Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678640 | XP_013455622.1 | 86.486 | 74 | 10 | 0 | 1 | 74 | 1 | 74 | 4.09e-39 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678640 | sp|O22059|CPC_ARATH | 63.830 | 47 | 17 | 0 | 26 | 72 | 36 | 82 | 1.49e-15 | 67.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678640 | A0A072UKM9 | 86.486 | 74 | 10 | 0 | 1 | 74 | 1 | 74 | 1.95e-39 | 134 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0678640 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678640 | MtrunA17_Chr4g0024181 | 86.486 | 74 | 10 | 0 | 1 | 74 | 1 | 74 | 3.76e-43 | 134 |
| Msa0678640 | MtrunA17_Chr2g0322831 | 68.000 | 50 | 16 | 0 | 24 | 73 | 30 | 79 | 8.75e-20 | 75.1 |
| Msa0678640 | MtrunA17_Chr2g0288361 | 48.000 | 75 | 36 | 2 | 1 | 73 | 1 | 74 | 1.90e-17 | 69.3 |
| Msa0678640 | MtrunA17_Chr5g0396771 | 63.043 | 46 | 17 | 0 | 26 | 71 | 37 | 82 | 5.78e-17 | 68.6 |
| Msa0678640 | MtrunA17_Chr7g0229101 | 57.143 | 42 | 18 | 0 | 27 | 68 | 29 | 70 | 3.27e-13 | 61.2 |
| Msa0678640 | MtrunA17_Chr7g0240821 | 54.545 | 44 | 20 | 0 | 28 | 71 | 59 | 102 | 1.62e-12 | 59.7 |
| Msa0678640 | MtrunA17_Chr4g0044421 | 56.098 | 41 | 18 | 0 | 28 | 68 | 70 | 110 | 2.37e-12 | 58.9 |
| Msa0678640 | MtrunA17_Chr4g0037141 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 3.07e-12 | 59.7 |
| Msa0678640 | MtrunA17_Chr4g0055981 | 60.976 | 41 | 16 | 0 | 28 | 68 | 113 | 153 | 4.68e-12 | 58.5 |
| Msa0678640 | MtrunA17_Chr5g0435101 | 53.659 | 41 | 19 | 0 | 28 | 68 | 69 | 109 | 7.91e-12 | 57.8 |
| Msa0678640 | MtrunA17_Chr8g0360111 | 56.098 | 41 | 18 | 0 | 28 | 68 | 83 | 123 | 9.12e-12 | 58.2 |
| Msa0678640 | MtrunA17_Chr7g0220341 | 56.098 | 41 | 18 | 0 | 28 | 68 | 85 | 125 | 1.47e-11 | 57.8 |
| Msa0678640 | MtrunA17_Chr3g0121241 | 54.762 | 42 | 19 | 0 | 27 | 68 | 99 | 140 | 1.72e-11 | 57.4 |
| Msa0678640 | MtrunA17_Chr4g0070641 | 56.098 | 41 | 18 | 0 | 28 | 68 | 70 | 110 | 1.85e-11 | 56.2 |
| Msa0678640 | MtrunA17_Chr8g0346561 | 56.098 | 41 | 18 | 0 | 28 | 68 | 70 | 110 | 2.30e-11 | 57.0 |
| Msa0678640 | MtrunA17_Chr4g0070611 | 56.098 | 41 | 18 | 0 | 28 | 68 | 70 | 110 | 3.22e-11 | 56.6 |
| Msa0678640 | MtrunA17_Chr5g0434901 | 51.220 | 41 | 20 | 0 | 28 | 68 | 31 | 71 | 4.85e-11 | 53.9 |
| Msa0678640 | MtrunA17_Chr7g0228991 | 51.220 | 41 | 20 | 0 | 28 | 68 | 87 | 127 | 5.16e-11 | 56.2 |
