AlfalfaGEDB | Msa0676070

M. sativa cultivar zhongmu-4 / Msa0676070

KEGG: -
GO: GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005975 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055082 GO:0060560 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0140096 GO:1901564 GO:1901700
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0676070	TQD73607.1	36.301	292	95	12	26	228	403	692	3.04e-28	123

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0676070	sp\|Q9S9M1\|WAKLE_ARATH	31.677	161	59	2	26	135	471	631	5.06e-16	80.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0676070	A0A540KHC9	36.301	292	95	12	26	228	403	692	1.45e-28	123

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0676070	MtrunA17_Chr3g0125491	41.279	172	45	4	18	135	87	256	8.65e-30	113
Msa0676070	MtrunA17_Chr3g0125491	33.108	148	49	4	131	228	89	236	8.66e-13	66.6
Msa0676070	MtrunA17_Chr3g0125461	41.718	163	40	3	26	135	483	643	4.67e-27	108
Msa0676070	MtrunA17_Chr3g0125461	34.375	192	60	7	89	228	446	623	2.59e-15	74.7
Msa0676070	MtrunA17_Chr3g0125431	41.718	163	40	3	26	135	465	625	1.16e-26	107
Msa0676070	MtrunA17_Chr3g0125431	37.162	148	43	4	131	228	458	605	1.61e-14	72.4
Msa0676070	MtrunA17_Chr2g0279661	40.491	163	42	3	26	135	470	630	3.76e-25	103
Msa0676070	MtrunA17_Chr3g0125441	40.491	163	42	3	26	135	495	655	9.60e-25	102
Msa0676070	MtrunA17_Chr3g0125441	36.486	148	44	5	131	228	488	635	8.88e-14	70.1
Msa0676070	MtrunA17_Chr3g0125471	41.104	163	41	3	26	135	400	560	2.51e-24	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0676070	AT1G16130.1	33.540	161	56	2	26	135	455	615	4.47e-18	83.2
Msa0676070	AT1G79670.1	32.727	165	56	3	26	137	460	622	1.99e-17	81.3
Msa0676070	AT1G79670.2	32.727	165	56	3	26	137	423	585	2.00e-17	81.3
Msa0676070	AT1G16160.1	31.677	161	59	2	26	135	471	631	5.15e-17	80.1
Msa0676070	AT1G69730.1	32.317	164	55	4	26	135	486	647	5.73e-16	77.0
Msa0676070	AT1G19390.1	28.866	194	85	3	26	168	490	681	9.45e-16	76.3
Msa0676070	AT1G16120.1	31.677	161	59	2	26	135	468	628	4.06e-15	74.3
Msa0676070	AT1G16110.1	32.317	164	58	3	26	136	471	634	9.87e-15	73.2

