AlfalfaGEDB | Msa0678640

M. sativa cultivar zhongmu-4 / Msa0678640

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0678640	XP_013455622.1	86.486	74	10	0	1	74	1	74	4.09e-39	134

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0678640	sp\|O22059\|CPC_ARATH	63.830	47	17	0	26	72	36	82	1.49e-15	67.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0678640	A0A072UKM9	86.486	74	10	0	1	74	1	74	1.95e-39	134

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TFs/TRs:

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Gene ID	Type	Classification
Msa0678640	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0678640	MtrunA17_Chr4g0024181	86.486	74	10	0	1	74	1	74	3.76e-43	134
Msa0678640	MtrunA17_Chr2g0322831	68.000	50	16	0	24	73	30	79	8.75e-20	75.1
Msa0678640	MtrunA17_Chr2g0288361	48.000	75	36	2	1	73	1	74	1.90e-17	69.3
Msa0678640	MtrunA17_Chr5g0396771	63.043	46	17	0	26	71	37	82	5.78e-17	68.6
Msa0678640	MtrunA17_Chr7g0229101	57.143	42	18	0	27	68	29	70	3.27e-13	61.2
Msa0678640	MtrunA17_Chr7g0240821	54.545	44	20	0	28	71	59	102	1.62e-12	59.7
Msa0678640	MtrunA17_Chr4g0044421	56.098	41	18	0	28	68	70	110	2.37e-12	58.9
Msa0678640	MtrunA17_Chr4g0037141	58.537	41	17	0	28	68	70	110	3.07e-12	59.7
Msa0678640	MtrunA17_Chr4g0055981	60.976	41	16	0	28	68	113	153	4.68e-12	58.5
Msa0678640	MtrunA17_Chr5g0435101	53.659	41	19	0	28	68	69	109	7.91e-12	57.8

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0678640	AT2G46410.1	63.830	47	17	26	72	36	82	1.52e-16	67.8
Msa0678640	AT1G01380.1	65.854	41	14	26	66	32	72	2.25e-15	64.7
Msa0678640	AT5G53200.1	56.522	46	20	26	71	31	76	9.19e-14	60.8
Msa0678640	AT4G01060.3	60.976	41	16	26	66	31	71	1.89e-13	59.3
Msa0678640	AT4G01060.1	60.976	41	16	26	66	33	73	2.01e-13	59.3
Msa0678640	AT4G01060.2	60.976	41	16	26	66	30	70	2.09e-13	59.3
Msa0678640	AT1G22640.3	58.537	41	17	28	68	13	53	3.30e-12	58.9
Msa0678640	AT2G30420.1	54.348	46	21	26	71	38	83	3.74e-12	57.0
Msa0678640	AT4G38620.1	58.537	41	17	28	68	70	110	5.17e-12	59.3
Msa0678640	AT1G22640.1	58.537	41	17	28	68	70	110	6.83e-12	58.9

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Find 27 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAACCTTTGAACCT+TGG	0.444402	4_4:-34721906	None:intergenic
AACTTAATTTGCTATTGCAA+TGG	0.540183	4_4:+34721655	Msa0678640:exon
AAGTAAATTATTGTTAATAT+AGG	0.342014	4_4:-34721526	None:intergenic
AATCAAGATGTGGGAAACTA+TGG	0.433656	4_4:-34721608	None:intergenic
AATGGTTTATAATCTTGTTG+GGG	0.582716	4_4:+34721954	Msa0678640:CDS
AATGTTTCAACAGATTCCAA+AGG	0.613753	4_4:+34721701	Msa0678640:CDS
ACAATGGTTTATAATCTTGT+TGG	0.399798	4_4:+34721952	Msa0678640:CDS
ACAGATCAGCAACCAGACCA+AGG	0.650716	4_4:+34721889	Msa0678640:intron
ACTACAAATAGAGAAGAAAT+AGG	0.260769	4_4:-34721476	None:intergenic
AGAGAAAATGCTTATTACAA+TGG	0.512584	4_4:+34721936	Msa0678640:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTTTCAACAGATTCCAA+AGG	+	chr4_4:34721701-34721720	Msa0678640:CDS	30.0%
AAAATTCAACCTTTGAACCT+TGG	-	chr4_4:34721909-34721928	None:intergenic	30.0%
GTCTGATGTTTGTGTTTATT+TGG	-	chr4_4:34722069-34722088	None:intergenic	30.0%
AATGTTTCAACAGATTCCAA+AGG	+	chr4_4:34721701-34721720	Msa0678640:CDS	30.0%
AAAATTCAACCTTTGAACCT+TGG	-	chr4_4:34721909-34721928	None:intergenic	30.0%
GTCTGATGTTTGTGTTTATT+TGG	-	chr4_4:34722069-34722088	None:intergenic	30.0%
TAGAGAAGAAATAGGGAAGA+CGG	-	chr4_4:34721471-34721490	None:intergenic	35.0%
TGGAATGATTGAGATTTGAG+TGG	-	chr4_4:34721571-34721590	None:intergenic	35.0%
AATCAAGATGTGGGAAACTA+TGG	-	chr4_4:34721611-34721630	None:intergenic	35.0%
TTTATAATCTTGTTGGGGAG+AGG	+	chr4_4:34721959-34721978	Msa0678640:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	34721457	34722420	34721457	ID=Msa0678640;Name=Msa0678640
chr4_4	mRNA	34721457	34722420	34721457	ID=Msa0678640-mRNA-1;Parent=Msa0678640;Name=Msa0678640-mRNA-1;_AED=0.02;_eAED=0.02;_QI=217\|1\|1\|1\|1\|1\|3\|31\|74
chr4_4	exon	34721457	34721722	34721457	ID=Msa0678640-mRNA-1:exon:8322;Parent=Msa0678640-mRNA-1
chr4_4	exon	34721893	34721980	34721893	ID=Msa0678640-mRNA-1:exon:8323;Parent=Msa0678640-mRNA-1
chr4_4	exon	34722302	34722420	34722302	ID=Msa0678640-mRNA-1:exon:8324;Parent=Msa0678640-mRNA-1
chr4_4	five_prime_UTR	34721457	34721673	34721457	ID=Msa0678640-mRNA-1:five_prime_utr;Parent=Msa0678640-mRNA-1
chr4_4	CDS	34721674	34721722	34721674	ID=Msa0678640-mRNA-1:cds;Parent=Msa0678640-mRNA-1
chr4_4	CDS	34721893	34721980	34721893	ID=Msa0678640-mRNA-1:cds;Parent=Msa0678640-mRNA-1
chr4_4	CDS	34722302	34722389	34722302	ID=Msa0678640-mRNA-1:cds;Parent=Msa0678640-mRNA-1
chr4_4	three_prime_UTR	34722390	34722420	34722390	ID=Msa0678640-mRNA-1:three_prime_utr;Parent=Msa0678640-mRNA-1

Gene Sequence	>Msa0678640 ATGGCTGACTCAGAACACTCCTCTAAAAATGTTTCAACAGATTCCAAAGATCAGCAACCAGACCAAGGTTCAAAGGTTGAATTTTCTGAAGAAGAGAAAATGCTTATTACAATGGTTTATAATCTTGTTGGGGAGAGGTGGTCATTGATTGCTGGAAGAATTCCTGGAAGAACAGCAGAAGAGATAGAAAAATATTGGAATTCAAGACACTCGACTAGCAAATGA
Protein sequence	>Msa0678640 MADSEHSSKNVSTDSKDQQPDQGSKVEFSEEEKMLITMVYNLVGERWSLIAGRIPGRTAEEIEKYWNSRHSTSK*