| Msa0678640 | MtrunA17_Chr7g0275911 | 54.545 | 44 | 20 | 0 | 28 | 71 | 70 | 113 | 5.86e-11 | 55.8 |
| Msa0678640 | MtrunA17_Chr1g0152011 | 52.381 | 42 | 20 | 0 | 28 | 69 | 71 | 112 | 6.51e-11 | 55.8 |
| Msa0678640 | MtrunA17_Chr3g0135311 | 50.000 | 42 | 21 | 0 | 28 | 69 | 71 | 112 | 6.68e-11 | 55.8 |
| Msa0678640 | MtrunA17_Chr7g0229131 | 47.619 | 42 | 22 | 0 | 27 | 68 | 29 | 70 | 8.10e-11 | 54.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0678640 | AT2G46410.1 | 63.830 | 47 | 17 | 0 | 26 | 72 | 36 | 82 | 1.52e-16 | 67.8 |
| Msa0678640 | AT1G01380.1 | 65.854 | 41 | 14 | 0 | 26 | 66 | 32 | 72 | 2.25e-15 | 64.7 |
| Msa0678640 | AT5G53200.1 | 56.522 | 46 | 20 | 0 | 26 | 71 | 31 | 76 | 9.19e-14 | 60.8 |
| Msa0678640 | AT4G01060.3 | 60.976 | 41 | 16 | 0 | 26 | 66 | 31 | 71 | 1.89e-13 | 59.3 |
| Msa0678640 | AT4G01060.1 | 60.976 | 41 | 16 | 0 | 26 | 66 | 33 | 73 | 2.01e-13 | 59.3 |
| Msa0678640 | AT4G01060.2 | 60.976 | 41 | 16 | 0 | 26 | 66 | 30 | 70 | 2.09e-13 | 59.3 |
| Msa0678640 | AT1G22640.3 | 58.537 | 41 | 17 | 0 | 28 | 68 | 13 | 53 | 3.30e-12 | 58.9 |
| Msa0678640 | AT2G30420.1 | 54.348 | 46 | 21 | 0 | 26 | 71 | 38 | 83 | 3.74e-12 | 57.0 |
| Msa0678640 | AT4G38620.1 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 5.17e-12 | 59.3 |
| Msa0678640 | AT1G22640.1 | 58.537 | 41 | 17 | 0 | 28 | 68 | 70 | 110 | 6.83e-12 | 58.9 |
| Msa0678640 | AT5G35550.1 | 58.537 | 41 | 17 | 0 | 28 | 68 | 72 | 112 | 1.63e-11 | 57.8 |
| Msa0678640 | AT5G14750.4 | 50.000 | 44 | 22 | 0 | 28 | 71 | 13 | 56 | 2.72e-11 | 55.5 |
| Msa0678640 | AT5G14750.2 | 50.000 | 44 | 22 | 0 | 28 | 71 | 13 | 56 | 2.72e-11 | 55.5 |
| Msa0678640 | AT4G09460.1 | 51.220 | 41 | 20 | 0 | 28 | 68 | 70 | 110 | 2.73e-11 | 57.0 |
| Msa0678640 | AT3G49690.1 | 52.381 | 42 | 20 | 0 | 28 | 69 | 71 | 112 | 4.22e-11 | 57.0 |
| Msa0678640 | AT5G14750.3 | 50.000 | 44 | 22 | 0 | 28 | 71 | 40 | 83 | 5.33e-11 | 55.5 |
| Msa0678640 | AT3G27920.1 | 47.917 | 48 | 25 | 0 | 24 | 71 | 68 | 115 | 6.00e-11 | 55.8 |
| Msa0678640 | AT5G65790.1 | 52.381 | 42 | 20 | 0 | 28 | 69 | 71 | 112 | 7.01e-11 | 56.2 |
| Msa0678640 | AT2G30424.1 | 46.154 | 52 | 25 | 1 | 26 | 74 | 34 | 85 | 8.17e-11 | 53.5 |
| Msa0678640 | AT3G13540.1 | 56.098 | 41 | 18 | 0 | 28 | 68 | 81 | 121 | 8.85e-11 | 55.8 |
| Msa0678640 | AT2G30432.1 | 50.000 | 46 | 23 | 0 | 26 | 71 | 33 | 78 | 9.07e-11 | 52.8 |
| Msa0678640 | AT5G35550.2 | 60.000 | 40 | 16 | 0 | 29 | 68 | 76 | 115 | 9.19e-11 | 55.8 |