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Find 34 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATCACCACATTTATA+TGG	0.306204	4_4:+26096189	Msa0676060:intron
AATCTACTAAGAACTATGGT+TGG	0.544186	4_4:-26098945	Msa0676070:CDS
ACAATAAATTCGTAAAGAAG+TGG	0.515633	4_4:+26097495	None:intergenic
ACACTTGTTTGCAAGTATTC+TGG	0.209861	4_4:+26095843	Msa0676060:intron
ACCAATCTTTAAATATTACA+TGG	0.494603	4_4:-26097438	Msa0676070:CDS
ACGAACACTTTATTGACGAA+AGG	0.577677	4_4:+26097583	None:intergenic
ACTCTAATGCAAGGGATATT+TGG	0.135372	4_4:-26097216	Msa0676070:intron
ACTCTACTGCAGGGGACATT+GGG	0.366643	4_4:-26095876	Msa0676070:CDS
AGAAATGTGGTAATTCTTAT+GGG	0.420318	4_4:-26097541	Msa0676070:CDS
AGATAACCACTCTACTGCAG+GGG	0.678081	4_4:-26095884	Msa0676070:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCTACTAAGAACTATGGT+TGG	-	chr4_4:26095833-26095852	Msa0676070:CDS	30.0%
CATTTGCAACTATCAATTTG+TGG	-	chr4_4:26096211-26096230	Msa0676070:CDS	30.0%
TGAATGTTTCTCCTATTGTA+TGG	-	chr4_4:26096347-26096366	Msa0676070:intron	30.0%
TCTTGATCCATTCAACTTAT+TGG	-	chr4_4:26096376-26096395	Msa0676070:intron	30.0%
AAGAAACAAAGTACATTGCA+AGG	-	chr4_4:26096536-26096555	Msa0676070:intron	30.0%
AGTGGTTATCTATGATTAAG+AGG	-	chr4_4:26096714-26096733	Msa0676070:intron	30.0%
AGATCACAATCTCATTACAA+AGG	+	chr4_4:26096769-26096788	None:intergenic	30.0%
TTGTAATGAGATTGTGATCT+AGG	-	chr4_4:26096769-26096788	Msa0676070:intron	30.0%
ACAATGGCAAAAGAAACTAT+TGG	+	chr4_4:26096872-26096891	None:intergenic	30.0%
TTGGAATACAAGAATGACAA+TGG	+	chr4_4:26096888-26096907	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	26095833	26098967	26095833	ID=Msa0676070;Name=Msa0676070
chr4_4	mRNA	26095833	26098967	26095833	ID=Msa0676070-mRNA-1;Parent=Msa0676070;Name=Msa0676070-mRNA-1;_AED=0.28;_eAED=0.37;_QI=0\|0\|0\|0.83\|0\|0.16\|6\|0\|228
chr4_4	exon	26098893	26098967	26098893	ID=Msa0676070-mRNA-1:exon:7007;Parent=Msa0676070-mRNA-1
chr4_4	exon	26097390	26097608	26097390	ID=Msa0676070-mRNA-1:exon:7006;Parent=Msa0676070-mRNA-1
chr4_4	exon	26097109	26097225	26097109	ID=Msa0676070-mRNA-1:exon:7005;Parent=Msa0676070-mRNA-1
chr4_4	exon	26096199	26096252	26096199	ID=Msa0676070-mRNA-1:exon:7004;Parent=Msa0676070-mRNA-1
chr4_4	exon	26095910	26096059	26095910	ID=Msa0676070-mRNA-1:exon:7003;Parent=Msa0676070-mRNA-1
chr4_4	exon	26095833	26095904	26095833	ID=Msa0676070-mRNA-1:exon:7002;Parent=Msa0676070-mRNA-1
chr4_4	CDS	26098893	26098967	26098893	ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1
chr4_4	CDS	26097390	26097608	26097390	ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1
chr4_4	CDS	26097109	26097225	26097109	ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1
chr4_4	CDS	26096199	26096252	26096199	ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1
chr4_4	CDS	26095910	26096059	26095910	ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1
chr4_4	CDS	26095833	26095904	26095833	ID=Msa0676070-mRNA-1:cds;Parent=Msa0676070-mRNA-1

Gene Sequence

>Msa0676070

AATCTACTAAGAACTATGGTTGGCTATAATAGTGAAAATCACTGTTTTATCTCCTCTCTAAGCTACAAAACTCAGGAGCCTTTCGTCAATAAAGTGTTCGTTCTTTCCCAAATCAATCATAGAAATGTGGTAATTCTTATGGGTTGTTTTTTTAGAGAAAAAAGATCCACTTCTTTACGAATTTATTGTAATGGTAGTGTTTATTATCGTCATCATGATCAAAACCAATCTTTAAATATTACATGGAATACAAGATTGATAATAGAAAAAGAAATCGTTGGAGTCCTGTCATACGGATATTTGGGTATCTTTGACCCAAAATCCTTCAAAACAAGTGTCTTAACAGAGAAGAGTGATGTCTATAGTTTTACGGTTCTCTTAGCAGAGCTACTCACAGAAAGAAAACAATATGAGAAGTTCGTTAATAAAATGGTCGTTCTTTCCAAAATCAACCATATAAATGTGCAAAAGGAACGGCTGGAGTCCCGTCATATTTACATAATGCTGCTTCTACATCAAATCTTACATGATGTTAAATTTACAAATATACTCTTAGATCACAATCTTACTGCAAAAGTTTTTGACTTGCTTCAAGGATTGTTCCTCTTGATCATAATAACCACTCTACTGCAGGGGACATTGGGGTATCTTGACCCAGAATACTTGCAAACAAGTGTCTTAACATAG

Protein sequence

>Msa0676070

NLLRTMVGYNSENHCFISSLSYKTQEPFVNKVFVLSQINHRNVVILMGCFFREKRSTSLRIYCNGSVYYRHHDQNQSLNITWNTRLIIEKEIVGVLSYGYLGIFDPKSFKTSVLTEKSDVYSFTVLLAELLTERKQYEKFVNKMVVLSKINHINVQKERLESRHIYIMLLLHQILHDVKFTNILLDHNLTAKVFDLLQGLFLLIIITTLLQGTLGYLDPEYLQTSVLT*