AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0677280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677280 MtrunA17_Chr4g0031961 75.641 312 20 5 1 272 1 296 4.84e-122 351
Msa0677280 MtrunA17_Chr7g0255711 60.526 114 19 3 94 183 86 197 1.35e-33 124
Msa0677280 MtrunA17_Chr4g0074401 66.667 63 21 0 96 158 200 262 2.71e-21 93.6
Msa0677280 MtrunA17_Chr2g0304841 69.091 55 17 0 98 152 212 266 2.28e-20 90.9
Msa0677280 MtrunA17_Chr4g0074411 66.667 63 21 0 96 158 198 260 3.06e-20 90.5
Msa0677280 MtrunA17_Chr4g0067981 66.102 59 20 0 94 152 210 268 4.14e-20 90.1
Msa0677280 MtrunA17_Chr2g0294911 32.955 176 102 2 25 184 136 311 9.11e-20 89.0
Msa0677280 MtrunA17_Chr3g0137101 46.809 94 45 1 98 186 197 290 5.19e-19 87.0
Msa0677280 MtrunA17_Chr1g0161431 50.000 84 38 1 69 152 174 253 1.53e-18 85.5
Msa0677280 MtrunA17_Chr7g0275891 39.850 133 52 3 98 217 190 307 8.50e-18 82.4
Msa0677280 MtrunA17_Chr1g0149841 65.455 55 19 0 98 152 190 244 1.09e-17 82.8
Msa0677280 MtrunA17_Chr6g0473731 56.140 57 25 0 96 152 92 148 1.17e-16 79.7
Msa0677280 MtrunA17_Chr4g0074421 61.818 55 21 0 94 148 128 182 2.47e-16 75.9
Msa0677280 MtrunA17_Chr8g0376881 47.727 88 38 2 81 160 190 277 4.37e-16 78.2
Msa0677280 MtrunA17_Chr4g0054981 60.000 55 22 0 98 152 309 363 5.89e-16 77.8
Msa0677280 MtrunA17_Chr5g0400241 58.182 55 23 0 98 152 310 364 2.20e-15 75.9
Msa0677280 MtrunA17_Chr1g0149831 63.636 55 17 1 98 152 127 178 2.23e-15 73.6
Msa0677280 MtrunA17_Chr4g0009851 50.000 66 32 1 86 151 157 221 8.55e-15 73.2
Msa0677280 MtrunA17_Chr4g0040481 34.286 105 49 1 67 151 106 210 1.81e-14 73.2
Msa0677280 MtrunA17_Chr1g0197171 54.688 64 28 1 99 161 44 107 3.37e-14 71.2
Msa0677280 MtrunA17_Chr2g0324891 34.043 141 71 4 98 238 160 278 3.48e-14 72.4
Msa0677280 MtrunA17_Chr3g0123131 38.017 121 64 3 98 207 198 318 4.53e-14 72.0
Msa0677280 MtrunA17_Chr1g0190301 47.059 85 43 2 80 163 157 240 4.56e-14 71.6
Msa0677280 MtrunA17_Chr8g0356501 53.623 69 30 2 85 152 24 91 7.23e-14 70.9
Msa0677280 MtrunA17_Chr4g0009981 42.500 80 38 2 73 151 96 168 1.28e-13 69.3
Msa0677280 MtrunA17_Chr5g0417521 40.000 100 52 4 96 187 12 111 1.33e-13 70.1
Msa0677280 MtrunA17_Chr7g0275401 55.556 54 24 0 98 151 191 244 1.42e-13 69.7
Msa0677280 MtrunA17_Chr2g0321461 42.000 100 50 3 96 192 42 136 1.68e-13 70.1
Msa0677280 MtrunA17_Chr3g0134481 50.943 53 26 0 98 150 131 183 2.16e-13 67.4
Msa0677280 MtrunA17_Chr2g0310011 50.704 71 33 2 85 154 22 91 2.22e-13 69.3
Msa0677280 MtrunA17_Chr1g0149851 48.571 70 21 1 98 152 190 259 2.83e-13 69.7
Msa0677280 MtrunA17_Chr7g0261911 51.562 64 30 1 99 161 262 325 3.03e-13 69.7
Msa0677280 MtrunA17_Chr5g0409731 38.614 101 55 2 99 198 25 119 3.05e-13 68.6
Msa0677280 MtrunA17_Chr2g0290991 55.932 59 25 1 99 156 39 97 3.94e-13 68.6
Msa0677280 MtrunA17_Chr2g0291021 52.381 63 29 1 99 160 49 111 5.68e-13 68.2
Msa0677280 MtrunA17_Chr6g0461641 52.542 59 27 1 96 153 39 97 9.69e-13 67.8
Msa0677280 MtrunA17_Chr1g0198601 46.377 69 36 1 95 162 207 275 9.83e-13 67.8
Msa0677280 MtrunA17_Chr7g0243081 41.000 100 47 2 64 151 25 124 1.06e-12 67.4
Msa0677280 MtrunA17_Chr7g0274471 51.613 62 29 1 99 159 218 279 1.43e-12 67.4
Msa0677280 MtrunA17_Chr4g0062921 46.154 78 36 2 87 158 218 295 1.61e-12 67.4
Msa0677280 MtrunA17_Chr4g0009901 39.326 89 48 1 64 152 139 221 2.53e-12 65.9
Msa0677280 MtrunA17_Chr4g0045361 50.847 59 28 1 95 152 270 328 3.07e-12 66.2
Msa0677280 MtrunA17_Chr1g0175081 49.091 55 27 1 101 154 24 78 7.53e-12 60.8
Msa0677280 MtrunA17_Chr7g0254981 50.000 62 30 1 99 159 50 111 1.50e-11 63.5
Msa0677280 MtrunA17_Chr6g0471041 46.429 56 30 0 98 153 171 226 1.70e-11 64.3
Msa0677280 MtrunA17_Chr8g0379121 42.857 98 51 3 89 185 101 194 1.75e-11 64.3
Msa0677280 MtrunA17_Chr1g0162931 49.231 65 32 1 88 151 7 71 1.86e-11 63.2
Msa0677280 MtrunA17_Chr1g0210911 50.794 63 30 1 90 151 13 75 2.39e-11 63.5
Msa0677280 MtrunA17_Chr4g0042451 50.000 58 28 1 96 152 14 71 2.40e-11 63.5
Msa0677280 MtrunA17_Chr3g0134461 54.902 51 23 0 98 148 142 192 3.53e-11 61.2
Msa0677280 MtrunA17_Chr2g0320231 53.125 64 29 1 89 151 87 150 5.87e-11 62.4
Msa0677280 MtrunA17_Chr5g0422621 50.000 56 27 1 98 152 197 252 9.56e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677280 AT5G59570.2 48.165 218 88 6 18 210 50 267 1.24e-50 169
Msa0677280 AT5G59570.1 48.165 218 88 6 18 210 50 267 1.24e-50 169
Msa0677280 AT3G46640.2 48.485 231 61 8 1 175 1 229 1.43e-49 167
Msa0677280 AT3G46640.1 48.485 231 61 8 1 175 1 229 1.43e-49 167
Msa0677280 AT3G46640.3 48.485 231 61 8 1 175 1 229 9.75e-49 165
Msa0677280 AT5G05090.1 74.118 85 13 1 95 170 77 161 1.39e-33 124
Msa0677280 AT2G40970.1 65.957 94 15 1 94 170 100 193 4.37e-33 122
Msa0677280 AT3G10760.1 56.303 119 31 2 73 170 70 188 6.01e-33 124
Msa0677280 AT3G16857.3 55.556 72 32 0 81 152 149 220 3.61e-20 90.9
Msa0677280 AT3G16857.2 55.556 72 32 0 81 152 219 290 4.50e-20 90.5
Msa0677280 AT3G16857.1 55.556 72 32 0 81 152 219 290 4.97e-20 90.5
Msa0677280 AT5G58080.1 64.912 57 20 0 96 152 191 247 3.98e-19 87.8
Msa0677280 AT2G25180.1 42.276 123 64 2 30 152 133 248 6.00e-18 84.3
Msa0677280 AT2G01760.3 56.522 69 25 1 98 161 134 202 1.90e-17 81.3
Msa0677280 AT4G31920.1 60.714 56 22 0 98 153 182 237 2.47e-17 82.4
Msa0677280 AT2G01760.1 56.522 69 25 1 98 161 199 267 4.43e-17 80.9
Msa0677280 AT2G01760.2 56.522 69 25 1 98 161 227 295 6.44e-17 80.5
Msa0677280 AT5G44190.1 59.259 54 22 0 98 151 146 199 4.00e-16 78.2
Msa0677280 AT5G44190.2 59.259 54 22 0 98 151 146 199 4.43e-16 77.8
Msa0677280 AT2G20570.1 41.111 90 52 1 62 151 117 205 1.40e-15 76.6
Msa0677280 AT3G04030.2 42.500 80 46 0 96 175 42 121 7.31e-15 74.3
Msa0677280 AT3G12730.1 52.055 73 33 2 81 152 6 77 9.41e-15 72.4
Msa0677280 AT4G18020.8 34.177 158 83 4 99 253 296 435 1.40e-14 73.9
Msa0677280 AT4G18020.11 34.177 158 83 4 99 253 296 435 1.40e-14 73.9
Msa0677280 AT4G18020.4 34.177 158 83 4 99 253 296 435 1.40e-14 73.9
Msa0677280 AT4G18020.5 34.177 158 83 4 99 253 296 435 1.40e-14 73.9
Msa0677280 AT4G18020.10 34.177 158 83 4 99 253 296 435 1.40e-14 73.9
Msa0677280 AT4G18020.7 34.177 158 83 4 99 253 296 435 1.40e-14 73.9
Msa0677280 AT4G18020.3 34.177 158 83 4 99 253 296 435 1.60e-14 73.9
Msa0677280 AT4G18020.2 34.177 158 83 4 99 253 296 435 1.60e-14 73.9
Msa0677280 AT4G18020.1 34.177 158 83 4 99 253 296 435 1.60e-14 73.9
Msa0677280 AT4G18020.6 34.177 158 83 4 99 253 296 435 1.60e-14 73.9
Msa0677280 AT4G18020.9 34.177 158 83 4 99 253 296 435 1.60e-14 73.9
Msa0677280 AT3G24120.1 40.816 98 57 1 99 195 41 138 2.30e-14 72.4
Msa0677280 AT3G24120.2 40.816 98 57 1 99 195 41 138 2.53e-14 72.0
Msa0677280 AT5G07210.2 35.593 118 68 2 35 152 166 275 2.79e-14 73.2