| Msa0678640 | AT5G14750.1 | 50.000 | 44 | 22 | 0 | 28 | 71 | 74 | 117 | 9.34e-11 | 55.1 |
Find 27 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCTTCTGCTGTTCTTCC+AGG | 0.213845 | 4_4:-34722327 | None:intergenic |
| ACTACAAATAGAGAAGAAAT+AGG | 0.260769 | 4_4:-34721476 | None:intergenic |
| CAATGGTTTATAATCTTGTT+GGG | 0.335018 | 4_4:+34721953 | Msa0678640:CDS |
| AAGTAAATTATTGTTAATAT+AGG | 0.342014 | 4_4:-34721526 | None:intergenic |
| TTGATTGCTGGAAGAATTCC+TGG | 0.342209 | 4_4:+34722309 | Msa0678640:CDS |
| TGAGTGGTGTATTAATATAT+AGG | 0.379554 | 4_4:-34721552 | None:intergenic |
| CATAGGTGGTCATTGATTGC+TGG | 0.399125 | 4_4:+34722297 | Msa0678640:intron |
| ACAATGGTTTATAATCTTGT+TGG | 0.399798 | 4_4:+34721952 | Msa0678640:CDS |
| TTTCTTGATTCATTCATAGT+TGG | 0.417658 | 4_4:-34722394 | None:intergenic |
| TCAACCTTTGAACCTTGGTC+TGG | 0.418134 | 4_4:-34721901 | None:intergenic |
| AGAGAAGAAATAGGGAAGAC+GGG | 0.426905 | 4_4:-34721467 | None:intergenic |
| AATCAAGATGTGGGAAACTA+TGG | 0.433656 | 4_4:-34721608 | None:intergenic |
| CTACAAATAGAGAAGAAATA+GGG | 0.442382 | 4_4:-34721475 | None:intergenic |
| AAAATTCAACCTTTGAACCT+TGG | 0.444402 | 4_4:-34721906 | None:intergenic |
| GTATTTGATAATCAAGATGT+GGG | 0.495195 | 4_4:-34721617 | None:intergenic |
| TTTATAATCTTGTTGGGGAG+AGG | 0.499577 | 4_4:+34721959 | Msa0678640:CDS |
| AGAGAAAATGCTTATTACAA+TGG | 0.512584 | 4_4:+34721936 | Msa0678640:CDS |
| TGTATTTGATAATCAAGATG+TGG | 0.524459 | 4_4:-34721618 | None:intergenic |
| TGAATGAATCAAGAAATTTG+TGG | 0.536313 | 4_4:+34722401 | Msa0678640:three_prime_UTR |
| AACTTAATTTGCTATTGCAA+TGG | 0.540183 | 4_4:+34721655 | Msa0678640:exon |
| TAGAGAAGAAATAGGGAAGA+CGG | 0.548087 | 4_4:-34721468 | None:intergenic |
| GCAACCAGACCAAGGTTCAA+AGG | 0.564494 | 4_4:+34721897 | Msa0678640:CDS |
| AATGGTTTATAATCTTGTTG+GGG | 0.582716 | 4_4:+34721954 | Msa0678640:CDS |
| AATGTTTCAACAGATTCCAA+AGG | 0.613753 | 4_4:+34721701 | Msa0678640:CDS |
| GAGAAGAAATAGGGAAGACG+GGG | 0.635275 | 4_4:-34721466 | None:intergenic |
| ACAGATCAGCAACCAGACCA+AGG | 0.650716 | 4_4:+34721889 | Msa0678640:intron |
| TGGAATGATTGAGATTTGAG+TGG | 0.693035 | 4_4:-34721568 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAATTATTGTTAATAT+AGG | - | chr4_4:34721529-34721548 | None:intergenic | 10.0% |
| !! | AAGTAAATTATTGTTAATAT+AGG | - | chr4_4:34721529-34721548 | None:intergenic | 10.0% |
