Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677810 | KEH29599.1 | 73.214 | 392 | 35 | 5 | 1 | 333 | 1 | 381 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677810 | A0A072UIK6 | 73.214 | 392 | 35 | 5 | 1 | 333 | 1 | 381 | 0.0 | 544 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0677810 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677810 | MtrunA17_Chr4g0022641 | 73.214 | 392 | 35 | 5 | 1 | 333 | 1 | 381 | 0.0 | 544 |
| Msa0677810 | MtrunA17_Chr4g0022641 | 66.667 | 63 | 12 | 2 | 224 | 286 | 329 | 382 | 1.04e-13 | 71.6 |
| Msa0677810 | MtrunA17_Chr4g0059631 | 53.265 | 291 | 86 | 4 | 1 | 277 | 1 | 255 | 2.78e-97 | 288 |
| Msa0677810 | MtrunA17_Chr1g0212471 | 56.931 | 202 | 66 | 4 | 1 | 200 | 1 | 183 | 1.54e-71 | 220 |
| Msa0677810 | MtrunA17_Chr2g0303981 | 46.561 | 189 | 95 | 3 | 3 | 190 | 5 | 188 | 5.02e-50 | 165 |
| Msa0677810 | MtrunA17_Chr6g0449851 | 37.113 | 194 | 108 | 3 | 1 | 190 | 1 | 184 | 4.34e-36 | 132 |
| Msa0677810 | MtrunA17_Chr6g0457851 | 34.197 | 193 | 124 | 1 | 1 | 190 | 11 | 203 | 3.54e-32 | 123 |
| Msa0677810 | MtrunA17_Chr1g0212151 | 35.323 | 201 | 126 | 2 | 1 | 198 | 1 | 200 | 1.24e-31 | 121 |
| Msa0677810 | MtrunA17_Chr6g0449861 | 36.471 | 170 | 105 | 1 | 1 | 167 | 9 | 178 | 3.43e-30 | 117 |
| Msa0677810 | MtrunA17_Chr2g0283941 | 25.641 | 156 | 106 | 2 | 1 | 148 | 1 | 154 | 3.58e-13 | 68.6 |
| Msa0677810 | MtrunA17_Chr3g0107381 | 28.676 | 136 | 91 | 4 | 1 | 135 | 1 | 131 | 6.42e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677810 | AT5G55690.1 | 32.877 | 146 | 87 | 2 | 1 | 142 | 1 | 139 | 1.01e-15 | 76.6 |
| Msa0677810 | AT5G55690.2 | 32.877 | 146 | 87 | 2 | 1 | 142 | 1 | 139 | 1.01e-15 | 76.6 |
Find 53 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTCAGATTTCCTTAATA+TGG | 0.236107 | 4_4:+32402062 | Msa0677810:CDS |
| TTTACAATTGTAGGGTCTTC+TGG | 0.267825 | 4_4:-32401889 | None:intergenic |
| GTGAAGAGGGCAATGAAATT+TGG | 0.269654 | 4_4:+32402694 | Msa0677810:CDS |
| TTGTGGACATCAAATATTTC+AGG | 0.290143 | 4_4:-32401955 | None:intergenic |
| CAATGCTCTCATGCAAAATA+TGG | 0.294005 | 4_4:+32402200 | Msa0677810:CDS |
| TCTAAATTTGTTAGCAAGAC+TGG | 0.334083 | 4_4:+32401805 | Msa0677810:CDS |
| AAGTTGGATACTTCTTCTTA+AGG | 0.361888 | 4_4:-32402038 | None:intergenic |
| TTTAACCAATCGTCAAAATC+AGG | 0.377207 | 4_4:-32402447 | None:intergenic |
| AGTTGGATACTTCTTCTTAA+GGG | 0.378758 | 4_4:-32402037 | None:intergenic |
| ATGATTGATTTCACTAATCT+TGG | 0.384115 | 4_4:+32402384 | Msa0677810:CDS |