Msa0677280 AT5G07210.1 35.593 118 68 2 35 152 174 283 3.10e-14 73.2
Msa0677280 AT3G04030.1 43.210 81 45 1 96 175 42 122 3.76e-14 72.4
Msa0677280 AT3G04030.3 43.210 81 45 1 96 175 42 122 4.22e-14 72.4
Msa0677280 AT1G79430.2 51.899 79 33 3 78 152 11 88 4.44e-14 72.0
Msa0677280 AT2G20570.2 60.784 51 20 0 101 151 171 221 4.68e-14 72.4
Msa0677280 AT5G45580.1 37.500 120 61 5 99 217 7 113 5.06e-14 70.9
Msa0677280 AT5G45580.2 37.500 120 61 5 99 217 23 129 5.92e-14 70.9
Msa0677280 AT4G13640.1 43.750 96 51 3 99 192 37 131 6.79e-14 70.9
Msa0677280 AT4G13640.2 43.750 96 51 3 99 192 37 131 7.12e-14 70.9
Msa0677280 AT5G18240.2 48.000 75 38 1 96 169 42 116 9.97e-14 71.2
Msa0677280 AT5G18240.3 48.000 75 38 1 96 169 42 116 9.97e-14 71.2
Msa0677280 AT5G18240.5 48.000 75 38 1 96 169 42 116 1.10e-13 71.2
Msa0677280 AT5G18240.1 48.000 75 38 1 96 169 42 116 1.24e-13 70.9
Msa0677280 AT5G18240.4 48.000 75 38 1 96 169 42 116 1.24e-13 70.9
Msa0677280 AT2G01060.1 48.684 76 38 1 86 160 2 77 1.56e-13 69.7
Msa0677280 AT3G62670.1 55.738 61 22 2 98 153 210 270 4.15e-13 69.3
Msa0677280 AT2G03500.1 47.826 69 35 1 93 160 227 295 2.07e-12 67.4
Msa0677280 AT2G27070.1 52.727 55 26 0 98 152 224 278 2.27e-12 67.4
Msa0677280 AT3G13040.3 52.459 61 28 1 98 157 240 300 2.84e-12 67.0
Msa0677280 AT3G13040.1 52.459 61 28 1 98 157 240 300 2.84e-12 67.0
Msa0677280 AT3G13040.2 52.459 61 28 1 98 157 240 300 2.84e-12 67.0
Msa0677280 AT1G67710.3 60.377 53 20 1 101 152 121 173 6.15e-12 65.9
Msa0677280 AT1G67710.2 60.377 53 20 1 101 152 130 182 6.48e-12 65.9
Msa0677280 AT1G67710.1 60.377 53 20 1 101 152 195 247 9.11e-12 65.5
Msa0677280 AT2G40260.1 46.154 78 40 2 90 165 73 150 1.40e-11 64.7
Msa0677280 AT5G49240.1 41.111 90 44 2 59 148 192 272 1.82e-11 63.9
Msa0677280 AT2G38300.1 47.826 69 35 1 84 151 39 107 2.09e-11 63.9
Msa0677280 AT1G49560.1 35.780 109 61 2 90 189 183 291 4.31e-11 63.2
Msa0677280 AT1G13300.1 45.312 64 34 1 98 160 180 243 5.59e-11 62.8
Msa0677280 AT1G25550.1 46.032 63 33 1 98 159 208 270 7.67e-11 62.4

Find 144 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGACCATTCATTATTCT+AGG 0.208986 4_4:+30801977 Msa0677280:three_prime_UTR
AGAAGAAGGTTAACACTTTC+AGG 0.212736 4_4:-30801670 None:intergenic
CTATGATGCATCATATTAAA+TGG 0.267208 4_4:-30799870 None:intergenic
TCACAGATTTACAAACTTCT+TGG 0.277317 4_4:+30801481 Msa0677280:three_prime_UTR
ACACACCCAATATAAGAAAA+TGG 0.290247 4_4:-30801833 None:intergenic
CATTTAATATGATGCATCAT+AGG 0.291545 4_4:+30799871 Msa0677280:CDS
GCTTGAACAAGATCTATAAA+AGG 0.294175 4_4:+30802028 Msa0677280:three_prime_UTR
TTAGAATCAGCTATCTGTTT+AGG 0.301320 4_4:-30801575 None:intergenic
GATGAGTTTGCCTCCTCCTT+CGG 0.309025 4_4:+30799821 Msa0677280:CDS
TGAAGCCTTTCTTGTGGATA+AGG 0.335131 4_4:+30802336 Msa0677280:three_prime_UTR
ACATCATCCACATGGGCATA+TGG 0.344716 4_4:+30799797 Msa0677280:CDS
GTGGATGTTGTTGCTCATCT+TGG 0.347586 4_4:+30799405 Msa0677280:CDS
ATGAGTTTGCCTCCTCCTTC+GGG 0.352579 4_4:+30799822 Msa0677280:CDS
AAACAAGAATTCTCAAGGTT+GGG 0.364633 4_4:-30801951 None:intergenic
CAAATGGTGGGACCCCTTCC+CGG 0.367038 4_4:-30802088 None:intergenic
AGGGGTAACCTTGGCGCAAC+TGG 0.377114 4_4:-30802203 None:intergenic
TTACACAAGAGGCTGTTTCC+AGG 0.378319 4_4:+30802139 Msa0677280:three_prime_UTR
CGGGAAGGGGTCCCACCATT+TGG 0.381455 4_4:+30802089 Msa0677280:three_prime_UTR
TTCAACTTCTTCTACTTCGC+TGG 0.386278 4_4:-30799214 None:intergenic
GCTCCTGCATACGCAGGGTC+CGG 0.400711 4_4:+30802069 Msa0677280:three_prime_UTR
GAACAACGGAGACGATAAAA+AGG 0.405625 4_4:+30799343 Msa0677280:CDS
TATATTGGGTGTGTAGGACT+AGG 0.412630 4_4:+30801842 Msa0677280:three_prime_UTR
CATCATCCACATGGGCATAT+GGG 0.413116 4_4:+30799798 Msa0677280:CDS
TCGAATGGAGGGCATGGAAA+TGG 0.414953 4_4:+30799663 Msa0677280:CDS
AAGAGAGTACGGAGAGGCTC+CGG 0.421773 4_4:-30799105 None:intergenic
CAAATAAAATAATACTAATC+AGG 0.422932 4_4:-30801799 None:intergenic
GCATACGCAGGGTCCGGGAA+GGG 0.423667 4_4:+30802075 Msa0677280:three_prime_UTR
GTCGAAGGTGGTGGTGGATA+AGG 0.424874 4_4:-30799741 None:intergenic
CATACGCAGGGTCCGGGAAG+GGG 0.429334 4_4:+30802076 Msa0677280:three_prime_UTR
TGATTGTTCCGGAGTTGCTT+CGG 0.434817 4_4:-30799167 None:intergenic
TGAGGATGAGAATGTGGATT+CGG 0.435504 4_4:-30799903 None:intergenic
TTCCCGGACCCTGCGTATGC+AGG 0.435681 4_4:-30802072 None:intergenic
TGGATGTTGTTGCTCATCTT+GGG 0.442275 4_4:+30799406 Msa0677280:CDS
TTCTTCTACTTCGCTGGACA+CGG 0.442290 4_4:-30799208 None:intergenic
CCGCAGAGTTTGCATGAAAC+CGG 0.443486 4_4:+30799600 Msa0677280:CDS
AACATTAAGATATACTAATC+AGG 0.443774 4_4:-30801776 None:intergenic
AGTGGAAGCTGAAGCAGATT+CGG 0.449529 4_4:+30799314 Msa0677280:CDS
AGAGAGTACGGAGAGGCTCC+GGG 0.454039 4_4:-30799104 None:intergenic
GAACCCGAGCGAGATGGATC+AGG 0.456693 4_4:+30799246 Msa0677280:CDS
TGATGTCCCATACCAATCAT+AGG 0.460751 4_4:-30799780 None:intergenic
ATGCAGGAGCTTCAGTGCAC+CGG 0.461180 4_4:-30802056 None:intergenic
AAGGTCACGGGTTCAAGTCC+TGG 0.462983 4_4:-30802157 None:intergenic
AAAACAAGAATTCTCAAGGT+TGG 0.463126 4_4:-30801952 None:intergenic
TCATGCAAACTCTGCGGCAC+AGG 0.465750 4_4:-30799594 None:intergenic
GATTTGATGAGTGATTGTTC+CGG 0.471479 4_4:-30799178 None:intergenic
ACAGCTACATAAAAGATTTG+TGG 0.472539 4_4:+30799386 Msa0677280:CDS
ACAAGCCTTATCCACAAGAA+AGG 0.474142 4_4:-30802341 None:intergenic
TGTTACAATGAGAGTGGAAA+GGG 0.475079 4_4:+30801880 Msa0677280:three_prime_UTR
CTCCTGCATACGCAGGGTCC+GGG 0.482619 4_4:+30802070 Msa0677280:three_prime_UTR
ATATGATGCATCATAGGGAT+TGG 0.484646 4_4:+30799877 Msa0677280:CDS
ATGAGAATGATTAGCAGAAC+CGG 0.486272 4_4:-30799619 None:intergenic
AGATTCAAATGTTTGATTGT+TGG 0.488040 4_4:+30801352 Msa0677280:intron
ATTTAATATGATGCATCATA+GGG 0.488329 4_4:+30799872 Msa0677280:CDS
ATGCAGTTGATGAATGTTGA+AGG 0.492393 4_4:+30799456 Msa0677280:CDS
TTCCGCTTTCAGCATCTCCC+CGG 0.493661 4_4:+30799086 Msa0677280:intron
ATCATAGTCGAAGGTGGTGG+TGG 0.494086 4_4:-30799747 None:intergenic
TAGAAATGTTACAATGAGAG+TGG 0.495630 4_4:+30801874 Msa0677280:three_prime_UTR
ACCACAGAGCAGGTTACAAA+TGG 0.503255 4_4:-30801744 None:intergenic
ATCCCTTGATCAAAAGAACT+AGG 0.505539 4_4:+30802004 Msa0677280:three_prime_UTR
ACGTGTAACGGAGTGGGAAA+AGG 0.509292 4_4:+30797032 Msa0677280:CDS
TGCATACGCAGGGTCCGGGA+AGG 0.509378 4_4:+30802074 Msa0677280:three_prime_UTR
CTTGAACAAGATCTATAAAA+GGG 0.510111 4_4:+30802029 Msa0677280:three_prime_UTR
TTGGCTGGCACCTTTCACGT+GGG 0.513085 4_4:-30797062 None:intergenic
TCTCTTCTCCGAAGCAACTC+CGG 0.518098 4_4:+30799159 Msa0677280:CDS
TAGGCGGTGATTGTGAGTTA+AGG 0.520176 4_4:+30801534 Msa0677280:three_prime_UTR
GCTGCGTACAATACACCAAA+TGG 0.522967 4_4:-30802104 None:intergenic
TTTGGCTGGCACCTTTCACG+TGG 0.525031 4_4:-30797063 None:intergenic
GACGAAGAACCCGAGCGAGA+TGG 0.525147 4_4:+30799240 Msa0677280:CDS