| !!! | AATACTTTTTTTATACACTA+AGG | + | chr4_4:34721788-34721807 | Msa0678640:intron | 15.0% |
| !! | TACCATTAAAAAATAATTAC+TGG | - | chr4_4:34722118-34722137 | None:intergenic | 15.0% |
| !!! | AATACTTTTTTTATACACTA+AGG | + | chr4_4:34721788-34721807 | Msa0678640:intron | 15.0% |
| !! | TACCATTAAAAAATAATTAC+TGG | - | chr4_4:34722118-34722137 | None:intergenic | 15.0% |
| !!! | CTTTTCTCTTAATCAATATA+TGG | - | chr4_4:34721858-34721877 | None:intergenic | 20.0% |
| !!! | CATATATTGATTAAGAGAAA+AGG | + | chr4_4:34721856-34721875 | Msa0678640:intron | 20.0% |
| !! | ATAACATCAATAACAAAGTT+TGG | - | chr4_4:34722033-34722052 | None:intergenic | 20.0% |
| !!! | CACCAGTAATTATTTTTTAA+TGG | + | chr4_4:34722113-34722132 | Msa0678640:intron | 20.0% |
| !! | TATGAATGAATCAAGAAATT+TGG | + | chr4_4:34722399-34722418 | Msa0678640:three_prime_UTR | 20.0% |
| !!! | CTTTTCTCTTAATCAATATA+TGG | - | chr4_4:34721858-34721877 | None:intergenic | 20.0% |
| !!! | CATATATTGATTAAGAGAAA+AGG | + | chr4_4:34721856-34721875 | Msa0678640:intron | 20.0% |
| !! | ATAACATCAATAACAAAGTT+TGG | - | chr4_4:34722033-34722052 | None:intergenic | 20.0% |
| !!! | CACCAGTAATTATTTTTTAA+TGG | + | chr4_4:34722113-34722132 | Msa0678640:intron | 20.0% |
| ! | CTACAAATAGAGAAGAAATA+GGG | - | chr4_4:34721478-34721497 | None:intergenic | 25.0% |
| ! | ACTACAAATAGAGAAGAAAT+AGG | - | chr4_4:34721479-34721498 | None:intergenic | 25.0% |
| ! | TGAGTGGTGTATTAATATAT+AGG | - | chr4_4:34721555-34721574 | None:intergenic | 25.0% |
| !! | GTATTTGATAATCAAGATGT+GGG | - | chr4_4:34721620-34721639 | None:intergenic | 25.0% |
| !! | TGTATTTGATAATCAAGATG+TGG | - | chr4_4:34721621-34721640 | None:intergenic | 25.0% |
| !!! | AACTTAATTTGCTATTGCAA+TGG | + | chr4_4:34721655-34721674 | Msa0678640:exon | 25.0% |
| !!! | ATCTGTTGAAACATTTTTAG+AGG | - | chr4_4:34721696-34721715 | None:intergenic | 25.0% |
| !! | AAAAGACATGCATTCTAAAA+GGG | - | chr4_4:34721729-34721748 | None:intergenic | 25.0% |
| ! | TAAAAGACATGCATTCTAAA+AGG | - | chr4_4:34721730-34721749 | None:intergenic | 25.0% |
| ! | AGAGAAAATGCTTATTACAA+TGG | + | chr4_4:34721936-34721955 | Msa0678640:CDS | 25.0% |
| ! | ACAATGGTTTATAATCTTGT+TGG | + | chr4_4:34721952-34721971 | Msa0678640:CDS | 25.0% |
| ! | CAATGGTTTATAATCTTGTT+GGG | + | chr4_4:34721953-34721972 | Msa0678640:CDS | 25.0% |