| GGGTCTTCTGGCCATGTCAT+TGG | 0.398342 | 4_4:-32401877 | None:intergenic |
| TCTTAATTTCAAAGTATTTG+TGG | 0.402565 | 4_4:-32401972 | None:intergenic |
| AACTTAGCCAACCACATGAT+TGG | 0.404058 | 4_4:+32402607 | Msa0677810:CDS |
| TCTTTCCATGCAAACTGATC+AGG | 0.410075 | 4_4:-32402507 | None:intergenic |
| TGATGTGTTGTTGCATTTGA+GGG | 0.426219 | 4_4:-32402284 | None:intergenic |
| GAGGGCAATGCAAGTTATCT+TGG | 0.432079 | 4_4:+32402555 | Msa0677810:CDS |
| TGCTATGCATGGCGTTAACT+TGG | 0.433866 | 4_4:-32402254 | None:intergenic |
| AAGGGTATCTTTCCTCACTT+TGG | 0.441633 | 4_4:-32402019 | None:intergenic |
| TTGATGTGTTGTTGCATTTG+AGG | 0.449551 | 4_4:-32402285 | None:intergenic |
| AGCATGGAGTTTACAATTGT+AGG | 0.450184 | 4_4:-32401898 | None:intergenic |
| ATGAGGCAAATCAACATGAT+TGG | 0.473560 | 4_4:-32402325 | None:intergenic |
| GCATGGAGTTTACAATTGTA+GGG | 0.478326 | 4_4:-32401897 | None:intergenic |
| GATTGGTTAAATCAACTAGA+TGG | 0.481740 | 4_4:+32402459 | Msa0677810:CDS |
| AGTTGCATTGTTGATGAACT+AGG | 0.485117 | 4_4:-32402588 | None:intergenic |
| TTGCCCTCTTCACTTTGAGA+TGG | 0.492565 | 4_4:-32402684 | None:intergenic |
| GATTTACCCAATCATGTGGT+TGG | 0.499565 | 4_4:-32402614 | None:intergenic |
| ACTTAGCCAACCACATGATT+GGG | 0.501075 | 4_4:+32402608 | Msa0677810:CDS |
| AGTTGCTTTGTAGATGAACT+AGG | 0.501324 | 4_4:-32402417 | None:intergenic |
| TGGTTTGTTGATGAATTATG+AGG | 0.510382 | 4_4:-32402342 | None:intergenic |
| AGGAAATCTGAATGCCAAGT+TGG | 0.511291 | 4_4:-32402054 | None:intergenic |
| TCTCACTAATATCATGAGGT+TGG | 0.521834 | 4_4:-32402362 | None:intergenic |
| TGGAAAAGAAATATCTTTCG+AGG | 0.525349 | 4_4:-32402664 | None:intergenic |
| AGCTGACCAACACCATCATC+TGG | 0.526054 | 4_4:-32402639 | None:intergenic |
| TTGATTGTGTATGATGATGA+TGG | 0.536425 | 4_4:+32401841 | Msa0677810:CDS |
| ATATGAGCATAAGAAGATTG+AGG | 0.542149 | 4_4:+32401927 | Msa0677810:CDS |
| TTTCCATCTCAAAGTGAAGA+GGG | 0.553124 | 4_4:+32402681 | Msa0677810:CDS |
| GTCAACCTGATCAGTTTGCA+TGG | 0.562911 | 4_4:+32402502 | Msa0677810:CDS |
| ATGCTCATATTCTTGAAGCA+TGG | 0.569236 | 4_4:-32401914 | None:intergenic |
| TGATGATGATGGTAATAATG+TGG | 0.569879 | 4_4:+32401852 | Msa0677810:CDS |
| AGGGATGCTATTGCTATGCA+TGG | 0.574776 | 4_4:-32402265 | None:intergenic |
| TGGGTAAATCAACCAGATGA+TGG | 0.612935 | 4_4:+32402627 | Msa0677810:CDS |
| GTTAACTTGGCTTGAATGTG+AGG | 0.614041 | 4_4:-32402241 | None:intergenic |
| AATCAACCAGATGATGGTGT+TGG | 0.618028 | 4_4:+32402633 | Msa0677810:CDS |
| GCAACAACACATCAATGAGA+TGG | 0.623711 | 4_4:+32402293 | Msa0677810:CDS |
