Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677830 | KEH29599.1 | 73.214 | 392 | 35 | 5 | 1 | 333 | 1 | 381 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677830 | A0A072UIK6 | 73.214 | 392 | 35 | 5 | 1 | 333 | 1 | 381 | 0.0 | 544 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0677830 | TF | MADS-M-type |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677830 | MtrunA17_Chr4g0022641 | 73.214 | 392 | 35 | 5 | 1 | 333 | 1 | 381 | 0.0 | 544 |
| Msa0677830 | MtrunA17_Chr4g0022641 | 66.667 | 63 | 12 | 2 | 224 | 286 | 329 | 382 | 1.04e-13 | 71.6 |
| Msa0677830 | MtrunA17_Chr4g0059631 | 53.265 | 291 | 86 | 4 | 1 | 277 | 1 | 255 | 2.78e-97 | 288 |
| Msa0677830 | MtrunA17_Chr1g0212471 | 56.931 | 202 | 66 | 4 | 1 | 200 | 1 | 183 | 1.54e-71 | 220 |
| Msa0677830 | MtrunA17_Chr2g0303981 | 46.561 | 189 | 95 | 3 | 3 | 190 | 5 | 188 | 5.02e-50 | 165 |
| Msa0677830 | MtrunA17_Chr6g0449851 | 37.113 | 194 | 108 | 3 | 1 | 190 | 1 | 184 | 4.34e-36 | 132 |
| Msa0677830 | MtrunA17_Chr6g0457851 | 34.197 | 193 | 124 | 1 | 1 | 190 | 11 | 203 | 3.54e-32 | 123 |
| Msa0677830 | MtrunA17_Chr1g0212151 | 35.323 | 201 | 126 | 2 | 1 | 198 | 1 | 200 | 1.24e-31 | 121 |
| Msa0677830 | MtrunA17_Chr6g0449861 | 36.471 | 170 | 105 | 1 | 1 | 167 | 9 | 178 | 3.43e-30 | 117 |
| Msa0677830 | MtrunA17_Chr2g0283941 | 25.641 | 156 | 106 | 2 | 1 | 148 | 1 | 154 | 3.58e-13 | 68.6 |
| Msa0677830 | MtrunA17_Chr3g0107381 | 28.676 | 136 | 91 | 4 | 1 | 135 | 1 | 131 | 6.42e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677830 | AT5G55690.1 | 32.877 | 146 | 87 | 2 | 1 | 142 | 1 | 139 | 1.01e-15 | 76.6 |
| Msa0677830 | AT5G55690.2 | 32.877 | 146 | 87 | 2 | 1 | 142 | 1 | 139 | 1.01e-15 | 76.6 |
Find 53 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTCAGATTTCCTTAATA+TGG | 0.236107 | 4_4:+32406686 | Msa0677830:CDS |
| TTTACAATTGTAGGGTCTTC+TGG | 0.267825 | 4_4:-32406513 | None:intergenic |
| GTGAAGAGGGCAATGAAATT+TGG | 0.269654 | 4_4:+32407318 | Msa0677830:CDS |
| TTGTGGACATCAAATATTTC+AGG | 0.290143 | 4_4:-32406579 | None:intergenic |
| CAATGCTCTCATGCAAAATA+TGG | 0.294005 | 4_4:+32406824 | Msa0677830:CDS |
| TCTAAATTTGTTAGCAAGAC+TGG | 0.334083 | 4_4:+32406429 | Msa0677830:CDS |
| AAGTTGGATACTTCTTCTTA+AGG | 0.361888 | 4_4:-32406662 | None:intergenic |
| TTTAACCAATCGTCAAAATC+AGG | 0.377207 | 4_4:-32407071 | None:intergenic |
| AGTTGGATACTTCTTCTTAA+GGG | 0.378758 | 4_4:-32406661 | None:intergenic |
| ATGATTGATTTCACTAATCT+TGG | 0.384115 | 4_4:+32407008 | Msa0677830:CDS |