| ! | AATGGTTTATAATCTTGTTG+GGG | + | chr4_4:34721954-34721973 | Msa0678640:CDS | 25.0% |
| !! | ATGAATGTGTATTTTCTCAT+AGG | + | chr4_4:34722280-34722299 | Msa0678640:intron | 25.0% |
| ! | CAGAAGAGATAGAAAAATAT+TGG | + | chr4_4:34722340-34722359 | Msa0678640:CDS | 25.0% |
| ! | TTTCTTGATTCATTCATAGT+TGG | - | chr4_4:34722397-34722416 | None:intergenic | 25.0% |
| ! | CTACAAATAGAGAAGAAATA+GGG | - | chr4_4:34721478-34721497 | None:intergenic | 25.0% |
| ! | ACTACAAATAGAGAAGAAAT+AGG | - | chr4_4:34721479-34721498 | None:intergenic | 25.0% |
| ! | TGAGTGGTGTATTAATATAT+AGG | - | chr4_4:34721555-34721574 | None:intergenic | 25.0% |
| !! | GTATTTGATAATCAAGATGT+GGG | - | chr4_4:34721620-34721639 | None:intergenic | 25.0% |
| !! | TGTATTTGATAATCAAGATG+TGG | - | chr4_4:34721621-34721640 | None:intergenic | 25.0% |
| !!! | AACTTAATTTGCTATTGCAA+TGG | + | chr4_4:34721655-34721674 | Msa0678640:exon | 25.0% |
| !!! | ATCTGTTGAAACATTTTTAG+AGG | - | chr4_4:34721696-34721715 | None:intergenic | 25.0% |
| !! | AAAAGACATGCATTCTAAAA+GGG | - | chr4_4:34721729-34721748 | None:intergenic | 25.0% |
| ! | TAAAAGACATGCATTCTAAA+AGG | - | chr4_4:34721730-34721749 | None:intergenic | 25.0% |
| ! | AGAGAAAATGCTTATTACAA+TGG | + | chr4_4:34721936-34721955 | Msa0678640:CDS | 25.0% |
| ! | ACAATGGTTTATAATCTTGT+TGG | + | chr4_4:34721952-34721971 | Msa0678640:CDS | 25.0% |
| ! | CAATGGTTTATAATCTTGTT+GGG | + | chr4_4:34721953-34721972 | Msa0678640:CDS | 25.0% |
| ! | AATGGTTTATAATCTTGTTG+GGG | + | chr4_4:34721954-34721973 | Msa0678640:CDS | 25.0% |
| !! | ATGAATGTGTATTTTCTCAT+AGG | + | chr4_4:34722280-34722299 | Msa0678640:intron | 25.0% |
| ! | CAGAAGAGATAGAAAAATAT+TGG | + | chr4_4:34722340-34722359 | Msa0678640:CDS | 25.0% |
| ! | TTTCTTGATTCATTCATAGT+TGG | - | chr4_4:34722397-34722416 | None:intergenic | 25.0% |
| !!! | TGGTGTTATTTTGCAGAATA+TGG | - | chr4_4:34721591-34721610 | None:intergenic | 30.0% |
| AATGTTTCAACAGATTCCAA+AGG | + | chr4_4:34721701-34721720 | Msa0678640:CDS | 30.0% | |
| AAAATTCAACCTTTGAACCT+TGG | - | chr4_4:34721909-34721928 | None:intergenic | 30.0% | |
| ! | TTTGGAATGAAAGTGAAAAG+AGG | - | chr4_4:34722015-34722034 | None:intergenic | 30.0% |
| GTCTGATGTTTGTGTTTATT+TGG | - | chr4_4:34722069-34722088 | None:intergenic | 30.0% | |
| ! | AATGTGTATTTTCTCATAGG+TGG | + | chr4_4:34722283-34722302 | Msa0678640:intron | 30.0% |