| GATGATGATGGTAATAATGT+GGG | 0.631187 | 4_4:+32401853 | Msa0677810:CDS |
| TTAAGAAGAAGTATCCAACT+TGG | 0.637255 | 4_4:+32402040 | Msa0677810:CDS |
| ATCATCTCACTAATATCATG+AGG | 0.641661 | 4_4:-32402366 | None:intergenic |
| GGTTGATTTACCCAATCATG+TGG | 0.643283 | 4_4:-32402618 | None:intergenic |
| ACAACACATCAATGAGATGG+TGG | 0.646608 | 4_4:+32402296 | Msa0677810:CDS |
| ATAATGTGGGACCAATGACA+TGG | 0.658982 | 4_4:+32401866 | Msa0677810:CDS |
| AAGCTAAGATAACCAAAGTG+AGG | 0.659175 | 4_4:+32402007 | Msa0677810:CDS |
| TGGTTAAATCAACTAGATGG+TGG | 0.663107 | 4_4:+32402462 | Msa0677810:CDS |
| TGCTTTGTAGATGAACTAGG+AGG | 0.674710 | 4_4:-32402414 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTGAAATTAAGAAAAAAA+AGG | + | chr4_4:32401981-32402000 | Msa0677810:CDS | 15.0% |
| !!! | CTTTGAAATTAAGAAAAAAA+AGG | + | chr4_4:32401981-32402000 | Msa0677810:CDS | 15.0% |
| !!! | TCATTTTGAATGTATTTCAT+TGG | - | chr4_4:32401730-32401749 | None:intergenic | 20.0% |
| !!! | TCTTAATTTCAAAGTATTTG+TGG | - | chr4_4:32401975-32401994 | None:intergenic | 20.0% |
| !!! | TCATTTTGAATGTATTTCAT+TGG | - | chr4_4:32401730-32401749 | None:intergenic | 20.0% |
| !!! | TCTTAATTTCAAAGTATTTG+TGG | - | chr4_4:32401975-32401994 | None:intergenic | 20.0% |
| ! | GCTTTCAAAGAAAGAAAAAA+TGG | + | chr4_4:32401766-32401785 | Msa0677810:CDS | 25.0% |
| !!! | AAAGAAAAAATGGATTAGCA+AGG | + | chr4_4:32401776-32401795 | Msa0677810:CDS | 25.0% |
| !!! | GTTGATTTTCTTCCATATTA+AGG | - | chr4_4:32402077-32402096 | None:intergenic | 25.0% |
| !! | ATGATTGATTTCACTAATCT+TGG | + | chr4_4:32402384-32402403 | Msa0677810:CDS | 25.0% |
| !! | TTTTTCATCTCAAAATGAAG+AGG | + | chr4_4:32402536-32402555 | Msa0677810:CDS | 25.0% |
| !! | TTTTCATCTCAAAATGAAGA+GGG | + | chr4_4:32402537-32402556 | Msa0677810:CDS | 25.0% |
| ! | GCTTTCAAAGAAAGAAAAAA+TGG | + | chr4_4:32401766-32401785 | Msa0677810:CDS | 25.0% |
| !!! | AAAGAAAAAATGGATTAGCA+AGG | + | chr4_4:32401776-32401795 | Msa0677810:CDS | 25.0% |
| !!! | GTTGATTTTCTTCCATATTA+AGG | - | chr4_4:32402077-32402096 | None:intergenic | 25.0% |
| !! | ATGATTGATTTCACTAATCT+TGG | + | chr4_4:32402384-32402403 | Msa0677810:CDS | 25.0% |
| !! | TTTTTCATCTCAAAATGAAG+AGG | + | chr4_4:32402536-32402555 | Msa0677810:CDS | 25.0% |
| !! | TTTTCATCTCAAAATGAAGA+GGG | + | chr4_4:32402537-32402556 | Msa0677810:CDS | 25.0% |
| !! | TCTAAATTTGTTAGCAAGAC+TGG | + | chr4_4:32401805-32401824 | Msa0677810:CDS | 30.0% |
| ! | TTGATTGTGTATGATGATGA+TGG | + | chr4_4:32401841-32401860 | Msa0677810:CDS | 30.0% |