| GGGTCTTCTGGCCATGTCAT+TGG | 0.398342 | 4_4:-32406501 | None:intergenic |
| TCTTAATTTCAAAGTATTTG+TGG | 0.402565 | 4_4:-32406596 | None:intergenic |
| AACTTAGCCAACCACATGAT+TGG | 0.404058 | 4_4:+32407231 | Msa0677830:CDS |
| TCTTTCCATGCAAACTGATC+AGG | 0.410075 | 4_4:-32407131 | None:intergenic |
| TGATGTGTTGTTGCATTTGA+GGG | 0.426219 | 4_4:-32406908 | None:intergenic |
| GAGGGCAATGCAAGTTATCT+TGG | 0.432079 | 4_4:+32407179 | Msa0677830:CDS |
| TGCTATGCATGGCGTTAACT+TGG | 0.433866 | 4_4:-32406878 | None:intergenic |
| AAGGGTATCTTTCCTCACTT+TGG | 0.441633 | 4_4:-32406643 | None:intergenic |
| TTGATGTGTTGTTGCATTTG+AGG | 0.449551 | 4_4:-32406909 | None:intergenic |
| AGCATGGAGTTTACAATTGT+AGG | 0.450184 | 4_4:-32406522 | None:intergenic |
| ATGAGGCAAATCAACATGAT+TGG | 0.473560 | 4_4:-32406949 | None:intergenic |
| GCATGGAGTTTACAATTGTA+GGG | 0.478326 | 4_4:-32406521 | None:intergenic |
| GATTGGTTAAATCAACTAGA+TGG | 0.481740 | 4_4:+32407083 | Msa0677830:CDS |
| AGTTGCATTGTTGATGAACT+AGG | 0.485117 | 4_4:-32407212 | None:intergenic |
| TTGCCCTCTTCACTTTGAGA+TGG | 0.492565 | 4_4:-32407308 | None:intergenic |
| GATTTACCCAATCATGTGGT+TGG | 0.499565 | 4_4:-32407238 | None:intergenic |
| ACTTAGCCAACCACATGATT+GGG | 0.501075 | 4_4:+32407232 | Msa0677830:CDS |
| AGTTGCTTTGTAGATGAACT+AGG | 0.501324 | 4_4:-32407041 | None:intergenic |
| TGGTTTGTTGATGAATTATG+AGG | 0.510382 | 4_4:-32406966 | None:intergenic |
| AGGAAATCTGAATGCCAAGT+TGG | 0.511291 | 4_4:-32406678 | None:intergenic |
| TCTCACTAATATCATGAGGT+TGG | 0.521834 | 4_4:-32406986 | None:intergenic |
| TGGAAAAGAAATATCTTTCG+AGG | 0.525349 | 4_4:-32407288 | None:intergenic |
| AGCTGACCAACACCATCATC+TGG | 0.526054 | 4_4:-32407263 | None:intergenic |
| TTGATTGTGTATGATGATGA+TGG | 0.536425 | 4_4:+32406465 | Msa0677830:CDS |
| ATATGAGCATAAGAAGATTG+AGG | 0.542149 | 4_4:+32406551 | Msa0677830:CDS |
| TTTCCATCTCAAAGTGAAGA+GGG | 0.553124 | 4_4:+32407305 | Msa0677830:CDS |
| GTCAACCTGATCAGTTTGCA+TGG | 0.562911 | 4_4:+32407126 | Msa0677830:CDS |
| ATGCTCATATTCTTGAAGCA+TGG | 0.569236 | 4_4:-32406538 | None:intergenic |
| TGATGATGATGGTAATAATG+TGG | 0.569879 | 4_4:+32406476 | Msa0677830:CDS |
| AGGGATGCTATTGCTATGCA+TGG | 0.574776 | 4_4:-32406889 | None:intergenic |
| TGGGTAAATCAACCAGATGA+TGG | 0.612935 | 4_4:+32407251 | Msa0677830:CDS |
| GTTAACTTGGCTTGAATGTG+AGG | 0.614041 | 4_4:-32406865 | None:intergenic |
| AATCAACCAGATGATGGTGT+TGG | 0.618028 | 4_4:+32407257 | Msa0677830:CDS |
| GCAACAACACATCAATGAGA+TGG | 0.623711 | 4_4:+32406917 | Msa0677830:CDS |