ACCGCCTACATTTACGTGAC+AGG 0.525269 4_4:-30801519 None:intergenic
AGATTCTGTTACAGAAGAAG+TGG 0.528651 4_4:+30799296 Msa0677280:intron
CGAACCTGATCCATCTCGCT+CGG 0.534136 4_4:-30799250 None:intergenic
GTTGTTGTCATGTGACTGTA+AGG 0.540289 4_4:-30802176 None:intergenic
TCAAATGCTAATCATTCGAA+TGG 0.540654 4_4:+30799648 Msa0677280:CDS
AAAAGATGATCAGAAGAAGA+AGG 0.541009 4_4:-30799561 None:intergenic
GAACCTGATCCATCTCGCTC+GGG 0.541572 4_4:-30799249 None:intergenic
ATGTCAATGCCGCCTATGAT+TGG 0.542928 4_4:+30799768 Msa0677280:CDS
GACATATGAGGATGAGAATG+TGG 0.546426 4_4:-30799909 None:intergenic
AACAAGAATTCTCAAGGTTG+GGG 0.547453 4_4:-30801950 None:intergenic
ACTTTATGAAGCCTTTCTTG+TGG 0.547792 4_4:+30802330 Msa0677280:three_prime_UTR
ACGAAGAACGTGTAACGGAG+TGG 0.550873 4_4:+30797025 Msa0677280:CDS
TGCATAGATCTTGTTCAAGA+GGG 0.554891 4_4:-30802222 None:intergenic
TGCAGGAGCTTCAGTGCACC+GGG 0.556293 4_4:-30802055 None:intergenic
ATCATCCACATGGGCATATG+GGG 0.557841 4_4:+30799799 Msa0677280:CDS
CTAGAACCACCCGAAGGAGG+AGG 0.558990 4_4:-30799831 None:intergenic
CTATCATTGGAAGACATATG+AGG 0.559295 4_4:-30799921 None:intergenic
ATGCCGCCTATGATTGGTAT+GGG 0.560585 4_4:+30799774 Msa0677280:CDS
AATTCCTGTCACGTAAATGT+AGG 0.561916 4_4:+30801515 Msa0677280:three_prime_UTR
ATAAAACCTAGAATAATGAA+TGG 0.566088 4_4:-30801983 None:intergenic
CTGCATAGATCTTGTTCAAG+AGG 0.566537 4_4:-30802223 None:intergenic
AGGTGTTGGTCCCACGTGAA+AGG 0.567229 4_4:+30797052 Msa0677280:CDS
GTCATGTGACTGTAAGGTCA+CGG 0.567657 4_4:-30802170 None:intergenic
GGTTGACGTCGAAGAGAGTA+CGG 0.568518 4_4:-30799116 None:intergenic
AATTTGTTTGTGCAATGTAG+AGG 0.569279 4_4:-30801393 None:intergenic
ATGCTAATCATTCGAATGGA+GGG 0.576619 4_4:+30799652 Msa0677280:CDS
AATCATTCGAATGGAGGGCA+TGG 0.576636 4_4:+30799657 Msa0677280:CDS
AATGCCGCCTATGATTGGTA+TGG 0.579585 4_4:+30799773 Msa0677280:CDS
CTAGAATAATGAATGGTCAC+AGG 0.580291 4_4:-30801976 None:intergenic
TCTTCTACTTCGCTGGACAC+GGG 0.581779 4_4:-30799207 None:intergenic
CAACTTTACCAGTTGCGCCA+AGG 0.585916 4_4:+30802195 Msa0677280:three_prime_UTR
TCATGTGACTGTAAGGTCAC+GGG 0.586314 4_4:-30802169 None:intergenic
ACTGAAGCTCCTGCATACGC+AGG 0.586588 4_4:+30802063 Msa0677280:three_prime_UTR
CAAATTGTAATTTAGCTCCG+TGG 0.586773 4_4:-30801438 None:intergenic
GACATCATAGTCGAAGGTGG+TGG 0.587152 4_4:-30799750 None:intergenic
AACAAACTGAATGGGTGAAG+AGG 0.590082 4_4:+30796993 None:intergenic
AACGGAGTGGGAAAAGGTGT+TGG 0.595148 4_4:+30797038 Msa0677280:CDS
GGTGGTGGTGGATAAGGCAT+AGG 0.595338 4_4:-30799735 None:intergenic
GAACATTGATACCACAGAGC+AGG 0.597922 4_4:-30801754 None:intergenic
GCGTACAATACACCAAATGG+TGG 0.601920 4_4:-30802101 None:intergenic
GGCATTGACATCATAGTCGA+AGG 0.602892 4_4:-30799756 None:intergenic
AGGTAAAACAAGAATTCTCA+AGG 0.603233 4_4:-30801956 None:intergenic
CTGAAGCTCCTGCATACGCA+GGG 0.605623 4_4:+30802064 Msa0677280:three_prime_UTR
ATTGCACAAACAAATTCTTG+AGG 0.608904 4_4:+30801400 Msa0677280:three_prime_UTR
AATGCTAATCATTCGAATGG+AGG 0.610766 4_4:+30799651 Msa0677280:CDS
ATGTTACAATGAGAGTGGAA+AGG 0.612203 4_4:+30801879 Msa0677280:three_prime_UTR
AAGAGAGAGTGTGTTGCGAG+AGG 0.612371 4_4:-30799142 None:intergenic
AGCAATGGTTCTGAAGAAGA+AGG 0.615488 4_4:-30801684 None:intergenic
GAGCTAGAACCACCCGAAGG+AGG 0.617421 4_4:-30799834 None:intergenic
AGATCTATAAAAGGGCAACC+CGG 0.618341 4_4:+30802037 Msa0677280:three_prime_UTR
GGAGGGCATGGAAATGGACA+TGG 0.620162 4_4:+30799669 Msa0677280:CDS
CTCATCCCCATATGCCCATG+TGG 0.624417 4_4:-30799804 None:intergenic
GAGAGTACGGAGAGGCTCCG+GGG 0.626074 4_4:-30799103 None:intergenic
AGTTTGCCTCCTCCTTCGGG+TGG 0.628086 4_4:+30799825 Msa0677280:CDS
CGAAGAACGTGTAACGGAGT+GGG 0.629837 4_4:+30797026 Msa0677280:CDS
TTGTTCAAGAGGGGTAACCT+TGG 0.631918 4_4:-30802212 None:intergenic
GTTACAATGAGAGTGGAAAG+GGG 0.635051 4_4:+30801881 Msa0677280:three_prime_UTR
TGTGGGGTCCACACCAACCT+CGG 0.635154 4_4:-30799366 None:intergenic
AACAGACGAAGAACGTGTAA+CGG 0.639303 4_4:+30797020 Msa0677280:CDS
GGATGAGAATGTGGATTCGG+AGG 0.643753 4_4:-30799900 None:intergenic
GGTATGGGACATCATCCACA+TGG 0.649470 4_4:+30799789 Msa0677280:CDS
GGAAGTATATGAAGATTCCA+CGG 0.650423 4_4:+30801421 Msa0677280:three_prime_UTR
TCCTGTCACGTAAATGTAGG+CGG 0.654015 4_4:+30801518 Msa0677280:three_prime_UTR
TCAGGAGTACACGCACTACA+CGG 0.666051 4_4:-30801652 None:intergenic
GCATAGATCTTGTTCAAGAG+GGG 0.667682 4_4:-30802221 None:intergenic
CGTACAATACACCAAATGGT+GGG 0.668975 4_4:-30802100 None:intergenic
ATTGACATCATAGTCGAAGG+TGG 0.681193 4_4:-30799753 None:intergenic
GCCATTTGTAACCTGCTCTG+TGG 0.690054 4_4:+30801743 Msa0677280:three_prime_UTR
AGAGTGTGTTGCGAGAGGCG+CGG 0.693296 4_4:-30799137 None:intergenic
TAAGAGCTAGAACCACCCGA+AGG 0.715458 4_4:-30799837 None:intergenic
AGATTCGGCTGTTAGAACAA+CGG 0.719098 4_4:+30799329 Msa0677280:CDS
TCATCTTGGGATAAAGAACG+CGG 0.719383 4_4:+30799419 Msa0677280:CDS
GTATGGGACATCATCCACAT+GGG 0.727717 4_4:+30799790 Msa0677280:CDS
CCGGTTTCATGCAAACTCTG+CGG 0.740073 4_4:-30799600 None:intergenic
TGTCCCATACCAATCATAGG+CGG 0.741457 4_4:-30799777 None:intergenic
ACGTCGAAGAGAGTACGGAG+AGG 0.748301 4_4:-30799111 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGATAGTAATAAATAAAA+GGG + chr4_4:30799936-30799955 Msa0677280:intron 10.0%
!!! TATTTGTACTTTTTTTTTTA+AGG + chr4_4:30802292-30802311 Msa0677280:three_prime_UTR 10.0%
!! TAAAAAAATAGCATTAGAAT+AGG + chr4_4:30797368-30797387 Msa0677280:intron 15.0%
!! TAAAAAAATAGCATTAGAAT+AGG + chr4_4:30797368-30797387 Msa0677280:intron 15.0%
!!! CTTTTATTTATTACTATCAT+TGG - chr4_4:30799937-30799956 None:intergenic 15.0%
!! CAATGATAGTAATAAATAAA+AGG + chr4_4:30799935-30799954 Msa0677280:intron 15.0%
!! ATGATAGTAATAAATAAAAG+GGG + chr4_4:30799937-30799956 Msa0677280:intron 15.0%
!!! TTTACTTAAGATTGAATTTT+TGG + chr4_4:30800317-30800336 Msa0677280:intron 15.0%
!!! TTACTTAAGATTGAATTTTT+GGG + chr4_4:30800318-30800337 Msa0677280:intron 15.0%
!!! TTTGTTATAGAAATAACTTA+CGG - chr4_4:30800570-30800589 None:intergenic 15.0%
!!! AAGTTAAATTATTTTCATGT+AGG + chr4_4:30800600-30800619 Msa0677280:intron 15.0%
!! AAGTTTATTAAATTACTATG+TGG + chr4_4:30800868-30800887 Msa0677280:intron 15.0%
!! AGTTTATTAAATTACTATGT+GGG + chr4_4:30800869-30800888 Msa0677280:intron 15.0%
!! CAAAATTTAATGTAAATGAT+TGG + chr4_4:30800974-30800993 Msa0677280:intron 15.0%
!!! TTTGTTTATAGTGATTTTTT+AGG + chr4_4:30801094-30801113 Msa0677280:intron 15.0%
!!! TATTGATTGTATATTTAATG+AGG + chr4_4:30801287-30801306 Msa0677280:intron 15.0%
!! CAAATAAAATAATACTAATC+AGG - chr4_4:30801802-30801821 None:intergenic 15.0%
!!! TCTTATTTATAGAAGGAAAT+TGG - chr4_4:30797185-30797204 None:intergenic 20.0%
!!! TCTTATTTATAGAAGGAAAT+TGG - chr4_4:30797185-30797204 None:intergenic 20.0%