| !! | TGATGATGATGGTAATAATG+TGG | + | chr4_4:32401852-32401871 | Msa0677810:CDS | 30.0% |
| !! | GATGATGATGGTAATAATGT+GGG | + | chr4_4:32401853-32401872 | Msa0677810:CDS | 30.0% |
| ATATGAGCATAAGAAGATTG+AGG | + | chr4_4:32401927-32401946 | Msa0677810:CDS | 30.0% | |
| TTGTGGACATCAAATATTTC+AGG | - | chr4_4:32401958-32401977 | None:intergenic | 30.0% | |
| AGTTGGATACTTCTTCTTAA+GGG | - | chr4_4:32402040-32402059 | None:intergenic | 30.0% | |
| AAGTTGGATACTTCTTCTTA+AGG | - | chr4_4:32402041-32402060 | None:intergenic | 30.0% | |
| !! | TTAAGAAGAAGTATCCAACT+TGG | + | chr4_4:32402040-32402059 | Msa0677810:CDS | 30.0% |
| GCATTCAGATTTCCTTAATA+TGG | + | chr4_4:32402062-32402081 | Msa0677810:CDS | 30.0% | |
| !! | TGGTTTGTTGATGAATTATG+AGG | - | chr4_4:32402345-32402364 | None:intergenic | 30.0% |
| ATCATCTCACTAATATCATG+AGG | - | chr4_4:32402369-32402388 | None:intergenic | 30.0% | |
| TTTAACCAATCGTCAAAATC+AGG | - | chr4_4:32402450-32402469 | None:intergenic | 30.0% | |
| ! | GATTGGTTAAATCAACTAGA+TGG | + | chr4_4:32402459-32402478 | Msa0677810:CDS | 30.0% |
| TGGAAAAGAAATATCTTTCG+AGG | - | chr4_4:32402667-32402686 | None:intergenic | 30.0% | |
| !! | TCTAAATTTGTTAGCAAGAC+TGG | + | chr4_4:32401805-32401824 | Msa0677810:CDS | 30.0% |
| ! | TTGATTGTGTATGATGATGA+TGG | + | chr4_4:32401841-32401860 | Msa0677810:CDS | 30.0% |
| !! | TGATGATGATGGTAATAATG+TGG | + | chr4_4:32401852-32401871 | Msa0677810:CDS | 30.0% |
| !! | GATGATGATGGTAATAATGT+GGG | + | chr4_4:32401853-32401872 | Msa0677810:CDS | 30.0% |
| ATATGAGCATAAGAAGATTG+AGG | + | chr4_4:32401927-32401946 | Msa0677810:CDS | 30.0% | |
| TTGTGGACATCAAATATTTC+AGG | - | chr4_4:32401958-32401977 | None:intergenic | 30.0% | |
| AGTTGGATACTTCTTCTTAA+GGG | - | chr4_4:32402040-32402059 | None:intergenic | 30.0% | |
| AAGTTGGATACTTCTTCTTA+AGG | - | chr4_4:32402041-32402060 | None:intergenic | 30.0% | |
| !! | TTAAGAAGAAGTATCCAACT+TGG | + | chr4_4:32402040-32402059 | Msa0677810:CDS | 30.0% |
| GCATTCAGATTTCCTTAATA+TGG | + | chr4_4:32402062-32402081 | Msa0677810:CDS | 30.0% | |
| !! | TGGTTTGTTGATGAATTATG+AGG | - | chr4_4:32402345-32402364 | None:intergenic | 30.0% |
| ATCATCTCACTAATATCATG+AGG | - | chr4_4:32402369-32402388 | None:intergenic | 30.0% | |
| TTTAACCAATCGTCAAAATC+AGG | - | chr4_4:32402450-32402469 | None:intergenic | 30.0% | |
| ! | GATTGGTTAAATCAACTAGA+TGG | + | chr4_4:32402459-32402478 | Msa0677810:CDS | 30.0% |
| TGGAAAAGAAATATCTTTCG+AGG | - | chr4_4:32402667-32402686 | None:intergenic | 30.0% | |
| TTTACAATTGTAGGGTCTTC+TGG | - | chr4_4:32401892-32401911 | None:intergenic | 35.0% | |