| GATGATGATGGTAATAATGT+GGG | 0.631187 | 4_4:+32406477 | Msa0677830:CDS |
| TTAAGAAGAAGTATCCAACT+TGG | 0.637255 | 4_4:+32406664 | Msa0677830:CDS |
| ATCATCTCACTAATATCATG+AGG | 0.641661 | 4_4:-32406990 | None:intergenic |
| GGTTGATTTACCCAATCATG+TGG | 0.643283 | 4_4:-32407242 | None:intergenic |
| ACAACACATCAATGAGATGG+TGG | 0.646608 | 4_4:+32406920 | Msa0677830:CDS |
| ATAATGTGGGACCAATGACA+TGG | 0.658982 | 4_4:+32406490 | Msa0677830:CDS |
| AAGCTAAGATAACCAAAGTG+AGG | 0.659175 | 4_4:+32406631 | Msa0677830:CDS |
| TGGTTAAATCAACTAGATGG+TGG | 0.663107 | 4_4:+32407086 | Msa0677830:CDS |
| TGCTTTGTAGATGAACTAGG+AGG | 0.674710 | 4_4:-32407038 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTGAAATTAAGAAAAAAA+AGG | + | chr4_4:32406605-32406624 | Msa0677830:CDS | 15.0% |
| !!! | CTTTGAAATTAAGAAAAAAA+AGG | + | chr4_4:32406605-32406624 | Msa0677830:CDS | 15.0% |
| !!! | TCATTTTGAATGTATTTCAT+TGG | - | chr4_4:32406354-32406373 | None:intergenic | 20.0% |
| !!! | TCTTAATTTCAAAGTATTTG+TGG | - | chr4_4:32406599-32406618 | None:intergenic | 20.0% |
| !!! | TCATTTTGAATGTATTTCAT+TGG | - | chr4_4:32406354-32406373 | None:intergenic | 20.0% |
| !!! | TCTTAATTTCAAAGTATTTG+TGG | - | chr4_4:32406599-32406618 | None:intergenic | 20.0% |
| ! | GCTTTCAAAGAAAGAAAAAA+TGG | + | chr4_4:32406390-32406409 | Msa0677830:CDS | 25.0% |
| !!! | AAAGAAAAAATGGATTAGCA+AGG | + | chr4_4:32406400-32406419 | Msa0677830:CDS | 25.0% |
| !!! | GTTGATTTTCTTCCATATTA+AGG | - | chr4_4:32406701-32406720 | None:intergenic | 25.0% |
| !! | ATGATTGATTTCACTAATCT+TGG | + | chr4_4:32407008-32407027 | Msa0677830:CDS | 25.0% |
| !! | TTTTTCATCTCAAAATGAAG+AGG | + | chr4_4:32407160-32407179 | Msa0677830:CDS | 25.0% |
| !! | TTTTCATCTCAAAATGAAGA+GGG | + | chr4_4:32407161-32407180 | Msa0677830:CDS | 25.0% |
| ! | GCTTTCAAAGAAAGAAAAAA+TGG | + | chr4_4:32406390-32406409 | Msa0677830:CDS | 25.0% |
| !!! | AAAGAAAAAATGGATTAGCA+AGG | + | chr4_4:32406400-32406419 | Msa0677830:CDS | 25.0% |
| !!! | GTTGATTTTCTTCCATATTA+AGG | - | chr4_4:32406701-32406720 | None:intergenic | 25.0% |
| !! | ATGATTGATTTCACTAATCT+TGG | + | chr4_4:32407008-32407027 | Msa0677830:CDS | 25.0% |
| !! | TTTTTCATCTCAAAATGAAG+AGG | + | chr4_4:32407160-32407179 | Msa0677830:CDS | 25.0% |
| !! | TTTTCATCTCAAAATGAAGA+GGG | + | chr4_4:32407161-32407180 | Msa0677830:CDS | 25.0% |
| !! | TCTAAATTTGTTAGCAAGAC+TGG | + | chr4_4:32406429-32406448 | Msa0677830:CDS | 30.0% |
| ! | TTGATTGTGTATGATGATGA+TGG | + | chr4_4:32406465-32406484 | Msa0677830:CDS | 30.0% |