!! ATTTAATATGATGCATCATA+GGG + chr4_4:30799872-30799891 Msa0677280:CDS 20.0%
!!! CTTATTCTTTTGAACATAAT+TGG + chr4_4:30800037-30800056 Msa0677280:intron 20.0%
!!! TTATTTTCTTAAGCTCTTAT+AGG + chr4_4:30800165-30800184 Msa0677280:intron 20.0%
!!! TTTGACTTTATTTTATCTGT+TGG + chr4_4:30800203-30800222 Msa0677280:intron 20.0%
!! ATAACCAGAAATTAAGTAAT+AGG - chr4_4:30800394-30800413 None:intergenic 20.0%
!!! TTTTTTAGTACATAACATTG+AGG + chr4_4:30800496-30800515 Msa0677280:intron 20.0%
!! TTGTTATAGAAATAACTTAC+GGG - chr4_4:30800569-30800588 None:intergenic 20.0%
!! AATTTAATGTAAATGATTGG+TGG + chr4_4:30800977-30800996 Msa0677280:intron 20.0%
!! ATTTAATGTAAATGATTGGT+GGG + chr4_4:30800978-30800997 Msa0677280:intron 20.0%
!!! TTTATAGTGATTTTTTAGGA+TGG + chr4_4:30801098-30801117 Msa0677280:intron 20.0%
!! TTGGAAAATACATATTTCAT+TGG + chr4_4:30801136-30801155 Msa0677280:intron 20.0%
!! AAACATTTGAATCTACAAAA+AGG - chr4_4:30801346-30801365 None:intergenic 20.0%
!! AACATTAAGATATACTAATC+AGG - chr4_4:30801779-30801798 None:intergenic 20.0%
!!! TAAGTTCCATTTTCTTATAT+TGG + chr4_4:30801827-30801846 Msa0677280:three_prime_UTR 20.0%
!!! AAGTTCCATTTTCTTATATT+GGG + chr4_4:30801828-30801847 Msa0677280:three_prime_UTR 20.0%
!!! GATTTATATTTTGTAAGTAG+AGG + chr4_4:30801903-30801922 Msa0677280:three_prime_UTR 20.0%
!! ATAAAACCTAGAATAATGAA+TGG - chr4_4:30801986-30802005 None:intergenic 20.0%
!!! TTGCTAATTTGTTTTTTTCT+TGG + chr4_4:30802256-30802275 Msa0677280:three_prime_UTR 20.0%
!!! TAATTTGTTTTTTTCTTGGT+GGG + chr4_4:30802260-30802279 Msa0677280:three_prime_UTR 20.0%
!!! TTTTATACTGATTTGCTAAT+TGG + chr4_4:30802379-30802398 Msa0677280:three_prime_UTR 20.0%
!!! AATTATTTTTCCTTTTTGGC+TGG - chr4_4:30797080-30797099 None:intergenic 25.0%
!!! CTGCAATTATTTTTCCTTTT+TGG - chr4_4:30797084-30797103 None:intergenic 25.0%
! AGTTGAGAAAATTACAACTT+TGG - chr4_4:30797111-30797130 None:intergenic 25.0%
! ATTTAAAGAGAAATTGTCCA+GGG + chr4_4:30797876-30797895 Msa0677280:intron 25.0%
! AAAGATTAAGTATGTCCTTA+TGG + chr4_4:30797979-30797998 Msa0677280:intron 25.0%
!!! AATTATTTTTCCTTTTTGGC+TGG - chr4_4:30797080-30797099 None:intergenic 25.0%
!!! CTGCAATTATTTTTCCTTTT+TGG - chr4_4:30797084-30797103 None:intergenic 25.0%
! AGTTGAGAAAATTACAACTT+TGG - chr4_4:30797111-30797130 None:intergenic 25.0%
! CTATGATGCATCATATTAAA+TGG - chr4_4:30799873-30799892 None:intergenic 25.0%
! CATTTAATATGATGCATCAT+AGG + chr4_4:30799871-30799890 Msa0677280:CDS 25.0%
! CATACCTATTACTTAATTTC+TGG + chr4_4:30800387-30800406 Msa0677280:intron 25.0%
! AAAAACAGAACAAAGAAACA+AGG - chr4_4:30800481-30800500 None:intergenic 25.0%
! ATAGGTCATAAATAATCATC+GGG - chr4_4:30800524-30800543 None:intergenic 25.0%
! CATAGGTCATAAATAATCAT+CGG - chr4_4:30800525-30800544 None:intergenic 25.0%
! TGTTATAGAAATAACTTACG+GGG - chr4_4:30800568-30800587 None:intergenic 25.0%
!!! AGCTATTTTGTATAGTTTGT+AGG + chr4_4:30800641-30800660 Msa0677280:intron 25.0%
!! TACAAACTGAAAACATCTTT+TGG + chr4_4:30800664-30800683 Msa0677280:intron 25.0%
!! ACAAACTGAAAACATCTTTT+GGG + chr4_4:30800665-30800684 Msa0677280:intron 25.0%
!!! TTTTTTAGTGCATTACATTG+AGG + chr4_4:30800928-30800947 Msa0677280:intron 25.0%
! AAATACAACTTTACCATATG+CGG - chr4_4:30801045-30801064 None:intergenic 25.0%
! ATGTGATACAATATCAGATT+TGG + chr4_4:30801069-30801088 Msa0677280:intron 25.0%
!!! GATACTTTTGTTTTGTTTGT+TGG + chr4_4:30801176-30801195 Msa0677280:intron 25.0%
! TAAGAATGCATTTCTTCATT+TGG + chr4_4:30801209-30801228 Msa0677280:intron 25.0%
! TATATTATATTACCATTGCC+CGG + chr4_4:30801235-30801254 Msa0677280:intron 25.0%
! AGATTCAAATGTTTGATTGT+TGG + chr4_4:30801352-30801371 Msa0677280:intron 25.0%
!! TCTTTTATTCAATGTAGCAA+TGG - chr4_4:30801702-30801721 None:intergenic 25.0%
! CTTGAACAAGATCTATAAAA+GGG + chr4_4:30802029-30802048 Msa0677280:three_prime_UTR 25.0%
!!! CTAATTTGTTTTTTTCTTGG+TGG + chr4_4:30802259-30802278 Msa0677280:three_prime_UTR 25.0%
!! TAATTTTCTCAACTAGCTTG+CGG + chr4_4:30797117-30797136 Msa0677280:intron 30.0%
GTATCATCTCTATAACTCTT+AGG + chr4_4:30797340-30797359 Msa0677280:intron 30.0%
AAATAGCATTAGAATAGGAG+TGG + chr4_4:30797373-30797392 Msa0677280:intron 30.0%
AATAGCATTAGAATAGGAGT+GGG + chr4_4:30797374-30797393 Msa0677280:intron 30.0%
AAACACTGTATTGTATCTCT+TGG + chr4_4:30797406-30797425 Msa0677280:intron 30.0%
AACACTGTATTGTATCTCTT+GGG + chr4_4:30797407-30797426 Msa0677280:intron 30.0%
TTCACATAGTGATAATTCTC+TGG + chr4_4:30797463-30797482 Msa0677280:intron 30.0%
CTAAGAATTGTGATATCTCA+CGG - chr4_4:30797628-30797647 None:intergenic 30.0%
! AAAGAAGTGTGATATTGTGA+AGG + chr4_4:30797692-30797711 Msa0677280:intron 30.0%
! TTTGATGACAGAATCAACTT+TGG + chr4_4:30797785-30797804 Msa0677280:intron 30.0%
CAATCAAGATTACACAAGTA+TGG + chr4_4:30797842-30797861 Msa0677280:intron 30.0%
CATTTAAAGAGAAATTGTCC+AGG + chr4_4:30797875-30797894 Msa0677280:intron 30.0%
TTTAAAGAGAAATTGTCCAG+GGG + chr4_4:30797877-30797896 Msa0677280:intron 30.0%
!! GCAATAATTGTCCTTTTTCA+TGG - chr4_4:30798018-30798037 None:intergenic 30.0%
AAAAGGACAATTATTGCTAG+CGG + chr4_4:30798021-30798040 Msa0677280:intron 30.0%
CAAGTGAAGTATACTCTTTA+TGG + chr4_4:30798200-30798219 Msa0677280:intron 30.0%
TGAAGTATACTCTTTATGGT+GGG + chr4_4:30798204-30798223 Msa0677280:intron 30.0%
TTGTCGGTATAGATAATAGA+AGG + chr4_4:30798233-30798252 Msa0677280:intron 30.0%
TGTCGGTATAGATAATAGAA+GGG + chr4_4:30798234-30798253 Msa0677280:intron 30.0%
GGAAGAACAACAATTTATGT+TGG + chr4_4:30798270-30798289 Msa0677280:intron 30.0%
!! TAATTTTCTCAACTAGCTTG+CGG + chr4_4:30797117-30797136 Msa0677280:intron 30.0%
GTATCATCTCTATAACTCTT+AGG + chr4_4:30797340-30797359 Msa0677280:intron 30.0%
AAATAGCATTAGAATAGGAG+TGG + chr4_4:30797373-30797392 Msa0677280:intron 30.0%
AATAGCATTAGAATAGGAGT+GGG + chr4_4:30797374-30797393 Msa0677280:intron 30.0%
AAACACTGTATTGTATCTCT+TGG + chr4_4:30797406-30797425 Msa0677280:intron 30.0%
AACACTGTATTGTATCTCTT+GGG + chr4_4:30797407-30797426 Msa0677280:intron 30.0%
TTCACATAGTGATAATTCTC+TGG + chr4_4:30797463-30797482 Msa0677280:intron 30.0%
GTTCGAATTCAAGAAAACAT+AGG + chr4_4:30799268-30799287 Msa0677280:intron 30.0%
! AAATCTTTTATGTAGCTGTG+GGG - chr4_4:30799385-30799404 None:intergenic 30.0%
! CAAATCTTTTATGTAGCTGT+GGG - chr4_4:30799386-30799405 None:intergenic 30.0%
! ACAAATCTTTTATGTAGCTG+TGG - chr4_4:30799387-30799406 None:intergenic 30.0%
ACAGCTACATAAAAGATTTG+TGG + chr4_4:30799386-30799405 Msa0677280:CDS 30.0%
! ATCAACTGCATAATCGTTTT+CGG - chr4_4:30799447-30799466 None:intergenic 30.0%
! CTTTATTTGAAGAGAATGCA+AGG + chr4_4:30799522-30799541 Msa0677280:intron 30.0%
AAAAGATGATCAGAAGAAGA+AGG - chr4_4:30799564-30799583 None:intergenic 30.0%
TCAAATGCTAATCATTCGAA+TGG + chr4_4:30799648-30799667 Msa0677280:CDS 30.0%