| GCATGGAGTTTACAATTGTA+GGG | - | chr4_4:32401900-32401919 | None:intergenic | 35.0% | |
| AGCATGGAGTTTACAATTGT+AGG | - | chr4_4:32401901-32401920 | None:intergenic | 35.0% | |
| ATGCTCATATTCTTGAAGCA+TGG | - | chr4_4:32401917-32401936 | None:intergenic | 35.0% | |
| AAGCTAAGATAACCAAAGTG+AGG | + | chr4_4:32402007-32402026 | Msa0677810:CDS | 35.0% | |
| ! | TGATTTTGTGATCACAAGCT+TGG | - | chr4_4:32402134-32402153 | None:intergenic | 35.0% |
| CAATGCTCTCATGCAAAATA+TGG | + | chr4_4:32402200-32402219 | Msa0677810:CDS | 35.0% | |
| ! | TGATGTGTTGTTGCATTTGA+GGG | - | chr4_4:32402287-32402306 | None:intergenic | 35.0% |
| ! | TTGATGTGTTGTTGCATTTG+AGG | - | chr4_4:32402288-32402307 | None:intergenic | 35.0% |
| ATGAGGCAAATCAACATGAT+TGG | - | chr4_4:32402328-32402347 | None:intergenic | 35.0% | |
| TCTCACTAATATCATGAGGT+TGG | - | chr4_4:32402365-32402384 | None:intergenic | 35.0% | |
| ! | AGTTGCTTTGTAGATGAACT+AGG | - | chr4_4:32402420-32402439 | None:intergenic | 35.0% |
| TGGTTAAATCAACTAGATGG+TGG | + | chr4_4:32402462-32402481 | Msa0677810:CDS | 35.0% | |
| ! | AGTTGCATTGTTGATGAACT+AGG | - | chr4_4:32402591-32402610 | None:intergenic | 35.0% |
| ! | TTTTCCATCTCAAAGTGAAG+AGG | + | chr4_4:32402680-32402699 | Msa0677810:CDS | 35.0% |
| TTTCCATCTCAAAGTGAAGA+GGG | + | chr4_4:32402681-32402700 | Msa0677810:CDS | 35.0% | |
| TTTACAATTGTAGGGTCTTC+TGG | - | chr4_4:32401892-32401911 | None:intergenic | 35.0% | |
| GCATGGAGTTTACAATTGTA+GGG | - | chr4_4:32401900-32401919 | None:intergenic | 35.0% | |
| AGCATGGAGTTTACAATTGT+AGG | - | chr4_4:32401901-32401920 | None:intergenic | 35.0% | |
| ATGCTCATATTCTTGAAGCA+TGG | - | chr4_4:32401917-32401936 | None:intergenic | 35.0% | |
| AAGCTAAGATAACCAAAGTG+AGG | + | chr4_4:32402007-32402026 | Msa0677810:CDS | 35.0% | |
| ! | TGATTTTGTGATCACAAGCT+TGG | - | chr4_4:32402134-32402153 | None:intergenic | 35.0% |
| CAATGCTCTCATGCAAAATA+TGG | + | chr4_4:32402200-32402219 | Msa0677810:CDS | 35.0% | |
| ! | TGATGTGTTGTTGCATTTGA+GGG | - | chr4_4:32402287-32402306 | None:intergenic | 35.0% |
| ! | TTGATGTGTTGTTGCATTTG+AGG | - | chr4_4:32402288-32402307 | None:intergenic | 35.0% |
| ATGAGGCAAATCAACATGAT+TGG | - | chr4_4:32402328-32402347 | None:intergenic | 35.0% | |
| TCTCACTAATATCATGAGGT+TGG | - | chr4_4:32402365-32402384 | None:intergenic | 35.0% | |
| ! | AGTTGCTTTGTAGATGAACT+AGG | - | chr4_4:32402420-32402439 | None:intergenic | 35.0% |
| TGGTTAAATCAACTAGATGG+TGG | + | chr4_4:32402462-32402481 | Msa0677810:CDS | 35.0% | |