| !! | TGATGATGATGGTAATAATG+TGG | + | chr4_4:32406476-32406495 | Msa0677830:CDS | 30.0% |
| !! | GATGATGATGGTAATAATGT+GGG | + | chr4_4:32406477-32406496 | Msa0677830:CDS | 30.0% |
| ATATGAGCATAAGAAGATTG+AGG | + | chr4_4:32406551-32406570 | Msa0677830:CDS | 30.0% | |
| TTGTGGACATCAAATATTTC+AGG | - | chr4_4:32406582-32406601 | None:intergenic | 30.0% | |
| AGTTGGATACTTCTTCTTAA+GGG | - | chr4_4:32406664-32406683 | None:intergenic | 30.0% | |
| AAGTTGGATACTTCTTCTTA+AGG | - | chr4_4:32406665-32406684 | None:intergenic | 30.0% | |
| !! | TTAAGAAGAAGTATCCAACT+TGG | + | chr4_4:32406664-32406683 | Msa0677830:CDS | 30.0% |
| GCATTCAGATTTCCTTAATA+TGG | + | chr4_4:32406686-32406705 | Msa0677830:CDS | 30.0% | |
| !! | TGGTTTGTTGATGAATTATG+AGG | - | chr4_4:32406969-32406988 | None:intergenic | 30.0% |
| ATCATCTCACTAATATCATG+AGG | - | chr4_4:32406993-32407012 | None:intergenic | 30.0% | |
| TTTAACCAATCGTCAAAATC+AGG | - | chr4_4:32407074-32407093 | None:intergenic | 30.0% | |
| ! | GATTGGTTAAATCAACTAGA+TGG | + | chr4_4:32407083-32407102 | Msa0677830:CDS | 30.0% |
| TGGAAAAGAAATATCTTTCG+AGG | - | chr4_4:32407291-32407310 | None:intergenic | 30.0% | |
| !! | TCTAAATTTGTTAGCAAGAC+TGG | + | chr4_4:32406429-32406448 | Msa0677830:CDS | 30.0% |
| ! | TTGATTGTGTATGATGATGA+TGG | + | chr4_4:32406465-32406484 | Msa0677830:CDS | 30.0% |
| !! | TGATGATGATGGTAATAATG+TGG | + | chr4_4:32406476-32406495 | Msa0677830:CDS | 30.0% |
| !! | GATGATGATGGTAATAATGT+GGG | + | chr4_4:32406477-32406496 | Msa0677830:CDS | 30.0% |
| ATATGAGCATAAGAAGATTG+AGG | + | chr4_4:32406551-32406570 | Msa0677830:CDS | 30.0% | |
| TTGTGGACATCAAATATTTC+AGG | - | chr4_4:32406582-32406601 | None:intergenic | 30.0% | |
| AGTTGGATACTTCTTCTTAA+GGG | - | chr4_4:32406664-32406683 | None:intergenic | 30.0% | |
| AAGTTGGATACTTCTTCTTA+AGG | - | chr4_4:32406665-32406684 | None:intergenic | 30.0% | |
| !! | TTAAGAAGAAGTATCCAACT+TGG | + | chr4_4:32406664-32406683 | Msa0677830:CDS | 30.0% |
| GCATTCAGATTTCCTTAATA+TGG | + | chr4_4:32406686-32406705 | Msa0677830:CDS | 30.0% | |
| !! | TGGTTTGTTGATGAATTATG+AGG | - | chr4_4:32406969-32406988 | None:intergenic | 30.0% |
| ATCATCTCACTAATATCATG+AGG | - | chr4_4:32406993-32407012 | None:intergenic | 30.0% | |
| TTTAACCAATCGTCAAAATC+AGG | - | chr4_4:32407074-32407093 | None:intergenic | 30.0% | |
| ! | GATTGGTTAAATCAACTAGA+TGG | + | chr4_4:32407083-32407102 | Msa0677830:CDS | 30.0% |
| TGGAAAAGAAATATCTTTCG+AGG | - | chr4_4:32407291-32407310 | None:intergenic | 30.0% | |
| TTTACAATTGTAGGGTCTTC+TGG | - | chr4_4:32406516-32406535 | None:intergenic | 35.0% | |
