-26098956 | None:intergenic | 35.0% | |
ACACTTGTTTGCAAGTATTC+TGG | + | chr4_4:26098938-26098957 | None:intergenic | 35.0% | |
!! | CTGAGTTTTGTAGCTTAGAG+AGG | + | chr4_4:26095888-26095907 | Msa0676060:intron | 40.0% |
CTCTCTAAGCTACAAAACTC+AGG | - | chr4_4:26095886-26095905 | Msa0676070:intron | 40.0% | |
GGGGAAATTTGAGCATCTAA+AGG | + | chr4_4:26096485-26096504 | Msa0676060:CDS | 40.0% | |
TCCCCCTTATATGAAGTAAC+CGG | - | chr4_4:26096500-26096519 | Msa0676070:intron | 40.0% | |
ACCGGTTACTTCATATAAGG+GGG | + | chr4_4:26096504-26096523 | None:intergenic | 40.0% | |
GACCGGTTACTTCATATAAG+GGG | + | chr4_4:26096505-26096524 | None:intergenic | 40.0% | |
TTCGTGTGAATAGATCTGCT+AGG | - | chr4_4:26096599-26096618 | Msa0676070:intron | 40.0% | |
!! | GACTGATGTCTATGGTTTTG+GGG | + | chr4_4:26096629-26096648 | None:intergenic | 40.0% |
ACAGAGAAGACTGATGTCTA+TGG | + | chr4_4:26096637-26096656 | None:intergenic | 40.0% | |
CCGCTTGTTTGCAAGTATTA+TGG | - | chr4_4:26096661-26096680 | Msa0676070:intron | 40.0% | |
TCCATAATTGGTGCGATTTG+GGG | - | chr4_4:26097130-26097149 | Msa0676070:CDS | 40.0% | |
! | GTATCATCTTGGTCTTCATC+GGG | - | chr4_4:26097842-26097861 | Msa0676070:intron | 40.0% |
! | AATAGAGTTTTCGTGGGTAG+GGG | - | chr4_4:26098082-26098101 | Msa0676070:intron | 40.0% |
ATCATGGCATACTTGCACTT+AGG | + | chr4_4:26098206-26098225 | None:intergenic | 40.0% | |
AAGTGCAAGTATGCCATGAT+AGG | - | chr4_4:26098206-26098225 | Msa0676070:intron | 40.0% | |
AAACTGTTGGACTCCTATCA+TGG | + | chr4_4:26098222-26098241 | None:intergenic | 40.0% | |
CGGCTCAATCTAACCATAAT+TGG | - | chr4_4:26098474-26098493 | Msa0676070:intron | 40.0% | |
TCCCCAAATCACACCAATTA+TGG | + | chr4_4:26098490-26098509 | None:intergenic | 40.0% | |
! | CCATAATTGGTGCGATTTGG+GGG | - | chr4_4:26097131-26097150 | Msa0676070:CDS | 45.0% |
CTTGTAGATCACAATCTCGC+TGG | - | chr4_4:26097469-26097488 | Msa0676070:CDS | 45.0% | |
! | ATAGAGTTTTCGTGGGTAGG+GGG | - | chr4_4:26098083-26098102 | Msa0676070:intron | 45.0% |
TGAATAGCAAAAGGAACGGC+TGG | - | chr4_4:26098734-26098753 | Msa0676070:intron | 45.0% | |
TCAGATAACCACTCTACTGC+AGG | - | chr4_4:26098892-26098911 | Msa0676070:intron | 45.0% | |
CAGATAACCACTCTACTGCA+GGG | - | chr4_4:26098893-26098912 | Msa0676070:CDS | 45.0% | |
AGATAACCACTCTACTGCAG+GGG | - | chr4_4:26098894-26098913 | Msa0676070:CDS | 45.0% | |
!! | AAAATAATACAAATATATTA+TGG | + | chr4_4:26096126-26096145 | Msa0676060:intron | 5.0% |
!!! | ATATTTTTTTTTTTTTACTT+TGG | - | chr4_4:26097493-26097512 | Msa0676070:CDS | 5.0% |
!! | TAAGATTATAAAATTTAATA+AGG | + | chr4_4:26097896-26097915 | None:intergenic | 5.0% |