| ! | AGTTGCATTGTTGATGAACT+AGG | - | chr4_4:32402591-32402610 | None:intergenic | 35.0% |
| ! | TTTTCCATCTCAAAGTGAAG+AGG | + | chr4_4:32402680-32402699 | Msa0677810:CDS | 35.0% |
| TTTCCATCTCAAAGTGAAGA+GGG | + | chr4_4:32402681-32402700 | Msa0677810:CDS | 35.0% | |
| ATAATGTGGGACCAATGACA+TGG | + | chr4_4:32401866-32401885 | Msa0677810:CDS | 40.0% | |
| !! | AAGGGTATCTTTCCTCACTT+TGG | - | chr4_4:32402022-32402041 | None:intergenic | 40.0% |
| AGGAAATCTGAATGCCAAGT+TGG | - | chr4_4:32402057-32402076 | None:intergenic | 40.0% | |
| ! | GTTAACTTGGCTTGAATGTG+AGG | - | chr4_4:32402244-32402263 | None:intergenic | 40.0% |
| GCAACAACACATCAATGAGA+TGG | + | chr4_4:32402293-32402312 | Msa0677810:CDS | 40.0% | |
| ACAACACATCAATGAGATGG+TGG | + | chr4_4:32402296-32402315 | Msa0677810:CDS | 40.0% | |
| TGCTTTGTAGATGAACTAGG+AGG | - | chr4_4:32402417-32402436 | None:intergenic | 40.0% | |
| !! | AGATGGTGGTGTTTTGAATC+AGG | + | chr4_4:32402476-32402495 | Msa0677810:CDS | 40.0% |
| TCTTTCCATGCAAACTGATC+AGG | - | chr4_4:32402510-32402529 | None:intergenic | 40.0% | |
| AACTTAGCCAACCACATGAT+TGG | + | chr4_4:32402607-32402626 | Msa0677810:CDS | 40.0% | |
| ACTTAGCCAACCACATGATT+GGG | + | chr4_4:32402608-32402627 | Msa0677810:CDS | 40.0% | |
| GATTTACCCAATCATGTGGT+TGG | - | chr4_4:32402617-32402636 | None:intergenic | 40.0% | |
| ! | GGTTGATTTACCCAATCATG+TGG | - | chr4_4:32402621-32402640 | None:intergenic | 40.0% |
| TGGGTAAATCAACCAGATGA+TGG | + | chr4_4:32402627-32402646 | Msa0677810:CDS | 40.0% | |
| ! | AATCAACCAGATGATGGTGT+TGG | + | chr4_4:32402633-32402652 | Msa0677810:CDS | 40.0% |
| GTGAAGAGGGCAATGAAATT+TGG | + | chr4_4:32402694-32402713 | Msa0677810:CDS | 40.0% | |
| ATAATGTGGGACCAATGACA+TGG | + | chr4_4:32401866-32401885 | Msa0677810:CDS | 40.0% | |
| !! | AAGGGTATCTTTCCTCACTT+TGG | - | chr4_4:32402022-32402041 | None:intergenic | 40.0% |
| AGGAAATCTGAATGCCAAGT+TGG | - | chr4_4:32402057-32402076 | None:intergenic | 40.0% | |
| ! | GTTAACTTGGCTTGAATGTG+AGG | - | chr4_4:32402244-32402263 | None:intergenic | 40.0% |
| GCAACAACACATCAATGAGA+TGG | + | chr4_4:32402293-32402312 | Msa0677810:CDS | 40.0% | |
| ACAACACATCAATGAGATGG+TGG | + | chr4_4:32402296-32402315 | Msa0677810:CDS | 40.0% | |
| TGCTTTGTAGATGAACTAGG+AGG | - | chr4_4:32402417-32402436 | None:intergenic | 40.0% | |
| !! | AGATGGTGGTGTTTTGAATC+AGG | + | chr4_4:32402476-32402495 | Msa0677810:CDS | 40.0% |
| TCTTTCCATGCAAACTGATC+AGG | - | chr4_4:32402510-32402529 | None:intergenic | 40.0% | |