| GCATGGAGTTTACAATTGTA+GGG | - | chr4_4:32406524-32406543 | None:intergenic | 35.0% | |
| AGCATGGAGTTTACAATTGT+AGG | - | chr4_4:32406525-32406544 | None:intergenic | 35.0% | |
| ATGCTCATATTCTTGAAGCA+TGG | - | chr4_4:32406541-32406560 | None:intergenic | 35.0% | |
| AAGCTAAGATAACCAAAGTG+AGG | + | chr4_4:32406631-32406650 | Msa0677830:CDS | 35.0% | |
| ! | TGATTTTGTGATCACAAGCT+TGG | - | chr4_4:32406758-32406777 | None:intergenic | 35.0% |
| CAATGCTCTCATGCAAAATA+TGG | + | chr4_4:32406824-32406843 | Msa0677830:CDS | 35.0% | |
| ! | TGATGTGTTGTTGCATTTGA+GGG | - | chr4_4:32406911-32406930 | None:intergenic | 35.0% |
| ! | TTGATGTGTTGTTGCATTTG+AGG | - | chr4_4:32406912-32406931 | None:intergenic | 35.0% |
| ATGAGGCAAATCAACATGAT+TGG | - | chr4_4:32406952-32406971 | None:intergenic | 35.0% | |
| TCTCACTAATATCATGAGGT+TGG | - | chr4_4:32406989-32407008 | None:intergenic | 35.0% | |
| ! | AGTTGCTTTGTAGATGAACT+AGG | - | chr4_4:32407044-32407063 | None:intergenic | 35.0% |
| TGGTTAAATCAACTAGATGG+TGG | + | chr4_4:32407086-32407105 | Msa0677830:CDS | 35.0% | |
| ! | AGTTGCATTGTTGATGAACT+AGG | - | chr4_4:32407215-32407234 | None:intergenic | 35.0% |
| ! | TTTTCCATCTCAAAGTGAAG+AGG | + | chr4_4:32407304-32407323 | Msa0677830:CDS | 35.0% |
| TTTCCATCTCAAAGTGAAGA+GGG | + | chr4_4:32407305-32407324 | Msa0677830:CDS | 35.0% | |
| TTTACAATTGTAGGGTCTTC+TGG | - | chr4_4:32406516-32406535 | None:intergenic | 35.0% | |
| GCATGGAGTTTACAATTGTA+GGG | - | chr4_4:32406524-32406543 | None:intergenic | 35.0% | |
| AGCATGGAGTTTACAATTGT+AGG | - | chr4_4:32406525-32406544 | None:intergenic | 35.0% | |
| ATGCTCATATTCTTGAAGCA+TGG | - | chr4_4:32406541-32406560 | None:intergenic | 35.0% | |
| AAGCTAAGATAACCAAAGTG+AGG | + | chr4_4:32406631-32406650 | Msa0677830:CDS | 35.0% | |
| ! | TGATTTTGTGATCACAAGCT+TGG | - | chr4_4:32406758-32406777 | None:intergenic | 35.0% |
| CAATGCTCTCATGCAAAATA+TGG | + | chr4_4:32406824-32406843 | Msa0677830:CDS | 35.0% | |
| ! | TGATGTGTTGTTGCATTTGA+GGG | - | chr4_4:32406911-32406930 | None:intergenic | 35.0% |
| ! | TTGATGTGTTGTTGCATTTG+AGG | - | chr4_4:32406912-32406931 | None:intergenic | 35.0% |
| ATGAGGCAAATCAACATGAT+TGG | - | chr4_4:32406952-32406971 | None:intergenic | 35.0% | |
| TCTCACTAATATCATGAGGT+TGG | - | chr4_4:32406989-32407008 | None:intergenic | 35.0% | |
| ! | AGTTGCTTTGTAGATGAACT+AGG | - | chr4_4:32407044-32407063 | None:intergenic | 35.0% |
| TGGTTAAATCAACTAGATGG+TGG | + | chr4_4:32407086-32407105 | Msa0677830:CDS | 35.0% | |