| !!! | TGGTGTTATTTTGCAGAATA+TGG | - | chr4_4:34721591-34721610 | None:intergenic | 30.0% |
| AATGTTTCAACAGATTCCAA+AGG | + | chr4_4:34721701-34721720 | Msa0678640:CDS | 30.0% | |
| AAAATTCAACCTTTGAACCT+TGG | - | chr4_4:34721909-34721928 | None:intergenic | 30.0% | |
| ! | TTTGGAATGAAAGTGAAAAG+AGG | - | chr4_4:34722015-34722034 | None:intergenic | 30.0% |
| GTCTGATGTTTGTGTTTATT+TGG | - | chr4_4:34722069-34722088 | None:intergenic | 30.0% | |
| ! | AATGTGTATTTTCTCATAGG+TGG | + | chr4_4:34722283-34722302 | Msa0678640:intron | 30.0% |
| TAGAGAAGAAATAGGGAAGA+CGG | - | chr4_4:34721471-34721490 | None:intergenic | 35.0% | |
| TGGAATGATTGAGATTTGAG+TGG | - | chr4_4:34721571-34721590 | None:intergenic | 35.0% | |
| AATCAAGATGTGGGAAACTA+TGG | - | chr4_4:34721611-34721630 | None:intergenic | 35.0% | |
| TTTATAATCTTGTTGGGGAG+AGG | + | chr4_4:34721959-34721978 | Msa0678640:CDS | 35.0% | |
| AAACATCAGACACGAAAGTA+AGG | + | chr4_4:34722078-34722097 | Msa0678640:intron | 35.0% | |
| ! | AAACTTTCGATCTAGAGTGT+CGG | + | chr4_4:34722209-34722228 | Msa0678640:intron | 35.0% |
| TAGAGAAGAAATAGGGAAGA+CGG | - | chr4_4:34721471-34721490 | None:intergenic | 35.0% | |
| TGGAATGATTGAGATTTGAG+TGG | - | chr4_4:34721571-34721590 | None:intergenic | 35.0% | |
| AATCAAGATGTGGGAAACTA+TGG | - | chr4_4:34721611-34721630 | None:intergenic | 35.0% | |
| TTTATAATCTTGTTGGGGAG+AGG | + | chr4_4:34721959-34721978 | Msa0678640:CDS | 35.0% | |
| AAACATCAGACACGAAAGTA+AGG | + | chr4_4:34722078-34722097 | Msa0678640:intron | 35.0% | |
| ! | AAACTTTCGATCTAGAGTGT+CGG | + | chr4_4:34722209-34722228 | Msa0678640:intron | 35.0% |
| AGAGAAGAAATAGGGAAGAC+GGG | - | chr4_4:34721470-34721489 | None:intergenic | 40.0% | |
| !! | GCATTCTAAAAGGGTACCTT+TGG | - | chr4_4:34721720-34721739 | None:intergenic | 40.0% |
| CTCTAGATCGAAAGTTTGTC+TGG | - | chr4_4:34722206-34722225 | None:intergenic | 40.0% | |
| TTGATTGCTGGAAGAATTCC+TGG | + | chr4_4:34722309-34722328 | Msa0678640:CDS | 40.0% | |
| AGAGAAGAAATAGGGAAGAC+GGG | - | chr4_4:34721470-34721489 | None:intergenic | 40.0% | |
| !! | GCATTCTAAAAGGGTACCTT+TGG | - | chr4_4:34721720-34721739 | None:intergenic | 40.0% |
| CTCTAGATCGAAAGTTTGTC+TGG | - | chr4_4:34722206-34722225 | None:intergenic | 40.0% | |
| TTGATTGCTGGAAGAATTCC+TGG | + | chr4_4:34722309-34722328 | Msa0678640:CDS | 40.0% | |
| GAGAAGAAATAGGGAAGACG+GGG | - | chr4_4:34721469-34721488 | None:intergenic | 45.0% | |