!!! | TTAAATTAAACTTTTTTTAA+AGG | + | chr4_4:26098002-26098021 | None:intergenic | 5.0% |
CTGAAGCGCACATGACGTTT+GGG | + | chr4_4:26096696-26096715 | None:intergenic | 50.0% | |
ACTGAAGCGCACATGACGTT+TGG | + | chr4_4:26096697-26096716 | None:intergenic | 50.0% | |
AAACGTCATGTGCGCTTCAG+TGG | - | chr4_4:26096696-26096715 | Msa0676070:intron | 50.0% | |
CCCCCAAATCGCACCAATTA+TGG | + | chr4_4:26097134-26097153 | None:intergenic | 50.0% | |
TTGCACTTAGGCATGGCAAC+GGG | + | chr4_4:26098194-26098213 | None:intergenic | 50.0% | |
CTTGCACTTAGGCATGGCAA+CGG | + | chr4_4:26098195-26098214 | None:intergenic | 50.0% | |
GGCATACTTGCACTTAGGCA+TGG | + | chr4_4:26098201-26098220 | None:intergenic | 50.0% | |
ACTCTACTGCAGGGGACATT+GGG | - | chr4_4:26098902-26098921 | Msa0676070:CDS | 50.0% | |
TTAGGCATGGCAACGGGGAT+GGG | + | chr4_4:26098188-26098207 | None:intergenic | 55.0% | |
TGCACTTAGGCATGGCAACG+GGG | + | chr4_4:26098193-26098212 | None:intergenic | 55.0% | |
CAATGTCCCCTGCAGTAGAG+TGG | + | chr4_4:26098903-26098922 | None:intergenic | 55.0% | |
CACTCTACTGCAGGGGACAT+TGG | - | chr4_4:26098901-26098920 | Msa0676070:CDS | 55.0% | |
CTCTACTGCAGGGGACATTG+GGG | - | chr4_4:26098903-26098922 | Msa0676070:CDS | 55.0% | |
!! | TTTTCGTGGGTAGGGGGTGC+CGG | - | chr4_4:26098089-26098108 | Msa0676070:intron | 60.0% |
!! | GGGTGCCGGGAATCCTGTTT+GGG | - | chr4_4:26098103-26098122 | Msa0676070:intron | 60.0% |
! | GGTGCCGGGAATCCTGTTTG+GGG | - | chr4_4:26098104-26098123 | Msa0676070:intron | 60.0% |
CCGTCCCCAAACAGGATTCC+CGG | + | chr4_4:26098111-26098130 | None:intergenic | 60.0% | |
CCGGGAATCCTGTTTGGGGA+CGG | - | chr4_4:26098108-26098127 | Msa0676070:intron | 60.0% | |
CGGGAATCCTGTTTGGGGAC+GGG | - | chr4_4:26098109-26098128 | Msa0676070:intron | 60.0% | |
GGGAATCCTGTTTGGGGACG+GGG | - | chr4_4:26098110-26098129 | Msa0676070:intron | 60.0% | |
GGAATCCTGTTTGGGGACGG+GGG | - | chr4_4:26098111-26098130 | Msa0676070:intron | 60.0% | |
CTTAGGCATGGCAACGGGGA+TGG | + | chr4_4:26098189-26098208 | None:intergenic | 60.0% | |
!! | TTTCGTGGGTAGGGGGTGCC+GGG | - | chr4_4:26098090-26098109 | Msa0676070:intron | 65.0% |
!! | GGGGTGCCGGGAATCCTGTT+TGG | - | chr4_4:26098102-26098121 | Msa0676070:intron | 65.0% |
CAGGGGTGGGTGCATGGAAG+CGG | - | chr4_4:26098134-26098153 | Msa0676070:intron | 65.0% | |
AGGGGTGGGTGCATGGAAGC+GGG | - | chr4_4:26098135-26098154 | Msa0676070:intron | 65.0% | |
ATGGCAACGGGGATGGGTCG+GGG | + | chr4_4:26098182-26098201 | None:intergenic | 65.0% | |
CATGGCAACGGGGATGGGTC+GGG | + | chr4_4:26098183-26098202 | None:intergenic | 65.0% | |
GCATGGCAACGGGGATGGGT+CGG | + | chr4_4:26098184-26098203 | None:intergenic | 65.0% | |