| AACTTAGCCAACCACATGAT+TGG | + | chr4_4:32402607-32402626 | Msa0677810:CDS | 40.0% | |
| ACTTAGCCAACCACATGATT+GGG | + | chr4_4:32402608-32402627 | Msa0677810:CDS | 40.0% | |
| GATTTACCCAATCATGTGGT+TGG | - | chr4_4:32402617-32402636 | None:intergenic | 40.0% | |
| ! | GGTTGATTTACCCAATCATG+TGG | - | chr4_4:32402621-32402640 | None:intergenic | 40.0% |
| TGGGTAAATCAACCAGATGA+TGG | + | chr4_4:32402627-32402646 | Msa0677810:CDS | 40.0% | |
| ! | AATCAACCAGATGATGGTGT+TGG | + | chr4_4:32402633-32402652 | Msa0677810:CDS | 40.0% |
| GTGAAGAGGGCAATGAAATT+TGG | + | chr4_4:32402694-32402713 | Msa0677810:CDS | 40.0% | |
| TGCTATGCATGGCGTTAACT+TGG | - | chr4_4:32402257-32402276 | None:intergenic | 45.0% | |
| AGGGATGCTATTGCTATGCA+TGG | - | chr4_4:32402268-32402287 | None:intergenic | 45.0% | |
| !! | GTCAGCCTGATTTTGACGAT+TGG | + | chr4_4:32402442-32402461 | Msa0677810:CDS | 45.0% |
| GTCAACCTGATCAGTTTGCA+TGG | + | chr4_4:32402502-32402521 | Msa0677810:CDS | 45.0% | |
| GAGGGCAATGCAAGTTATCT+TGG | + | chr4_4:32402555-32402574 | Msa0677810:CDS | 45.0% | |
| ! | TTGCCCTCTTCACTTTGAGA+TGG | - | chr4_4:32402687-32402706 | None:intergenic | 45.0% |
| TGCTATGCATGGCGTTAACT+TGG | - | chr4_4:32402257-32402276 | None:intergenic | 45.0% | |
| AGGGATGCTATTGCTATGCA+TGG | - | chr4_4:32402268-32402287 | None:intergenic | 45.0% | |
| !! | GTCAGCCTGATTTTGACGAT+TGG | + | chr4_4:32402442-32402461 | Msa0677810:CDS | 45.0% |
| GTCAACCTGATCAGTTTGCA+TGG | + | chr4_4:32402502-32402521 | Msa0677810:CDS | 45.0% | |
| GAGGGCAATGCAAGTTATCT+TGG | + | chr4_4:32402555-32402574 | Msa0677810:CDS | 45.0% | |
| ! | TTGCCCTCTTCACTTTGAGA+TGG | - | chr4_4:32402687-32402706 | None:intergenic | 45.0% |
| AGCTGACCAACACCATCATC+TGG | - | chr4_4:32402642-32402661 | None:intergenic | 50.0% | |
| AGCTGACCAACACCATCATC+TGG | - | chr4_4:32402642-32402661 | None:intergenic | 50.0% | |
| GGGTCTTCTGGCCATGTCAT+TGG | - | chr4_4:32401880-32401899 | None:intergenic | 55.0% | |
| GGGTCTTCTGGCCATGTCAT+TGG | - | chr4_4:32401880-32401899 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 32401709 | 32402725 | 32401709 | ID=Msa0677810;Name=Msa0677810 |
| chr4_4 | mRNA | 32401709 | 32402725 | 32401709 | ID=Msa0677810-mRNA-1;Parent=Msa0677810;Name=Msa0677810-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|338 |
| chr4_4 | exon | 32401709 | 32402725 | 32401709 | ID=Msa0677810-mRNA-1:exon:7968;Parent=Msa0677810-mRNA-1 |
| chr4_4 | CDS | 32401709 | 32402725 | 32401709 | ID=Msa0677810-mRNA-1:cds;Parent=Msa0677810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