| TCAACCTTTGAACCTTGGTC+TGG | - | chr4_4:34721904-34721923 | None:intergenic | 45.0% | |
| TAATCTTGTTGGGGAGAGGT+TGG | + | chr4_4:34721963-34721982 | Msa0678640:intron | 45.0% | |
| ! | CATAGGTGGTCATTGATTGC+TGG | + | chr4_4:34722297-34722316 | Msa0678640:intron | 45.0% |
| ATCTCTTCTGCTGTTCTTCC+AGG | - | chr4_4:34722330-34722349 | None:intergenic | 45.0% | |
| GAGAAGAAATAGGGAAGACG+GGG | - | chr4_4:34721469-34721488 | None:intergenic | 45.0% | |
| TCAACCTTTGAACCTTGGTC+TGG | - | chr4_4:34721904-34721923 | None:intergenic | 45.0% | |
| TAATCTTGTTGGGGAGAGGT+TGG | + | chr4_4:34721963-34721982 | Msa0678640:intron | 45.0% | |
| ! | CATAGGTGGTCATTGATTGC+TGG | + | chr4_4:34722297-34722316 | Msa0678640:intron | 45.0% |
| ATCTCTTCTGCTGTTCTTCC+AGG | - | chr4_4:34722330-34722349 | None:intergenic | 45.0% | |
| ACAGATCAGCAACCAGACCA+AGG | + | chr4_4:34721889-34721908 | Msa0678640:intron | 50.0% | |
| GCAACCAGACCAAGGTTCAA+AGG | + | chr4_4:34721897-34721916 | Msa0678640:CDS | 50.0% | |
| ACAGATCAGCAACCAGACCA+AGG | + | chr4_4:34721889-34721908 | Msa0678640:intron | 50.0% | |
| GCAACCAGACCAAGGTTCAA+AGG | + | chr4_4:34721897-34721916 | Msa0678640:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 34721457 | 34722420 | 34721457 | ID=Msa0678640;Name=Msa0678640 |
| chr4_4 | mRNA | 34721457 | 34722420 | 34721457 | ID=Msa0678640-mRNA-1;Parent=Msa0678640;Name=Msa0678640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=217|1|1|1|1|1|3|31|74 |
| chr4_4 | exon | 34721457 | 34721722 | 34721457 | ID=Msa0678640-mRNA-1:exon:8322;Parent=Msa0678640-mRNA-1 |
| chr4_4 | exon | 34721893 | 34721980 | 34721893 | ID=Msa0678640-mRNA-1:exon:8323;Parent=Msa0678640-mRNA-1 |
| chr4_4 | exon | 34722302 | 34722420 | 34722302 | ID=Msa0678640-mRNA-1:exon:8324;Parent=Msa0678640-mRNA-1 |
| chr4_4 | five_prime_UTR | 34721457 | 34721673 | 34721457 | ID=Msa0678640-mRNA-1:five_prime_utr;Parent=Msa0678640-mRNA-1 |
| chr4_4 | CDS | 34721674 | 34721722 | 34721674 | ID=Msa0678640-mRNA-1:cds;Parent=Msa0678640-mRNA-1 |
| chr4_4 | CDS | 34721893 | 34721980 | 34721893 | ID=Msa0678640-mRNA-1:cds;Parent=Msa0678640-mRNA-1 |
| chr4_4 | CDS | 34722302 | 34722389 | 34722302 | ID=Msa0678640-mRNA-1:cds;Parent=Msa0678640-mRNA-1 |
| chr4_4 | three_prime_UTR | 34722390 | 34722420 | 34722390 | ID=Msa0678640-mRNA-1:three_prime_utr;Parent=Msa0678640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