| ! | AGTTGCATTGTTGATGAACT+AGG | - | chr4_4:32407215-32407234 | None:intergenic | 35.0% |
| ! | TTTTCCATCTCAAAGTGAAG+AGG | + | chr4_4:32407304-32407323 | Msa0677830:CDS | 35.0% |
| TTTCCATCTCAAAGTGAAGA+GGG | + | chr4_4:32407305-32407324 | Msa0677830:CDS | 35.0% | |
| ATAATGTGGGACCAATGACA+TGG | + | chr4_4:32406490-32406509 | Msa0677830:CDS | 40.0% | |
| !! | AAGGGTATCTTTCCTCACTT+TGG | - | chr4_4:32406646-32406665 | None:intergenic | 40.0% |
| AGGAAATCTGAATGCCAAGT+TGG | - | chr4_4:32406681-32406700 | None:intergenic | 40.0% | |
| ! | GTTAACTTGGCTTGAATGTG+AGG | - | chr4_4:32406868-32406887 | None:intergenic | 40.0% |
| GCAACAACACATCAATGAGA+TGG | + | chr4_4:32406917-32406936 | Msa0677830:CDS | 40.0% | |
| ACAACACATCAATGAGATGG+TGG | + | chr4_4:32406920-32406939 | Msa0677830:CDS | 40.0% | |
| TGCTTTGTAGATGAACTAGG+AGG | - | chr4_4:32407041-32407060 | None:intergenic | 40.0% | |
| !! | AGATGGTGGTGTTTTGAATC+AGG | + | chr4_4:32407100-32407119 | Msa0677830:CDS | 40.0% |
| TCTTTCCATGCAAACTGATC+AGG | - | chr4_4:32407134-32407153 | None:intergenic | 40.0% | |
| AACTTAGCCAACCACATGAT+TGG | + | chr4_4:32407231-32407250 | Msa0677830:CDS | 40.0% | |
| ACTTAGCCAACCACATGATT+GGG | + | chr4_4:32407232-32407251 | Msa0677830:CDS | 40.0% | |
| GATTTACCCAATCATGTGGT+TGG | - | chr4_4:32407241-32407260 | None:intergenic | 40.0% | |
| ! | GGTTGATTTACCCAATCATG+TGG | - | chr4_4:32407245-32407264 | None:intergenic | 40.0% |
| TGGGTAAATCAACCAGATGA+TGG | + | chr4_4:32407251-32407270 | Msa0677830:CDS | 40.0% | |
| ! | AATCAACCAGATGATGGTGT+TGG | + | chr4_4:32407257-32407276 | Msa0677830:CDS | 40.0% |
| GTGAAGAGGGCAATGAAATT+TGG | + | chr4_4:32407318-32407337 | Msa0677830:CDS | 40.0% | |
| ATAATGTGGGACCAATGACA+TGG | + | chr4_4:32406490-32406509 | Msa0677830:CDS | 40.0% | |
| !! | AAGGGTATCTTTCCTCACTT+TGG | - | chr4_4:32406646-32406665 | None:intergenic | 40.0% |
| AGGAAATCTGAATGCCAAGT+TGG | - | chr4_4:32406681-32406700 | None:intergenic | 40.0% | |
| ! | GTTAACTTGGCTTGAATGTG+AGG | - | chr4_4:32406868-32406887 | None:intergenic | 40.0% |
| GCAACAACACATCAATGAGA+TGG | + | chr4_4:32406917-32406936 | Msa0677830:CDS | 40.0% | |
| ACAACACATCAATGAGATGG+TGG | + | chr4_4:32406920-32406939 | Msa0677830:CDS | 40.0% | |
| TGCTTTGTAGATGAACTAGG+AGG | - | chr4_4:32407041-32407060 | None:intergenic | 40.0% | |
| !! | AGATGGTGGTGTTTTGAATC+AGG | + | chr4_4:32407100-32407119 | Msa0677830:CDS | 40.0% |
| TCTTTCCATGCAAACTGATC+AGG | - | chr4_4:32407134-32407153 | None:intergenic | 40.0% | |
| AACTTAGCCAACCACATGAT+TGG | + | chr4_4:32407231-32407250 | Msa0677830:CDS | 40.0% | |