TCCTGTTTGGGGACGGGGGC+AGG | - | chr4_4:26098115-26098134 | Msa0676070:intron | 70.0% | |
CCTGTTTGGGGACGGGGGCA+GGG | - | chr4_4:26098116-26098135 | Msa0676070:intron | 70.0% | |
CTGTTTGGGGACGGGGGCAG+GGG | - | chr4_4:26098117-26098136 | Msa0676070:intron | 70.0% | |
GGGGTGGGTGCATGGAAGCG+GGG | - | chr4_4:26098136-26098155 | Msa0676070:intron | 70.0% | |
GGGTGGGTGCATGGAAGCGG+GGG | - | chr4_4:26098137-26098156 | Msa0676070:intron | 70.0% | |
TGGGTGCATGGAAGCGGGGG+CGG | - | chr4_4:26098140-26098159 | Msa0676070:intron | 70.0% | |
TGGCAACGGGGATGGGTCGG+GGG | + | chr4_4:26098181-26098200 | None:intergenic | 70.0% | |
CCCTGCCCCCGTCCCCAAAC+AGG | + | chr4_4:26098119-26098138 | None:intergenic | 75.0% | |
TTTGGGGACGGGGGCAGGGG+TGG | - | chr4_4:26098120-26098139 | Msa0676070:intron | 75.0% | |
TTGGGGACGGGGGCAGGGGT+GGG | - | chr4_4:26098121-26098140 | Msa0676070:intron | 75.0% | |
AACGGGGATGGGTCGGGGGC+AGG | + | chr4_4:26098177-26098196 | None:intergenic | 75.0% | |
! | CGGGGGCAGGGGTGGGTGCA+TGG | - | chr4_4:26098128-26098147 | Msa0676070:intron | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_4 | gene | 26095833 | 26098967 | 26095833 | ID=Msa0676070;Name=Msa0676070 |
chr4_4 | mRNA | 26095833 | 26098967 | 26095833 | ID=Msa0676070-mRNA-1;Parent=Msa0676070;Name=Msa0676070-mRNA-1;_AED=0.28;_eAED=0.37;_QI=0|0|0|0.83|0|0.16|6|0|228 |
chr4_4 | exon | 26098893 | 26098967 | 26098893 | ID=Msa0676070-mRNA-1:exon:7007;Parent=Msa0676070-mRNA-1 |
chr4_4 | exon | 26097390 | 26097608 | 26097390 | ID=Msa0676070-mRNA-1:exon:7006;Parent=Msa0676070-mRNA-1 |
chr4_4 | exon | 26097109 | 26097225 | 26097109 | ID=Msa0676070-mRNA-1:exon:7005;Parent=Msa0676070-mRNA-1 |
chr4_4 | exon | 26096199 | 26096252 | 26096199 | ID=Msa0676070-mRNA-1:exon:7004;Parent=Msa0676070-mRNA-1 |
chr4_4 | exon | 26095910 | 26096059 | 26095910 | ID=Msa0676070-mRNA-1:exon:7003;Parent=Msa0676070-mRNA-1 |
chr4_4 | exon | 26095833 | 26095904 | 26095833 | ID=Msa0676070-mRNA-1:exon:7002;Parent=Msa0676070-mRNA-1 |
chr4_4 | CDS | 26098893 | 26098967 | 26098893 | ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1 |
chr4_4 | CDS | 26097390 | 26097608 | 26097390 | ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1 |
chr4_4 | CDS | 26097109 | 26097225 | 26097109 | ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1 |
chr4_4 | CDS | 26096199 | 26096252 | 26096199 | ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1 |
chr4_4 | CDS | 26095910 | 26096059 | 26095910 | ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1 |
chr4_4 | CDS | 26095833 | 26095904 | 26095833 | ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1 |
Gene Sequence |
Protein sequence |