AAGAAACACCAACTATTCTT+TGG - chr4_4:30800020-30800039 None:intergenic 30.0%
!! GGTTTTATGTAAGTTTGCAA+TGG + chr4_4:30800339-30800358 Msa0677280:intron 30.0%
TATGTAAGTTTGCAATGGTT+TGG + chr4_4:30800344-30800363 Msa0677280:intron 30.0%
ATGTAAGTTTGCAATGGTTT+GGG + chr4_4:30800345-30800364 Msa0677280:intron 30.0%
TGAAAACTTGAAACAGAGTT+AGG + chr4_4:30800446-30800465 Msa0677280:intron 30.0%
! GAGCTAAATTTTCATCTCAT+AGG - chr4_4:30800542-30800561 None:intergenic 30.0%
TCTACAATCAAGTAATAGGT+GGG - chr4_4:30800794-30800813 None:intergenic 30.0%
CTAGTCTACAATCAAGTAAT+AGG - chr4_4:30800798-30800817 None:intergenic 30.0%
TTAAATTACTATGTGGGTAG+TGG + chr4_4:30800875-30800894 Msa0677280:intron 30.0%
TAAATTACTATGTGGGTAGT+GGG + chr4_4:30800876-30800895 Msa0677280:intron 30.0%
! AATTTGTTTGTGCAATGTAG+AGG - chr4_4:30801396-30801415 None:intergenic 30.0%
ATTGCACAAACAAATTCTTG+AGG + chr4_4:30801400-30801419 Msa0677280:three_prime_UTR 30.0%
TCACAGATTTACAAACTTCT+TGG + chr4_4:30801481-30801500 Msa0677280:three_prime_UTR 30.0%
TTAGAATCAGCTATCTGTTT+AGG - chr4_4:30801578-30801597 None:intergenic 30.0%
ACACACCCAATATAAGAAAA+TGG - chr4_4:30801836-30801855 None:intergenic 30.0%
! TTTTCTTATATTGGGTGTGT+AGG + chr4_4:30801836-30801855 Msa0677280:three_prime_UTR 30.0%
TAGAAATGTTACAATGAGAG+TGG + chr4_4:30801874-30801893 Msa0677280:three_prime_UTR 30.0%
AAACAAGAATTCTCAAGGTT+GGG - chr4_4:30801954-30801973 None:intergenic 30.0%
AAAACAAGAATTCTCAAGGT+TGG - chr4_4:30801955-30801974 None:intergenic 30.0%
AGGTAAAACAAGAATTCTCA+AGG - chr4_4:30801959-30801978 None:intergenic 30.0%
GCTTGAACAAGATCTATAAA+AGG + chr4_4:30802028-30802047 Msa0677280:three_prime_UTR 30.0%
!! CCTGCTGTCTTATTTATAGA+AGG - chr4_4:30797192-30797211 None:intergenic 35.0%
CCTTCTATAAATAAGACAGC+AGG + chr4_4:30797189-30797208 Msa0677280:intron 35.0%
AGTGATAATTCTCTGGTTGT+CGG + chr4_4:30797470-30797489 Msa0677280:intron 35.0%
ACAATTCTTAGTATGCTCTG+TGG + chr4_4:30797637-30797656 Msa0677280:intron 35.0%
!!! CACACTTCTTTTTTCTGATG+TGG - chr4_4:30797683-30797702 None:intergenic 35.0%
TTACACAAGTATGGAATGTC+TGG + chr4_4:30797851-30797870 Msa0677280:intron 35.0%
TACACAAGTATGGAATGTCT+GGG + chr4_4:30797852-30797871 Msa0677280:intron 35.0%
TTAAAGAGAAATTGTCCAGG+GGG + chr4_4:30797878-30797897 Msa0677280:intron 35.0%
! AGTTTCTGAAAAAGACTCTG+AGG + chr4_4:30797904-30797923 Msa0677280:intron 35.0%
TAGTAATGTCTCCTTTGTTG+CGG + chr4_4:30797934-30797953 Msa0677280:intron 35.0%
TTTCCGCTATACCATGAAAA+AGG + chr4_4:30798004-30798023 Msa0677280:intron 35.0%
!! TGTCCTTTTTCATGGTATAG+CGG - chr4_4:30798010-30798029 None:intergenic 35.0%
GAAACCTTGCTGAAAGATTA+TGG - chr4_4:30798148-30798167 None:intergenic 35.0%
TTTCGACGTGAAGAAATTCT+TGG + chr4_4:30798164-30798183 Msa0677280:intron 35.0%
ACGTGAAGAAATTCTTGGAA+TGG + chr4_4:30798169-30798188 Msa0677280:intron 35.0%
GTGAAGTATACTCTTTATGG+TGG + chr4_4:30798203-30798222 Msa0677280:intron 35.0%
GAAGTATACTCTTTATGGTG+GGG + chr4_4:30798205-30798224 Msa0677280:intron 35.0%
GTCGGTATAGATAATAGAAG+GGG + chr4_4:30798235-30798254 Msa0677280:intron 35.0%
TCGGTATAGATAATAGAAGG+GGG + chr4_4:30798236-30798255 Msa0677280:intron 35.0%
GCAGTACAAGTATAATTGTG+TGG + chr4_4:30798371-30798390 Msa0677280:intron 35.0%
!! CCTGCTGTCTTATTTATAGA+AGG - chr4_4:30797192-30797211 None:intergenic 35.0%
CCTTCTATAAATAAGACAGC+AGG + chr4_4:30797189-30797208 Msa0677280:intron 35.0%
AGTGATAATTCTCTGGTTGT+CGG + chr4_4:30797470-30797489 Msa0677280:intron 35.0%
! CCTTTTGTTGGGAAATAACA+GGG - chr4_4:30799005-30799024 None:intergenic 35.0%
!! CCTGTTATTTCCCAACAAAA+GGG + chr4_4:30799003-30799022 Msa0677280:intron 35.0%
GATTTGATGAGTGATTGTTC+CGG - chr4_4:30799181-30799200 None:intergenic 35.0%
AGATTCTGTTACAGAAGAAG+TGG + chr4_4:30799296-30799315 Msa0677280:intron 35.0%
!! ATGCAGTTGATGAATGTTGA+AGG + chr4_4:30799456-30799475 Msa0677280:CDS 35.0%
ATGAGAATGATTAGCAGAAC+CGG - chr4_4:30799622-30799641 None:intergenic 35.0%
AATGCTAATCATTCGAATGG+AGG + chr4_4:30799651-30799670 Msa0677280:CDS 35.0%
ATGCTAATCATTCGAATGGA+GGG + chr4_4:30799652-30799671 Msa0677280:CDS 35.0%
ATATGATGCATCATAGGGAT+TGG + chr4_4:30799877-30799896 Msa0677280:CDS 35.0%
CTATCATTGGAAGACATATG+AGG - chr4_4:30799924-30799943 None:intergenic 35.0%
TTGTGCTTCCAAAGAATAGT+TGG + chr4_4:30800009-30800028 Msa0677280:intron 35.0%
ATATCTCAAGCGCTTATGTA+TGG + chr4_4:30800254-30800273 Msa0677280:intron 35.0%
TTATGTATGGTATAAGCGCT+TGG + chr4_4:30800267-30800286 Msa0677280:intron 35.0%
AAGTACTTGTGAGACAGTTT+GGG - chr4_4:30800719-30800738 None:intergenic 35.0%
GTCTACAATCAAGTAATAGG+TGG - chr4_4:30800795-30800814 None:intergenic 35.0%
! GGAAGTATATGAAGATTCCA+CGG + chr4_4:30801421-30801440 Msa0677280:three_prime_UTR 35.0%
! CAAATTGTAATTTAGCTCCG+TGG - chr4_4:30801441-30801460 None:intergenic 35.0%
AATTCCTGTCACGTAAATGT+AGG + chr4_4:30801515-30801534 Msa0677280:three_prime_UTR 35.0%
AGAAGAAGGTTAACACTTTC+AGG - chr4_4:30801673-30801692 None:intergenic 35.0%
ATGTTACAATGAGAGTGGAA+AGG + chr4_4:30801879-30801898 Msa0677280:three_prime_UTR 35.0%
TGTTACAATGAGAGTGGAAA+GGG + chr4_4:30801880-30801899 Msa0677280:three_prime_UTR 35.0%
AACAAGAATTCTCAAGGTTG+GGG - chr4_4:30801953-30801972 None:intergenic 35.0%
CTAGAATAATGAATGGTCAC+AGG - chr4_4:30801979-30801998 None:intergenic 35.0%
CTGTGACCATTCATTATTCT+AGG + chr4_4:30801977-30801996 Msa0677280:three_prime_UTR 35.0%
ATCCCTTGATCAAAAGAACT+AGG + chr4_4:30802004-30802023 Msa0677280:three_prime_UTR 35.0%
!! CTCCTAGTTCTTTTGATCAA+GGG - chr4_4:30802009-30802028 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr4_4:30802129-30802148 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr4_4:30802128-30802147 Msa0677280:three_prime_UTR 35.0%
TGCATAGATCTTGTTCAAGA+GGG - chr4_4:30802225-30802244 None:intergenic 35.0%
ACTTTATGAAGCCTTTCTTG+TGG + chr4_4:30802330-30802349 Msa0677280:three_prime_UTR 35.0%
AACAGACGAAGAACGTGTAA+CGG + chr4_4:30797020-30797039 Msa0677280:CDS 40.0%
TTGAGTAAATCCAGAGAGTG+TGG + chr4_4:30797299-30797318 Msa0677280:intron 40.0%
! TGAGTAAATCCAGAGAGTGT+GGG + chr4_4:30797300-30797319 Msa0677280:intron 40.0%
! TGTATTTTTCCCACACTCTC+TGG - chr4_4:30797312-30797331 None:intergenic 40.0%
AGAGTGTGGGAAAAATACAC+CGG + chr4_4:30797313-30797332 Msa0677280:intron 40.0%
TTATAGAGATGATACCCACC+CGG - chr4_4:30797335-30797354 None:intergenic 40.0%
TAACGTGGAAACTCCAAAAC+CGG - chr4_4:30797522-30797541 None:intergenic 40.0%
CACAACACGAGAATATAACG+TGG - chr4_4:30797537-30797556 None:intergenic 40.0%
ACCACTGTTGGGAAATAACA+GGG - chr4_4:30797590-30797609 None:intergenic 40.0%
TACCACTGTTGGGAAATAAC+AGG - chr4_4:30797591-30797610 None:intergenic 40.0%
!! TATTGTGAAGGTGCTGAAGA+AGG + chr4_4:30797704-30797723 Msa0677280:intron 40.0%
