AlfalfaGEDB | Msa0677810

M. sativa cultivar zhongmu-4 / Msa0677810

KEGG: K09260
GO: -
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677810	KEH29599.1	73.214	392	35	5	1	333	1	381	0.0	544

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677810	A0A072UIK6	73.214	392	35	5	1	333	1	381	0.0	544

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TFs/TRs:

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Gene ID	Type	Classification
Msa0677810	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677810	MtrunA17_Chr4g0022641	73.214	392	35	5	1	333	1	381	0.0	544
Msa0677810	MtrunA17_Chr4g0022641	66.667	63	12	2	224	286	329	382	1.04e-13	71.6
Msa0677810	MtrunA17_Chr4g0059631	53.265	291	86	4	1	277	1	255	2.78e-97	288
Msa0677810	MtrunA17_Chr1g0212471	56.931	202	66	4	1	200	1	183	1.54e-71	220
Msa0677810	MtrunA17_Chr2g0303981	46.561	189	95	3	3	190	5	188	5.02e-50	165
Msa0677810	MtrunA17_Chr6g0449851	37.113	194	108	3	1	190	1	184	4.34e-36	132
Msa0677810	MtrunA17_Chr6g0457851	34.197	193	124	1	1	190	11	203	3.54e-32	123
Msa0677810	MtrunA17_Chr1g0212151	35.323	201	126	2	1	198	1	200	1.24e-31	121
Msa0677810	MtrunA17_Chr6g0449861	36.471	170	105	1	1	167	9	178	3.43e-30	117
Msa0677810	MtrunA17_Chr2g0283941	25.641	156	106	2	1	148	1	154	3.58e-13	68.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0677810	AT5G55690.1	32.877	146	87	2	1	142	1	139	1.01e-15	76.6
Msa0677810	AT5G55690.2	32.877	146	87	2	1	142	1	139	1.01e-15	76.6

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Find 53 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTAGCCAACCACATGAT+TGG	0.404058	4_4:+32402607	Msa0677810:CDS
AAGCTAAGATAACCAAAGTG+AGG	0.659175	4_4:+32402007	Msa0677810:CDS
AAGGGTATCTTTCCTCACTT+TGG	0.441633	4_4:-32402019	None:intergenic
AAGTTGGATACTTCTTCTTA+AGG	0.361888	4_4:-32402038	None:intergenic
AATCAACCAGATGATGGTGT+TGG	0.618028	4_4:+32402633	Msa0677810:CDS
ACAACACATCAATGAGATGG+TGG	0.646608	4_4:+32402296	Msa0677810:CDS
ACTTAGCCAACCACATGATT+GGG	0.501075	4_4:+32402608	Msa0677810:CDS
AGCATGGAGTTTACAATTGT+AGG	0.450184	4_4:-32401898	None:intergenic
AGCTGACCAACACCATCATC+TGG	0.526054	4_4:-32402639	None:intergenic
AGGAAATCTGAATGCCAAGT+TGG	0.511291	4_4:-32402054	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATGAGCATAAGAAGATTG+AGG	+	chr4_4:32401927-32401946	Msa0677810:CDS	30.0%
TTGTGGACATCAAATATTTC+AGG	-	chr4_4:32401958-32401977	None:intergenic	30.0%
AGTTGGATACTTCTTCTTAA+GGG	-	chr4_4:32402040-32402059	None:intergenic	30.0%
AAGTTGGATACTTCTTCTTA+AGG	-	chr4_4:32402041-32402060	None:intergenic	30.0%
GCATTCAGATTTCCTTAATA+TGG	+	chr4_4:32402062-32402081	Msa0677810:CDS	30.0%
ATCATCTCACTAATATCATG+AGG	-	chr4_4:32402369-32402388	None:intergenic	30.0%
TTTAACCAATCGTCAAAATC+AGG	-	chr4_4:32402450-32402469	None:intergenic	30.0%
TGGAAAAGAAATATCTTTCG+AGG	-	chr4_4:32402667-32402686	None:intergenic	30.0%
ATATGAGCATAAGAAGATTG+AGG	+	chr4_4:32401927-32401946	Msa0677810:CDS	30.0%
TTGTGGACATCAAATATTTC+AGG	-	chr4_4:32401958-32401977	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	32401709	32402725	32401709	ID=Msa0677810;Name=Msa0677810
chr4_4	mRNA	32401709	32402725	32401709	ID=Msa0677810-mRNA-1;Parent=Msa0677810;Name=Msa0677810-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|338
chr4_4	exon	32401709	32402725	32401709	ID=Msa0677810-mRNA-1:exon:7968;Parent=Msa0677810-mRNA-1
chr4_4	CDS	32401709	32402725	32401709	ID=Msa0677810-mRNA-1:cds;Parent=Msa0677810-mRNA-1