| ACTTAGCCAACCACATGATT+GGG | + | chr4_4:32407232-32407251 | Msa0677830:CDS | 40.0% | |
| GATTTACCCAATCATGTGGT+TGG | - | chr4_4:32407241-32407260 | None:intergenic | 40.0% | |
| ! | GGTTGATTTACCCAATCATG+TGG | - | chr4_4:32407245-32407264 | None:intergenic | 40.0% |
| TGGGTAAATCAACCAGATGA+TGG | + | chr4_4:32407251-32407270 | Msa0677830:CDS | 40.0% | |
| ! | AATCAACCAGATGATGGTGT+TGG | + | chr4_4:32407257-32407276 | Msa0677830:CDS | 40.0% |
| GTGAAGAGGGCAATGAAATT+TGG | + | chr4_4:32407318-32407337 | Msa0677830:CDS | 40.0% | |
| TGCTATGCATGGCGTTAACT+TGG | - | chr4_4:32406881-32406900 | None:intergenic | 45.0% | |
| AGGGATGCTATTGCTATGCA+TGG | - | chr4_4:32406892-32406911 | None:intergenic | 45.0% | |
| !! | GTCAGCCTGATTTTGACGAT+TGG | + | chr4_4:32407066-32407085 | Msa0677830:CDS | 45.0% |
| GTCAACCTGATCAGTTTGCA+TGG | + | chr4_4:32407126-32407145 | Msa0677830:CDS | 45.0% | |
| GAGGGCAATGCAAGTTATCT+TGG | + | chr4_4:32407179-32407198 | Msa0677830:CDS | 45.0% | |
| ! | TTGCCCTCTTCACTTTGAGA+TGG | - | chr4_4:32407311-32407330 | None:intergenic | 45.0% |
| TGCTATGCATGGCGTTAACT+TGG | - | chr4_4:32406881-32406900 | None:intergenic | 45.0% | |
| AGGGATGCTATTGCTATGCA+TGG | - | chr4_4:32406892-32406911 | None:intergenic | 45.0% | |
| !! | GTCAGCCTGATTTTGACGAT+TGG | + | chr4_4:32407066-32407085 | Msa0677830:CDS | 45.0% |
| GTCAACCTGATCAGTTTGCA+TGG | + | chr4_4:32407126-32407145 | Msa0677830:CDS | 45.0% | |
| GAGGGCAATGCAAGTTATCT+TGG | + | chr4_4:32407179-32407198 | Msa0677830:CDS | 45.0% | |
| ! | TTGCCCTCTTCACTTTGAGA+TGG | - | chr4_4:32407311-32407330 | None:intergenic | 45.0% |
| AGCTGACCAACACCATCATC+TGG | - | chr4_4:32407266-32407285 | None:intergenic | 50.0% | |
| AGCTGACCAACACCATCATC+TGG | - | chr4_4:32407266-32407285 | None:intergenic | 50.0% | |
| GGGTCTTCTGGCCATGTCAT+TGG | - | chr4_4:32406504-32406523 | None:intergenic | 55.0% | |
| GGGTCTTCTGGCCATGTCAT+TGG | - | chr4_4:32406504-32406523 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 32406333 | 32407349 | 32406333 | ID=Msa0677830;Name=Msa0677830 |
| chr4_4 | mRNA | 32406333 | 32407349 | 32406333 | ID=Msa0677830-mRNA-1;Parent=Msa0677830;Name=Msa0677830-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|-1|0|1|-1|1|1|0|338 |
| chr4_4 | exon | 32406333 | 32407349 | 32406333 | ID=Msa0677830-mRNA-1:exon:7969;Parent=Msa0677830-mRNA-1 |
| chr4_4 | CDS | 32406333 | 32407349 | 32406333 | ID=Msa0677830-mRNA-1:cds;Parent=Msa0677830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