!! ATTGTGAAGGTGCTGAAGAA+GGG + chr4_4:30797705-30797724 Msa0677280:intron 40.0%
!! ACAGAATCAACTTTGGCTTG+TGG + chr4_4:30797792-30797811 Msa0677280:intron 40.0%
CTTGTGGAAACTACAAGTCA+AGG + chr4_4:30797808-30797827 Msa0677280:intron 40.0%
AACTACAAGTCAAGGATGTG+CGG + chr4_4:30797816-30797835 Msa0677280:intron 40.0%
AGTAATGTCTCCTTTGTTGC+GGG + chr4_4:30797935-30797954 Msa0677280:intron 40.0%
ATTATCATCTCCCGCAACAA+AGG - chr4_4:30797948-30797967 None:intergenic 40.0%
! GGTATAGCGGAAATACCATA+AGG - chr4_4:30797997-30798016 None:intergenic 40.0%
TGTGTGATGAGATATGTCGA+TGG + chr4_4:30798086-30798105 Msa0677280:intron 40.0%
TGCACCATAATCTTTCAGCA+AGG + chr4_4:30798141-30798160 Msa0677280:intron 40.0%
! TTATGGTGGGGTATGATTGT+CGG + chr4_4:30798217-30798236 Msa0677280:intron 40.0%
ATGAAAGAGCTTCTGCTTGA+GGG + chr4_4:30798394-30798413 Msa0677280:intron 40.0%
TTGAGTAAATCCAGAGAGTG+TGG + chr4_4:30797299-30797318 Msa0677280:intron 40.0%
! TGAGTAAATCCAGAGAGTGT+GGG + chr4_4:30797300-30797319 Msa0677280:intron 40.0%
! TGTATTTTTCCCACACTCTC+TGG - chr4_4:30797312-30797331 None:intergenic 40.0%
AGAGTGTGGGAAAAATACAC+CGG + chr4_4:30797313-30797332 Msa0677280:intron 40.0%
TTATAGAGATGATACCCACC+CGG - chr4_4:30797335-30797354 None:intergenic 40.0%
TAACGTGGAAACTCCAAAAC+CGG - chr4_4:30797522-30797541 None:intergenic 40.0%
CACAACACGAGAATATAACG+TGG - chr4_4:30797537-30797556 None:intergenic 40.0%
!! CCCTGTTATTTCCCAACAAA+AGG + chr4_4:30799002-30799021 Msa0677280:intron 40.0%
! CCCTTTTGTTGGGAAATAAC+AGG - chr4_4:30799006-30799025 None:intergenic 40.0%
TTCAACTTCTTCTACTTCGC+TGG - chr4_4:30799217-30799236 None:intergenic 40.0%
AGATTCGGCTGTTAGAACAA+CGG + chr4_4:30799329-30799348 Msa0677280:CDS 40.0%
GAACAACGGAGACGATAAAA+AGG + chr4_4:30799343-30799362 Msa0677280:CDS 40.0%
TGGATGTTGTTGCTCATCTT+GGG + chr4_4:30799406-30799425 Msa0677280:CDS 40.0%
TCATCTTGGGATAAAGAACG+CGG + chr4_4:30799419-30799438 Msa0677280:CDS 40.0%
ATTGACATCATAGTCGAAGG+TGG - chr4_4:30799756-30799775 None:intergenic 40.0%
TGATGTCCCATACCAATCAT+AGG - chr4_4:30799783-30799802 None:intergenic 40.0%
TGAGGATGAGAATGTGGATT+CGG - chr4_4:30799906-30799925 None:intergenic 40.0%
GACATATGAGGATGAGAATG+TGG - chr4_4:30799912-30799931 None:intergenic 40.0%
! GGAAGCACAATGAAAAGTGA+TGG - chr4_4:30799999-30800018 None:intergenic 40.0%
CAAGTACTTGTGAGACAGTT+TGG - chr4_4:30800720-30800739 None:intergenic 40.0%
GTATGAGAGTGAGTTCTGTT+AGG - chr4_4:30800772-30800791 None:intergenic 40.0%
ACAGCACAATGAAATGGGTA+AGG - chr4_4:30801019-30801038 None:intergenic 40.0%
GGATGACAGCACAATGAAAT+GGG - chr4_4:30801024-30801043 None:intergenic 40.0%
! ATGGTCTTTGCTGTCTGATT+TGG + chr4_4:30801117-30801136 Msa0677280:intron 40.0%
!! ACTGAGAGTGTTGATCAATC+CGG - chr4_4:30801257-30801276 None:intergenic 40.0%
!! AGCAATGGTTCTGAAGAAGA+AGG - chr4_4:30801687-30801706 None:intergenic 40.0%
TATATTGGGTGTGTAGGACT+AGG + chr4_4:30801842-30801861 Msa0677280:three_prime_UTR 40.0%
GTTACAATGAGAGTGGAAAG+GGG + chr4_4:30801881-30801900 Msa0677280:three_prime_UTR 40.0%
!! GCTCCTAGTTCTTTTGATCA+AGG - chr4_4:30802010-30802029 None:intergenic 40.0%
AGATCTATAAAAGGGCAACC+CGG + chr4_4:30802037-30802056 Msa0677280:three_prime_UTR 40.0%
CGTACAATACACCAAATGGT+GGG - chr4_4:30802103-30802122 None:intergenic 40.0%
CAGCCTCTTGTGTAAAAACA+GGG - chr4_4:30802134-30802153 None:intergenic 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG - chr4_4:30802135-30802154 None:intergenic 40.0%
GTTGTTGTCATGTGACTGTA+AGG - chr4_4:30802179-30802198 None:intergenic 40.0%
GCATAGATCTTGTTCAAGAG+GGG - chr4_4:30802224-30802243 None:intergenic 40.0%
CTGCATAGATCTTGTTCAAG+AGG - chr4_4:30802226-30802245 None:intergenic 40.0%
TGAAGCCTTTCTTGTGGATA+AGG + chr4_4:30802336-30802355 Msa0677280:three_prime_UTR 40.0%
! ACAAGCCTTATCCACAAGAA+AGG - chr4_4:30802344-30802363 None:intergenic 40.0%
ACACTGAGTGAAAGCAGAAG+TGG + chr4_4:30797216-30797235 Msa0677280:intron 45.0%
! TGTGTGTAGAAGTGTGTGAG+AGG + chr4_4:30797264-30797283 Msa0677280:intron 45.0%
GAGTGTGGGAAAAATACACC+GGG + chr4_4:30797314-30797333 Msa0677280:intron 45.0%
TAGAATAGGAGTGGGTCTCA+CGG + chr4_4:30797382-30797401 Msa0677280:intron 45.0%
!! CTGGTTGTCGGTTTAGACAA+CGG + chr4_4:30797482-30797501 Msa0677280:intron 45.0%
!!! AACGGTCGTGGTTTTTTCTC+CGG + chr4_4:30797500-30797519 Msa0677280:intron 45.0%
!!! CGTGGTTTTTTCTCCGGTTT+TGG + chr4_4:30797506-30797525 Msa0677280:intron 45.0%
ATCTCACGGAATTGAAGCTC+TGG - chr4_4:30797614-30797633 None:intergenic 45.0%
! AGCGGATTCAGAACAACACA+CGG + chr4_4:30798039-30798058 Msa0677280:intron 45.0%
!! CATTGGTTGGCATTGATGCA+GGG + chr4_4:30798063-30798082 Msa0677280:intron 45.0%
TTATGGTGCAACTCCCATGT+TGG - chr4_4:30798131-30798150 None:intergenic 45.0%
TAGATAATAGAAGGGGGAGC+AGG + chr4_4:30798242-30798261 Msa0677280:intron 45.0%
GATGAAAGAGCTTCTGCTTG+AGG + chr4_4:30798393-30798412 Msa0677280:intron 45.0%
TGAAAGAGCTTCTGCTTGAG+GGG + chr4_4:30798395-30798414 Msa0677280:intron 45.0%
! TGCGAGGATAGTTTCCCTTT+TGG + chr4_4:30798432-30798451 Msa0677280:intron 45.0%
! AGGATAGTTTCCCTTTTGGC+TGG + chr4_4:30798436-30798455 Msa0677280:intron 45.0%
AATTGTTGGTCCCACGTGAA+AGG + chr4_4:30798467-30798486 Msa0677280:intron 45.0%
ACACTGAGTGAAAGCAGAAG+TGG + chr4_4:30797216-30797235 Msa0677280:intron 45.0%
! TGTGTGTAGAAGTGTGTGAG+AGG + chr4_4:30797264-30797283 Msa0677280:intron 45.0%
GAGTGTGGGAAAAATACACC+GGG + chr4_4:30797314-30797333 Msa0677280:intron 45.0%
TAGAATAGGAGTGGGTCTCA+CGG + chr4_4:30797382-30797401 Msa0677280:intron 45.0%
!! CTGGTTGTCGGTTTAGACAA+CGG + chr4_4:30797482-30797501 Msa0677280:intron 45.0%
!!! AACGGTCGTGGTTTTTTCTC+CGG + chr4_4:30797500-30797519 Msa0677280:intron 45.0%
!!! CGTGGTTTTTTCTCCGGTTT+TGG + chr4_4:30797506-30797525 Msa0677280:intron 45.0%
! GTTAGGGAGACCCTTTTGTT+GGG - chr4_4:30799016-30799035 None:intergenic 45.0%
TGATTGTTCCGGAGTTGCTT+CGG - chr4_4:30799170-30799189 None:intergenic 45.0%
TTCTTCTACTTCGCTGGACA+CGG - chr4_4:30799211-30799230 None:intergenic 45.0%
AGTGGAAGCTGAAGCAGATT+CGG + chr4_4:30799314-30799333 Msa0677280:CDS 45.0%
GTGGATGTTGTTGCTCATCT+TGG + chr4_4:30799405-30799424 Msa0677280:CDS 45.0%
AATCATTCGAATGGAGGGCA+TGG + chr4_4:30799657-30799676 Msa0677280:CDS 45.0%
!! GGCATTGACATCATAGTCGA+AGG - chr4_4:30799759-30799778 None:intergenic 45.0%
ATGTCAATGCCGCCTATGAT+TGG + chr4_4:30799768-30799787 Msa0677280:CDS 45.0%
AATGCCGCCTATGATTGGTA+TGG + chr4_4:30799773-30799792 Msa0677280:CDS 45.0%
ATGCCGCCTATGATTGGTAT+GGG + chr4_4:30799774-30799793 Msa0677280:CDS 45.0%
TGTCCCATACCAATCATAGG+CGG - chr4_4:30799780-30799799 None:intergenic 45.0%
GTATGGGACATCATCCACAT+GGG + chr4_4:30799790-30799809 Msa0677280:CDS 45.0%
ACATCATCCACATGGGCATA+TGG + chr4_4:30799797-30799816 Msa0677280:CDS 45.0%