Gene Sequence

>Msa0677810

ATGGGTCGTAAAAAAATACCAATGAAATACATTCAAAATGAGAAATCTCGCAAAATAGCTTTCAAAGAAAGAAAAAATGGATTAGCAAGGAAACTTTCTAAATTTGTTAGCAAGACTGGAGCAAGAGCTTGTTTGATTGTGTATGATGATGATGGTAATAATGTGGGACCAATGACATGGCCAGAAGACCCTACAATTGTAAACTCCATGCTTCAAGAATATGAGCATAAGAAGATTGAGGAAACTCCTGAAATATTTGATGTCCACAAATACTTTGAAATTAAGAAAAAAAAGGTTGAAGCTAAGATAACCAAAGTGAGGAAAGATACCCTTAAGAAGAAGTATCCAACTTGGCATTCAGATTTCCTTAATATGGAAGAAAATCAACTCAGAGACTTCATTGCTACTGTAAATGATAAGATCCAAGCTTGTGATCACAAAATCAGCATGTTGAAAAATATGCAACATAGTGAAACTAGTTTCTTGCAAAACAATGCTCTCATGCAAAATATGGTTCAAGAGAGTGTTGTTTCCTCACATTCAAGCCAAGTTAACGCCATGCATAGCAATAGCATCCCTCAAATGCAACAACACATCAATGAGATGGTGGATTTGACCAATCATGTTGATTTGCCTCATAATTCATCAACAAACCAACCTCATGATATTAGTGAGATGATTGATTTCACTAATCTTGGTGATTTGCCTCCTAGTTCATCTACAAAGCAACTTAGTCAGCCTGATTTTGACGATTGGTTAAATCAACTAGATGGTGGTGTTTTGAATCAGGCTAGTCAACCTGATCAGTTTGCATGGAAAGATCTTTCTTTTTCATCTCAAAATGAAGAGGGCAATGCAAGTTATCTTGGTAATTTTCTTCCTAGTTCATCAACAATGCAACTTAGCCAACCACATGATTGGGTAAATCAACCAGATGATGGTGTTGGTCAGCTTGCCTCGAAAGATATTTCTTTTCCATCTCAAAGTGAAGAGGGCAATGAAATTTGGATGATTTGA

Protein sequence

>Msa0677810

MGRKKIPMKYIQNEKSRKIAFKERKNGLARKLSKFVSKTGARACLIVYDDDGNNVGPMTWPEDPTIVNSMLQEYEHKKIEETPEIFDVHKYFEIKKKKVEAKITKVRKDTLKKKYPTWHSDFLNMEENQLRDFIATVNDKIQACDHKISMLKNMQHSETSFLQNNALMQNMVQESVVSSHSSQVNAMHSNSIPQMQQHINEMVDLTNHVDLPHNSSTNQPHDISEMIDFTNLGDLPPSSSTKQLSQPDFDDWLNQLDGGVLNQASQPDQFAWKDLSFSSQNEEGNASYLGNFLPSSSTMQLSQPHDWVNQPDDGVGQLASKDISFPSQSEEGNEIWMI*