CATCATCCACATGGGCATAT+GGG + chr4_4:30799798-30799817 Msa0677280:CDS 45.0%
ATCATCCACATGGGCATATG+GGG + chr4_4:30799799-30799818 Msa0677280:CDS 45.0%
TCTTCAGGTCAGCAATCACA+TGG + chr4_4:30799971-30799990 Msa0677280:intron 45.0%
CGGATGACAGCACAATGAAA+TGG - chr4_4:30801025-30801044 None:intergenic 45.0%
ATTGTGCTGTCATCCGCATA+TGG + chr4_4:30801029-30801048 Msa0677280:intron 45.0%
!! CTGAGAGTGTTGATCAATCC+GGG - chr4_4:30801256-30801275 None:intergenic 45.0%
TCCTGTCACGTAAATGTAGG+CGG + chr4_4:30801518-30801537 Msa0677280:three_prime_UTR 45.0%
TAGGCGGTGATTGTGAGTTA+AGG + chr4_4:30801534-30801553 Msa0677280:three_prime_UTR 45.0%
ACCACAGAGCAGGTTACAAA+TGG - chr4_4:30801747-30801766 None:intergenic 45.0%
GAACATTGATACCACAGAGC+AGG - chr4_4:30801757-30801776 None:intergenic 45.0%
GCGTACAATACACCAAATGG+TGG - chr4_4:30802104-30802123 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr4_4:30802107-30802126 None:intergenic 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr4_4:30802139-30802158 Msa0677280:three_prime_UTR 45.0%
TCATGTGACTGTAAGGTCAC+GGG - chr4_4:30802172-30802191 None:intergenic 45.0%
GTCATGTGACTGTAAGGTCA+CGG - chr4_4:30802173-30802192 None:intergenic 45.0%
TTGTTCAAGAGGGGTAACCT+TGG - chr4_4:30802215-30802234 None:intergenic 45.0%
! ACGAAGAACGTGTAACGGAG+TGG + chr4_4:30797025-30797044 Msa0677280:CDS 50.0%
! CGAAGAACGTGTAACGGAGT+GGG + chr4_4:30797026-30797045 Msa0677280:CDS 50.0%
! ACGTGTAACGGAGTGGGAAA+AGG + chr4_4:30797032-30797051 Msa0677280:CDS 50.0%
! AACGGAGTGGGAAAAGGTGT+TGG + chr4_4:30797038-30797057 Msa0677280:CDS 50.0%
!! GTGAAAGGTGCCAGCCAAAA+AGG + chr4_4:30797067-30797086 Msa0677280:intron 50.0%
TGTGGGAAAAATACACCGGG+TGG + chr4_4:30797317-30797336 Msa0677280:intron 50.0%
GTGGGAAAAATACACCGGGT+GGG + chr4_4:30797318-30797337 Msa0677280:intron 50.0%
AGAATAGGAGTGGGTCTCAC+GGG + chr4_4:30797383-30797402 Msa0677280:intron 50.0%
GTTGGGAAATAACAGGGCTG+AGG - chr4_4:30797584-30797603 None:intergenic 50.0%
!! GCCCTGTTATTTCCCAACAG+TGG + chr4_4:30797586-30797605 Msa0677280:intron 50.0%
! GAAGCTCTGGTACCACTGTT+GGG - chr4_4:30797601-30797620 None:intergenic 50.0%
! TGAAGCTCTGGTACCACTGT+TGG - chr4_4:30797602-30797621 None:intergenic 50.0%
! TTTTCAGAAACTGCTCCCCC+TGG - chr4_4:30797896-30797915 None:intergenic 50.0%
GCGGATTCAGAACAACACAC+GGG + chr4_4:30798040-30798059 Msa0677280:intron 50.0%
TCAGAACAACACACGGGCAT+TGG + chr4_4:30798046-30798065 Msa0677280:intron 50.0%
!! AACAACACACGGGCATTGGT+TGG + chr4_4:30798050-30798069 Msa0677280:intron 50.0%
!! GCATTGGTTGGCATTGATGC+AGG + chr4_4:30798062-30798081 Msa0677280:intron 50.0%
AACTCCCTGGAAGCCAACAT+GGG + chr4_4:30798115-30798134 Msa0677280:intron 50.0%
!! AACTCCCATGTTGGCTTCCA+GGG - chr4_4:30798122-30798141 None:intergenic 50.0%
TCGAAAGTCCTCCTGACCAA+GGG + chr4_4:30798315-30798334 Msa0677280:intron 50.0%
GGTGAGCATGATGAATTGCG+AGG + chr4_4:30798416-30798435 Msa0677280:intron 50.0%
!! AGTTTCCCTTTTGGCTGGAG+AGG + chr4_4:30798441-30798460 Msa0677280:intron 50.0%
!! GTTTCCCTTTTGGCTGGAGA+GGG + chr4_4:30798442-30798461 Msa0677280:intron 50.0%
TTCTCCCTCTCCAGCCAAAA+GGG - chr4_4:30798449-30798468 None:intergenic 50.0%
ATTCTCCCTCTCCAGCCAAA+AGG - chr4_4:30798450-30798469 None:intergenic 50.0%
!! GTGAAAGGTGCCAGCCAAAA+AGG + chr4_4:30797067-30797086 Msa0677280:intron 50.0%
TGTGGGAAAAATACACCGGG+TGG + chr4_4:30797317-30797336 Msa0677280:intron 50.0%
GTGGGAAAAATACACCGGGT+GGG + chr4_4:30797318-30797337 Msa0677280:intron 50.0%
AGAATAGGAGTGGGTCTCAC+GGG + chr4_4:30797383-30797402 Msa0677280:intron 50.0%
GTTGGGAAATAACAGGGCTG+AGG - chr4_4:30797584-30797603 None:intergenic 50.0%
! GGTTAGGGAGACCCTTTTGT+TGG - chr4_4:30799017-30799036 None:intergenic 50.0%
GAGTGAGATCGTGGAGGTTA+GGG - chr4_4:30799032-30799051 None:intergenic 50.0%
AAAGAGGAGTGAGATCGTGG+AGG - chr4_4:30799038-30799057 None:intergenic 50.0%
TGGAAAGAGGAGTGAGATCG+TGG - chr4_4:30799041-30799060 None:intergenic 50.0%
CGATCTCACTCCTCTTTCCA+TGG + chr4_4:30799041-30799060 Msa0677280:intron 50.0%
GGGATCAAAGCCATGGAAAG+AGG - chr4_4:30799054-30799073 None:intergenic 50.0%
!! TTCCATGGCTTTGATCCCAC+CGG + chr4_4:30799056-30799075 Msa0677280:intron 50.0%
GGTTGACGTCGAAGAGAGTA+CGG - chr4_4:30799119-30799138 None:intergenic 50.0%
! AAGAGAGAGTGTGTTGCGAG+AGG - chr4_4:30799145-30799164 None:intergenic 50.0%
TCTCTTCTCCGAAGCAACTC+CGG + chr4_4:30799159-30799178 Msa0677280:CDS 50.0%
TCTTCTACTTCGCTGGACAC+GGG - chr4_4:30799210-30799229 None:intergenic 50.0%
GACGATAAAAAGGCCGAGGT+TGG + chr4_4:30799353-30799372 Msa0677280:CDS 50.0%
!! TAAAAAGGCCGAGGTTGGTG+TGG + chr4_4:30799358-30799377 Msa0677280:CDS 50.0%
CCGGTTTCATGCAAACTCTG+CGG - chr4_4:30799603-30799622 None:intergenic 50.0%
CCGCAGAGTTTGCATGAAAC+CGG + chr4_4:30799600-30799619 Msa0677280:CDS 50.0%
! TCGAATGGAGGGCATGGAAA+TGG + chr4_4:30799663-30799682 Msa0677280:CDS 50.0%
! ATCATAGTCGAAGGTGGTGG+TGG - chr4_4:30799750-30799769 None:intergenic 50.0%
GACATCATAGTCGAAGGTGG+TGG - chr4_4:30799753-30799772 None:intergenic 50.0%
GGTATGGGACATCATCCACA+TGG + chr4_4:30799789-30799808 Msa0677280:CDS 50.0%
GATGAGTTTGCCTCCTCCTT+CGG + chr4_4:30799821-30799840 Msa0677280:CDS 50.0%
ATGAGTTTGCCTCCTCCTTC+GGG + chr4_4:30799822-30799841 Msa0677280:CDS 50.0%
TAAGAGCTAGAACCACCCGA+AGG - chr4_4:30799840-30799859 None:intergenic 50.0%
GGATGAGAATGTGGATTCGG+AGG - chr4_4:30799903-30799922 None:intergenic 50.0%
! GTGTTGATCAATCCGGGCAA+TGG - chr4_4:30801250-30801269 None:intergenic 50.0%
ACCGCCTACATTTACGTGAC+AGG - chr4_4:30801522-30801541 None:intergenic 50.0%
! TCAGGAGTACACGCACTACA+CGG - chr4_4:30801655-30801674 None:intergenic 50.0%
GCCATTTGTAACCTGCTCTG+TGG + chr4_4:30801743-30801762 Msa0677280:three_prime_UTR 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr4_4:30802195-30802214 Msa0677280:three_prime_UTR 50.0%
!! AGGTGTTGGTCCCACGTGAA+AGG + chr4_4:30797052-30797071 Msa0677280:CDS 55.0%
TTGGCTGGCACCTTTCACGT+GGG - chr4_4:30797065-30797084 None:intergenic 55.0%
TTTGGCTGGCACCTTTCACG+TGG - chr4_4:30797066-30797085 None:intergenic 55.0%
! GTCGGTTTAGACAACGGTCG+TGG + chr4_4:30797488-30797507 Msa0677280:intron 55.0%
!! GTGAAGGTGCTGAAGAAGGG+TGG + chr4_4:30797708-30797727 Msa0677280:intron 55.0%
TCGATGGCTGAAGAACTCCC+TGG + chr4_4:30798102-30798121 Msa0677280:intron 55.0%
GAACTCCCTGGAAGCCAACA+TGG + chr4_4:30798114-30798133 Msa0677280:intron 55.0%
!! CAACTCCCATGTTGGCTTCC+AGG - chr4_4:30798123-30798142 None:intergenic 55.0%
TAGAAGGGGGAGCAGGAAAG+CGG + chr4_4:30798249-30798268 Msa0677280:intron 55.0%
GTCGAAAGTCCTCCTGACCA+AGG + chr4_4:30798314-30798333 Msa0677280:intron 55.0%
GTACTGCCGTCTGCACTCAA+CGG - chr4_4:30798358-30798377 None:intergenic 55.0%
GGCTGGAGAGGGAGAATTGT+TGG + chr4_4:30798453-30798472 Msa0677280:intron 55.0%
TTGGCTGGCACCTTTCACGT+GGG - chr4_4:30797065-30797084 None:intergenic 55.0%
TTTGGCTGGCACCTTTCACG+TGG - chr4_4:30797066-30797085 None:intergenic 55.0%
! GTCGGTTTAGACAACGGTCG+TGG + chr4_4:30797488-30797507 Msa0677280:intron 55.0%
GGAGTGAGATCGTGGAGGTT+AGG - chr4_4:30799033-30799052 None:intergenic 55.0%
TTCCGCTTTCAGCATCTCCC+CGG + chr4_4:30799086-30799105 Msa0677280:intron 55.0%
! AAGAGAGTACGGAGAGGCTC+CGG - chr4_4:30799108-30799127 None:intergenic 55.0%
! ACGTCGAAGAGAGTACGGAG+AGG - chr4_4:30799114-30799133 None:intergenic 55.0%
GAACCTGATCCATCTCGCTC+GGG - chr4_4:30799252-30799271 None:intergenic 55.0%
CGAACCTGATCCATCTCGCT+CGG - chr4_4:30799253-30799272 None:intergenic 55.0%
CGGAGACGATAAAAAGGCCG+AGG + chr4_4:30799349-30799368 Msa0677280:CDS 55.0%
TCATGCAAACTCTGCGGCAC+AGG - chr4_4:30799597-30799616 None:intergenic 55.0%
! GGAGGGCATGGAAATGGACA+TGG + chr4_4:30799669-30799688 Msa0677280:CDS 55.0%
!! GGTGGTGGTGGATAAGGCAT+AGG - chr4_4:30799738-30799757 None:intergenic 55.0%
!! GTCGAAGGTGGTGGTGGATA+AGG - chr4_4:30799744-30799763 None:intergenic 55.0%
CTCATCCCCATATGCCCATG+TGG - chr4_4:30799807-30799826 None:intergenic 55.0%
GGGGTTCTGCTCGTTTCTTC+AGG + chr4_4:30799956-30799975 Msa0677280:intron 55.0%
ATGCAGGAGCTTCAGTGCAC+CGG - chr4_4:30802059-30802078 None:intergenic 55.0%
ACTGAAGCTCCTGCATACGC+AGG + chr4_4:30802063-30802082 Msa0677280:three_prime_UTR 55.0%
CTGAAGCTCCTGCATACGCA+GGG + chr4_4:30802064-30802083 Msa0677280:three_prime_UTR 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr4_4:30802160-30802179 None:intergenic 55.0%
CCTGAACACCCTTGGTCAGG+AGG - chr4_4:30798326-30798345 None:intergenic 60.0%
!! CCTCCTGACCAAGGGTGTTC+AGG + chr4_4:30798323-30798342 Msa0677280:intron 60.0%
!! CCTGACCAAGGGTGTTCAGG+CGG + chr4_4:30798326-30798345 Msa0677280:intron 60.0%
CGGGTTCCGTTGAGTGCAGA+CGG + chr4_4:30798349-30798368 Msa0677280:intron 60.0%
CTCCGGTGGGATCAAAGCCA+TGG - chr4_4:30799061-30799080 None:intergenic 60.0%
CTGAAAGCGGAAGCGAGCTC+CGG - chr4_4:30799078-30799097 None:intergenic 60.0%
CTCCGGGGAGATGCTGAAAG+CGG - chr4_4:30799091-30799110 None:intergenic 60.0%
! AGAGAGTACGGAGAGGCTCC+GGG - chr4_4:30799107-30799126 None:intergenic 60.0%
AGAGTGTGTTGCGAGAGGCG+CGG - chr4_4:30799140-30799159 None:intergenic 60.0%
GACGAAGAACCCGAGCGAGA+TGG + chr4_4:30799240-30799259 Msa0677280:CDS 60.0%
GAACCCGAGCGAGATGGATC+AGG + chr4_4:30799246-30799265 Msa0677280:CDS 60.0%
TGTGGGGTCCACACCAACCT+CGG - chr4_4:30799369-30799388 None:intergenic 60.0%
AGTTTGCCTCCTCCTTCGGG+TGG + chr4_4:30799825-30799844 Msa0677280:CDS 60.0%
CTAGAACCACCCGAAGGAGG+AGG - chr4_4:30799834-30799853 None:intergenic 60.0%
GAGCTAGAACCACCCGAAGG+AGG - chr4_4:30799837-30799856 None:intergenic 60.0%
TGCAGGAGCTTCAGTGCACC+GGG - chr4_4:30802058-30802077 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr4_4:30802091-30802110 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr4_4:30802206-30802225 None:intergenic 60.0%
CCGCCTGAACACCCTTGGTC+AGG - chr4_4:30798329-30798348 None:intergenic 65.0%
!! GACCAAGGGTGTTCAGGCGG+CGG + chr4_4:30798329-30798348 Msa0677280:intron 65.0%
!! ACCAAGGGTGTTCAGGCGGC+GGG + chr4_4:30798330-30798349 Msa0677280:intron 65.0%
AAGCGGAAGCGAGCTCCGGT+GGG - chr4_4:30799074-30799093 None:intergenic 65.0%
AAAGCGGAAGCGAGCTCCGG+TGG - chr4_4:30799075-30799094 None:intergenic 65.0%
! GAGAGTACGGAGAGGCTCCG+GGG - chr4_4:30799106-30799125 None:intergenic 65.0%
GCTCCTGCATACGCAGGGTC+CGG + chr4_4:30802069-30802088 Msa0677280:three_prime_UTR 65.0%
CTCCTGCATACGCAGGGTCC+GGG + chr4_4:30802070-30802089 Msa0677280:three_prime_UTR 65.0%
TTCCCGGACCCTGCGTATGC+AGG - chr4_4:30802075-30802094 None:intergenic 65.0%
TGCATACGCAGGGTCCGGGA+AGG + chr4_4:30802074-30802093 Msa0677280:three_prime_UTR 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr4_4:30802075-30802094 Msa0677280:three_prime_UTR 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr4_4:30802076-30802095 Msa0677280:three_prime_UTR 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr4_4:30802089-30802108 Msa0677280:three_prime_UTR 65.0%
ACCCGCCGCCTGAACACCCT+TGG - chr4_4:30798334-30798353 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 30797003 30802408 30797003 ID=Msa0677280;Name=Msa0677280
chr4_4 mRNA 30797003 30802408 30797003 ID=Msa0677280-mRNA-1;Parent=Msa0677280;Name=Msa0677280-mRNA-1;_AED=0.22;_eAED=0.26;_QI=0|0|0.2|1|0.25|0.2|5|1041|287
chr4_4 exon 30797003 30797073 30797003 ID=Msa0677280-mRNA-1:exon:7687;Parent=Msa0677280-mRNA-1
chr4_4 exon 30799098 30799267 30799098 ID=Msa0677280-mRNA-1:exon:7688;Parent=Msa0677280-mRNA-1
chr4_4 exon 30799310 30799519 30799310 ID=Msa0677280-mRNA-1:exon:7689;Parent=Msa0677280-mRNA-1
chr4_4 exon 30799544 30799942 30799544 ID=Msa0677280-mRNA-1:exon:7690;Parent=Msa0677280-mRNA-1
chr4_4 exon 30801354 30802408 30801354 ID=Msa0677280-mRNA-1:exon:7691;Parent=Msa0677280-mRNA-1
chr4_4 CDS 30797003 30797073 30797003 ID=Msa0677280-mRNA-1:cds;Parent=Msa0677280-mRNA-1
chr4_4 CDS 30799098 30799267 30799098 ID=Msa0677280-mRNA-1:cds;Parent=Msa0677280-mRNA-1
chr4_4 CDS 30799310 30799519 30799310 ID=Msa0677280-mRNA-1:cds;Parent=Msa0677280-mRNA-1
chr4_4 CDS 30799544 30799942 30799544 ID=Msa0677280-mRNA-1:cds;Parent=Msa0677280-mRNA-1
chr4_4 CDS 30801354 30801367 30801354 ID=Msa0677280-mRNA-1:cds;Parent=Msa0677280-mRNA-1
chr4_4 three_prime_UTR 30801368 30802408 30801368 ID=Msa0677280-mRNA-1:three_prime_utr;Parent=Msa0677280-mRNA-1
Gene Sequence

>Msa0677280

ATGGGTGAAGAGGTTCGAACAGACGAAGAACGTGTAACGGAGTGGGAAAAGGTGTTGGTCCCACGTGAAAGCATCTCCCCGGAGCCTCTCCGTACTCTCTTCGACGTCAACCGCGCCTCTCGCAACACACTCTCTCTTCTCCGAAGCAACTCCGGAACAATCACTCATCAAATCAATCAACCCGTGTCCAGCGAAGTAGAAGAAGTTGAAGAAGACGAAGAACCCGAGCGAGATGGATCAGAAGAAGTGGAAGCTGAAGCAGATTCGGCTGTTAGAACAACGGAGACGATAAAAAGGCCGAGGTTGGTGTGGACCCCACAGCTACATAAAAGATTTGTGGATGTTGTTGCTCATCTTGGGATAAAGAACGCGGTTCCGAAAACGATTATGCAGTTGATGAATGTTGAAGGATTAACAAGAGAAAATGTTGCTAGTCATTTGCAGAAATATCGTCTTTCAAATGATGCACCTTCTTCTTCTGATCATCTTTTTGCTTCTACACCTGTGCCGCAGAGTTTGCATGAAACCGGTTCTGCTAATCATTCTCATTCACATTCAAATGCTAATCATTCGAATGGAGGGCATGGAAATGGACATGGAAATTCGCATTCTCATTCACATTCGCATCATTCTGTGACGATTCCTATGCCTTATCCACCACCACCTTCGACTATGATGTCAATGCCGCCTATGATTGGTATGGGACATCATCCACATGGGCATATGGGGATGAGTTTGCCTCCTCCTTCGGGTGGTTCTAGCTCTTATCGCTCGCATCCATTTAATATGATGCATCATAGGGATTGGCCTCCGAATCCACATTCTCATCCTCATATGTCTTCCAATGATAATTCAAATGTTTGA
Protein sequence

>Msa0677280

MGEEVRTDEERVTEWEKVLVPRESISPEPLRTLFDVNRASRNTLSLLRSNSGTITHQINQPVSSEVEEVEEDEEPERDGSEEVEAEADSAVRTTETIKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLSNDAPSSSDHLFASTPVPQSLHETGSANHSHSHSNANHSNGGHGNGHGNSHSHSHSHHSVTIPMPYPPPPSTMMSMPPMIGMGHHPHGHMGMSLPPPSGGSSSYRSHPFNMMHHRDWPPNPHSHPHMSSNDNSNV*